Multiple sequence alignment - TraesCS6D01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G271900 chr6D 100.000 3668 0 0 1 3668 380707540 380703873 0.000000e+00 6774.0
1 TraesCS6D01G271900 chr6D 87.448 725 75 7 2957 3668 22272548 22271827 0.000000e+00 821.0
2 TraesCS6D01G271900 chr6D 86.483 725 83 6 2957 3668 22506329 22505607 0.000000e+00 782.0
3 TraesCS6D01G271900 chr6D 86.226 726 83 7 2957 3668 22389476 22388754 0.000000e+00 771.0
4 TraesCS6D01G271900 chr6D 89.623 106 7 3 378 479 319246267 319246372 8.260000e-27 132.0
5 TraesCS6D01G271900 chr6D 91.525 59 4 1 319 377 7644309 7644366 3.040000e-11 80.5
6 TraesCS6D01G271900 chr6D 85.938 64 4 3 590 649 437322697 437322635 3.060000e-06 63.9
7 TraesCS6D01G271900 chr6B 92.228 2136 111 23 845 2955 567899114 567897009 0.000000e+00 2974.0
8 TraesCS6D01G271900 chr6B 85.600 125 12 6 671 792 567899374 567899253 3.850000e-25 126.0
9 TraesCS6D01G271900 chr6B 100.000 38 0 0 795 832 567899227 567899190 1.830000e-08 71.3
10 TraesCS6D01G271900 chr6A 91.638 1471 91 22 651 2100 522153558 522152099 0.000000e+00 2006.0
11 TraesCS6D01G271900 chr6A 90.773 802 56 9 2162 2955 522152069 522151278 0.000000e+00 1055.0
12 TraesCS6D01G271900 chr6A 84.615 273 31 9 22 290 555816089 555815824 1.010000e-65 261.0
13 TraesCS6D01G271900 chr6A 82.833 233 33 7 1 229 603087836 603088065 6.210000e-48 202.0
14 TraesCS6D01G271900 chr6A 84.328 134 20 1 2951 3084 324288989 324289121 2.970000e-26 130.0
15 TraesCS6D01G271900 chr3A 88.058 695 80 3 2957 3650 553548007 553548699 0.000000e+00 821.0
16 TraesCS6D01G271900 chr3A 80.242 248 36 11 21 264 743026827 743027065 1.350000e-39 174.0
17 TraesCS6D01G271900 chr3D 87.607 702 69 8 2962 3648 523395627 523396325 0.000000e+00 798.0
18 TraesCS6D01G271900 chr3D 85.714 63 5 3 590 648 513999397 513999335 3.060000e-06 63.9
19 TraesCS6D01G271900 chr3D 85.185 54 4 3 590 639 46629603 46629656 7.000000e-03 52.8
20 TraesCS6D01G271900 chr4B 86.420 729 81 14 2953 3667 95690736 95690012 0.000000e+00 782.0
21 TraesCS6D01G271900 chr4B 85.401 137 19 1 2962 3097 80670721 80670857 1.370000e-29 141.0
22 TraesCS6D01G271900 chr4B 88.496 113 9 2 378 486 273619860 273619972 2.300000e-27 134.0
23 TraesCS6D01G271900 chr2A 85.124 726 92 7 2954 3666 166251373 166252095 0.000000e+00 728.0
24 TraesCS6D01G271900 chr2A 86.377 668 87 4 3003 3668 757083204 757083869 0.000000e+00 726.0
25 TraesCS6D01G271900 chr2A 91.379 58 5 0 319 376 686191996 686191939 3.040000e-11 80.5
26 TraesCS6D01G271900 chr4D 84.627 657 90 9 2957 3605 5796160 5796813 0.000000e+00 643.0
27 TraesCS6D01G271900 chr4D 86.331 139 18 1 2957 3095 122691987 122691850 2.280000e-32 150.0
28 TraesCS6D01G271900 chr7B 81.232 357 45 17 2 349 554350227 554350570 6.040000e-68 268.0
29 TraesCS6D01G271900 chr7B 87.826 115 9 3 378 487 444184025 444184139 2.970000e-26 130.0
30 TraesCS6D01G271900 chr4A 83.916 286 37 8 1 282 577111643 577111363 7.810000e-67 265.0
31 TraesCS6D01G271900 chr4A 90.000 110 6 4 378 482 702148805 702148914 1.780000e-28 137.0
32 TraesCS6D01G271900 chr4A 85.714 63 5 2 590 648 725389100 725389038 3.060000e-06 63.9
33 TraesCS6D01G271900 chr5D 80.912 351 51 14 1 343 112360872 112360530 2.810000e-66 263.0
34 TraesCS6D01G271900 chr5D 82.960 223 23 11 57 272 548866463 548866249 1.740000e-43 187.0
35 TraesCS6D01G271900 chr7D 80.780 359 45 22 1 349 520867123 520867467 3.630000e-65 259.0
36 TraesCS6D01G271900 chr7D 88.060 67 7 1 310 375 242001787 242001721 1.090000e-10 78.7
37 TraesCS6D01G271900 chr7D 89.831 59 2 2 594 648 614184076 614184018 5.080000e-09 73.1
38 TraesCS6D01G271900 chr2D 79.557 406 45 23 1 377 608194640 608195036 4.700000e-64 255.0
39 TraesCS6D01G271900 chr2D 83.955 268 33 10 1 264 6157118 6157379 7.870000e-62 248.0
40 TraesCS6D01G271900 chr2D 86.598 194 22 4 2 193 377109707 377109516 1.030000e-50 211.0
41 TraesCS6D01G271900 chr2D 90.566 106 6 2 378 479 159338626 159338521 1.780000e-28 137.0
42 TraesCS6D01G271900 chr2D 76.836 177 21 13 477 647 584664101 584663939 8.440000e-12 82.4
43 TraesCS6D01G271900 chr1B 83.012 259 30 11 7 260 469171598 469171847 4.770000e-54 222.0
44 TraesCS6D01G271900 chr1B 89.091 110 8 2 378 483 613245941 613246050 2.300000e-27 134.0
45 TraesCS6D01G271900 chr5B 85.646 209 24 5 1 205 565784975 565785181 7.980000e-52 215.0
46 TraesCS6D01G271900 chr2B 91.509 106 5 2 378 479 385566839 385566944 3.820000e-30 143.0
47 TraesCS6D01G271900 chr3B 88.889 108 8 2 378 481 454651868 454651975 2.970000e-26 130.0
48 TraesCS6D01G271900 chr3B 82.927 123 21 0 2954 3076 524956095 524956217 1.080000e-20 111.0
49 TraesCS6D01G271900 chr1D 86.555 119 11 3 381 495 422986450 422986333 3.850000e-25 126.0
50 TraesCS6D01G271900 chr1D 92.453 53 4 0 325 377 203345958 203345906 3.930000e-10 76.8
51 TraesCS6D01G271900 chr7A 88.235 68 6 2 311 377 712087706 712087772 3.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G271900 chr6D 380703873 380707540 3667 True 6774.0 6774 100.000000 1 3668 1 chr6D.!!$R4 3667
1 TraesCS6D01G271900 chr6D 22271827 22272548 721 True 821.0 821 87.448000 2957 3668 1 chr6D.!!$R1 711
2 TraesCS6D01G271900 chr6D 22505607 22506329 722 True 782.0 782 86.483000 2957 3668 1 chr6D.!!$R3 711
3 TraesCS6D01G271900 chr6D 22388754 22389476 722 True 771.0 771 86.226000 2957 3668 1 chr6D.!!$R2 711
4 TraesCS6D01G271900 chr6B 567897009 567899374 2365 True 1057.1 2974 92.609333 671 2955 3 chr6B.!!$R1 2284
5 TraesCS6D01G271900 chr6A 522151278 522153558 2280 True 1530.5 2006 91.205500 651 2955 2 chr6A.!!$R2 2304
6 TraesCS6D01G271900 chr3A 553548007 553548699 692 False 821.0 821 88.058000 2957 3650 1 chr3A.!!$F1 693
7 TraesCS6D01G271900 chr3D 523395627 523396325 698 False 798.0 798 87.607000 2962 3648 1 chr3D.!!$F2 686
8 TraesCS6D01G271900 chr4B 95690012 95690736 724 True 782.0 782 86.420000 2953 3667 1 chr4B.!!$R1 714
