Multiple sequence alignment - TraesCS6D01G272500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G272500
chr6D
100.000
4546
0
0
1
4546
381343459
381348004
0.000000e+00
8395.0
1
TraesCS6D01G272500
chr6D
82.065
184
24
4
3959
4134
353638212
353638030
1.020000e-31
148.0
2
TraesCS6D01G272500
chr6D
77.070
157
26
6
563
711
263045242
263045088
1.050000e-11
82.4
3
TraesCS6D01G272500
chr6A
92.736
3056
141
27
367
3347
522607296
522610345
0.000000e+00
4338.0
4
TraesCS6D01G272500
chr6A
93.141
729
22
5
3342
4047
522610295
522611018
0.000000e+00
1044.0
5
TraesCS6D01G272500
chr6A
88.367
490
34
10
4069
4543
522611010
522611491
6.600000e-158
568.0
6
TraesCS6D01G272500
chr6A
88.095
126
14
1
3966
4091
90360058
90360182
1.020000e-31
148.0
7
TraesCS6D01G272500
chr6A
87.597
129
15
1
3963
4091
105585571
105585698
1.020000e-31
148.0
8
TraesCS6D01G272500
chr6A
87.023
131
15
2
3962
4091
441830410
441830281
3.660000e-31
147.0
9
TraesCS6D01G272500
chr6A
79.755
163
21
5
534
688
176992618
176992776
1.730000e-19
108.0
10
TraesCS6D01G272500
chr6B
95.407
1829
64
9
1394
3218
569047046
569045234
0.000000e+00
2894.0
11
TraesCS6D01G272500
chr6B
93.422
1353
46
10
3175
4517
569045196
569043877
0.000000e+00
1965.0
12
TraesCS6D01G272500
chr6B
94.005
834
43
4
1
828
569048940
569048108
0.000000e+00
1256.0
13
TraesCS6D01G272500
chr6B
93.082
636
21
6
821
1439
569047669
569047040
0.000000e+00
909.0
14
TraesCS6D01G272500
chr6B
90.909
44
4
0
3175
3218
569045250
569045207
4.910000e-05
60.2
15
TraesCS6D01G272500
chr6B
100.000
30
0
0
4517
4546
569043853
569043824
6.350000e-04
56.5
16
TraesCS6D01G272500
chr4A
88.710
124
12
2
3969
4091
546123838
546123716
2.830000e-32
150.0
17
TraesCS6D01G272500
chr1D
87.597
129
15
1
3963
4091
290446042
290446169
1.020000e-31
148.0
18
TraesCS6D01G272500
chr5A
87.023
131
16
1
3961
4091
151066928
151067057
3.660000e-31
147.0
19
TraesCS6D01G272500
chr7D
89.535
86
5
3
557
640
182992699
182992782
6.220000e-19
106.0
20
TraesCS6D01G272500
chr2D
77.348
181
28
11
550
719
628612532
628612354
1.350000e-15
95.3
21
TraesCS6D01G272500
chr5D
83.117
77
9
4
645
719
490163027
490163101
2.940000e-07
67.6
22
TraesCS6D01G272500
chr3B
92.500
40
3
0
3919
3958
663125127
663125166
1.770000e-04
58.4
23
TraesCS6D01G272500
chr3A
100.000
29
0
0
591
619
696236066
