Multiple sequence alignment - TraesCS6D01G271400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G271400 chr6D 100.000 3223 0 0 1 3223 380565089 380568311 0.000000e+00 5952.0
1 TraesCS6D01G271400 chr6D 84.033 1334 192 18 430 1755 380594313 380592993 0.000000e+00 1264.0
2 TraesCS6D01G271400 chr6D 79.571 1493 209 49 290 1754 380577179 380575755 0.000000e+00 979.0
3 TraesCS6D01G271400 chr6D 82.373 1163 152 28 222 1367 380495347 380496473 0.000000e+00 963.0
4 TraesCS6D01G271400 chr6D 83.961 717 87 19 1758 2458 380575876 380575172 0.000000e+00 662.0
5 TraesCS6D01G271400 chr6D 85.789 577 70 8 1763 2337 380496897 380497463 4.600000e-168 601.0
6 TraesCS6D01G271400 chr6D 86.248 509 62 6 1758 2263 380593113 380592610 2.190000e-151 545.0
7 TraesCS6D01G271400 chr6D 95.868 121 4 1 1636 1755 380566845 380566965 9.120000e-46 195.0
8 TraesCS6D01G271400 chr6D 97.826 46 1 0 3122 3167 470617270 470617225 2.670000e-11 80.5
9 TraesCS6D01G271400 chr6B 93.193 1895 84 15 2 1866 567843712 567845591 0.000000e+00 2743.0
10 TraesCS6D01G271400 chr6B 90.244 1148 66 15 1637 2781 567845595 567846699 0.000000e+00 1458.0
11 TraesCS6D01G271400 chr6B 81.287 1523 212 44 258 1755 567764746 567766220 0.000000e+00 1166.0
12 TraesCS6D01G271400 chr6B 84.974 579 75 7 1763 2337 567766105 567766675 7.750000e-161 577.0
13 TraesCS6D01G271400 chr6B 82.560 539 68 16 1934 2458 567854136 567853610 4.900000e-123 451.0
14 TraesCS6D01G271400 chr6B 86.431 339 40 5 1421 1754 567856035 567855698 1.830000e-97 366.0
15 TraesCS6D01G271400 chr6B 93.388 121 7 1 1636 1755 567845716 567845836 9.190000e-41 178.0
16 TraesCS6D01G271400 chr6A 92.703 1576 61 14 330 1877 522044339 522045888 0.000000e+00 2224.0
17 TraesCS6D01G271400 chr6A 93.664 868 34 8 1651 2513 522046034 522046885 0.000000e+00 1279.0
18 TraesCS6D01G271400 chr6A 83.724 682 82 15 1758 2421 522060851 522060181 4.570000e-173 617.0
19 TraesCS6D01G271400 chr6A 80.895 581 89 20 1184 1754 522061298 522060730 3.820000e-119 438.0
20 TraesCS6D01G271400 chr6A 83.093 485 59 9 482 964 522061963 522061500 1.380000e-113 420.0
21 TraesCS6D01G271400 chr6A 94.650 243 12 1 1636 1877 522045768 522046010 3.040000e-100 375.0
22 TraesCS6D01G271400 chr6A 90.873 252 7 8 1637 1877 522045891 522046137 1.120000e-84 324.0
23 TraesCS6D01G271400 chr6A 94.958 119 6 0 11 129 522038252 522038370 1.530000e-43 187.0
24 TraesCS6D01G271400 chr6A 80.973 226 31 7 2904 3126 522052374 522052590 5.530000e-38 169.0
25 TraesCS6D01G271400 chr6A 82.569 218 11 8 127 343 522038633 522038824 1.990000e-37 167.0
26 TraesCS6D01G271400 chr6A 95.604 91 3 1 1666 1755 522046160 522046250 9.320000e-31 145.0
27 TraesCS6D01G271400 chr1B 81.818 352 43 10 2078 2416 56615153 56615496 3.170000e-70 276.0
28 TraesCS6D01G271400 chr7B 73.333 840 157 35 524 1340 513771533 513770738 6.900000e-62 248.0
29 TraesCS6D01G271400 chr7A 79.718 355 58 8 497 838 554491530 554491177 8.930000e-61 244.0
30 TraesCS6D01G271400 chr7A 94.000 50 2 1 3118 3167 186544565 186544613 1.240000e-09 75.0
31 TraesCS6D01G271400 chr2D 97.872 47 0 1 3121 3167 449559421 449559466 2.670000e-11 80.5
32 TraesCS6D01G271400 chrUn 97.778 45 1 0 3123 3167 341236050 341236006 9.590000e-11 78.7
33 TraesCS6D01G271400 chr5B 97.778 45 1 0 3123 3167 392048035 392047991 9.590000e-11 78.7
34 TraesCS6D01G271400 chr5B 97.778 45 1 0 3123 3167 392106776 392106732 9.590000e-11 78.7
35 TraesCS6D01G271400 chr2B 92.593 54 1 3 3116 3167 181117994 181117942 1.240000e-09 75.0
36 TraesCS6D01G271400 chr4B 87.500 64 6 2 3105 3167 139144869 139144807 4.460000e-09 73.1
37 TraesCS6D01G271400 chr4B 92.453 53 1 3 3115 3167 145840520 145840569 4.460000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G271400 chr6D 380565089 380568311 3222 False 3073.500000 5952 97.934000 1 3223 2 chr6D.!!$F2 3222
1 TraesCS6D01G271400 chr6D 380592610 380594313 1703 True 904.500000 1264 85.140500 430 2263 2 chr6D.!!$R3 1833
2 TraesCS6D01G271400 chr6D 380575172 380577179 2007 True 820.500000 979 81.766000 290 2458 2 chr6D.!!$R2 2168
3 TraesCS6D01G271400 chr6D 380495347 380497463 2116 False 782.000000 963 84.081000 222 2337 2 chr6D.!!$F1 2115
4 TraesCS6D01G271400 chr6B 567843712 567846699 2987 False 1459.666667 2743 92.275000 2 2781 3 chr6B.!!$F2 2779
5 TraesCS6D01G271400 chr6B 567764746 567766675 1929 False 871.500000 1166 83.130500 258 2337 2 chr6B.!!$F1 2079
6 TraesCS6D01G271400 chr6B 567853610 567856035 2425 True 408.500000 451 84.495500 1421 2458 2 chr6B.!!$R1 1037
7 TraesCS6D01G271400 chr6A 522044339 522046885 2546 False 869.400000 2224 93.498800 330 2513 5 chr6A.!!$F3 2183
8 TraesCS6D01G271400 chr6A 522060181 522061963 1782 True 491.666667 617 82.570667 482 2421 3 chr6A.!!$R1 1939
9 TraesCS6D01G271400 chr7B 513770738 513771533 795 True 248.000000 248 73.333000 524 1340 1 chr7B.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 447 2.283966 CGTCTCCACCCCACTCCT 60.284 66.667 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 4840 0.614812 TGAAGCATAGCACAGCCAGA 59.385 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.960384 TGCCAATAAATCAGGATGCAGG 59.040 45.455 0.00 0.00 34.76 4.85
191 192 4.270153 TGGTCTGTCCAGGGGGCT 62.270 66.667 0.00 0.00 41.93 5.19
192 193 3.403558 GGTCTGTCCAGGGGGCTC 61.404 72.222 0.00 0.00 35.97 4.70
193 194 2.284995 GTCTGTCCAGGGGGCTCT 60.285 66.667 0.00 0.00 0.00 4.09
250 268 8.931385 AATAATTGAAAGAACATTCCATTCCG 57.069 30.769 0.00 0.00 30.17 4.30
419 447 2.283966 CGTCTCCACCCCACTCCT 60.284 66.667 0.00 0.00 0.00 3.69
425 453 3.775654 CACCCCACTCCTCTCCGC 61.776 72.222 0.00 0.00 0.00 5.54
428 456 2.363018 CCCACTCCTCTCCGCTCA 60.363 66.667 0.00 0.00 0.00 4.26
905 951 3.916544 CATCCTCCGCTGCGCCTA 61.917 66.667 18.00 3.07 0.00 3.93
1150 1249 1.677217 GCGTGCTCCTCTGGATTTTCT 60.677 52.381 0.00 0.00 0.00 2.52
1269 1380 1.065273 GATTGCTCATGCGCCCAAG 59.935 57.895 4.18 0.00 43.34 3.61