9 TraesCS6D01G271900 chr2A 166251373 166252095 722 False 728.0 728 85.124000 2954 3666 1 chr2A.!!$F1 712
10 TraesCS6D01G271900 chr2A 757083204 757083869 665 False 726.0 726 86.377000 3003 3668 1 chr2A.!!$F2 665
11 TraesCS6D01G271900 chr4D 5796160 5796813 653 False 643.0 643 84.627000 2957 3605 1 chr4D.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 627 0.037882 CAAGAAGCTGGACTCGCTGA 60.038 55.0 0.00 0.00 37.87 4.26 F
645 646 0.108138 AAGGCGAGATATATGGGCGC 60.108 55.0 0.00 0.00 46.20 6.53 F
984 1074 0.112995 TGGTGGGTAGACTGTACGGT 59.887 55.0 7.16 7.16 0.00 4.83 F
1813 1916 0.457035 CCTACGCGGCTACAAAGGTA 59.543 55.0 12.47 0.00 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 2216 0.101399 CGAGTCGTATGGCTGCTTCT 59.899 55.0 3.82 0.0 0.0 2.85 R
2109 2221 0.108329 AAACCCGAGTCGTATGGCTG 60.108 55.0 12.31 0.0 0.0 4.85 R
2111 2223 0.108520 TGAAACCCGAGTCGTATGGC 60.109 55.0 12.31 0.0 0.0 4.40 R
3085 3232 0.463654 GCATGCACGGGGACAAGATA 60.464 55.0 14.21 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.994425 ACATGGTGAACATTTTGTCTATACA 57.006 32.000 0.00 0.00 37.84 2.29
29 30 7.816640 ACATGGTGAACATTTTGTCTATACAC 58.183 34.615 0.00 0.00 37.84 2.90
30 31 7.446931 ACATGGTGAACATTTTGTCTATACACA 59.553 33.333 0.00 0.00 37.84 3.72
31 32 7.994425 TGGTGAACATTTTGTCTATACACAT 57.006 32.000 0.00 0.00 34.61 3.21
32 33 8.402798 TGGTGAACATTTTGTCTATACACATT 57.597 30.769 0.00 0.00 34.61 2.71
33 34 8.855110 TGGTGAACATTTTGTCTATACACATTT 58.145 29.630 0.00 0.00 34.61 2.32
52 53 9.719279 ACACATTTAACATTTTTCAAATGCTTG 57.281 25.926 8.77 3.67 40.43 4.01
53 54 9.719279 CACATTTAACATTTTTCAAATGCTTGT 57.281 25.926 8.77 4.15 40.43 3.16
54 55 9.934190 ACATTTAACATTTTTCAAATGCTTGTC 57.066 25.926 8.77 0.00 40.43 3.18
55 56 9.384682 CATTTAACATTTTTCAAATGCTTGTCC 57.615 29.630 8.77 0.00 33.18 4.02
56 57 8.498054 TTTAACATTTTTCAAATGCTTGTCCA 57.502 26.923 8.77 0.00 33.94 4.02
57 58 6.998968 AACATTTTTCAAATGCTTGTCCAA 57.001 29.167 8.77 0.00 33.94 3.53
58 59 6.362210 ACATTTTTCAAATGCTTGTCCAAC 57.638 33.333 8.77 0.00 33.94 3.77
59 60 5.879223 ACATTTTTCAAATGCTTGTCCAACA 59.121 32.000 8.77 0.00 33.94 3.33
60 61 6.543100 ACATTTTTCAAATGCTTGTCCAACAT 59.457 30.769 8.77 0.00 33.94 2.71
61 62 6.998968 TTTTTCAAATGCTTGTCCAACATT 57.001 29.167 0.00 0.00 35.59 2.71
62 63 6.998968 TTTTCAAATGCTTGTCCAACATTT 57.001 29.167 11.40 11.40 43.01 2.32
63 64 6.998968 TTTCAAATGCTTGTCCAACATTTT 57.001 29.167 13.18 0.00 40.94 1.82
64 65 6.998968 TTCAAATGCTTGTCCAACATTTTT 57.001 29.167 13.18 0.34 40.94 1.94
155 156 9.460019 TCATCATTTCTTAATATGTGGTCAACA 57.540 29.630 0.00 0.00 44.79 3.33
200 201 8.907222 ACATTTTCAAAATGCTTGATTAACCT 57.093 26.923 20.72 0.00 0.00 3.50
201 202 9.341078 ACATTTTCAAAATGCTTGATTAACCTT 57.659 25.926 20.72 0.00 0.00 3.50
206 207 8.954950 TCAAAATGCTTGATTAACCTTTTTGA 57.045 26.923 11.87 11.87 38.18 2.69
207 208 9.388506 TCAAAATGCTTGATTAACCTTTTTGAA 57.611 25.926 12.83 3.17 37.87 2.69
213 214 9.474920 TGCTTGATTAACCTTTTTGAATAGTTG 57.525 29.630 0.00 0.00 0.00 3.16
214 215 9.476202 GCTTGATTAACCTTTTTGAATAGTTGT 57.524 29.630 0.00 0.00 0.00 3.32
222 223 9.719355 AACCTTTTTGAATAGTTGTTCAACTTT 57.281 25.926 20.66 12.00 45.04 2.66
223 224 9.719355 ACCTTTTTGAATAGTTGTTCAACTTTT 57.281 25.926 20.66 18.49 45.04 2.27
395 396 9.653287 TTGTAATACCAGAAATACTTGTCAGAG 57.347 33.333 0.00 0.00 0.00 3.35
396 397 9.031537 TGTAATACCAGAAATACTTGTCAGAGA 57.968 33.333 0.00 0.00 0.00 3.10
397 398 9.522804 GTAATACCAGAAATACTTGTCAGAGAG 57.477 37.037 0.00 0.00 0.00 3.20
398 399 7.962995 ATACCAGAAATACTTGTCAGAGAGA 57.037 36.000 0.00 0.00 0.00 3.10
399 400 6.865834 ACCAGAAATACTTGTCAGAGAGAT 57.134 37.500 0.00 0.00 0.00 2.75
400 401 6.638610 ACCAGAAATACTTGTCAGAGAGATG 58.361 40.000 0.00 0.00 0.00 2.90
401 402 6.212388 ACCAGAAATACTTGTCAGAGAGATGT 59.788 38.462 0.00 0.00 0.00 3.06
402 403 7.397476 ACCAGAAATACTTGTCAGAGAGATGTA 59.603 37.037 0.00 0.00 0.00 2.29
403 404 8.420222 CCAGAAATACTTGTCAGAGAGATGTAT 58.580 37.037 0.00 0.00 0.00 2.29
404 405 9.462174 CAGAAATACTTGTCAGAGAGATGTATC 57.538 37.037 4.10 0.00 0.00 2.24
405 406 9.420118 AGAAATACTTGTCAGAGAGATGTATCT 57.580 33.333 0.00 0.00 40.50 1.98
409 410 7.801716 ACTTGTCAGAGAGATGTATCTAGAC 57.198 40.000 0.00 8.91 37.25 2.59
410 411 6.481976 ACTTGTCAGAGAGATGTATCTAGACG 59.518 42.308 0.00 0.00 37.30 4.18
411 412 5.919755 TGTCAGAGAGATGTATCTAGACGT 58.080 41.667 0.00 0.00 37.30 4.34
412 413 7.052142 TGTCAGAGAGATGTATCTAGACGTA 57.948 40.000 0.00 0.00 37.30 3.57
413 414 7.672240 TGTCAGAGAGATGTATCTAGACGTAT 58.328 38.462 0.00 0.00 37.30 3.06
414 415 8.151596 TGTCAGAGAGATGTATCTAGACGTATT 58.848 37.037 0.00 0.00 37.30 1.89
415 416 8.995220 GTCAGAGAGATGTATCTAGACGTATTT 58.005 37.037 0.00 0.00 37.25 1.40
416 417 9.562408 TCAGAGAGATGTATCTAGACGTATTTT 57.438 33.333 0.00 0.00 37.25 1.82
429 430 9.440773 TCTAGACGTATTTTAGTTCTAGACACA 57.559 33.333 0.00 0.00 32.48 3.72
432 433 8.189460 AGACGTATTTTAGTTCTAGACACATCC 58.811 37.037 0.00 0.00 0.00 3.51
433 434 7.833786 ACGTATTTTAGTTCTAGACACATCCA 58.166 34.615 0.00 0.00 0.00 3.41
434 435 8.475639 ACGTATTTTAGTTCTAGACACATCCAT 58.524 33.333 0.00 0.00 0.00 3.41
435 436 9.961265 CGTATTTTAGTTCTAGACACATCCATA 57.039 33.333 0.00 0.00 0.00 2.74
443 444 9.159254 AGTTCTAGACACATCCATATTTATCCA 57.841 33.333 0.00 0.00 0.00 3.41
444 445 9.950496 GTTCTAGACACATCCATATTTATCCAT 57.050 33.333 0.00 0.00 0.00 3.41
449 450 9.512588 AGACACATCCATATTTATCCATTTCTC 57.487 33.333 0.00 0.00 0.00 2.87
450 451 9.512588 GACACATCCATATTTATCCATTTCTCT 57.487 33.333 0.00 0.00 0.00 3.10
451 452 9.293404 ACACATCCATATTTATCCATTTCTCTG 57.707 33.333 0.00 0.00 0.00 3.35
452 453 9.511272 CACATCCATATTTATCCATTTCTCTGA 57.489 33.333 0.00 0.00 0.00 3.27
453 454 9.512588 ACATCCATATTTATCCATTTCTCTGAC 57.487 33.333 0.00 0.00 0.00 3.51
454 455 9.511272 CATCCATATTTATCCATTTCTCTGACA 57.489 33.333 0.00 0.00 0.00 3.58