696236038
2.000000e-03
54.7
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G272500
chr6D
381343459
381348004
4545
False
8395.000000
8395
100.000000
1
4546
1
chr6D.!!$F1
4545
1
TraesCS6D01G272500
chr6A
522607296
522611491
4195
False
1983.333333
4338
91.414667
367
4543
3
chr6A.!!$F4
4176
2
TraesCS6D01G272500
chr6B
569043824
569048940
5116
True
1190.116667
2894
94.470833
1
4546
6
chr6B.!!$R1
4545
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
316
320
0.229500
CCAAAACTTTGCTTTCGCGC
59.771
50.0
0.00
0.00
39.65
6.86
F
321
325
0.790814
ACTTTGCTTTCGCGCTAGAC
59.209
50.0
5.56
0.00
39.65
2.59
F
1653
2203
0.808755
GATTTCCGTTGGCCGTCATT
59.191
50.0
0.00
0.00
33.66
2.57
F
2562
3120
0.179127
CAGTTAGCTGCGCTGCTCTA
60.179
55.0
39.70
27.23
42.97
2.43
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1326
1830
0.954452
CAAGCCTCCACAACAAGGTC
59.046
55.000
0.0
0.0
34.96
3.85
R
2011
2566
1.424403
TTGAACGTACCTGCATGTCG
58.576
50.000
0.0
5.3
0.00
4.35
R
3463
4099
1.689273
CCCTAGCACCATAGAGTCCAC
59.311
57.143
0.0
0.0
0.00
4.02
R
4180
4840
1.544537
CGTTCAGTTTGGTGGGGATGA
60.545
52.381
0.0
0.0
0.00
2.92
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
3.385755
GGGCTCAATTTGATGGCTACAAT
59.614
43.478
16.20
0.00
0.00
2.71
40
41
2.240493
ATGGCTAAGCGACCACATAC
57.760
50.000
0.00
0.00
39.19
2.39
41
42
0.899019
TGGCTAAGCGACCACATACA
59.101
50.000
0.00
0.00
0.00
2.29
56
57
2.603110
ACATACATTGATGTCGACGCAC
59.397
45.455
11.62
5.34
41.97
5.34
57
58
2.355717
TACATTGATGTCGACGCACA
57.644
45.000
11.62
7.99
41.97
4.57
109
113
1.183030
ATGTCCGTGAGAACCACCGA
61.183
55.000
0.00
0.00
42.76
4.69
144
148
1.022735
GATGCCATGACTTGCCTCTG
58.977
55.000
0.00
0.00
0.00
3.35
182
186
2.027625
CTTCGTCTCCACAACGCCC
61.028
63.158
0.00
0.00
39.90
6.13
184
188
4.351938
CGTCTCCACAACGCCCGA
62.352
66.667
0.00
0.00
32.84
5.14
187
191
0.953960
GTCTCCACAACGCCCGATTT
60.954
55.000
0.00
0.00
0.00
2.17
198
202
4.204891
CCGATTTCGACGCGGTGC
62.205
66.667
12.47
0.00
43.02
5.01
276
280
0.707822
CGCCATGTTGTTTTTAGCGC
59.292
50.000
0.00
0.00
35.33
5.92
314
318
1.285578
TGCCAAAACTTTGCTTTCGC
58.714
45.000
0.00
0.00
36.86
4.70
316
320
0.229500
CCAAAACTTTGCTTTCGCGC
59.771
50.000
0.00
0.00
39.65
6.86
321
325
0.790814
ACTTTGCTTTCGCGCTAGAC
59.209
50.000
5.56
0.00
39.65
2.59
335
339