1341 1452 4.449068 GGCGACAATGTCATTGAGGTATAG 59.551 45.833 28.28 9.91 42.83 1.31
1397 1686 7.397476 TGCTAATCCCTAATGTGTATAGAGAGG 59.603 40.741 0.00 0.00 0.00 3.69
1399 1688 5.074746 TCCCTAATGTGTATAGAGAGGCA 57.925 43.478 0.00 0.00 0.00 4.75
1400 1689 5.464069 TCCCTAATGTGTATAGAGAGGCAA 58.536 41.667 0.00 0.00 0.00 4.52
1447 1755 3.132646 TGCTTCTTTTGGTGCATTGTTCT 59.867 39.130 0.00 0.00 0.00 3.01
1608 1918 0.654683 GCTGCACATCGAGGTGAATC 59.345 55.000 32.36 15.47 41.32 2.52
1609 1919 2.008543 GCTGCACATCGAGGTGAATCA 61.009 52.381 32.36 19.40 41.32 2.57
1610 1920 2.349590 CTGCACATCGAGGTGAATCAA 58.650 47.619 32.36 11.26 41.32 2.57
1611 1921 2.743664 CTGCACATCGAGGTGAATCAAA 59.256 45.455 32.36 9.62 41.32 2.69
1612 1922 2.743664 TGCACATCGAGGTGAATCAAAG 59.256 45.455 32.36 4.96 41.32 2.77
1613 1923 2.744202 GCACATCGAGGTGAATCAAAGT 59.256 45.455 32.36 0.00 41.32 2.66
1614 1924 3.425359 GCACATCGAGGTGAATCAAAGTG 60.425 47.826 32.36 3.20 41.32 3.16
1633 1953 2.159327 GCCCCATGCATTTATTCAGC 57.841 50.000 0.00 0.00 40.77 4.26
1737 2551 9.911788 ATTTACTGATATGATGTTCCAGTCTTT 57.088 29.630 0.00 0.00 38.76 2.52
1779 2600 4.705023 GGTTATTTGGCACTCATACCACTT 59.295 41.667 0.00 0.00 35.10 3.16
1791 2612 7.484959 GCACTCATACCACTTTTTATTAGCAAC 59.515 37.037 0.00 0.00 0.00 4.17
1793 2614 7.079182 TCATACCACTTTTTATTAGCAACGG 57.921 36.000 0.00 0.00 0.00 4.44
1988 4425 6.697455 GGAACAAAGTTGAACTTGAATTCCTC 59.303 38.462 25.61 12.67 38.66 3.71
2111 4548 2.584391 GGTGGCTCTCTCGGGTGTT 61.584 63.158 0.00 0.00 0.00 3.32
2118 4555 1.221840 CTCTCGGGTGTTCCATGGG 59.778 63.158 13.02 0.00 34.36 4.00
2155 4592 3.322862 TGATGGTGCTAGGCCCTAAATA 58.677 45.455 0.00 0.00 0.00 1.40
2211 4648 0.673437 TACCGTCGACGACCCTTTTT 59.327 50.000 37.65 13.57 43.02 1.94
2321 4771 4.556699 GCACTGTTTAGTTTGTAGGCAAGG 60.557 45.833 0.00 0.00 34.07 3.61
2328 4778 6.623979 TTAGTTTGTAGGCAAGGGTATGTA 57.376 37.500 0.00 0.00 35.82 2.29
2389 4840 1.000506 AGTACGCGTGGAAGTGTTGAT 59.999 47.619 24.59 0.00 36.19 2.57
2513 4965 9.098355 CTGGCGCTTTTATTTCTGCTATATATA 57.902 33.333 7.64 0.00 0.00 0.86
2514 4966 9.613428 TGGCGCTTTTATTTCTGCTATATATAT 57.387 29.630 7.64 0.00 0.00 0.86
2527 4979 7.348080 TGCTATATATATTTCGTAGCAGCCT 57.652 36.000 11.45 0.00 41.82 4.58
2528 4980 8.459911 TGCTATATATATTTCGTAGCAGCCTA 57.540 34.615 11.45 0.00 41.82 3.93
2529 4981 9.078990 TGCTATATATATTTCGTAGCAGCCTAT 57.921 33.333 11.45 0.00 41.82 2.57
2530 4982 9.915629 GCTATATATATTTCGTAGCAGCCTATT 57.084 33.333 0.00 0.00 38.08 1.73
2551 5003 8.621286 CCTATTTATTAGGTGTTGCTTGGTAAG 58.379 37.037 0.00 0.00 42.40 2.34
2572 5024 2.819608 GCCAGCTAACTTTGTTGGATCA 59.180 45.455 9.70 0.00 37.91 2.92
2574 5026 4.616835 GCCAGCTAACTTTGTTGGATCAAG 60.617 45.833 9.70 0.00 37.91 3.02
2579 5031 9.113838 CAGCTAACTTTGTTGGATCAAGTATAT 57.886 33.333 0.00 0.00 0.00 0.86
2584 5036 9.959721 AACTTTGTTGGATCAAGTATATAGTGT 57.040 29.630 0.00 0.00 0.00 3.55
2621 5073 1.464734 TCGTTCCAGTCAGCCTAGAG 58.535 55.000 0.00 0.00 0.00 2.43
2640 5092 3.260380 AGAGCTGTTGATCAAGTAGCACT 59.740 43.478 30.88 28.15 35.43 4.40
2642 5094 5.047021 AGAGCTGTTGATCAAGTAGCACTTA 60.047 40.000 30.88 0.70 36.03 2.24
2649 5101 8.506437 TGTTGATCAAGTAGCACTTAAATCAAG 58.494 33.333 22.18 6.60 43.02 3.02
2657 5109 7.848128 AGTAGCACTTAAATCAAGCTTAGGTA 58.152 34.615 0.00 0.00 37.83 3.08
2676 5128 3.866327 GGTAGAAAGAACGATCTGCCTTC 59.134 47.826 0.00 0.00 42.94 3.46
2677 5129 3.971245 AGAAAGAACGATCTGCCTTCT 57.029 42.857 0.00 0.00 35.59 2.85
2716 5168 5.688807 AGCTAATCTGCATATTGACCACTT 58.311 37.500 7.53 0.00 34.99 3.16
2717 5169 6.125029 AGCTAATCTGCATATTGACCACTTT 58.875 36.000 7.53 0.00 34.99 2.66
2718 5170 6.604795 AGCTAATCTGCATATTGACCACTTTT 59.395 34.615 7.53 0.00 34.99 2.27
2721 5173 3.126858 TCTGCATATTGACCACTTTTCGC 59.873 43.478 0.00 0.00 0.00 4.70
2723 5175 2.479560 GCATATTGACCACTTTTCGCCC 60.480 50.000 0.00 0.00 0.00 6.13
2732 5184 2.343101 CACTTTTCGCCCAGATCGTAA 58.657 47.619 0.00 0.00 0.00 3.18
2740 5192 2.000447 GCCCAGATCGTAACACTTCAC 59.000 52.381 0.00 0.00 0.00 3.18
2746 5198 5.333513 CAGATCGTAACACTTCACTAGACC 58.666 45.833 0.00 0.00 0.00 3.85
2754 5206 2.501223 CTTCACTAGACCGCCGCCAA 62.501 60.000 0.00 0.00 0.00 4.52
2756 5208 3.307906 ACTAGACCGCCGCCAACA 61.308 61.111 0.00 0.00 0.00 3.33
2762 5214 3.726517 CCGCCGCCAACACAAGAG 61.727 66.667 0.00 0.00 0.00 2.85
2767 5219 0.676466 CCGCCAACACAAGAGCCATA 60.676 55.000 0.00 0.00 0.00 2.74
2768 5220 0.729116 CGCCAACACAAGAGCCATAG 59.271 55.000 0.00 0.00 0.00 2.23
2769 5221 0.453390 GCCAACACAAGAGCCATAGC 59.547 55.000 0.00 0.00 40.32 2.97
2770 5222 1.098050 CCAACACAAGAGCCATAGCC 58.902 55.000 0.00 0.00 41.25 3.93
2781 5233 2.202797 CATAGCCAGTCGTGCGCT 60.203 61.111 9.73 0.00 35.27 5.92
2782 5234 2.202797 ATAGCCAGTCGTGCGCTG 60.203 61.111 9.73 0.40 33.70 5.18
2787 5239 2.049156 CAGTCGTGCGCTGGAAGA 60.049 61.111 9.73 0.00 34.07 2.87
2788 5240 1.664649 CAGTCGTGCGCTGGAAGAA 60.665 57.895 9.73 0.00 34.07 2.52
2789 5241 1.373497 AGTCGTGCGCTGGAAGAAG 60.373 57.895 9.73 0.00 34.07 2.85
2790 5242 1.372997 GTCGTGCGCTGGAAGAAGA 60.373 57.895 9.73 0.00 34.07 2.87
2791 5243 1.080501 TCGTGCGCTGGAAGAAGAG 60.081 57.895 9.73 0.00 34.07 2.85
2792 5244 2.734673 CGTGCGCTGGAAGAAGAGC 61.735 63.158 9.73 0.00 42.62 4.09
2793 5245 1.375268 GTGCGCTGGAAGAAGAGCT 60.375 57.895 9.73 0.00 42.74 4.09
2794 5246 1.375140 TGCGCTGGAAGAAGAGCTG 60.375 57.895 9.73 0.00 42.74 4.24
2795 5247 2.105466 GCGCTGGAAGAAGAGCTGG 61.105 63.158 0.00 0.00 39.59 4.85
2796 5248 1.593787 CGCTGGAAGAAGAGCTGGA 59.406 57.895 0.00 0.00 34.07 3.86
2797 5249 0.036952 CGCTGGAAGAAGAGCTGGAA 60.037 55.000 0.00 0.00 34.07 3.53
2798 5250 1.406614 CGCTGGAAGAAGAGCTGGAAT 60.407 52.381 0.00 0.00 34.07 3.01
2799 5251 2.720915 GCTGGAAGAAGAGCTGGAATT 58.279 47.619 0.00 0.00 34.07 2.17
2800 5252 2.422832 GCTGGAAGAAGAGCTGGAATTG 59.577 50.000 0.00 0.00 34.07 2.32
2801 5253 3.683802 CTGGAAGAAGAGCTGGAATTGT 58.316 45.455 0.00 0.00 34.07 2.71