456 457 9.565090 TCCATATTTATCCATTTCTCTGACAAG 57.435 33.333 0.00 0.00 0.00 3.16
457 458 9.347240 CCATATTTATCCATTTCTCTGACAAGT 57.653 33.333 0.00 0.00 0.00 3.16
463 464 7.872113 ATCCATTTCTCTGACAAGTATTTCC 57.128 36.000 0.00 0.00 0.00 3.13
464 465 5.874810 TCCATTTCTCTGACAAGTATTTCCG 59.125 40.000 0.00 0.00 0.00 4.30
465 466 5.643777 CCATTTCTCTGACAAGTATTTCCGT 59.356 40.000 0.00 0.00 0.00 4.69
466 467 6.816640 CCATTTCTCTGACAAGTATTTCCGTA 59.183 38.462 0.00 0.00 0.00 4.02
467 468 7.201530 CCATTTCTCTGACAAGTATTTCCGTAC 60.202 40.741 0.00 0.00 0.00 3.67
468 469 4.978186 TCTCTGACAAGTATTTCCGTACG 58.022 43.478 8.69 8.69 0.00 3.67
469 470 4.100707 TCTGACAAGTATTTCCGTACGG 57.899 45.455 28.66 28.66 0.00 4.02
470 471 3.758023 TCTGACAAGTATTTCCGTACGGA 59.242 43.478 32.61 32.61 43.52 4.69
471 472 4.100707 TGACAAGTATTTCCGTACGGAG 57.899 45.455 33.67 23.26 46.06 4.63
472 473 3.119388 TGACAAGTATTTCCGTACGGAGG 60.119 47.826 33.67 20.29 46.06 4.30
473 474 2.167075 ACAAGTATTTCCGTACGGAGGG 59.833 50.000 33.67 20.89 46.06 4.30
474 475 2.428171 CAAGTATTTCCGTACGGAGGGA 59.572 50.000 33.67 24.13 46.06 4.20
475 476 2.305009 AGTATTTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
476 477 2.027385 GTATTTCCGTACGGAGGGAGT 58.973 52.381 33.67 20.06 46.06 3.85
477 478 2.442236 ATTTCCGTACGGAGGGAGTA 57.558 50.000 33.67 17.87 46.06 2.59
478 479 2.442236 TTTCCGTACGGAGGGAGTAT 57.558 50.000 33.67 0.00 46.06 2.12
479 480 3.576078 TTTCCGTACGGAGGGAGTATA 57.424 47.619 33.67 16.38 46.06 1.47
480 481 3.795688 TTCCGTACGGAGGGAGTATAT 57.204 47.619 33.67 0.00 46.06 0.86
481 482 4.908601 TTCCGTACGGAGGGAGTATATA 57.091 45.455 33.67 14.90 46.06 0.86
482 483 5.441718 TTCCGTACGGAGGGAGTATATAT 57.558 43.478 33.67 0.00 46.06 0.86
483 484 5.441718 TCCGTACGGAGGGAGTATATATT 57.558 43.478 32.61 0.00 39.76 1.28
484 485 5.819991 TCCGTACGGAGGGAGTATATATTT 58.180 41.667 32.61 0.00 39.76 1.40
485 486 6.957631 TCCGTACGGAGGGAGTATATATTTA 58.042 40.000 32.61 4.50 39.76 1.40
486 487 7.050377 TCCGTACGGAGGGAGTATATATTTAG 58.950 42.308 32.61 0.53 39.76 1.85
487 488 7.050377 CCGTACGGAGGGAGTATATATTTAGA 58.950 42.308 30.64 0.00 37.50 2.10
488 489 7.554118 CCGTACGGAGGGAGTATATATTTAGAA 59.446 40.741 30.64 0.00 37.50 2.10
489 490 9.118300 CGTACGGAGGGAGTATATATTTAGAAT 57.882 37.037 7.57 0.00 0.00 2.40
524 525 9.181805 GTAGAAACAAAAGGACAAAGATAAAGC 57.818 33.333 0.00 0.00 0.00 3.51
525 526 7.781056 AGAAACAAAAGGACAAAGATAAAGCA 58.219 30.769 0.00 0.00 0.00 3.91
526 527 8.257306 AGAAACAAAAGGACAAAGATAAAGCAA 58.743 29.630 0.00 0.00 0.00 3.91
527 528 8.785329 AAACAAAAGGACAAAGATAAAGCAAA 57.215 26.923 0.00 0.00 0.00 3.68
528 529 8.785329 AACAAAAGGACAAAGATAAAGCAAAA 57.215 26.923 0.00 0.00 0.00 2.44
529 530 8.785329 ACAAAAGGACAAAGATAAAGCAAAAA 57.215 26.923 0.00 0.00 0.00 1.94
530 531 8.882736 ACAAAAGGACAAAGATAAAGCAAAAAG 58.117 29.630 0.00 0.00 0.00 2.27
531 532 9.097257 CAAAAGGACAAAGATAAAGCAAAAAGA 57.903 29.630 0.00 0.00 0.00 2.52
532 533 9.665719 AAAAGGACAAAGATAAAGCAAAAAGAA 57.334 25.926 0.00 0.00 0.00 2.52
533 534 9.836864 AAAGGACAAAGATAAAGCAAAAAGAAT 57.163 25.926 0.00 0.00 0.00 2.40
538 539 9.489084 ACAAAGATAAAGCAAAAAGAATAACCC 57.511 29.630 0.00 0.00 0.00 4.11
539 540 9.487790 CAAAGATAAAGCAAAAAGAATAACCCA 57.512 29.630 0.00 0.00 0.00 4.51
540 541 9.710900 AAAGATAAAGCAAAAAGAATAACCCAG 57.289 29.630 0.00 0.00 0.00 4.45
541 542 8.650143 AGATAAAGCAAAAAGAATAACCCAGA 57.350 30.769 0.00 0.00 0.00 3.86
542 543 9.088987 AGATAAAGCAAAAAGAATAACCCAGAA 57.911 29.630 0.00 0.00 0.00 3.02
543 544 9.705290 GATAAAGCAAAAAGAATAACCCAGAAA 57.295 29.630 0.00 0.00 0.00 2.52
545 546 8.800370 AAAGCAAAAAGAATAACCCAGAAAAA 57.200 26.923 0.00 0.00 0.00 1.94
561 562 0.319405 AAAAAGAGGCTGTGGCATGC 59.681 50.000 9.90 9.90 40.87 4.06
588 589 3.760693 TGAGTCGGCTCATTTAGGC 57.239 52.632 17.42 0.00 45.94 3.93
597 598 2.671596 GCTCATTTAGGCTCTAGCTCG 58.328 52.381 1.39 0.00 41.70 5.03
598 599 2.671596 CTCATTTAGGCTCTAGCTCGC 58.328 52.381 1.39 0.00 41.70 5.03
599 600 1.341531 TCATTTAGGCTCTAGCTCGCC 59.658 52.381 12.34 12.34 46.65 5.54
603 604 3.157949 GGCTCTAGCTCGCCCCTT 61.158 66.667 9.77 0.00 40.43 3.95
604 605 2.419620 GCTCTAGCTCGCCCCTTC 59.580 66.667 0.00 0.00 38.21 3.46
605 606 2.427245 GCTCTAGCTCGCCCCTTCA 61.427 63.158 0.00 0.00 38.21 3.02
606 607 1.739049 CTCTAGCTCGCCCCTTCAG 59.261 63.158 0.00 0.00 0.00 3.02
607 608 2.107953 CTAGCTCGCCCCTTCAGC 59.892 66.667 0.00 0.00 0.00 4.26
608 609 2.683572 TAGCTCGCCCCTTCAGCA 60.684 61.111 0.00 0.00 35.46 4.41
609 610 2.244117 CTAGCTCGCCCCTTCAGCAA 62.244 60.000 0.00 0.00 35.46 3.91
610 611 2.244117 TAGCTCGCCCCTTCAGCAAG 62.244 60.000 0.00 0.00 35.46 4.01
611 612 2.665000 CTCGCCCCTTCAGCAAGA 59.335 61.111 0.00 0.00 0.00 3.02
612 613 1.003355 CTCGCCCCTTCAGCAAGAA 60.003 57.895 0.00 0.00 34.41 2.52
623 624 3.172919 GCAAGAAGCTGGACTCGC 58.827 61.111 0.00 0.00 41.15 5.03
624 625 1.375268 GCAAGAAGCTGGACTCGCT 60.375 57.895 0.00 0.00 41.15 4.93
625 626 1.633852 GCAAGAAGCTGGACTCGCTG 61.634 60.000 0.00 0.00 41.15 5.18
626 627 0.037882 CAAGAAGCTGGACTCGCTGA 60.038 55.000 0.00 0.00 37.87 4.26
627 628 0.681733 AAGAAGCTGGACTCGCTGAA 59.318 50.000 0.00 0.00 37.87 3.02
628 629 0.246086 AGAAGCTGGACTCGCTGAAG 59.754 55.000 0.00 0.00 37.87 3.02
629 630 0.739112 GAAGCTGGACTCGCTGAAGG 60.739 60.000 0.00 0.00 37.87 3.46
630 631 2.794820 AAGCTGGACTCGCTGAAGGC 62.795 60.000 0.00 0.00 37.87 4.35
642 643 2.898705 GCTGAAGGCGAGATATATGGG 58.101 52.381 0.00 0.00 0.00 4.00
643 644 2.898705 CTGAAGGCGAGATATATGGGC 58.101 52.381 0.00 0.00 0.00 5.36
644 645 1.204704 TGAAGGCGAGATATATGGGCG 59.795 52.381 0.39 0.00 0.00 6.13
645 646 0.108138 AAGGCGAGATATATGGGCGC 60.108 55.000 0.00 0.00 46.20 6.53
646 647 4.110493 GCGAGATATATGGGCGCC 57.890 61.111 21.18 21.18 41.65 6.53
647 648 1.521681 GCGAGATATATGGGCGCCC 60.522 63.158 39.40 39.40 41.65 6.13
656 657 4.161295 TGGGCGCCCAGATTCGAG 62.161 66.667 44.23 0.00 41.89 4.04