1.806623
GCTAGACCATTTCGCGACCAT
60.807
52.381
9.15
0.00
0.00
3.55
391
395
3.473647
CGCTCCTCATCTGCCCCA
61.474
66.667
0.00
0.00
0.00
4.96
460
464
1.034838
AGTGAAGCGGCGAGAGAGAT
61.035
55.000
12.98
0.00
0.00
2.75
462
466
1.065701
GTGAAGCGGCGAGAGAGATAA
59.934
52.381
12.98
0.00
0.00
1.75
532
537
1.061131
CATCACAAATCCGACGTCAGC
59.939
52.381
17.16
0.00
0.00
4.26
544
549
2.734606
CGACGTCAGCTTTTTGACCATA
59.265
45.455
17.16
0.00
43.56
2.74
590
595
2.472695
TGTGTTTGCCGAGAATAGCT
57.527
45.000
0.00
0.00
0.00
3.32
623
628
2.476854
GCAAGCATGACAAATCCGTCTC
60.477
50.000
0.00
0.00
36.82
3.36
670
677
7.664318
TGCTCGTAAACTATATCTGTCATCCTA
59.336
37.037
0.00
0.00
0.00
2.94
719
726
9.513727
AAACATTTGATTTGCCATGTTTAAAAC
57.486
25.926
7.22
0.00
44.33
2.43
731
738
8.263640
TGCCATGTTTAAAACTATTATGCCAAT
58.736
29.630
0.00
0.00
0.00
3.16
778
794
2.649129
GCCCCATGTTGAGTTGGCC
61.649
63.158
0.00
0.00
32.74
5.36
1166
1669
2.153645
TCGTGCAGCAAGATGTTCATT
58.846
42.857
6.97
0.00
0.00
2.57
1229
1732
5.014858
TCCGTTCTAGACTTGACCTTGTAT
58.985
41.667
0.00
0.00
0.00
2.29
1241
1744
9.485206
GACTTGACCTTGTATCTTGTTTACTTA
57.515
33.333
0.00
0.00
0.00
2.24
1291
1794
4.263911
CGTTAGGTTCCGTTCGTATTCTTC
59.736
45.833
0.00
0.00
0.00
2.87
1315
1819
2.450609
TCTAGTCGTTGTTTGCCCTC
57.549
50.000
0.00
0.00
0.00
4.30
1575
2125
9.301153
GGGTGCATATGTTAACTGATTAAAAAG
57.699
33.333
7.22
0.00
32.04
2.27
1653
2203
0.808755
GATTTCCGTTGGCCGTCATT
59.191
50.000
0.00
0.00
33.66
2.57
1719
2269
1.409064
AGTGTCGTACATGCATCGGAT
59.591
47.619
0.00
0.00
0.00
4.18
1727
2277
2.989909
ACATGCATCGGATGAGAAACA
58.010
42.857
21.69
9.62
0.00
2.83
1767
2318
4.451096
GGATTTGTGAACACATGTCGTACT
59.549
41.667
8.46
0.00
41.52
2.73
1801
2352
6.828502
TTATGCAGTTATTAAGTCGAGCAG
57.171
37.500
0.00
0.00
33.94
4.24
1823
2374
6.347888
GCAGTAGTTAAAGCGTTCCACAATTA
60.348
38.462
0.00
0.00
0.00
1.40
1835
2386
7.754924
AGCGTTCCACAATTAATATTCACTTTG
59.245
33.333
0.00
0.00
0.00
2.77
1858
2409
8.737168
TTGTTCTGATGTCTTATTATCTTGGG
57.263
34.615
0.00
0.00
0.00
4.12
2011
2566
6.969473
GCTACTAATTGATTTGCTTGGTTCTC
59.031
38.462
0.00
0.00
0.00
2.87
2015
2570
2.844946
TGATTTGCTTGGTTCTCGACA
58.155
42.857
0.00
0.00
0.00
4.35
2226
2781
9.593134
CCTATTACTGCTGGAATTATATCAGTC
57.407
37.037
6.34
0.00
36.37
3.51
2260
2815
5.384063
TCATCGCTTTTCCTTGCATTTTA