2802 5254 4.077822 CTGGAAGAAGAGCTGGAATTGTT 58.922 43.478 0.00 0.00 34.07 2.83
2803 5255 4.473444 TGGAAGAAGAGCTGGAATTGTTT 58.527 39.130 0.00 0.00 0.00 2.83
2804 5256 4.895297 TGGAAGAAGAGCTGGAATTGTTTT 59.105 37.500 0.00 0.00 0.00 2.43
2805 5257 5.363580 TGGAAGAAGAGCTGGAATTGTTTTT 59.636 36.000 0.00 0.00 0.00 1.94
2806 5258 5.923114 GGAAGAAGAGCTGGAATTGTTTTTC 59.077 40.000 0.00 0.00 0.00 2.29
2807 5259 5.459536 AGAAGAGCTGGAATTGTTTTTCC 57.540 39.130 0.00 0.00 44.60 3.13
2808 5260 5.143369 AGAAGAGCTGGAATTGTTTTTCCT 58.857 37.500 0.00 0.00 44.63 3.36
2809 5261 5.600069 AGAAGAGCTGGAATTGTTTTTCCTT 59.400 36.000 0.00 0.00 44.63 3.36
2810 5262 5.205759 AGAGCTGGAATTGTTTTTCCTTG 57.794 39.130 0.00 0.17 44.63 3.61
2811 5263 3.732212 AGCTGGAATTGTTTTTCCTTGC 58.268 40.909 4.96 8.58 44.63 4.01
2812 5264 2.807967 GCTGGAATTGTTTTTCCTTGCC 59.192 45.455 4.96 0.00 44.63 4.52
2813 5265 3.059166 CTGGAATTGTTTTTCCTTGCCG 58.941 45.455 4.96 0.00 44.63 5.69
2814 5266 2.695666 TGGAATTGTTTTTCCTTGCCGA 59.304 40.909 4.96 0.00 44.63 5.54
2815 5267 3.243704 TGGAATTGTTTTTCCTTGCCGAG 60.244 43.478 4.96 0.00 44.63 4.63
2816 5268 6.299436 TGGAATTGTTTTTCCTTGCCGAGG 62.299 45.833 4.96 0.00 44.63 4.63
2835 5287 2.460669 GGAAATTTCCCAGGATGCTGT 58.539 47.619 24.44 0.00 41.62 4.40
2836 5288 3.631250 GGAAATTTCCCAGGATGCTGTA 58.369 45.455 24.44 0.00 41.62 2.74
2837 5289 4.218312 GGAAATTTCCCAGGATGCTGTAT 58.782 43.478 24.44 0.00 41.62 2.29
2838 5290 4.651045 GGAAATTTCCCAGGATGCTGTATT 59.349 41.667 24.44 4.70 41.62 1.89
2839 5291 5.221322 GGAAATTTCCCAGGATGCTGTATTC 60.221 44.000 24.44 7.64 41.62 1.75
2840 5292 4.803329 ATTTCCCAGGATGCTGTATTCT 57.197 40.909 13.65 0.00 31.97 2.40
2841 5293 4.591321 TTTCCCAGGATGCTGTATTCTT 57.409 40.909 13.65 0.00 31.97 2.52
2842 5294 4.591321 TTCCCAGGATGCTGTATTCTTT 57.409 40.909 13.65 0.00 31.97 2.52
2843 5295 4.156455 TCCCAGGATGCTGTATTCTTTC 57.844 45.455 13.65 0.00 31.97 2.62
2844 5296 3.523157 TCCCAGGATGCTGTATTCTTTCA 59.477 43.478 13.65 0.00 31.97 2.69
2845 5297 3.629398 CCCAGGATGCTGTATTCTTTCAC 59.371 47.826 13.65 0.00 31.97 3.18
2846 5298 3.310774 CCAGGATGCTGTATTCTTTCACG 59.689 47.826 13.65 0.00 31.97 4.35
2847 5299 3.935203 CAGGATGCTGTATTCTTTCACGT 59.065 43.478 5.98 0.00 0.00 4.49
2848 5300 4.393062 CAGGATGCTGTATTCTTTCACGTT 59.607 41.667 5.98 0.00 0.00 3.99
2849 5301 5.003804 AGGATGCTGTATTCTTTCACGTTT 58.996 37.500 0.00 0.00 0.00 3.60
2850 5302 5.473504 AGGATGCTGTATTCTTTCACGTTTT 59.526 36.000 0.00 0.00 0.00 2.43
2851 5303 6.016276 AGGATGCTGTATTCTTTCACGTTTTT 60.016 34.615 0.00 0.00 0.00 1.94
2852 5304 6.088085 GGATGCTGTATTCTTTCACGTTTTTG 59.912 38.462 0.00 0.00 0.00 2.44
2853 5305 6.125327 TGCTGTATTCTTTCACGTTTTTGA 57.875 33.333 0.00 0.00 0.00 2.69
2854 5306 6.198687 TGCTGTATTCTTTCACGTTTTTGAG 58.801 36.000 0.00 0.00 0.00 3.02
2855 5307 6.037720 TGCTGTATTCTTTCACGTTTTTGAGA 59.962 34.615 0.00 0.00 0.00 3.27
2856 5308 6.910433 GCTGTATTCTTTCACGTTTTTGAGAA 59.090 34.615 0.00 0.00 0.00 2.87
2857 5309 7.591426 GCTGTATTCTTTCACGTTTTTGAGAAT 59.409 33.333 11.64 11.64 29.99 2.40
2858 5310 8.781067 TGTATTCTTTCACGTTTTTGAGAATG 57.219 30.769 14.63 5.58 28.59 2.67
2859 5311 7.860373 TGTATTCTTTCACGTTTTTGAGAATGG 59.140 33.333 14.63 1.42 28.59 3.16
2860 5312 6.443934 TTCTTTCACGTTTTTGAGAATGGA 57.556 33.333 0.00 0.00 0.00 3.41
2861 5313 6.443934 TCTTTCACGTTTTTGAGAATGGAA 57.556 33.333 0.00 0.00 0.00 3.53
2862 5314 6.494842 TCTTTCACGTTTTTGAGAATGGAAG 58.505 36.000 0.00 0.00 0.00 3.46
2863 5315 6.317642 TCTTTCACGTTTTTGAGAATGGAAGA 59.682 34.615 0.00 0.00 0.00 2.87
2864 5316 6.443934 TTCACGTTTTTGAGAATGGAAGAA 57.556 33.333 0.00 0.00 0.00 2.52
2865 5317 6.060028 TCACGTTTTTGAGAATGGAAGAAG 57.940 37.500 0.00 0.00 0.00 2.85
2866 5318 5.820423 TCACGTTTTTGAGAATGGAAGAAGA 59.180 36.000 0.00 0.00 0.00 2.87
2867 5319 6.017934 TCACGTTTTTGAGAATGGAAGAAGAG 60.018 38.462 0.00 0.00 0.00 2.85
2868 5320 5.149977 CGTTTTTGAGAATGGAAGAAGAGC 58.850 41.667 0.00 0.00 0.00 4.09
2869 5321 5.049129 CGTTTTTGAGAATGGAAGAAGAGCT 60.049 40.000 0.00 0.00 0.00 4.09
2870 5322 6.147821 CGTTTTTGAGAATGGAAGAAGAGCTA 59.852 38.462 0.00 0.00 0.00 3.32
2871 5323 7.525759 GTTTTTGAGAATGGAAGAAGAGCTAG 58.474 38.462 0.00 0.00 0.00 3.42
2872 5324 6.611613 TTTGAGAATGGAAGAAGAGCTAGA 57.388 37.500 0.00 0.00 0.00 2.43
2873 5325 6.611613 TTGAGAATGGAAGAAGAGCTAGAA 57.388 37.500 0.00 0.00 0.00 2.10
2874 5326 5.971763 TGAGAATGGAAGAAGAGCTAGAAC 58.028 41.667 0.00 0.00 0.00 3.01
2875 5327 5.105146 TGAGAATGGAAGAAGAGCTAGAACC 60.105 44.000 0.00 0.00 0.00 3.62
2876 5328 3.810310 ATGGAAGAAGAGCTAGAACCG 57.190 47.619 0.00 0.00 0.00 4.44
2877 5329 2.526432 TGGAAGAAGAGCTAGAACCGT 58.474 47.619 0.00 0.00 0.00 4.83
2878 5330 3.693807 TGGAAGAAGAGCTAGAACCGTA 58.306 45.455 0.00 0.00 0.00 4.02
2879 5331 4.279145 TGGAAGAAGAGCTAGAACCGTAT 58.721 43.478 0.00 0.00 0.00 3.06
2880 5332 5.443283 TGGAAGAAGAGCTAGAACCGTATA 58.557 41.667 0.00 0.00 0.00 1.47
2881 5333 5.531659 TGGAAGAAGAGCTAGAACCGTATAG 59.468 44.000 0.00 0.00 0.00 1.31
2882 5334 5.441709 AAGAAGAGCTAGAACCGTATAGC 57.558 43.478 0.00 7.35 43.59 2.97
2883 5335 3.822167 AGAAGAGCTAGAACCGTATAGCC 59.178 47.826 10.59 4.89 44.20 3.93
2884 5336 2.152830 AGAGCTAGAACCGTATAGCCG 58.847 52.381 10.59 0.00 44.20 5.52
2885 5337 1.878734 GAGCTAGAACCGTATAGCCGT 59.121 52.381 10.59 0.00 44.20 5.68
2886 5338 3.070018 GAGCTAGAACCGTATAGCCGTA 58.930 50.000 10.59 0.00 44.20 4.02
2887 5339 3.480470 AGCTAGAACCGTATAGCCGTAA 58.520 45.455 10.59 0.00 44.20 3.18
2888 5340 3.251972 AGCTAGAACCGTATAGCCGTAAC 59.748 47.826 10.59 0.00 44.20 2.50
2889 5341 3.003689 GCTAGAACCGTATAGCCGTAACA 59.996 47.826 0.00 0.00 38.41 2.41
2890 5342 3.427161 AGAACCGTATAGCCGTAACAC 57.573 47.619 0.00 0.00 0.00 3.32
2891 5343 3.019564 AGAACCGTATAGCCGTAACACT 58.980 45.455 0.00 0.00 0.00 3.55
2892 5344 3.445096 AGAACCGTATAGCCGTAACACTT 59.555 43.478 0.00 0.00 0.00 3.16