663 664 1.459539 CCCAGATTCGAGGGGCCTA 60.460 63.158 0.84 0.00 41.58 3.93
665 666 0.760945 CCAGATTCGAGGGGCCTACT 60.761 60.000 0.84 0.28 0.00 2.57
679 680 3.332034 GGCCTACTTTCGTTTCTGCTAA 58.668 45.455 0.00 0.00 0.00 3.09
682 683 5.583457 GGCCTACTTTCGTTTCTGCTAATAA 59.417 40.000 0.00 0.00 0.00 1.40
684 685 6.534079 GCCTACTTTCGTTTCTGCTAATAAGA 59.466 38.462 0.00 0.00 0.00 2.10
694 695 3.144506 CTGCTAATAAGACAGGCCCATG 58.855 50.000 0.00 0.00 0.00 3.66
713 715 0.393537 GTCACTCTCCATGGGCCTTG 60.394 60.000 13.02 12.30 0.00 3.61
757 759 4.753107 CCCAATTTACAAGCGATATACCGT 59.247 41.667 0.00 0.00 0.00 4.83
758 760 5.237779 CCCAATTTACAAGCGATATACCGTT 59.762 40.000 0.00 0.00 0.00 4.44
846 880 0.454600 TTACGAGACAGTCCGATGGC 59.545 55.000 15.69 0.00 0.00 4.40
984 1074 0.112995 TGGTGGGTAGACTGTACGGT 59.887 55.000 7.16 7.16 0.00 4.83
1022 1112 2.435410 CTTTACCCCCACGTCGGC 60.435 66.667 0.00 0.00 0.00 5.54
1144 1234 4.505217 CGTCGACGGCTGCATTGC 62.505 66.667 29.70 0.46 35.37 3.56
1267 1363 4.331968 TGTTTGAGCTCCGGATTGTATTT 58.668 39.130 12.15 0.00 0.00 1.40
1268 1364 4.394920 TGTTTGAGCTCCGGATTGTATTTC 59.605 41.667 12.15 0.00 0.00 2.17
1376 1479 2.435059 GTGGCCGAGCAGTCCTTC 60.435 66.667 0.00 0.00 0.00 3.46
1379 1482 2.048127 GCCGAGCAGTCCTTCGTT 60.048 61.111 0.00 0.00 0.00 3.85
1547 1650 0.890996 CCCGCTTCCAGTCTGCTTTT 60.891 55.000 0.00 0.00 0.00 2.27
1556 1659 3.000727 CCAGTCTGCTTTTAAGGTACGG 58.999 50.000 0.00 0.00 0.00 4.02
1557 1660 3.556423 CCAGTCTGCTTTTAAGGTACGGT 60.556 47.826 0.00 0.00 0.00 4.83
1602 1705 2.768253 AATCAGCATCGAGGTTCACA 57.232 45.000 0.00 0.00 0.00 3.58
1813 1916 0.457035 CCTACGCGGCTACAAAGGTA 59.543 55.000 12.47 0.00 0.00 3.08
1825 1928 5.607119 CTACAAAGGTAGCGACATTTTGT 57.393 39.130 24.12 24.12 42.57 2.83
1828 1931 1.890876 AGGTAGCGACATTTTGTGCA 58.109 45.000 0.00 0.00 30.52 4.57
1829 1932 2.226330 AGGTAGCGACATTTTGTGCAA 58.774 42.857 0.00 0.00 30.52 4.08
1830 1933 2.031157 AGGTAGCGACATTTTGTGCAAC 60.031 45.455 0.00 0.00 37.35 4.17
1831 1934 2.031157 GGTAGCGACATTTTGTGCAACT 60.031 45.455 0.00 0.00 38.04 3.16
1835 1938 2.033832 GCGACATTTTGTGCAACTTTGG 60.034 45.455 0.00 0.00 38.04 3.28
1836 1939 2.033832 CGACATTTTGTGCAACTTTGGC 60.034 45.455 0.00 0.00 38.04 4.52
1837 1940 3.197265 GACATTTTGTGCAACTTTGGCT 58.803 40.909 0.00 0.00 38.04 4.75
1838 1941 3.608796 ACATTTTGTGCAACTTTGGCTT 58.391 36.364 0.00 0.00 38.04 4.35
1839 1942 4.009002 ACATTTTGTGCAACTTTGGCTTT 58.991 34.783 0.00 0.00 38.04 3.51
1841 1944 3.325293 TTTGTGCAACTTTGGCTTTCA 57.675 38.095 0.00 0.00 38.04 2.69
1842 1945 3.325293 TTGTGCAACTTTGGCTTTCAA 57.675 38.095 0.00 0.00 38.04 2.69
1844 1947 1.587946 GTGCAACTTTGGCTTTCAACG 59.412 47.619 0.00 0.00 34.67 4.10
1845 1948 1.208259 GCAACTTTGGCTTTCAACGG 58.792 50.000 0.00 0.00 34.67 4.44
1846 1949 1.470805 GCAACTTTGGCTTTCAACGGT 60.471 47.619 0.00 0.00 34.67 4.83
1847 1950 2.223618 GCAACTTTGGCTTTCAACGGTA 60.224 45.455 0.00 0.00 34.67 4.02
1848 1951 3.552068 GCAACTTTGGCTTTCAACGGTAT 60.552 43.478 0.00 0.00 34.67 2.73
1850 1953 4.237349 ACTTTGGCTTTCAACGGTATTG 57.763 40.909 0.00 0.00 34.67 1.90
1851 1954 3.634910 ACTTTGGCTTTCAACGGTATTGT 59.365 39.130 0.00 0.00 34.67 2.71
1853 1956 5.299782 ACTTTGGCTTTCAACGGTATTGTTA 59.700 36.000 0.00 0.00 34.67 2.41
1854 1957 5.769484 TTGGCTTTCAACGGTATTGTTAA 57.231 34.783 0.00 0.00 0.00 2.01
1858 1961 6.207810 TGGCTTTCAACGGTATTGTTAAGAAT 59.792 34.615 3.09 3.09 0.00 2.40
1859 1962 6.526674 GGCTTTCAACGGTATTGTTAAGAATG 59.473 38.462 8.05 0.00 0.00 2.67
1860 1963 7.081976 GCTTTCAACGGTATTGTTAAGAATGT 58.918 34.615 8.05 0.00 0.00 2.71
1861 1964 7.593644 GCTTTCAACGGTATTGTTAAGAATGTT 59.406 33.333 8.05 1.62 0.00 2.71
1862 1965 9.113876 CTTTCAACGGTATTGTTAAGAATGTTC 57.886 33.333 8.05 0.00 0.00 3.18
1864 1967 7.802738 TCAACGGTATTGTTAAGAATGTTCTG 58.197 34.615 8.05 6.29 37.65 3.02
2102 2214 8.312669 TCCCAAATAACCCCAAAATTACATAG 57.687 34.615 0.00 0.00 0.00 2.23
2103 2215 7.901861 TCCCAAATAACCCCAAAATTACATAGT 59.098 33.333 0.00 0.00 0.00 2.12
2104 2216 9.203163 CCCAAATAACCCCAAAATTACATAGTA 57.797 33.333 0.00 0.00 0.00 1.82
2109 2221 7.640597 AACCCCAAAATTACATAGTAGAAGC 57.359 36.000 0.00 0.00 0.00 3.86
2110 2222 6.727394 ACCCCAAAATTACATAGTAGAAGCA 58.273 36.000 0.00 0.00 0.00 3.91
2111 2223 6.828785 ACCCCAAAATTACATAGTAGAAGCAG 59.171 38.462 0.00 0.00 0.00 4.24
2112 2224 6.238759 CCCCAAAATTACATAGTAGAAGCAGC 60.239 42.308 0.00 0.00 0.00 5.25
2113 2225 6.238759 CCCAAAATTACATAGTAGAAGCAGCC 60.239 42.308 0.00 0.00 0.00 4.85
2114 2226 6.318648 CCAAAATTACATAGTAGAAGCAGCCA 59.681 38.462 0.00 0.00 0.00 4.75
2179 2291 4.520492 CACCATTTTTACTCTGTCAGGCTT 59.480 41.667 0.00 0.00 0.00 4.35
2185 2297 4.527509 TTACTCTGTCAGGCTTGAAGAG 57.472 45.455 23.68 23.68 40.50 2.85
2311 2423 0.672711 TCGTCGTCATGGACTCGTCT 60.673 55.000 0.00 0.00 34.75 4.18
2314 2426 1.736126 GTCGTCATGGACTCGTCTGTA 59.264 52.381 0.00 0.00 34.09 2.74
2319 2431 1.135083 CATGGACTCGTCTGTACACCC 60.135 57.143 0.00 0.00 33.06 4.61
2339 2452 2.578495 CAAGACAACGCTCTGCATTTC 58.422 47.619 0.00 0.00 0.00 2.17
2340 2453 2.175878 AGACAACGCTCTGCATTTCT 57.824 45.000 0.00 0.00 0.00 2.52
2374 2489 3.833732 ACTCACACTAACCTCTCTGACA 58.166 45.455 0.00 0.00 0.00 3.58
2544 2659 1.473278 GACTCCTACAACCTCTCCGTG 59.527 57.143 0.00 0.00 0.00 4.94
2556 2671 1.442184 CTCCGTGGTCGAAGTCGTG 60.442 63.158 0.00 0.00 40.80 4.35
2633 2748 2.115911 CGACTCCCTCCAGGACGAG 61.116 68.421 7.12 7.12 40.93 4.18
2690 2805 9.265901 CTGAGAAAAGATTTGAACTCTGTAGAA 57.734 33.333 0.00 0.00 0.00 2.10
2695 2810 8.924511 AAAGATTTGAACTCTGTAGAAATCCA 57.075 30.769 0.00 0.00 34.81 3.41
2725 2840 6.484308 CCATTTCACTGAATTTCCAGCTTTTT 59.516 34.615 0.00 0.00 37.68 1.94
2758 2873 4.378770 CCTGTACAATGTTAGTGCTGCAAG 60.379 45.833 2.77 0.00 0.00 4.01
2799 2915 2.893671 AAAAACGCCGCAAACATCC 58.106 47.368 0.00 0.00 0.00 3.51
2800 2916 0.103208 AAAAACGCCGCAAACATCCA 59.897 45.000 0.00 0.00 0.00 3.41