57.616
34.783
0.00
0.00
0.00
1.52
2352
2907
8.736751
TGTATCTTTAATGCGGTTTCTTTTTC
57.263
30.769
0.00
0.00
0.00
2.29
2526
3081
8.589338
CCTACTGCTCTAACAGATGGTATTATT
58.411
37.037
0.00
0.00
40.25
1.40
2531
3086
9.461312
TGCTCTAACAGATGGTATTATTTGTTT
57.539
29.630
0.00
0.00
36.89
2.83
2555
3113
1.019278
TTACTGCCAGTTAGCTGCGC
61.019
55.000
1.02
0.00
41.26
6.09
2562
3120
0.179127
CAGTTAGCTGCGCTGCTCTA
60.179
55.000
39.70
27.23
42.97
2.43
2805
3363
5.570234
TCGTTGGTGCTTTCTAAACTTTT
57.430
34.783
0.00
0.00
0.00
2.27
2835
3393
5.628193
CCTAGTTTCGTACAACACACACTAG
59.372
44.000
0.00
0.00
34.64
2.57
2907
3465
5.499139
TGATTTGCTCTTTCGTTTGAGTT
57.501
34.783
0.00
0.00
33.22
3.01
3219
3855
4.606210
TGTTCCTGGTGACTATAGTAGCA
58.394
43.478
5.09
9.19
0.00
3.49
3276
3912
1.746470
TGGAGAATCGTCGCTCTACA
58.254
50.000
5.29
5.29
34.37
2.74
3407
4043
4.040952
CCTTATGGCACTTCTAGCTATGGT
59.959
45.833
0.00
0.00
34.83
3.55
3463
4099
1.375523
GTGTTAGGTCTGGCGTGGG
60.376
63.158
0.00
0.00
0.00
4.61
3734
4392
4.529377
AGATGCCAAGTTCCATGTGAAATT
59.471
37.500
4.47
4.47
41.66
1.82
3775
4434
6.175712
TGCTTGTTTTTGGTTGTTGATTTC
57.824
33.333
0.00
0.00
0.00
2.17
3786
4445
4.803613
GGTTGTTGATTTCGAAGTTGCTTT
59.196
37.500
0.00
0.00
0.00
3.51
3812
4471
1.679680
CAGCATTGCCAACCTATCCAG
59.320
52.381
4.70
0.00
0.00
3.86
3859
4518
4.649674
CCTATAGTGCTCTAGGTTGGTGAA
59.350
45.833
1.55
0.00
31.60
3.18
3964
4624
1.359130
CAAGGGGATTGGAGAGGGTTT
59.641
52.381
0.00
0.00
35.08
3.27
3965
4625
2.580783
CAAGGGGATTGGAGAGGGTTTA
59.419
50.000
0.00
0.00
35.08
2.01
3966
4626
2.493091
AGGGGATTGGAGAGGGTTTAG
58.507
52.381
0.00
0.00
0.00
1.85
3967
4627
2.047296
AGGGGATTGGAGAGGGTTTAGA
59.953
50.000
0.00
0.00
0.00
2.10
3968
4628
2.172930
GGGGATTGGAGAGGGTTTAGAC
59.827
54.545
0.00
0.00
0.00
2.59
3969
4629
2.172930
GGGATTGGAGAGGGTTTAGACC
59.827
54.545
0.00
0.00
45.75
3.85
3970
4630
3.116174
GGATTGGAGAGGGTTTAGACCT
58.884
50.000
1.94
0.00
45.75
3.85
4043
4703
3.724478
GGAAATTTCCCTTTGGATCCCT
58.276
45.455
24.44
0.00
41.40
4.20
4044
4704
4.104086
GGAAATTTCCCTTTGGATCCCTT
58.896
43.478
24.44
0.00
41.40
3.95
4045
4705
4.536090
GGAAATTTCCCTTTGGATCCCTTT
59.464
41.667
24.44
0.00
41.40
3.11
4046
4706
5.491070
GAAATTTCCCTTTGGATCCCTTTG
58.509
41.667
9.90
0.00
41.40
2.77
4047
4707
2.621556
TTCCCTTTGGATCCCTTTGG