2893 5345 4.640201 AGAACCGTATAGCCGTAACACTTA 59.360 41.667 0.00 0.00 0.00 2.24
2894 5346 4.981806 ACCGTATAGCCGTAACACTTAA 57.018 40.909 0.00 0.00 0.00 1.85
2895 5347 4.672409 ACCGTATAGCCGTAACACTTAAC 58.328 43.478 0.00 0.00 0.00 2.01
2896 5348 4.399303 ACCGTATAGCCGTAACACTTAACT 59.601 41.667 0.00 0.00 0.00 2.24
2897 5349 5.588648 ACCGTATAGCCGTAACACTTAACTA 59.411 40.000 0.00 0.00 0.00 2.24
2898 5350 6.094881 ACCGTATAGCCGTAACACTTAACTAA 59.905 38.462 0.00 0.00 0.00 2.24
2899 5351 6.972328 CCGTATAGCCGTAACACTTAACTAAA 59.028 38.462 0.00 0.00 0.00 1.85
2900 5352 7.649306 CCGTATAGCCGTAACACTTAACTAAAT 59.351 37.037 0.00 0.00 0.00 1.40
2901 5353 9.023967 CGTATAGCCGTAACACTTAACTAAATT 57.976 33.333 0.00 0.00 0.00 1.82
2903 5355 5.934921 AGCCGTAACACTTAACTAAATTGC 58.065 37.500 0.00 0.00 0.00 3.56
2904 5356 5.090757 GCCGTAACACTTAACTAAATTGCC 58.909 41.667 0.00 0.00 0.00 4.52
2905 5357 5.106436 GCCGTAACACTTAACTAAATTGCCT 60.106 40.000 0.00 0.00 0.00 4.75
2906 5358 6.540205 CCGTAACACTTAACTAAATTGCCTC 58.460 40.000 0.00 0.00 0.00 4.70
2907 5359 6.402875 CCGTAACACTTAACTAAATTGCCTCC 60.403 42.308 0.00 0.00 0.00 4.30
2908 5360 6.370718 CGTAACACTTAACTAAATTGCCTCCT 59.629 38.462 0.00 0.00 0.00 3.69
2909 5361 7.094933 CGTAACACTTAACTAAATTGCCTCCTT 60.095 37.037 0.00 0.00 0.00 3.36
2910 5362 6.575162 ACACTTAACTAAATTGCCTCCTTG 57.425 37.500 0.00 0.00 0.00 3.61
2911 5363 5.048013 ACACTTAACTAAATTGCCTCCTTGC 60.048 40.000 0.00 0.00 0.00 4.01
2912 5364 5.183904 CACTTAACTAAATTGCCTCCTTGCT 59.816 40.000 0.00 0.00 0.00 3.91
2913 5365 5.183904 ACTTAACTAAATTGCCTCCTTGCTG 59.816 40.000 0.00 0.00 0.00 4.41
2914 5366 3.439857 ACTAAATTGCCTCCTTGCTGA 57.560 42.857 0.00 0.00 0.00 4.26
2915 5367 3.350833 ACTAAATTGCCTCCTTGCTGAG 58.649 45.455 0.00 0.00 0.00 3.35
2928 5380 4.771590 CTTGCTGAGGATGCTGTAAAAA 57.228 40.909 0.00 0.00 0.00 1.94
2929 5381 5.320549 CTTGCTGAGGATGCTGTAAAAAT 57.679 39.130 0.00 0.00 0.00 1.82
2930 5382 6.441093 CTTGCTGAGGATGCTGTAAAAATA 57.559 37.500 0.00 0.00 0.00 1.40
2931 5383 6.832520 TTGCTGAGGATGCTGTAAAAATAA 57.167 33.333 0.00 0.00 0.00 1.40
2932 5384 7.408756 TTGCTGAGGATGCTGTAAAAATAAT 57.591 32.000 0.00 0.00 0.00 1.28
2933 5385 7.408756 TGCTGAGGATGCTGTAAAAATAATT 57.591 32.000 0.00 0.00 0.00 1.40
2934 5386 7.483307 TGCTGAGGATGCTGTAAAAATAATTC 58.517 34.615 0.00 0.00 0.00 2.17
2935 5387 6.920210 GCTGAGGATGCTGTAAAAATAATTCC 59.080 38.462 0.00 0.00 0.00 3.01
2936 5388 7.416664 GCTGAGGATGCTGTAAAAATAATTCCA 60.417 37.037 0.00 0.00 0.00 3.53
2937 5389 7.771183 TGAGGATGCTGTAAAAATAATTCCAC 58.229 34.615 0.00 0.00 0.00 4.02
2938 5390 6.795399 AGGATGCTGTAAAAATAATTCCACG 58.205 36.000 0.00 0.00 0.00 4.94
2939 5391 5.977129 GGATGCTGTAAAAATAATTCCACGG 59.023 40.000 0.00 0.00 0.00 4.94
2940 5392 5.968528 TGCTGTAAAAATAATTCCACGGT 57.031 34.783 0.00 0.00 0.00 4.83
2941 5393 6.334102 TGCTGTAAAAATAATTCCACGGTT 57.666 33.333 0.00 0.00 0.00 4.44
2942 5394 6.750148 TGCTGTAAAAATAATTCCACGGTTT 58.250 32.000 0.00 0.00 0.00 3.27
2943 5395 7.210873 TGCTGTAAAAATAATTCCACGGTTTT 58.789 30.769 0.00 0.00 0.00 2.43
2944 5396 7.169982 TGCTGTAAAAATAATTCCACGGTTTTG 59.830 33.333 0.00 0.00 0.00 2.44
2945 5397 7.382759 GCTGTAAAAATAATTCCACGGTTTTGA 59.617 33.333 0.00 0.00 0.00 2.69
2946 5398 8.804688 TGTAAAAATAATTCCACGGTTTTGAG 57.195 30.769 0.00 0.00 0.00 3.02
2947 5399 8.630917 TGTAAAAATAATTCCACGGTTTTGAGA 58.369 29.630 0.00 0.00 0.00 3.27
2948 5400 9.465985 GTAAAAATAATTCCACGGTTTTGAGAA 57.534 29.630 0.00 0.00 0.00 2.87
2950 5402 8.532977 AAAATAATTCCACGGTTTTGAGAATG 57.467 30.769 0.00 0.00 0.00 2.67
2951 5403 4.519540 AATTCCACGGTTTTGAGAATGG 57.480 40.909 0.00 0.00 0.00 3.16
2952 5404 2.940994 TCCACGGTTTTGAGAATGGA 57.059 45.000 0.00 0.00 33.86 3.41
2953 5405 3.216187 TCCACGGTTTTGAGAATGGAA 57.784 42.857 0.00 0.00 33.34 3.53
2954 5406 3.146066 TCCACGGTTTTGAGAATGGAAG 58.854 45.455 0.00 0.00 33.34 3.46
2955 5407 3.146066 CCACGGTTTTGAGAATGGAAGA 58.854 45.455 0.00 0.00 0.00 2.87
2956 5408 3.568007 CCACGGTTTTGAGAATGGAAGAA 59.432 43.478 0.00 0.00 0.00 2.52
2957 5409 4.537015 CACGGTTTTGAGAATGGAAGAAC 58.463 43.478 0.00 0.00 0.00 3.01
2958 5410 4.036262 CACGGTTTTGAGAATGGAAGAACA 59.964 41.667 0.00 0.00 0.00 3.18
2959 5411 4.275936 ACGGTTTTGAGAATGGAAGAACAG 59.724 41.667 0.00 0.00 0.00 3.16
2960 5412 4.320494 CGGTTTTGAGAATGGAAGAACAGG 60.320 45.833 0.00 0.00 0.00 4.00
2961 5413 4.550422 GTTTTGAGAATGGAAGAACAGGC 58.450 43.478 0.00 0.00 0.00 4.85
2962 5414 2.496899 TGAGAATGGAAGAACAGGCC 57.503 50.000 0.00 0.00 0.00 5.19
2963 5415 1.004745 TGAGAATGGAAGAACAGGCCC 59.995 52.381 0.00 0.00 0.00 5.80
2964 5416 1.004745 GAGAATGGAAGAACAGGCCCA 59.995 52.381 0.00 0.00 0.00 5.36
2965 5417 1.428912 AGAATGGAAGAACAGGCCCAA 59.571 47.619 0.00 0.00 31.77 4.12
2966 5418 1.821136 GAATGGAAGAACAGGCCCAAG 59.179 52.381 0.00 0.00 31.77 3.61
2967 5419 0.040204 ATGGAAGAACAGGCCCAAGG 59.960 55.000 0.00 0.00 31.77 3.61
2985 5437 2.570365 GCAGATGTTGGCATGGTGA 58.430 52.632 0.00 0.00 35.07 4.02
2986 5438 1.108776 GCAGATGTTGGCATGGTGAT 58.891 50.000 0.00 0.00 35.07 3.06
2987 5439 1.066605 GCAGATGTTGGCATGGTGATC 59.933 52.381 0.00 0.00 35.07 2.92
2988 5440 1.679680 CAGATGTTGGCATGGTGATCC 59.320 52.381 0.00 0.00 35.07 3.36
2989 5441 1.567649 AGATGTTGGCATGGTGATCCT 59.432 47.619 0.00 0.00 35.07 3.24
2990 5442 1.952296 GATGTTGGCATGGTGATCCTC 59.048 52.381 0.00 0.00 35.07 3.71
2991 5443 0.392863 TGTTGGCATGGTGATCCTCG 60.393 55.000 0.00 0.00 34.23 4.63
2992 5444 0.107703 GTTGGCATGGTGATCCTCGA 60.108 55.000 0.00 0.00 34.23 4.04
2993 5445 0.617935 TTGGCATGGTGATCCTCGAA 59.382 50.000 0.00 0.00 34.23 3.71
2994 5446 0.178767 TGGCATGGTGATCCTCGAAG 59.821 55.000 0.00 0.00 34.23 3.79
2995 5447 1.162800 GGCATGGTGATCCTCGAAGC 61.163 60.000 0.00 0.00 34.23 3.86
2996 5448 0.462581 GCATGGTGATCCTCGAAGCA 60.463 55.000 0.00 0.00 34.23 3.91
2997 5449 2.013563 GCATGGTGATCCTCGAAGCAA 61.014 52.381 0.00 0.00 34.23 3.91