2810 2926 2.884012 CGCAAACATCCAGGGCATATAA 59.116 45.455 0.00 0.00 0.00 0.98
2812 2928 3.005791 GCAAACATCCAGGGCATATAACC 59.994 47.826 0.00 0.00 0.00 2.85
2815 2931 4.747265 ACATCCAGGGCATATAACCATT 57.253 40.909 0.00 0.00 0.00 3.16
2816 2932 4.410099 ACATCCAGGGCATATAACCATTG 58.590 43.478 0.00 0.00 0.00 2.82
2843 2959 9.678941 GTGGAAAATTAGAAACTGTTTTAGAGG 57.321 33.333 7.28 0.00 0.00 3.69
2844 2960 9.635404 TGGAAAATTAGAAACTGTTTTAGAGGA 57.365 29.630 7.28 0.00 0.00 3.71
2845 2961 9.894783 GGAAAATTAGAAACTGTTTTAGAGGAC 57.105 33.333 7.28 0.00 0.00 3.85
2883 2999 7.447545 AGGTTTAGTTACTGGAAGGAATCAAAC 59.552 37.037 0.00 0.00 40.28 2.93
2895 3013 5.096443 AGGAATCAAACTTGCCACAAAAA 57.904 34.783 0.00 0.00 0.00 1.94
2921 3039 3.181476 ACTGTTTGTGGGACTGAATTTGC 60.181 43.478 0.00 0.00 0.00 3.68
3031 3154 0.176449 GTTTGAGGATGGCAATGGGC 59.824 55.000 0.00 0.00 43.74 5.36
3108 3255 1.184322 TTGTCCCCGTGCATGCAAAT 61.184 50.000 24.58 0.00 0.00 2.32
3129 3276 5.904362 ATGTGAGAAACCAAGGATTTAGC 57.096 39.130 0.00 0.00 0.00 3.09
3131 3278 3.127030 GTGAGAAACCAAGGATTTAGCCG 59.873 47.826 0.00 0.00 0.00 5.52
3132 3279 2.092323 AGAAACCAAGGATTTAGCCGC 58.908 47.619 0.00 0.00 0.00 6.53
3133 3280 0.808755 AAACCAAGGATTTAGCCGCG 59.191 50.000 0.00 0.00 0.00 6.46
3153 3301 1.897398 GCCACGGTTCGCACTAGTTG 61.897 60.000 0.00 0.00 0.00 3.16
3205 3357 0.313672 GTCTCATGCCGGCAACAAAA 59.686 50.000 36.33 15.55 0.00 2.44
3230 3382 3.117452 GCCAGCATAGGAGCCAGCT 62.117 63.158 0.00 0.00 37.95 4.24
3273 3425 2.721231 GCAACAAAGTCAGCGGCA 59.279 55.556 1.45 0.00 0.00 5.69
3344 3497 3.857038 AACGGCCGACACACCAGT 61.857 61.111 35.90 1.64 0.00 4.00
3345 3498 3.394635 AACGGCCGACACACCAGTT 62.395 57.895 35.90 9.43 0.00 3.16
3484 3642 0.666274 TGTCGACACTCATCAACGCC 60.666 55.000 15.76 0.00 0.00 5.68
3511 3669 1.064017 ACCTCCTTGGCTTTTGTGTCA 60.064 47.619 0.00 0.00 40.22 3.58
3512 3670 2.242043 CCTCCTTGGCTTTTGTGTCAT 58.758 47.619 0.00 0.00 0.00 3.06
3656 3814 1.407575 GCTACTCCTTCCCTTTGCTCC 60.408 57.143 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.679661 TGTATAGACAAAATGTTCACCATGTAT 57.320 29.630 0.00 0.00 30.09 2.29
4 5 7.446931 TGTGTATAGACAAAATGTTCACCATGT 59.553 33.333 0.00 0.00 37.31 3.21
5 6 7.815641 TGTGTATAGACAAAATGTTCACCATG 58.184 34.615 0.00 0.00 37.31 3.66
6 7 7.994425 TGTGTATAGACAAAATGTTCACCAT 57.006 32.000 0.00 0.00 37.31 3.55
7 8 7.994425 ATGTGTATAGACAAAATGTTCACCA 57.006 32.000 6.82 0.00 37.31 4.17
26 27 9.719279 CAAGCATTTGAAAAATGTTAAATGTGT 57.281 25.926 12.82 0.00 40.70 3.72
27 28 9.719279 ACAAGCATTTGAAAAATGTTAAATGTG 57.281 25.926 12.82 5.88 40.70 3.21
28 29 9.934190 GACAAGCATTTGAAAAATGTTAAATGT 57.066 25.926 12.82 8.94 40.70 2.71
29 30 9.384682 GGACAAGCATTTGAAAAATGTTAAATG 57.615 29.630 12.82 0.00 41.23 2.32
30 31 9.118300 TGGACAAGCATTTGAAAAATGTTAAAT 57.882 25.926 12.82 0.00 37.73 1.40
31 32 8.498054 TGGACAAGCATTTGAAAAATGTTAAA 57.502 26.923 12.82 0.00 37.73 1.52
32 33 8.394121 GTTGGACAAGCATTTGAAAAATGTTAA 58.606 29.630 12.82 0.00 37.73 2.01
33 34 7.550551 TGTTGGACAAGCATTTGAAAAATGTTA 59.449 29.630 12.82 0.00 37.73 2.41
34 35 6.373774 TGTTGGACAAGCATTTGAAAAATGTT 59.626 30.769 12.82 5.60 37.73 2.71
35 36 5.879223 TGTTGGACAAGCATTTGAAAAATGT 59.121 32.000 12.82 0.00 37.73 2.71
36 37 6.360844 TGTTGGACAAGCATTTGAAAAATG 57.639 33.333 8.09 8.09 37.73 2.32
37 38 7.571080 AATGTTGGACAAGCATTTGAAAAAT 57.429 28.000 0.00 0.00 37.73 1.82
38 39 6.998968 AATGTTGGACAAGCATTTGAAAAA 57.001 29.167 0.00 0.00 37.73 1.94
39 40 6.998968 AAATGTTGGACAAGCATTTGAAAA 57.001 29.167 16.95 0.00 40.14 2.29
40 41 6.998968 AAAATGTTGGACAAGCATTTGAAA 57.001 29.167 17.72 0.00 40.58 2.69
41 42 6.998968 AAAAATGTTGGACAAGCATTTGAA 57.001 29.167 17.72 0.00 40.58 2.69
129 130 9.460019 TGTTGACCACATATTAAGAAATGATGA 57.540 29.630 3.09 0.00 0.00 2.92
174 175 9.995003 AGGTTAATCAAGCATTTTGAAAATGTA 57.005 25.926 25.98 13.40 34.50 2.29
175 176 8.907222 AGGTTAATCAAGCATTTTGAAAATGT 57.093 26.923 25.98 13.74 34.50 2.71
187 188 9.474920 CAACTATTCAAAAAGGTTAATCAAGCA 57.525 29.630 0.00 0.00 34.50 3.91
188 189 9.476202 ACAACTATTCAAAAAGGTTAATCAAGC 57.524 29.630 0.00 0.00 0.00 4.01
369 370 9.653287 CTCTGACAAGTATTTCTGGTATTACAA 57.347 33.333 0.00 0.00 29.08 2.41
370 371 9.031537 TCTCTGACAAGTATTTCTGGTATTACA 57.968 33.333 0.00 0.00 29.08 2.41
371 372 9.522804 CTCTCTGACAAGTATTTCTGGTATTAC 57.477 37.037 0.00 0.00 29.08 1.89
372 373 9.475620 TCTCTCTGACAAGTATTTCTGGTATTA 57.524 33.333 0.00 0.00 29.08 0.98
373 374 8.367660 TCTCTCTGACAAGTATTTCTGGTATT 57.632 34.615 0.00 0.00 29.08 1.89
374 375 7.962995 TCTCTCTGACAAGTATTTCTGGTAT 57.037 36.000 0.00 0.00 29.08 2.73
375 376 7.397476 ACATCTCTCTGACAAGTATTTCTGGTA 59.603 37.037 0.00 0.00 29.08 3.25
376 377 6.212388 ACATCTCTCTGACAAGTATTTCTGGT 59.788 38.462 0.00 0.00 32.12 4.00
377 378 6.638610 ACATCTCTCTGACAAGTATTTCTGG 58.361 40.000 0.00 0.00 0.00 3.86
378 379 9.462174 GATACATCTCTCTGACAAGTATTTCTG 57.538 37.037 0.00 0.00 0.00 3.02
379 380 9.420118 AGATACATCTCTCTGACAAGTATTTCT 57.580 33.333 0.00 0.00 29.30 2.52
383 384 9.502091 GTCTAGATACATCTCTCTGACAAGTAT 57.498 37.037 0.00 0.00 38.32 2.12
384 385 7.654116 CGTCTAGATACATCTCTCTGACAAGTA 59.346 40.741 0.00 0.00 38.32 2.24
385 386 6.481976 CGTCTAGATACATCTCTCTGACAAGT 59.518 42.308 0.00 0.00 38.32 3.16
386 387 6.481976 ACGTCTAGATACATCTCTCTGACAAG 59.518 42.308 0.00 0.00 38.32 3.16
387 388 6.350103 ACGTCTAGATACATCTCTCTGACAA 58.650 40.000 0.00 0.00 38.32 3.18
388 389 5.919755 ACGTCTAGATACATCTCTCTGACA 58.080 41.667 0.00 0.00 38.32 3.58
389 390 8.542497 AATACGTCTAGATACATCTCTCTGAC 57.458 38.462 0.00 1.09 38.32 3.51
390 391 9.562408 AAAATACGTCTAGATACATCTCTCTGA 57.438 33.333 0.00 0.00 38.32 3.27
403 404 9.440773 TGTGTCTAGAACTAAAATACGTCTAGA 57.559 33.333 0.00 4.92 34.28 2.43
406 407 8.189460 GGATGTGTCTAGAACTAAAATACGTCT 58.811 37.037 0.00 0.00 0.00 4.18