57.378
50.000
9.90
5.21
41.40
3.28
4058
4718
6.606241
TGGATCCCTTTGGTTTATAGGAAT
57.394
37.500
9.90
0.00
0.00
3.01
4180
4840
1.068352
AACACCCCTCAGCCCTCTTT
61.068
55.000
0.00
0.00
0.00
2.52
4208
4868
0.744281
CCAAACTGAACGTGCCCTTT
59.256
50.000
0.00
0.00
0.00
3.11
4209
4869
1.136110
CCAAACTGAACGTGCCCTTTT
59.864
47.619
0.00
0.00
0.00
2.27
4210
4870
2.359531
CCAAACTGAACGTGCCCTTTTA
59.640
45.455
0.00
0.00
0.00
1.52
4213
4874
1.202770
ACTGAACGTGCCCTTTTAGCT
60.203
47.619
0.00
0.00
0.00
3.32
4217
4878
0.313987
ACGTGCCCTTTTAGCTTTGC
59.686
50.000
0.00
0.00
0.00
3.68
4343
5006
7.591426
AGCACTTTTTCACGTCTTTCAATTATC
59.409
33.333
0.00
0.00
0.00
1.75
4352
5015
5.470098
ACGTCTTTCAATTATCACTGCTGTT
59.530
36.000
0.00
0.00
0.00
3.16
4356
5019
8.289618
GTCTTTCAATTATCACTGCTGTTAACA
58.710
33.333
8.28
8.28
0.00
2.41
4363
5026
9.762933
AATTATCACTGCTGTTAACAAAATGTT
57.237
25.926
10.03
0.99
43.88
2.71
4369
5032
3.799420
GCTGTTAACAAAATGTTTCCGCA
59.201
39.130
10.03
0.00
41.45
5.69
4396
5059
8.258007
TCTGAGATATGGAACTAAATTGACGTT
58.742
33.333
0.00
0.00
0.00
3.99
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
0.899019
TGTATGTGGTCGCTTAGCCA
59.101
50.000
0.00
0.00
0.00
4.75
40
41
2.433808
CATTGTGCGTCGACATCAATG
58.566
47.619
26.74
26.74
39.14
2.82
41
42
1.202065
GCATTGTGCGTCGACATCAAT
60.202
47.619
17.16
17.59
31.71
2.57
56
57
0.166597
ATCGCACAGTTGTCGCATTG
59.833
50.000
7.22
0.00
0.00
2.82
57
58
0.166597
CATCGCACAGTTGTCGCATT
59.833
50.000
7.22
0.00
0.00
3.56
66
67
0.681733
AGAGTGAACCATCGCACAGT
59.318
50.000
0.00
0.00
38.58
3.55
109
113
0.036010
CATCCTGGAAGCGGAGTTGT
60.036
55.000
0.00
0.00
33.29
3.32
266
270
1.080772
GGGTGCCAGCGCTAAAAAC
60.081
57.895
10.99
6.36
35.36
2.43
276
280
4.720902
TGTCATGCGGGGTGCCAG
62.721
66.667
0.00
0.00
45.60
4.85
316
320
2.128035
GATGGTCGCGAAATGGTCTAG
58.872
52.381
12.06
0.00
0.00
2.43
321
325
1.490693
CTCCGATGGTCGCGAAATGG
61.491
60.000
12.06
9.25
38.82
3.16
391
395
1.198408
CTTGGCGCATATGCATCGATT
59.802
47.619
26.52
0.00
42.21
3.34
413
417
5.006358
CCTTTTGATTGATTACTACGACGGG
59.994
44.000
0.00
0.00
0.00
5.28
460
464
7.698506
TCTCGTTCTTACCTCAATCTCTTTA
57.301
36.000
0.00
0.00
0.00
1.85
462
466
6.591750
TTCTCGTTCTTACCTCAATCTCTT
57.408
37.500
0.00
0.00
0.00
2.85
532
537
7.951530
AGTTTGATTTGCTATGGTCAAAAAG
57.048
32.000
1.46