2998 5450 2.358957 CATGGTGATCCTCGAAGCAAA 58.641 47.619 0.00 0.00 34.23 3.68
2999 5451 2.099141 TGGTGATCCTCGAAGCAAAG 57.901 50.000 0.00 0.00 34.23 2.77
3000 5452 1.339055 TGGTGATCCTCGAAGCAAAGG 60.339 52.381 0.00 0.00 34.23 3.11
3001 5453 0.729690 GTGATCCTCGAAGCAAAGGC 59.270 55.000 0.00 0.00 41.61 4.35
3005 5457 1.374758 CCTCGAAGCAAAGGCGTCT 60.375 57.895 0.00 0.00 44.92 4.18
3006 5458 0.108804 CCTCGAAGCAAAGGCGTCTA 60.109 55.000 0.00 0.00 44.92 2.59
3007 5459 1.471676 CCTCGAAGCAAAGGCGTCTAT 60.472 52.381 0.00 0.00 44.92 1.98
3008 5460 1.855360 CTCGAAGCAAAGGCGTCTATC 59.145 52.381 0.00 0.00 44.92 2.08
3009 5461 1.203758 TCGAAGCAAAGGCGTCTATCA 59.796 47.619 0.00 0.00 44.92 2.15
3010 5462 1.999735 CGAAGCAAAGGCGTCTATCAA 59.000 47.619 0.00 0.00 44.92 2.57
3011 5463 2.415168 CGAAGCAAAGGCGTCTATCAAA 59.585 45.455 0.00 0.00 44.92 2.69
3012 5464 3.120338 CGAAGCAAAGGCGTCTATCAAAA 60.120 43.478 0.00 0.00 44.92 2.44
3013 5465 4.612712 CGAAGCAAAGGCGTCTATCAAAAA 60.613 41.667 0.00 0.00 44.92 1.94
3014 5466 6.614129 CGAAGCAAAGGCGTCTATCAAAAAC 61.614 44.000 0.00 0.00 44.92 2.43
3015 5467 3.242518 GCAAAGGCGTCTATCAAAAACC 58.757 45.455 0.00 0.00 0.00 3.27
3016 5468 3.057526 GCAAAGGCGTCTATCAAAAACCT 60.058 43.478 0.00 0.00 0.00 3.50
3017 5469 4.723248 CAAAGGCGTCTATCAAAAACCTC 58.277 43.478 0.00 0.00 0.00 3.85
3018 5470 2.987232 AGGCGTCTATCAAAAACCTCC 58.013 47.619 0.00 0.00 0.00 4.30
3019 5471 2.304761 AGGCGTCTATCAAAAACCTCCA 59.695 45.455 0.00 0.00 0.00 3.86
3020 5472 3.054361 AGGCGTCTATCAAAAACCTCCAT 60.054 43.478 0.00 0.00 0.00 3.41
3021 5473 3.312697 GGCGTCTATCAAAAACCTCCATC 59.687 47.826 0.00 0.00 0.00 3.51
3022 5474 4.192317 GCGTCTATCAAAAACCTCCATCT 58.808 43.478 0.00 0.00 0.00 2.90
3023 5475 5.357257 GCGTCTATCAAAAACCTCCATCTA 58.643 41.667 0.00 0.00 0.00 1.98
3024 5476 5.815740 GCGTCTATCAAAAACCTCCATCTAA 59.184 40.000 0.00 0.00 0.00 2.10
3025 5477 6.483640 GCGTCTATCAAAAACCTCCATCTAAT 59.516 38.462 0.00 0.00 0.00 1.73
3026 5478 7.012421 GCGTCTATCAAAAACCTCCATCTAATT 59.988 37.037 0.00 0.00 0.00 1.40
3027 5479 8.338259 CGTCTATCAAAAACCTCCATCTAATTG 58.662 37.037 0.00 0.00 0.00 2.32
3028 5480 8.624776 GTCTATCAAAAACCTCCATCTAATTGG 58.375 37.037 0.00 0.00 38.18 3.16
3029 5481 5.659440 TCAAAAACCTCCATCTAATTGGC 57.341 39.130 0.00 0.00 36.66 4.52
3030 5482 5.332743 TCAAAAACCTCCATCTAATTGGCT 58.667 37.500 0.00 0.00 36.66 4.75
3031 5483 6.489603 TCAAAAACCTCCATCTAATTGGCTA 58.510 36.000 0.00 0.00 36.66 3.93
3032 5484 6.377146 TCAAAAACCTCCATCTAATTGGCTAC 59.623 38.462 0.00 0.00 36.66 3.58
3033 5485 5.450818 AAACCTCCATCTAATTGGCTACA 57.549 39.130 0.00 0.00 36.66 2.74
3034 5486 5.450818 AACCTCCATCTAATTGGCTACAA 57.549 39.130 0.00 0.00 41.59 2.41
3035 5487 5.041191 ACCTCCATCTAATTGGCTACAAG 57.959 43.478 0.00 0.00 40.49 3.16
3036 5488 4.141390 ACCTCCATCTAATTGGCTACAAGG 60.141 45.833 0.00 0.00 40.49 3.61
3037 5489 3.817647 CTCCATCTAATTGGCTACAAGGC 59.182 47.826 0.00 0.00 40.49 4.35
3045 5497 1.210155 GGCTACAAGGCAAGTTGCG 59.790 57.895 21.11 10.45 46.21 4.85
3046 5498 1.515521 GGCTACAAGGCAAGTTGCGT 61.516 55.000 21.11 19.08 46.21 5.24
3047 5499 1.153353 GCTACAAGGCAAGTTGCGTA 58.847 50.000 22.30 16.42 46.21 4.42
3048 5500 1.136057 GCTACAAGGCAAGTTGCGTAC 60.136 52.381 22.30 8.85 46.21 3.67
3049 5501 2.139917 CTACAAGGCAAGTTGCGTACA 58.860 47.619 22.30 10.20 46.21 2.90
3050 5502 0.944386 ACAAGGCAAGTTGCGTACAG 59.056 50.000 22.30 16.86 46.21 2.74
3051 5503 1.225855 CAAGGCAAGTTGCGTACAGA 58.774 50.000 22.30 0.00 46.21 3.41
3052 5504 1.195448 CAAGGCAAGTTGCGTACAGAG 59.805 52.381 22.30 7.72 46.21 3.35
3053 5505 0.951040 AGGCAAGTTGCGTACAGAGC 60.951 55.000 20.85 4.89 46.21 4.09
3054 5506 1.227999 GGCAAGTTGCGTACAGAGCA 61.228 55.000 21.11 0.00 46.21 4.26
3061 5513 2.526304 TGCGTACAGAGCAACTTTCT 57.474 45.000 0.00 0.00 42.18 2.52
3062 5514 2.833794 TGCGTACAGAGCAACTTTCTT 58.166 42.857 0.00 0.00 42.18 2.52
3063 5515 3.202906 TGCGTACAGAGCAACTTTCTTT 58.797 40.909 0.00 0.00 42.18 2.52
3064 5516 3.002246 TGCGTACAGAGCAACTTTCTTTG 59.998 43.478 0.00 0.00 42.18 2.77
3065 5517 3.247648 GCGTACAGAGCAACTTTCTTTGA 59.752 43.478 0.00 0.00 34.19 2.69
3066 5518 4.083802 GCGTACAGAGCAACTTTCTTTGAT 60.084 41.667 0.00 0.00 34.19 2.57
3067 5519 5.560953 GCGTACAGAGCAACTTTCTTTGATT 60.561 40.000 0.00 0.00 34.19 2.57
3068 5520 6.430451 CGTACAGAGCAACTTTCTTTGATTT 58.570 36.000 0.00 0.00 0.00 2.17
3069 5521 7.572759 CGTACAGAGCAACTTTCTTTGATTTA 58.427 34.615 0.00 0.00 0.00 1.40
3070 5522 8.067784 CGTACAGAGCAACTTTCTTTGATTTAA 58.932 33.333 0.00 0.00 0.00 1.52
3071 5523 9.170584 GTACAGAGCAACTTTCTTTGATTTAAC 57.829 33.333 0.00 0.00 0.00 2.01
3072 5524 7.203218 ACAGAGCAACTTTCTTTGATTTAACC 58.797 34.615 0.00 0.00 0.00 2.85
3073 5525 6.642540 CAGAGCAACTTTCTTTGATTTAACCC 59.357 38.462 0.00 0.00 0.00 4.11
3074 5526 5.853936 AGCAACTTTCTTTGATTTAACCCC 58.146 37.500 0.00 0.00 0.00 4.95
3075 5527 5.602561 AGCAACTTTCTTTGATTTAACCCCT 59.397 36.000 0.00 0.00 0.00 4.79
3076 5528 6.099701 AGCAACTTTCTTTGATTTAACCCCTT 59.900 34.615 0.00 0.00 0.00 3.95
3077 5529 6.765989 GCAACTTTCTTTGATTTAACCCCTTT 59.234 34.615 0.00 0.00 0.00 3.11
3078 5530 7.282224 GCAACTTTCTTTGATTTAACCCCTTTT 59.718 33.333 0.00 0.00 0.00 2.27
3079 5531 9.173021 CAACTTTCTTTGATTTAACCCCTTTTT 57.827 29.630 0.00 0.00 0.00 1.94
3151 5603 4.457834 TTTTCAAAACGGAGGCAAAAGA 57.542 36.364 0.00 0.00 0.00 2.52
3152 5604 4.664150 TTTCAAAACGGAGGCAAAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
3153 5605 4.664150 TTCAAAACGGAGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
3154 5606 4.664150 TCAAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
3155 5607 4.367450 TCAAAACGGAGGCAAAAGATTTG 58.633 39.130 0.00 0.00 0.00 2.32
3156 5608 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
3168 5620 7.838771 GCAAAAGATTTGCCTCATCTATTTT 57.161 32.000 15.12 0.00 39.38 1.82
3169 5621 8.260270 GCAAAAGATTTGCCTCATCTATTTTT 57.740 30.769 15.12 0.00 39.38 1.94