407 408 7.972277 TGGATGTGTCTAGAACTAAAATACGTC 59.028 37.037 0.00 0.00 0.00 4.34
408 409 7.833786 TGGATGTGTCTAGAACTAAAATACGT 58.166 34.615 0.00 0.00 0.00 3.57
409 410 8.873215 ATGGATGTGTCTAGAACTAAAATACG 57.127 34.615 0.00 0.00 0.00 3.06
417 418 9.159254 TGGATAAATATGGATGTGTCTAGAACT 57.841 33.333 0.00 0.00 0.00 3.01
418 419 9.950496 ATGGATAAATATGGATGTGTCTAGAAC 57.050 33.333 0.00 0.00 0.00 3.01
423 424 9.512588 GAGAAATGGATAAATATGGATGTGTCT 57.487 33.333 0.00 0.00 0.00 3.41
424 425 9.512588 AGAGAAATGGATAAATATGGATGTGTC 57.487 33.333 0.00 0.00 0.00 3.67
425 426 9.293404 CAGAGAAATGGATAAATATGGATGTGT 57.707 33.333 0.00 0.00 0.00 3.72
426 427 9.511272 TCAGAGAAATGGATAAATATGGATGTG 57.489 33.333 0.00 0.00 0.00 3.21
427 428 9.512588 GTCAGAGAAATGGATAAATATGGATGT 57.487 33.333 0.00 0.00 0.00 3.06
428 429 9.511272 TGTCAGAGAAATGGATAAATATGGATG 57.489 33.333 0.00 0.00 0.00 3.51
430 431 9.565090 CTTGTCAGAGAAATGGATAAATATGGA 57.435 33.333 0.00 0.00 0.00 3.41
431 432 9.347240 ACTTGTCAGAGAAATGGATAAATATGG 57.653 33.333 0.00 0.00 0.00 2.74
437 438 9.396022 GGAAATACTTGTCAGAGAAATGGATAA 57.604 33.333 0.00 0.00 0.00 1.75
438 439 7.710907 CGGAAATACTTGTCAGAGAAATGGATA 59.289 37.037 0.00 0.00 0.00 2.59
439 440 6.540189 CGGAAATACTTGTCAGAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
440 441 5.874810 CGGAAATACTTGTCAGAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
441 442 5.643777 ACGGAAATACTTGTCAGAGAAATGG 59.356 40.000 0.00 0.00 0.00 3.16
442 443 6.727824 ACGGAAATACTTGTCAGAGAAATG 57.272 37.500 0.00 0.00 0.00 2.32
443 444 6.530534 CGTACGGAAATACTTGTCAGAGAAAT 59.469 38.462 7.57 0.00 0.00 2.17
444 445 5.860182 CGTACGGAAATACTTGTCAGAGAAA 59.140 40.000 7.57 0.00 0.00 2.52
445 446 5.396484 CGTACGGAAATACTTGTCAGAGAA 58.604 41.667 7.57 0.00 0.00 2.87
446 447 4.142534 CCGTACGGAAATACTTGTCAGAGA 60.143 45.833 30.64 0.00 37.50 3.10
447 448 4.103357 CCGTACGGAAATACTTGTCAGAG 58.897 47.826 30.64 0.00 37.50 3.35
448 449 3.758023 TCCGTACGGAAATACTTGTCAGA 59.242 43.478 33.96 6.50 42.05 3.27
449 450 4.100707 TCCGTACGGAAATACTTGTCAG 57.899 45.455 33.96 3.20 42.05 3.51
450 451 3.119388 CCTCCGTACGGAAATACTTGTCA 60.119 47.826 34.77 10.83 44.66 3.58
451 452 3.442100 CCTCCGTACGGAAATACTTGTC 58.558 50.000 34.77 0.00 44.66 3.18
452 453 2.167075 CCCTCCGTACGGAAATACTTGT 59.833 50.000 34.77 0.00 44.66 3.16
453 454 2.428171 TCCCTCCGTACGGAAATACTTG 59.572 50.000 34.77 21.77 44.66 3.16
454 455 2.692041 CTCCCTCCGTACGGAAATACTT 59.308 50.000 34.77 0.00 44.66 2.24
455 456 2.305009 CTCCCTCCGTACGGAAATACT 58.695 52.381 34.77 0.00 44.66 2.12
456 457 2.027385 ACTCCCTCCGTACGGAAATAC 58.973 52.381 34.77 0.00 44.66 1.89
457 458 2.442236 ACTCCCTCCGTACGGAAATA 57.558 50.000 34.77 21.70 44.66 1.40
458 459 2.442236 TACTCCCTCCGTACGGAAAT 57.558 50.000 34.77 20.78 44.66 2.17
459 460 2.442236 ATACTCCCTCCGTACGGAAA 57.558 50.000 34.77 22.33 44.66 3.13
460 461 3.795688 ATATACTCCCTCCGTACGGAA 57.204 47.619 34.77 21.13 44.66 4.30
461 462 5.441718 AATATATACTCCCTCCGTACGGA 57.558 43.478 33.55 33.55 42.90 4.69
462 463 7.050377 TCTAAATATATACTCCCTCCGTACGG 58.950 42.308 28.66 28.66 0.00 4.02
463 464 8.498054 TTCTAAATATATACTCCCTCCGTACG 57.502 38.462 8.69 8.69 0.00 3.67
498 499 9.181805 GCTTTATCTTTGTCCTTTTGTTTCTAC 57.818 33.333 0.00 0.00 0.00 2.59
499 500 8.908903 TGCTTTATCTTTGTCCTTTTGTTTCTA 58.091 29.630 0.00 0.00 0.00 2.10
500 501 7.781056 TGCTTTATCTTTGTCCTTTTGTTTCT 58.219 30.769 0.00 0.00 0.00 2.52
501 502 8.419076 TTGCTTTATCTTTGTCCTTTTGTTTC 57.581 30.769 0.00 0.00 0.00 2.78
502 503 8.785329 TTTGCTTTATCTTTGTCCTTTTGTTT 57.215 26.923 0.00 0.00 0.00 2.83
503 504 8.785329 TTTTGCTTTATCTTTGTCCTTTTGTT 57.215 26.923 0.00 0.00 0.00 2.83
504 505 8.785329 TTTTTGCTTTATCTTTGTCCTTTTGT 57.215 26.923 0.00 0.00 0.00 2.83
505 506 9.097257 TCTTTTTGCTTTATCTTTGTCCTTTTG 57.903 29.630 0.00 0.00 0.00 2.44
506 507 9.665719 TTCTTTTTGCTTTATCTTTGTCCTTTT 57.334 25.926 0.00 0.00 0.00 2.27
507 508 9.836864 ATTCTTTTTGCTTTATCTTTGTCCTTT 57.163 25.926 0.00 0.00 0.00 3.11
512 513 9.489084 GGGTTATTCTTTTTGCTTTATCTTTGT 57.511 29.630 0.00 0.00 0.00 2.83
513 514 9.487790 TGGGTTATTCTTTTTGCTTTATCTTTG 57.512 29.630 0.00 0.00 0.00 2.77
514 515 9.710900 CTGGGTTATTCTTTTTGCTTTATCTTT 57.289 29.630 0.00 0.00 0.00 2.52
515 516 9.088987 TCTGGGTTATTCTTTTTGCTTTATCTT 57.911 29.630 0.00 0.00 0.00 2.40
516 517 8.650143 TCTGGGTTATTCTTTTTGCTTTATCT 57.350 30.769 0.00 0.00 0.00 1.98
517 518 9.705290 TTTCTGGGTTATTCTTTTTGCTTTATC 57.295 29.630 0.00 0.00 0.00 1.75
519 520 9.892130 TTTTTCTGGGTTATTCTTTTTGCTTTA 57.108 25.926 0.00 0.00 0.00 1.85
520 521 8.800370 TTTTTCTGGGTTATTCTTTTTGCTTT 57.200 26.923 0.00 0.00 0.00 3.51
542 543 0.319405 GCATGCCACAGCCTCTTTTT 59.681 50.000 6.36 0.00 38.69 1.94
543 544 1.969862 GCATGCCACAGCCTCTTTT 59.030 52.632 6.36 0.00 38.69 2.27
544 545 3.690745 GCATGCCACAGCCTCTTT 58.309 55.556 6.36 0.00 38.69 2.52
571 572 1.410882 AGAGCCTAAATGAGCCGACTC 59.589 52.381 0.00 0.00 43.76 3.36
572 573 1.490574 AGAGCCTAAATGAGCCGACT 58.509 50.000 0.00 0.00 0.00 4.18
573 574 2.864489 GCTAGAGCCTAAATGAGCCGAC 60.864 54.545 0.00 0.00 34.31 4.79
574 575 1.341531 GCTAGAGCCTAAATGAGCCGA 59.658 52.381 0.00 0.00 34.31 5.54
575 576 1.342819 AGCTAGAGCCTAAATGAGCCG 59.657 52.381 0.00 0.00 43.38 5.52
576 577 2.609244 CGAGCTAGAGCCTAAATGAGCC 60.609 54.545 0.00 0.00 43.38 4.70
577 578 2.671596 CGAGCTAGAGCCTAAATGAGC 58.328 52.381 0.00 0.00 43.38 4.26
578 579 2.671596 GCGAGCTAGAGCCTAAATGAG 58.328 52.381 0.00 0.00 43.38 2.90
579 580 2.802787 GCGAGCTAGAGCCTAAATGA 57.197 50.000 0.00 0.00 43.38 2.57
587 588 2.362329 CTGAAGGGGCGAGCTAGAGC 62.362 65.000 0.00 0.00 42.49 4.09
588 589 1.739049 CTGAAGGGGCGAGCTAGAG 59.261 63.158 0.00 0.00 0.00 2.43
589 590 2.427245 GCTGAAGGGGCGAGCTAGA 61.427 63.158 0.00 0.00 0.00 2.43
590 591 2.107953 GCTGAAGGGGCGAGCTAG 59.892 66.667 0.00 0.00 0.00 3.42
591 592 2.244117 CTTGCTGAAGGGGCGAGCTA 62.244 60.000 0.00 0.00 34.90 3.32