0.00
40.85
2.27
590
595
4.824537
TGTCATGCTTGCCAACTAAACTTA
59.175
37.500
0.00
0.00
0.00
2.24
670
677
1.616159
AGGCACATTTAGTTGGCGTT
58.384
45.000
0.00
0.00
0.00
4.84
1073
1573
1.800586
GCAGTCGAGATGCAGAAAACA
59.199
47.619
15.76
0.00
43.31
2.83
1229
1732
5.526111
GCGGCAGGATAATAAGTAAACAAGA
59.474
40.000
0.00
0.00
0.00
3.02
1241
1744
1.133976
AGAAGCTTGCGGCAGGATAAT
60.134
47.619
16.93
0.00
44.79
1.28
1291
1794
2.673368
GGCAAACAACGACTAGATCTGG
59.327
50.000
5.18
4.69
0.00
3.86
1315
1819
2.736721
ACAACAAGGTCAATCGACATCG
59.263
45.455
0.00
0.00
44.54
3.84
1326
1830
0.954452
CAAGCCTCCACAACAAGGTC
59.046
55.000
0.00
0.00
34.96
3.85
1330
1834
1.604604
GCTACAAGCCTCCACAACAA
58.395
50.000
0.00
0.00
34.48
2.83
1331
1835
3.322514
GCTACAAGCCTCCACAACA
57.677
52.632
0.00
0.00
34.48
3.33
1653
2203
1.731709
CACAAGCAAATCCGACGATGA
59.268
47.619
0.00
0.00
0.00
2.92
1719
2269
6.312672
CCACAATGTACATACGATGTTTCTCA
59.687
38.462
9.21
3.20
41.63
3.27
1727
2277
6.038161
CACAAATCCCACAATGTACATACGAT
59.962
38.462
9.21
3.40
0.00
3.73
1835
2386
7.659390
CCTCCCAAGATAATAAGACATCAGAAC
59.341
40.741
0.00
0.00
0.00
3.01
1858
2409
3.606595
AGGTTAGCGTTTTAGGTCCTC
57.393
47.619
0.00
0.00
0.00
3.71
1981
2536
6.350445
CCAAGCAAATCAATTAGTAGCAGGTT
60.350
38.462
0.00
0.00
0.00
3.50
1984
2539
6.199937
ACCAAGCAAATCAATTAGTAGCAG
57.800
37.500
0.00
0.00
0.00
4.24
2011
2566
1.424403
TTGAACGTACCTGCATGTCG
58.576
50.000
0.00
5.30
0.00
4.35
2015
2570
3.402628
ACTCTTTGAACGTACCTGCAT
57.597
42.857
0.00
0.00
0.00
3.96
2052
2607
7.543756
TCATTATTACCGCATCGATTATCTCA
58.456
34.615
0.00
0.00
0.00
3.27
2226
2781
1.890979
GCGATGAGCTCCCATGTGG
60.891
63.158
12.15
0.00
44.04
4.17
2325
2880
8.742554
AAAAGAAACCGCATTAAAGATACAAG
57.257
30.769
0.00
0.00
0.00
3.16
2328
2883
8.736751
TGAAAAAGAAACCGCATTAAAGATAC
57.263
30.769
0.00
0.00
0.00
2.24
2552
3110
4.181309
ACCTAATTATCTAGAGCAGCGC
57.819
45.455
0.00
0.00
0.00
5.92
2555
3113
7.870445
GGACTTCAACCTAATTATCTAGAGCAG
59.130
40.741
0.00
0.00
0.00
4.24
2805
3363
3.068448
TGTTGTACGAAACTAGGCTCACA
59.932
43.478
0.00
0.00
0.00
3.58
2835
3393
2.697229
ACTGGAGGCCCGTACTAATTAC
59.303
50.000
0.00
0.00
34.29
1.89
2907
3465
4.202419
ACCTATGTAAGAACACAACTGGCA
60.202
41.667
0.00
0.00
38.78
4.92
3219
3855
3.244700
GCTCCATCATAACCACCATAGCT
60.245
47.826
0.00
0.00
0.00
3.32