3170 5622 9.369904 GCAAAAGATTTGCCTCATCTATTTTTA 57.630 29.630 15.12 0.00 39.38 1.52
3201 5653 9.893305 ATTTATCACTAGCTTAAAAACACACAC 57.107 29.630 0.00 0.00 0.00 3.82
3202 5654 8.671384 TTATCACTAGCTTAAAAACACACACT 57.329 30.769 0.00 0.00 0.00 3.55
3203 5655 9.767228 TTATCACTAGCTTAAAAACACACACTA 57.233 29.630 0.00 0.00 0.00 2.74
3204 5656 7.709269 TCACTAGCTTAAAAACACACACTAG 57.291 36.000 0.00 0.00 33.68 2.57
3205 5657 6.704493 TCACTAGCTTAAAAACACACACTAGG 59.296 38.462 0.00 0.00 32.13 3.02
3206 5658 6.704493 CACTAGCTTAAAAACACACACTAGGA 59.296 38.462 0.00 0.00 32.13 2.94
3207 5659 7.225931 CACTAGCTTAAAAACACACACTAGGAA 59.774 37.037 0.00 0.00 32.13 3.36
3208 5660 7.771826 ACTAGCTTAAAAACACACACTAGGAAA 59.228 33.333 0.00 0.00 32.13 3.13
3209 5661 6.792326 AGCTTAAAAACACACACTAGGAAAC 58.208 36.000 0.00 0.00 0.00 2.78
3211 5663 6.910972 GCTTAAAAACACACACTAGGAAACTC 59.089 38.462 0.00 0.00 43.67 3.01
3212 5664 7.201705 GCTTAAAAACACACACTAGGAAACTCT 60.202 37.037 0.00 0.00 43.67 3.24
3213 5665 6.679327 AAAAACACACACTAGGAAACTCTC 57.321 37.500 0.00 0.00 43.67 3.20
3214 5666 4.338379 AACACACACTAGGAAACTCTCC 57.662 45.455 0.00 0.00 45.81 3.71
3222 5674 3.641017 GGAAACTCTCCTGCTGCTT 57.359 52.632 0.00 0.00 41.61 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.694628 TGCATCCTGATTTATTGGCACC 59.305 45.455 0.00 0.00 0.00 5.01
182 183 0.394899 GTTGATCAAGAGCCCCCTGG 60.395 60.000 8.80 0.00 0.00 4.45
185 186 1.452108 CGGTTGATCAAGAGCCCCC 60.452 63.158 8.80 4.40 0.00 5.40
190 191 3.068732 TGCTATCTCCGGTTGATCAAGAG 59.931 47.826 8.80 12.16 0.00 2.85
191 192 3.031013 TGCTATCTCCGGTTGATCAAGA 58.969 45.455 8.80 2.07 0.00 3.02
192 193 3.459232 TGCTATCTCCGGTTGATCAAG 57.541 47.619 8.80 9.62 0.00 3.02
193 194 3.552890 CGATGCTATCTCCGGTTGATCAA 60.553 47.826 3.38 3.38 0.00 2.57
411 439 2.363018 TGAGCGGAGAGGAGTGGG 60.363 66.667 0.00 0.00 0.00 4.61
419 447 3.473647 CCATGGCCTGAGCGGAGA 61.474 66.667 3.32 0.00 41.24 3.71
905 951 3.780173 GGAAGAGGCGCTGGAGCT 61.780 66.667 7.64 0.00 39.32 4.09
1032 1123 0.037419 TGCAAGCGAGCATGTAGTCA 60.037 50.000 1.83 0.00 40.11 3.41
1058 1157 0.800300 GAACGCGAGCTTCTCCAGAG 60.800 60.000 15.93 0.00 0.00 3.35
1223 1322 5.204292 TCATCATAGTACTCTCAGCACCTT 58.796 41.667 0.00 0.00 0.00 3.50
1341 1452 4.158579 GGAATCATGGAAACTTGGGAAGTC 59.841 45.833 0.00 0.00 41.91 3.01
1378 1667 5.808366 TTGCCTCTCTATACACATTAGGG 57.192 43.478 0.00 0.00 0.00 3.53
1380 1669 9.853555 CTCTATTTGCCTCTCTATACACATTAG 57.146 37.037 0.00 0.00 0.00 1.73
1614 1924 1.270465 GGCTGAATAAATGCATGGGGC 60.270 52.381 0.00 0.00 45.13 5.80
1624 1944 4.379339 GCCAAATAACCGGCTGAATAAA 57.621 40.909 0.00 0.00 45.29 1.40
1633 1953 2.616842 GGTATGAGTGCCAAATAACCGG 59.383 50.000 0.00 0.00 0.00 5.28
1748 2562 2.890945 AGTGCCAAATAACCACTTCCAC 59.109 45.455 0.00 0.00 36.48 4.02
1988 4425 2.266554 GCTCTCGTGGAGATGAACTTG 58.733 52.381 11.15 0.00 44.45 3.16
2111 4548 1.294041 TACAATCACAGCCCCATGGA 58.706 50.000 15.22 0.00 0.00 3.41
2118 4555 4.036027 CACCATCATCTTACAATCACAGCC 59.964 45.833 0.00 0.00 0.00 4.85
2155 4592 4.448720 TGGATGCTCCATTCATTCTGAT 57.551 40.909 1.25 0.00 42.67 2.90
2211 4648 1.686052 GCCACAAACTCACCAATGGAA 59.314 47.619 6.16 0.00 0.00 3.53
2212 4649 1.133513 AGCCACAAACTCACCAATGGA 60.134 47.619 6.16 0.00 0.00 3.41
2214 4651 1.000060 CCAGCCACAAACTCACCAATG 60.000 52.381 0.00 0.00 0.00 2.82
2216 4653 1.391157 GCCAGCCACAAACTCACCAA 61.391 55.000 0.00 0.00 0.00 3.67
2389 4840 0.614812 TGAAGCATAGCACAGCCAGA 59.385 50.000 0.00 0.00 0.00 3.86
2513 4965 7.907214 CCTAATAAATAGGCTGCTACGAAAT 57.093 36.000 0.00 0.00 44.72 2.17
2546 4998 3.057526 CCAACAAAGTTAGCTGGCTTACC 60.058 47.826 7.91 0.00 0.00 2.85
2547 4999 3.818773 TCCAACAAAGTTAGCTGGCTTAC 59.181 43.478 0.00 1.78 0.00 2.34
2551 5003 2.819608 TGATCCAACAAAGTTAGCTGGC 59.180 45.455 0.00 0.00 0.00 4.85
2585 5037 8.915036 ACTGGAACGATAGAGTAAAGAACATAT 58.085 33.333 0.00 0.00 41.38 1.78
2586 5038 8.289939 ACTGGAACGATAGAGTAAAGAACATA 57.710 34.615 0.00 0.00 41.38 2.29
2587 5039 7.093902 TGACTGGAACGATAGAGTAAAGAACAT 60.094 37.037 0.00 0.00 41.38 2.71
2588 5040 6.208007 TGACTGGAACGATAGAGTAAAGAACA 59.792 38.462 0.00 0.00 41.38 3.18
2589 5041 6.618811 TGACTGGAACGATAGAGTAAAGAAC 58.381 40.000 0.00 0.00 41.38 3.01
2590 5042 6.625300 GCTGACTGGAACGATAGAGTAAAGAA 60.625 42.308 0.00 0.00 41.38 2.52
2591 5043 5.163642 GCTGACTGGAACGATAGAGTAAAGA 60.164 44.000 0.00 0.00 41.38 2.52
2592 5044 5.038033 GCTGACTGGAACGATAGAGTAAAG 58.962 45.833 0.00 0.00 41.38 1.85
2593 5045 4.142227 GGCTGACTGGAACGATAGAGTAAA 60.142 45.833 0.00 0.00 41.38 2.01
2594 5046 3.380637 GGCTGACTGGAACGATAGAGTAA 59.619 47.826 0.00 0.00 41.38 2.24
2602 5054 1.464734 CTCTAGGCTGACTGGAACGA 58.535 55.000 0.00 0.00 36.15 3.85
2604 5056 3.750828 GCTCTAGGCTGACTGGAAC 57.249 57.895 0.00 0.00 36.15 3.62
2621 5073 5.862924 TTAAGTGCTACTTGATCAACAGC 57.137 39.130 22.22 22.22 39.11 4.40
2640 5092 8.932791 CGTTCTTTCTACCTAAGCTTGATTTAA 58.067 33.333 9.86 0.00 0.00 1.52
2642 5094 7.159372 TCGTTCTTTCTACCTAAGCTTGATTT 58.841 34.615 9.86 0.00 0.00 2.17
2649 5101 4.504826 GCAGATCGTTCTTTCTACCTAAGC 59.495 45.833 0.00 0.00 0.00 3.09
2657 5109 3.971245 AGAAGGCAGATCGTTCTTTCT 57.029 42.857 3.97 3.97 44.80 2.52
2695 5147 7.128331 CGAAAAGTGGTCAATATGCAGATTAG 58.872 38.462 6.19 2.02 0.00 1.73
2716 5168 1.274167 AGTGTTACGATCTGGGCGAAA 59.726 47.619 0.00 0.00 0.00 3.46
2717 5169 0.892755 AGTGTTACGATCTGGGCGAA 59.107 50.000 0.00 0.00 0.00 4.70
2718 5170 0.892755 AAGTGTTACGATCTGGGCGA 59.107 50.000 0.00 0.00 0.00 5.54
2721 5173 3.594603 AGTGAAGTGTTACGATCTGGG 57.405 47.619 0.00 0.00 0.00 4.45
2723 5175 5.333513 GGTCTAGTGAAGTGTTACGATCTG 58.666 45.833 0.00 0.00 0.00 2.90
2732 5184 1.585006 CGGCGGTCTAGTGAAGTGT 59.415 57.895 0.00 0.00 0.00 3.55
2740 5192 2.813908 GTGTTGGCGGCGGTCTAG 60.814 66.667 9.78 0.00 0.00 2.43
2746 5198 4.389576 GCTCTTGTGTTGGCGGCG 62.390 66.667 0.51 0.51 0.00 6.46