592 593 3.618780 CTTGCTGAAGGGGCGAGCT 62.619 63.158 0.00 0.00 34.90 4.09
593 594 3.130160 CTTGCTGAAGGGGCGAGC 61.130 66.667 0.00 0.00 34.90 5.03
594 595 1.003355 TTCTTGCTGAAGGGGCGAG 60.003 57.895 0.00 0.00 41.25 5.03
595 596 1.003355 CTTCTTGCTGAAGGGGCGA 60.003 57.895 10.75 0.00 46.25 5.54
596 597 3.583383 CTTCTTGCTGAAGGGGCG 58.417 61.111 10.75 0.00 46.25 6.13
606 607 1.375268 AGCGAGTCCAGCTTCTTGC 60.375 57.895 12.17 12.17 43.24 4.01
607 608 0.037882 TCAGCGAGTCCAGCTTCTTG 60.038 55.000 0.00 0.00 44.06 3.02
608 609 0.681733 TTCAGCGAGTCCAGCTTCTT 59.318 50.000 0.00 0.00 44.06 2.52
609 610 0.246086 CTTCAGCGAGTCCAGCTTCT 59.754 55.000 0.00 0.00 44.06 2.85
610 611 0.739112 CCTTCAGCGAGTCCAGCTTC 60.739 60.000 0.00 0.00 44.06 3.86
611 612 1.294780 CCTTCAGCGAGTCCAGCTT 59.705 57.895 0.00 0.00 44.06 3.74
613 614 2.817396 GCCTTCAGCGAGTCCAGC 60.817 66.667 0.00 0.00 0.00 4.85
622 623 2.898705 CCCATATATCTCGCCTTCAGC 58.101 52.381 0.00 0.00 38.52 4.26
623 624 2.736719 CGCCCATATATCTCGCCTTCAG 60.737 54.545 0.00 0.00 0.00 3.02
624 625 1.204704 CGCCCATATATCTCGCCTTCA 59.795 52.381 0.00 0.00 0.00 3.02
625 626 1.927895 CGCCCATATATCTCGCCTTC 58.072 55.000 0.00 0.00 0.00 3.46
626 627 0.108138 GCGCCCATATATCTCGCCTT 60.108 55.000 0.00 0.00 39.91 4.35
627 628 1.517832 GCGCCCATATATCTCGCCT 59.482 57.895 0.00 0.00 39.91 5.52
628 629 4.110493 GCGCCCATATATCTCGCC 57.890 61.111 0.00 0.00 39.91 5.54
629 630 1.521681 GGGCGCCCATATATCTCGC 60.522 63.158 40.73 8.02 44.39 5.03
630 631 0.179100 CTGGGCGCCCATATATCTCG 60.179 60.000 46.65 28.91 46.15 4.04
631 632 1.195115 TCTGGGCGCCCATATATCTC 58.805 55.000 46.65 17.80 46.15 2.75
632 633 1.885049 ATCTGGGCGCCCATATATCT 58.115 50.000 46.65 23.14 46.15 1.98
633 634 2.565841 GAATCTGGGCGCCCATATATC 58.434 52.381 46.65 33.34 46.15 1.63
634 635 1.134401 CGAATCTGGGCGCCCATATAT 60.134 52.381 46.65 34.23 46.15 0.86
635 636 0.249120 CGAATCTGGGCGCCCATATA 59.751 55.000 46.65 33.65 46.15 0.86
636 637 1.003355 CGAATCTGGGCGCCCATAT 60.003 57.895 46.65 39.97 46.15 1.78
637 638 2.099652 CTCGAATCTGGGCGCCCATA 62.100 60.000 46.65 39.65 46.15 2.74
638 639 3.466791 CTCGAATCTGGGCGCCCAT 62.467 63.158 46.65 33.76 46.15 4.00
639 640 4.161295 CTCGAATCTGGGCGCCCA 62.161 66.667 44.03 44.03 45.02 5.36
640 641 4.918201 CCTCGAATCTGGGCGCCC 62.918 72.222 39.40 39.40 0.00 6.13
641 642 4.918201 CCCTCGAATCTGGGCGCC 62.918 72.222 21.18 21.18 36.61 6.53
642 643 4.918201 CCCCTCGAATCTGGGCGC 62.918 72.222 0.00 0.00 42.03 6.53
645 646 1.459539 TAGGCCCCTCGAATCTGGG 60.460 63.158 0.00 0.36 42.98 4.45
646 647 0.760945 AGTAGGCCCCTCGAATCTGG 60.761 60.000 0.00 0.00 0.00 3.86
647 648 1.123928 AAGTAGGCCCCTCGAATCTG 58.876 55.000 0.00 0.00 0.00 2.90
648 649 1.763545 GAAAGTAGGCCCCTCGAATCT 59.236 52.381 0.00 0.00 0.00 2.40
649 650 1.538419 CGAAAGTAGGCCCCTCGAATC 60.538 57.143 0.00 0.00 0.00 2.52
650 651 0.464452 CGAAAGTAGGCCCCTCGAAT 59.536 55.000 0.00 0.00 0.00 3.34
651 652 0.901580 ACGAAAGTAGGCCCCTCGAA 60.902 55.000 14.22 0.00 46.88 3.71
652 653 1.304713 ACGAAAGTAGGCCCCTCGA 60.305 57.895 14.22 0.00 46.88 4.04
653 654 3.295800 ACGAAAGTAGGCCCCTCG 58.704 61.111 0.00 3.36 46.88 4.63
663 664 6.369065 CCTGTCTTATTAGCAGAAACGAAAGT 59.631 38.462 0.00 0.00 35.63 2.66
665 666 5.121768 GCCTGTCTTATTAGCAGAAACGAAA 59.878 40.000 0.00 0.00 31.36 3.46
679 680 2.171448 GAGTGACATGGGCCTGTCTTAT 59.829 50.000 25.88 16.59 44.73 1.73
682 683 0.546267 AGAGTGACATGGGCCTGTCT 60.546 55.000 25.88 14.05 44.73 3.41
684 685 1.557269 GGAGAGTGACATGGGCCTGT 61.557 60.000 4.53 6.72 0.00 4.00
694 695 0.393537 CAAGGCCCATGGAGAGTGAC 60.394 60.000 15.22 0.00 0.00 3.67
699 701 1.229951 AGGACAAGGCCCATGGAGA 60.230 57.895 15.22 0.00 0.00 3.71
713 715 4.395231 GGGCTGTTAAATTGTAGACAGGAC 59.605 45.833 10.73 0.00 39.80 3.85
846 880 4.977126 GACGCTATCGGCCGTCGG 62.977 72.222 27.15 16.48 37.90 4.79
984 1074 3.720601 ATGGCTCCGGCTTGCTCA 61.721 61.111 0.00 2.35 38.73 4.26
1200 1290 0.788391 GCGTTACCTTGGTGAACGAG 59.212 55.000 24.31 8.98 46.78 4.18
1531 1634 3.149981 ACCTTAAAAGCAGACTGGAAGC 58.850 45.455 4.26 0.00 37.60 3.86
1547 1650 0.806868 CTGCGAGTGACCGTACCTTA 59.193 55.000 0.00 0.00 0.00 2.69
1556 1659 2.179517 CCGGAGACTGCGAGTGAC 59.820 66.667 18.77 0.00 30.86 3.67
1557 1660 3.749064 GCCGGAGACTGCGAGTGA 61.749 66.667 18.77 0.00 30.86 3.41
1602 1705 2.125512 GGAGAGCGGCGTCATTGT 60.126 61.111 9.37 0.00 0.00 2.71
1813 1916 2.859538 CAAAGTTGCACAAAATGTCGCT 59.140 40.909 0.00 0.00 0.00 4.93
1814 1917 2.033832 CCAAAGTTGCACAAAATGTCGC 60.034 45.455 0.00 0.00 0.00 5.19
1815 1918 2.033832 GCCAAAGTTGCACAAAATGTCG 60.034 45.455 0.00 0.00 0.00 4.35
1816 1919 3.197265 AGCCAAAGTTGCACAAAATGTC 58.803 40.909 0.00 0.00 0.00 3.06
1817 1920 3.264998 AGCCAAAGTTGCACAAAATGT 57.735 38.095 0.00 0.00 0.00 2.71
1822 1925 2.999355 GTTGAAAGCCAAAGTTGCACAA 59.001 40.909 0.00 0.00 36.36 3.33
1823 1926 2.615869 GTTGAAAGCCAAAGTTGCACA 58.384 42.857 0.00 0.00 36.36 4.57
1824 1927 1.587946 CGTTGAAAGCCAAAGTTGCAC 59.412 47.619 0.00 0.00 36.36 4.57
1825 1928 1.470632 CCGTTGAAAGCCAAAGTTGCA 60.471 47.619 0.00 0.00 36.36 4.08
1828 1931 4.098807 ACAATACCGTTGAAAGCCAAAGTT 59.901 37.500 0.00 0.00 36.36 2.66
1829 1932 3.634910 ACAATACCGTTGAAAGCCAAAGT 59.365 39.130 0.00 0.00 36.36 2.66
1830 1933 4.237349 ACAATACCGTTGAAAGCCAAAG 57.763 40.909 0.00 0.00 36.36 2.77
1831 1934 4.657436 AACAATACCGTTGAAAGCCAAA 57.343 36.364 0.00 0.00 36.36 3.28
1835 1938 7.081976 ACATTCTTAACAATACCGTTGAAAGC 58.918 34.615 0.00 0.00 0.00 3.51
1836 1939 9.113876 GAACATTCTTAACAATACCGTTGAAAG 57.886 33.333 0.00 0.00 0.00 2.62
1837 1940 8.842280 AGAACATTCTTAACAATACCGTTGAAA 58.158 29.630 0.00 0.00 32.55 2.69
1838 1941 8.286800 CAGAACATTCTTAACAATACCGTTGAA 58.713 33.333 0.00 0.00 34.74 2.69
1839 1942 7.572353 GCAGAACATTCTTAACAATACCGTTGA 60.572 37.037 0.00 0.00 34.74 3.18
1841 1944 6.349033 GGCAGAACATTCTTAACAATACCGTT 60.349 38.462 0.00 0.00 34.74 4.44