3395
4031
7.527796
AGTCATAACTAGGACCATAGCTAGAA
58.472
38.462
0.00
0.00
37.70
2.10
3407
4043
4.402793
GCACCTGAAGAGTCATAACTAGGA
59.597
45.833
0.00
0.00
35.28
2.94
3463
4099
1.689273
CCCTAGCACCATAGAGTCCAC
59.311
57.143
0.00
0.00
0.00
4.02
3734
4392
7.461182
ACAAGCAAAACCTATATAGCAAACA
57.539
32.000
4.04
0.00
0.00
2.83
3736
4394
9.771534
AAAAACAAGCAAAACCTATATAGCAAA
57.228
25.926
4.04
0.00
0.00
3.68
3746
4404
4.393834
ACAACCAAAAACAAGCAAAACCT
58.606
34.783
0.00
0.00
0.00
3.50
3775
4434
4.661993
TGCTGTATGTAAAGCAACTTCG
57.338
40.909
2.44
0.00
46.06
3.79
3786
4445
3.364460
AGGTTGGCAATGCTGTATGTA
57.636
42.857
1.92
0.00
0.00
2.29
3812
4471
3.735240
TCAACAATTGAAAACTGCGATGC
59.265
39.130
13.59
0.00
36.59
3.91
3964
4624
2.821437
CTCCAAACCAGAGGAGGTCTA
58.179
52.381
0.00
0.00
46.11
2.59
3965
4625
1.650528
CTCCAAACCAGAGGAGGTCT
58.349
55.000
0.00
0.00
46.11
3.85
4038
4698
5.438386
TCCCATTCCTATAAACCAAAGGGAT
59.562
40.000
0.00
0.00
36.71
3.85
4039
4699
4.796816
TCCCATTCCTATAAACCAAAGGGA
59.203
41.667
0.00
0.00
39.16
4.20
4040
4700
5.137412
TCCCATTCCTATAAACCAAAGGG
57.863
43.478
0.00
0.00
41.29
3.95
4041
4701
7.290110
GAATCCCATTCCTATAAACCAAAGG
57.710
40.000
0.00
0.00
33.17
3.11
4145
4805
3.004944
GGGTGTTAAATCTTGGTTCGCAA
59.995
43.478
0.00
0.00
0.00
4.85
4148
4808
3.418047
AGGGGTGTTAAATCTTGGTTCG
58.582
45.455
0.00
0.00
0.00
3.95
4180
4840
1.544537
CGTTCAGTTTGGTGGGGATGA
60.545
52.381
0.00
0.00
0.00
2.92
4208
4868
7.378461
CAGATTTAAACAAGTTCGCAAAGCTAA
59.622
33.333
0.00
0.00
0.00
3.09
4209
4869
6.855914
CAGATTTAAACAAGTTCGCAAAGCTA
59.144
34.615
0.00
0.00
0.00
3.32
4210
4870
5.687285
CAGATTTAAACAAGTTCGCAAAGCT
59.313
36.000
0.00
0.00
0.00
3.74
4213
4874
7.476667
TCTTCAGATTTAAACAAGTTCGCAAA
58.523
30.769
0.00
0.00
0.00
3.68
4343
5006
5.051774
CGGAAACATTTTGTTAACAGCAGTG
60.052
40.000
8.56
9.14
40.14
3.66
4352
5015
5.471797
TCTCAGATGCGGAAACATTTTGTTA
59.528
36.000
0.00
0.00
40.14
2.41
4356
5019
6.238842
CCATATCTCAGATGCGGAAACATTTT
60.239
38.462
0.00
0.00
0.00
1.82
4363
5026
3.643320
AGTTCCATATCTCAGATGCGGAA
59.357
43.478
13.24
13.24
0.00
4.30
4369
5032
8.424918
ACGTCAATTTAGTTCCATATCTCAGAT
58.575
33.333
0.00
0.00
0.00
2.90
4396
5059
5.833406
ATCAACCATTGAACGCATGAATA
57.167
34.783
0.00
0.00
43.95
1.75
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.