2754 5206 0.987294 ACTGGCTATGGCTCTTGTGT 59.013 50.000 0.00 0.00 38.73 3.72
2756 5208 0.176680 CGACTGGCTATGGCTCTTGT 59.823 55.000 0.00 0.00 38.73 3.16
2762 5214 3.264897 CGCACGACTGGCTATGGC 61.265 66.667 0.00 0.00 37.82 4.40
2770 5222 1.621301 CTTCTTCCAGCGCACGACTG 61.621 60.000 11.47 0.00 34.82 3.51
2781 5233 3.795688 ACAATTCCAGCTCTTCTTCCA 57.204 42.857 0.00 0.00 0.00 3.53
2782 5234 5.459536 AAAACAATTCCAGCTCTTCTTCC 57.540 39.130 0.00 0.00 0.00 3.46
2783 5235 5.923114 GGAAAAACAATTCCAGCTCTTCTTC 59.077 40.000 1.30 0.00 46.70 2.87
2784 5236 5.847304 GGAAAAACAATTCCAGCTCTTCTT 58.153 37.500 1.30 0.00 46.70 2.52
2785 5237 5.459536 GGAAAAACAATTCCAGCTCTTCT 57.540 39.130 1.30 0.00 46.70 2.85
2806 5258 0.817654 GGGAAATTTCCTCGGCAAGG 59.182 55.000 31.23 0.00 46.72 3.61
2807 5259 1.474077 CTGGGAAATTTCCTCGGCAAG 59.526 52.381 31.23 17.27 46.72 4.01
2808 5260 1.544724 CTGGGAAATTTCCTCGGCAA 58.455 50.000 31.23 12.94 46.72 4.52
2809 5261 0.323360 CCTGGGAAATTTCCTCGGCA 60.323 55.000 31.23 21.07 46.72 5.69
2810 5262 0.034477 TCCTGGGAAATTTCCTCGGC 60.034 55.000 31.23 18.02 46.72 5.54
2811 5263 2.301346 CATCCTGGGAAATTTCCTCGG 58.699 52.381 31.23 28.45 46.72 4.63
2812 5264 1.678101 GCATCCTGGGAAATTTCCTCG 59.322 52.381 31.23 22.51 46.72 4.63
2813 5265 2.692041 CAGCATCCTGGGAAATTTCCTC 59.308 50.000 31.23 22.64 46.72 3.71
2814 5266 2.043526 ACAGCATCCTGGGAAATTTCCT 59.956 45.455 31.23 12.88 46.72 3.36
2815 5267 2.460669 ACAGCATCCTGGGAAATTTCC 58.539 47.619 26.41 26.41 46.82 3.13
2816 5268 5.595952 AGAATACAGCATCCTGGGAAATTTC 59.404 40.000 9.83 9.83 43.53 2.17
2817 5269 5.522641 AGAATACAGCATCCTGGGAAATTT 58.477 37.500 0.00 0.00 43.53 1.82
2818 5270 5.134725 AGAATACAGCATCCTGGGAAATT 57.865 39.130 0.00 0.00 43.53 1.82
2819 5271 4.803329 AGAATACAGCATCCTGGGAAAT 57.197 40.909 0.00 0.00 43.53 2.17
2820 5272 4.591321 AAGAATACAGCATCCTGGGAAA 57.409 40.909 0.00 0.00 43.53 3.13
2821 5273 4.018506 TGAAAGAATACAGCATCCTGGGAA 60.019 41.667 0.00 0.00 43.53 3.97
2822 5274 3.523157 TGAAAGAATACAGCATCCTGGGA 59.477 43.478 0.00 0.00 43.53 4.37
2823 5275 3.629398 GTGAAAGAATACAGCATCCTGGG 59.371 47.826 0.00 0.00 43.53 4.45
2824 5276 3.310774 CGTGAAAGAATACAGCATCCTGG 59.689 47.826 0.00 0.00 43.53 4.45
2825 5277 3.935203 ACGTGAAAGAATACAGCATCCTG 59.065 43.478 0.00 0.00 44.80 3.86
2826 5278 4.207891 ACGTGAAAGAATACAGCATCCT 57.792 40.909 0.00 0.00 0.00 3.24
2827 5279 4.946784 AACGTGAAAGAATACAGCATCC 57.053 40.909 0.00 0.00 0.00 3.51
2828 5280 6.855914 TCAAAAACGTGAAAGAATACAGCATC 59.144 34.615 0.00 0.00 0.00 3.91
2829 5281 6.734137 TCAAAAACGTGAAAGAATACAGCAT 58.266 32.000 0.00 0.00 0.00 3.79
2830 5282 6.037720 TCTCAAAAACGTGAAAGAATACAGCA 59.962 34.615 0.00 0.00 0.00 4.41
2831 5283 6.427150 TCTCAAAAACGTGAAAGAATACAGC 58.573 36.000 0.00 0.00 0.00 4.40
2832 5284 8.895845 CATTCTCAAAAACGTGAAAGAATACAG 58.104 33.333 9.95 0.00 0.00 2.74
2833 5285 7.860373 CCATTCTCAAAAACGTGAAAGAATACA 59.140 33.333 9.95 0.00 0.00 2.29
2834 5286 8.073768 TCCATTCTCAAAAACGTGAAAGAATAC 58.926 33.333 9.95 0.00 0.00 1.89
2835 5287 8.160521 TCCATTCTCAAAAACGTGAAAGAATA 57.839 30.769 9.95 0.00 0.00 1.75
2836 5288 7.038154 TCCATTCTCAAAAACGTGAAAGAAT 57.962 32.000 0.00 0.00 0.00 2.40
2837 5289 6.443934 TCCATTCTCAAAAACGTGAAAGAA 57.556 33.333 0.00 0.00 0.00 2.52
2838 5290 6.317642 TCTTCCATTCTCAAAAACGTGAAAGA 59.682 34.615 0.00 0.00 0.00 2.52
2839 5291 6.494842 TCTTCCATTCTCAAAAACGTGAAAG 58.505 36.000 0.00 0.00 0.00 2.62
2840 5292 6.443934 TCTTCCATTCTCAAAAACGTGAAA 57.556 33.333 0.00 0.00 0.00 2.69
2841 5293 6.317642 TCTTCTTCCATTCTCAAAAACGTGAA 59.682 34.615 0.00 0.00 0.00 3.18
2842 5294 5.820423 TCTTCTTCCATTCTCAAAAACGTGA 59.180 36.000 0.00 0.00 0.00 4.35
2843 5295 6.060028 TCTTCTTCCATTCTCAAAAACGTG 57.940 37.500 0.00 0.00 0.00 4.49
2844 5296 5.278022 GCTCTTCTTCCATTCTCAAAAACGT 60.278 40.000 0.00 0.00 0.00 3.99
2845 5297 5.049129 AGCTCTTCTTCCATTCTCAAAAACG 60.049 40.000 0.00 0.00 0.00 3.60
2846 5298 6.324561 AGCTCTTCTTCCATTCTCAAAAAC 57.675 37.500 0.00 0.00 0.00 2.43
2847 5299 7.453393 TCTAGCTCTTCTTCCATTCTCAAAAA 58.547 34.615 0.00 0.00 0.00 1.94
2848 5300 7.009179 TCTAGCTCTTCTTCCATTCTCAAAA 57.991 36.000 0.00 0.00 0.00 2.44
2849 5301 6.611613 TCTAGCTCTTCTTCCATTCTCAAA 57.388 37.500 0.00 0.00 0.00 2.69
2850 5302 6.402222 GTTCTAGCTCTTCTTCCATTCTCAA 58.598 40.000 0.00 0.00 0.00 3.02
2851 5303 5.105146 GGTTCTAGCTCTTCTTCCATTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
2852 5304 5.356426 GGTTCTAGCTCTTCTTCCATTCTC 58.644 45.833 0.00 0.00 0.00 2.87
2853 5305 4.142049 CGGTTCTAGCTCTTCTTCCATTCT 60.142 45.833 0.00 0.00 0.00 2.40
2854 5306 4.116238 CGGTTCTAGCTCTTCTTCCATTC 58.884 47.826 0.00 0.00 0.00 2.67
2855 5307 3.515901 ACGGTTCTAGCTCTTCTTCCATT 59.484 43.478 0.00 0.00 0.00 3.16
2856 5308 3.100671 ACGGTTCTAGCTCTTCTTCCAT 58.899 45.455 0.00 0.00 0.00 3.41
2857 5309 2.526432 ACGGTTCTAGCTCTTCTTCCA 58.474 47.619 0.00 0.00 0.00 3.53
2858 5310 4.922471 ATACGGTTCTAGCTCTTCTTCC 57.078 45.455 0.00 0.00 0.00 3.46
2859 5311 5.454520 GCTATACGGTTCTAGCTCTTCTTC 58.545 45.833 12.53 0.00 37.85 2.87
2860 5312 4.278919 GGCTATACGGTTCTAGCTCTTCTT 59.721 45.833 16.87 0.00 40.17 2.52
2861 5313 3.822167 GGCTATACGGTTCTAGCTCTTCT 59.178 47.826 16.87 0.00 40.17 2.85
2862 5314 3.365164 CGGCTATACGGTTCTAGCTCTTC 60.365 52.174 16.87 5.13 40.17 2.87
2863 5315 2.553172 CGGCTATACGGTTCTAGCTCTT 59.447 50.000 16.87 0.00 40.17 2.85
2864 5316 2.152830 CGGCTATACGGTTCTAGCTCT 58.847 52.381 16.87 0.00 40.17 4.09
2865 5317 1.878734 ACGGCTATACGGTTCTAGCTC 59.121 52.381 16.87 9.69 40.17 4.09
2866 5318 1.978454 ACGGCTATACGGTTCTAGCT 58.022 50.000 16.87 0.00 40.17 3.32
2867 5319 3.003689 TGTTACGGCTATACGGTTCTAGC 59.996 47.826 11.76 11.76 39.69 3.42
2868 5320 4.274459 AGTGTTACGGCTATACGGTTCTAG 59.726 45.833 0.00 0.00 38.39 2.43
2869 5321 4.199310 AGTGTTACGGCTATACGGTTCTA 58.801 43.478 0.00 0.00 38.39 2.10
2870 5322 3.019564 AGTGTTACGGCTATACGGTTCT 58.980 45.455 0.00 0.00 38.39 3.01