1842 1945 5.123344 GGCAGAACATTCTTAACAATACCGT 59.877 40.000 0.00 0.00 34.74 4.83
1844 1947 6.509418 TGGCAGAACATTCTTAACAATACC 57.491 37.500 0.00 0.00 34.74 2.73
1845 1948 7.009540 GCAATGGCAGAACATTCTTAACAATAC 59.990 37.037 0.00 0.00 38.94 1.89
1846 1949 7.035004 GCAATGGCAGAACATTCTTAACAATA 58.965 34.615 0.00 0.00 38.94 1.90
1847 1950 5.870978 GCAATGGCAGAACATTCTTAACAAT 59.129 36.000 0.00 0.00 38.94 2.71
1848 1951 5.010922 AGCAATGGCAGAACATTCTTAACAA 59.989 36.000 0.00 0.00 44.61 2.83
1850 1953 5.064441 AGCAATGGCAGAACATTCTTAAC 57.936 39.130 0.00 0.00 44.61 2.01
1851 1954 4.766373 TGAGCAATGGCAGAACATTCTTAA 59.234 37.500 0.00 0.00 44.61 1.85
1853 1956 3.057033 GTGAGCAATGGCAGAACATTCTT 60.057 43.478 0.00 0.00 44.61 2.52
1854 1957 2.490903 GTGAGCAATGGCAGAACATTCT 59.509 45.455 0.00 0.00 44.61 2.40
1858 1961 1.072806 AGAGTGAGCAATGGCAGAACA 59.927 47.619 0.00 0.00 44.61 3.18
1859 1962 1.467734 CAGAGTGAGCAATGGCAGAAC 59.532 52.381 0.00 0.00 44.61 3.01
1860 1963 1.817357 CAGAGTGAGCAATGGCAGAA 58.183 50.000 0.00 0.00 44.61 3.02
1861 1964 0.675837 GCAGAGTGAGCAATGGCAGA 60.676 55.000 0.00 0.00 44.61 4.26
1862 1965 0.677098 AGCAGAGTGAGCAATGGCAG 60.677 55.000 0.00 0.00 44.61 4.85
1864 1967 1.801332 CAGCAGAGTGAGCAATGGC 59.199 57.895 0.00 0.00 41.61 4.40
2102 2214 2.733517 GAGTCGTATGGCTGCTTCTAC 58.266 52.381 0.00 0.00 0.00 2.59
2103 2215 1.333931 CGAGTCGTATGGCTGCTTCTA 59.666 52.381 3.82 0.00 0.00 2.10
2104 2216 0.101399 CGAGTCGTATGGCTGCTTCT 59.899 55.000 3.82 0.00 0.00 2.85
2105 2217 0.872021 CCGAGTCGTATGGCTGCTTC 60.872 60.000 12.31 0.00 0.00 3.86
2106 2218 1.141881 CCGAGTCGTATGGCTGCTT 59.858 57.895 12.31 0.00 0.00 3.91
2107 2219 2.786495 CCCGAGTCGTATGGCTGCT 61.786 63.158 12.31 0.00 0.00 4.24
2108 2220 2.279517 CCCGAGTCGTATGGCTGC 60.280 66.667 12.31 0.00 0.00 5.25
2109 2221 0.108329 AAACCCGAGTCGTATGGCTG 60.108 55.000 12.31 0.00 0.00 4.85
2110 2222 0.175073 GAAACCCGAGTCGTATGGCT 59.825 55.000 12.31 0.00 0.00 4.75
2111 2223 0.108520 TGAAACCCGAGTCGTATGGC 60.109 55.000 12.31 0.00 0.00 4.40
2112 2224 2.470821 GATGAAACCCGAGTCGTATGG 58.529 52.381 12.31 8.27 0.00 2.74
2113 2225 2.159156 TGGATGAAACCCGAGTCGTATG 60.159 50.000 12.31 2.09 0.00 2.39
2114 2226 2.104967 TGGATGAAACCCGAGTCGTAT 58.895 47.619 12.31 0.00 0.00 3.06
2179 2291 3.685139 ATCTTGTTCGGAAGCTCTTCA 57.315 42.857 11.27 0.00 41.20 3.02
2185 2297 3.606687 TCCCTTTATCTTGTTCGGAAGC 58.393 45.455 0.00 0.00 0.00 3.86
2311 2423 0.466543 AGCGTTGTCTTGGGTGTACA 59.533 50.000 0.00 0.00 0.00 2.90
2314 2426 0.532862 CAGAGCGTTGTCTTGGGTGT 60.533 55.000 0.00 0.00 0.00 4.16
2319 2431 2.225019 AGAAATGCAGAGCGTTGTCTTG 59.775 45.455 0.00 0.00 37.85 3.02
2339 2452 7.095439 GGTTAGTGTGAGTTCATCTTCAGAAAG 60.095 40.741 0.00 0.00 0.00 2.62
2340 2453 6.706270 GGTTAGTGTGAGTTCATCTTCAGAAA 59.294 38.462 0.00 0.00 0.00 2.52
2374 2489 4.927267 TCCCAGACAGACATGGTTAAAT 57.073 40.909 0.00 0.00 34.58 1.40
2389 2504 0.251916 CCGTACCTGCATTTCCCAGA 59.748 55.000 0.00 0.00 32.03 3.86
2493 2608 2.282462 CTCTGCGCCCACCCTTTT 60.282 61.111 4.18 0.00 0.00 2.27
2544 2659 2.087009 CGGCTTCACGACTTCGACC 61.087 63.158 5.47 0.00 43.02 4.79
2556 2671 1.359459 GAATCACCCGTGACGGCTTC 61.359 60.000 20.39 13.77 46.86 3.86
2633 2748 1.743252 CCAGGGAGAAGCTTGCGAC 60.743 63.158 2.10 0.00 0.00 5.19
2690 2805 6.862469 ATTCAGTGAAATGGACATTGGATT 57.138 33.333 10.14 0.00 0.00 3.01
2695 2810 6.669125 TGGAAATTCAGTGAAATGGACATT 57.331 33.333 10.14 0.00 0.00 2.71
2725 2840 7.439955 CACTAACATTGTACAGGTTACAGAACA 59.560 37.037 14.61 0.72 37.29 3.18
2795 2911 3.765511 CCAATGGTTATATGCCCTGGATG 59.234 47.826 0.00 0.00 32.64 3.51
2799 2915 2.892852 CCACCAATGGTTATATGCCCTG 59.107 50.000 0.16 0.00 41.64 4.45
2800 2916 3.243359 CCACCAATGGTTATATGCCCT 57.757 47.619 0.16 0.00 41.64 5.19
2812 2928 8.661352 AAACAGTTTCTAATTTTCCACCAATG 57.339 30.769 0.00 0.00 0.00 2.82
2815 2931 9.191479 TCTAAAACAGTTTCTAATTTTCCACCA 57.809 29.630 0.00 0.00 0.00 4.17
2816 2932 9.678941 CTCTAAAACAGTTTCTAATTTTCCACC 57.321 33.333 0.00 0.00 0.00 4.61
2849 2965 9.729281 CCTTCCAGTAACTAAACCTTATTAACA 57.271 33.333 0.00 0.00 0.00 2.41
2850 2966 9.948964 TCCTTCCAGTAACTAAACCTTATTAAC 57.051 33.333 0.00 0.00 0.00 2.01
2856 2972 7.086685 TGATTCCTTCCAGTAACTAAACCTT 57.913 36.000 0.00 0.00 0.00 3.50
2867 2983 2.893489 GGCAAGTTTGATTCCTTCCAGT 59.107 45.455 0.00 0.00 0.00 4.00
2909 3027 5.841957 ACTGGATATTGCAAATTCAGTCC 57.158 39.130 20.73 14.54 38.56 3.85
2911 3029 6.435277 AGTCAACTGGATATTGCAAATTCAGT 59.565 34.615 20.73 20.73 43.63 3.41
2921 3039 7.765819 TGTATGAGTTCAGTCAACTGGATATTG 59.234 37.037 10.13 0.00 46.10 1.90
2950 3070 0.890996 GTTGGAGTTGGCCTCAGTGG 60.891 60.000 3.32 0.00 42.40 4.00
3085 3232 0.463654 GCATGCACGGGGACAAGATA 60.464 55.000 14.21 0.00 0.00 1.98
3108 3255 4.079253 GGCTAAATCCTTGGTTTCTCACA 58.921 43.478 0.00 0.00 0.00 3.58
3132 3279 4.728102 TAGTGCGAACCGTGGCCG 62.728 66.667 0.00 0.00 0.00 6.13
3133 3280 2.813908 CTAGTGCGAACCGTGGCC 60.814 66.667 0.00 0.00 0.00 5.36
3177 3328 1.907739 GGCATGAGACTGTAGGCCA 59.092 57.895 5.01 0.00 42.90 5.36
3230 3382 4.564769 GCGTGAAACATGTCCTTTTTGAAA 59.435 37.500 0.00 0.00 35.74 2.69
3273 3425 2.441822 GAAGGCTGGCTCGTGTGTCT 62.442 60.000 3.48 0.00 0.00 3.41
3328 3481 2.430382 CTAACTGGTGTGTCGGCCGT 62.430 60.000 27.15 3.57 0.00 5.68
3335 3488 3.290948 TTTGAAGGCTAACTGGTGTGT 57.709 42.857 0.00 0.00 0.00 3.72
3344 3497 1.883926 GCGGTCCTTTTTGAAGGCTAA 59.116 47.619 0.28 0.00 39.80 3.09
3345 3498 1.530323 GCGGTCCTTTTTGAAGGCTA 58.470 50.000 0.28 0.00 39.80 3.93
3472 3630 1.672356 GGCACTGGCGTTGATGAGT 60.672 57.895 0.00 0.00 42.47 3.41
3511 3669 1.071385 GAGATCGAGGCCACCAATGAT 59.929 52.381 5.01 0.00 0.00 2.45
3512 3670 0.465705 GAGATCGAGGCCACCAATGA 59.534 55.000 5.01 0.00 0.00 2.57
3639 3797 0.988063 GAGGAGCAAAGGGAAGGAGT 59.012 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.