2871 5323 3.427161 AGTGTTACGGCTATACGGTTC 57.573 47.619 0.00 0.00 38.39 3.62
2872 5324 3.874392 AAGTGTTACGGCTATACGGTT 57.126 42.857 0.00 0.00 38.39 4.44
2873 5325 4.399303 AGTTAAGTGTTACGGCTATACGGT 59.601 41.667 0.00 0.00 38.39 4.83
2874 5326 4.925068 AGTTAAGTGTTACGGCTATACGG 58.075 43.478 0.00 0.00 38.39 4.02
2875 5327 7.969387 TTTAGTTAAGTGTTACGGCTATACG 57.031 36.000 0.00 0.00 40.31 3.06
2877 5329 8.819974 GCAATTTAGTTAAGTGTTACGGCTATA 58.180 33.333 0.00 0.00 34.41 1.31
2878 5330 7.201670 GGCAATTTAGTTAAGTGTTACGGCTAT 60.202 37.037 0.00 0.00 34.41 2.97
2879 5331 6.092533 GGCAATTTAGTTAAGTGTTACGGCTA 59.907 38.462 0.00 0.00 34.41 3.93
2880 5332 5.106436 GGCAATTTAGTTAAGTGTTACGGCT 60.106 40.000 0.00 0.00 34.41 5.52
2881 5333 5.090757 GGCAATTTAGTTAAGTGTTACGGC 58.909 41.667 0.00 0.00 34.41 5.68
2882 5334 6.402875 GGAGGCAATTTAGTTAAGTGTTACGG 60.403 42.308 0.00 0.00 34.41 4.02
2883 5335 6.370718 AGGAGGCAATTTAGTTAAGTGTTACG 59.629 38.462 0.00 0.00 34.41 3.18
2884 5336 7.683437 AGGAGGCAATTTAGTTAAGTGTTAC 57.317 36.000 0.00 0.00 34.41 2.50
2885 5337 7.308951 GCAAGGAGGCAATTTAGTTAAGTGTTA 60.309 37.037 0.00 0.00 34.41 2.41
2886 5338 6.516693 GCAAGGAGGCAATTTAGTTAAGTGTT 60.517 38.462 0.00 0.00 34.41 3.32
2887 5339 5.048013 GCAAGGAGGCAATTTAGTTAAGTGT 60.048 40.000 0.00 0.00 34.41 3.55
2888 5340 5.183904 AGCAAGGAGGCAATTTAGTTAAGTG 59.816 40.000 0.00 0.00 35.01 3.16
2889 5341 5.183904 CAGCAAGGAGGCAATTTAGTTAAGT 59.816 40.000 0.00 0.00 35.83 2.24
2890 5342 5.415701 TCAGCAAGGAGGCAATTTAGTTAAG 59.584 40.000 0.00 0.00 35.83 1.85
2891 5343 5.321102 TCAGCAAGGAGGCAATTTAGTTAA 58.679 37.500 0.00 0.00 35.83 2.01
2892 5344 4.917385 TCAGCAAGGAGGCAATTTAGTTA 58.083 39.130 0.00 0.00 35.83 2.24
2893 5345 3.760684 CTCAGCAAGGAGGCAATTTAGTT 59.239 43.478 0.00 0.00 35.83 2.24
2894 5346 3.350833 CTCAGCAAGGAGGCAATTTAGT 58.649 45.455 0.00 0.00 35.83 2.24
2907 5359 4.771590 TTTTTACAGCATCCTCAGCAAG 57.228 40.909 0.00 0.00 0.00 4.01
2908 5360 6.832520 TTATTTTTACAGCATCCTCAGCAA 57.167 33.333 0.00 0.00 0.00 3.91
2909 5361 7.408756 AATTATTTTTACAGCATCCTCAGCA 57.591 32.000 0.00 0.00 0.00 4.41
2910 5362 6.920210 GGAATTATTTTTACAGCATCCTCAGC 59.080 38.462 0.00 0.00 0.00 4.26
2911 5363 7.917505 GTGGAATTATTTTTACAGCATCCTCAG 59.082 37.037 0.00 0.00 0.00 3.35
2912 5364 7.415095 CGTGGAATTATTTTTACAGCATCCTCA 60.415 37.037 0.00 0.00 0.00 3.86
2913 5365 6.912591 CGTGGAATTATTTTTACAGCATCCTC 59.087 38.462 0.00 0.00 0.00 3.71
2914 5366 6.183360 CCGTGGAATTATTTTTACAGCATCCT 60.183 38.462 0.00 0.00 0.00 3.24
2915 5367 5.977129 CCGTGGAATTATTTTTACAGCATCC 59.023 40.000 0.00 0.00 0.00 3.51
2916 5368 6.560711 ACCGTGGAATTATTTTTACAGCATC 58.439 36.000 0.00 0.00 0.00 3.91
2917 5369 6.524101 ACCGTGGAATTATTTTTACAGCAT 57.476 33.333 0.00 0.00 0.00 3.79
2918 5370 5.968528 ACCGTGGAATTATTTTTACAGCA 57.031 34.783 0.00 0.00 0.00 4.41
2919 5371 7.382759 TCAAAACCGTGGAATTATTTTTACAGC 59.617 33.333 0.00 0.00 0.00 4.40
2920 5372 8.804688 TCAAAACCGTGGAATTATTTTTACAG 57.195 30.769 0.00 0.00 0.00 2.74
2921 5373 8.630917 TCTCAAAACCGTGGAATTATTTTTACA 58.369 29.630 0.00 0.00 0.00 2.41
2922 5374 9.465985 TTCTCAAAACCGTGGAATTATTTTTAC 57.534 29.630 0.00 0.00 0.00 2.01
2924 5376 8.987890 CATTCTCAAAACCGTGGAATTATTTTT 58.012 29.630 0.00 0.00 0.00 1.94
2925 5377 7.602265 CCATTCTCAAAACCGTGGAATTATTTT 59.398 33.333 0.00 0.00 0.00 1.82
2926 5378 7.039363 TCCATTCTCAAAACCGTGGAATTATTT 60.039 33.333 0.00 0.00 33.15 1.40
2927 5379 6.435904 TCCATTCTCAAAACCGTGGAATTATT 59.564 34.615 0.00 0.00 33.15 1.40
2928 5380 5.949354 TCCATTCTCAAAACCGTGGAATTAT 59.051 36.000 0.00 0.00 33.15 1.28
2929 5381 5.317808 TCCATTCTCAAAACCGTGGAATTA 58.682 37.500 0.00 0.00 33.15 1.40
2930 5382 4.148838 TCCATTCTCAAAACCGTGGAATT 58.851 39.130 0.00 0.00 33.15 2.17
2931 5383 3.761897 TCCATTCTCAAAACCGTGGAAT 58.238 40.909 0.00 0.00 33.15 3.01
2932 5384 3.216187 TCCATTCTCAAAACCGTGGAA 57.784 42.857 0.00 0.00 33.15 3.53
2933 5385 2.940994 TCCATTCTCAAAACCGTGGA 57.059 45.000 0.00 0.00 33.63 4.02
2934 5386 3.146066 TCTTCCATTCTCAAAACCGTGG 58.854 45.455 0.00 0.00 0.00 4.94
2935 5387 4.036262 TGTTCTTCCATTCTCAAAACCGTG 59.964 41.667 0.00 0.00 0.00 4.94
2936 5388 4.204012 TGTTCTTCCATTCTCAAAACCGT 58.796 39.130 0.00 0.00 0.00 4.83
2937 5389 4.320494 CCTGTTCTTCCATTCTCAAAACCG 60.320 45.833 0.00 0.00 0.00 4.44
2938 5390 4.559502 GCCTGTTCTTCCATTCTCAAAACC 60.560 45.833 0.00 0.00 0.00 3.27
2939 5391 4.550422 GCCTGTTCTTCCATTCTCAAAAC 58.450 43.478 0.00 0.00 0.00 2.43
2940 5392 3.573967 GGCCTGTTCTTCCATTCTCAAAA 59.426 43.478 0.00 0.00 0.00 2.44
2941 5393 3.157087 GGCCTGTTCTTCCATTCTCAAA 58.843 45.455 0.00 0.00 0.00 2.69
2942 5394 2.555227 GGGCCTGTTCTTCCATTCTCAA 60.555 50.000 0.84 0.00 0.00 3.02
2943 5395 1.004745 GGGCCTGTTCTTCCATTCTCA 59.995 52.381 0.84 0.00 0.00 3.27
2944 5396 1.004745 TGGGCCTGTTCTTCCATTCTC 59.995 52.381 4.53 0.00 0.00 2.87
2945 5397 1.075601 TGGGCCTGTTCTTCCATTCT 58.924 50.000 4.53 0.00 0.00 2.40
2946 5398 1.821136 CTTGGGCCTGTTCTTCCATTC 59.179 52.381 4.53 0.00 0.00 2.67
2947 5399 1.550869 CCTTGGGCCTGTTCTTCCATT 60.551 52.381 4.53 0.00 0.00 3.16
2948 5400 0.040204 CCTTGGGCCTGTTCTTCCAT 59.960 55.000 4.53 0.00 0.00 3.41
2949 5401 1.460255 CCTTGGGCCTGTTCTTCCA 59.540 57.895 4.53 0.00 0.00 3.53
2950 5402 1.979155 GCCTTGGGCCTGTTCTTCC 60.979 63.158 4.53 0.00 44.06 3.46
2951 5403 3.686760 GCCTTGGGCCTGTTCTTC 58.313 61.111 4.53 0.00 44.06 2.87
2961 5413 0.974010 ATGCCAACATCTGCCTTGGG 60.974 55.000 0.00 0.00 37.91 4.12
2962 5414 0.174845 CATGCCAACATCTGCCTTGG 59.825 55.000 0.00 0.00 40.11 3.61
2963 5415 0.174845 CCATGCCAACATCTGCCTTG 59.825 55.000 0.00 0.00 32.87 3.61
2964 5416 0.251922 ACCATGCCAACATCTGCCTT 60.252 50.000 0.00 0.00 32.87 4.35
2965 5417 0.968901 CACCATGCCAACATCTGCCT 60.969 55.000 0.00 0.00 32.87 4.75
2966 5418 0.966875 TCACCATGCCAACATCTGCC 60.967 55.000 0.00 0.00 32.87 4.85
2967 5419 1.066605 GATCACCATGCCAACATCTGC 59.933 52.381 0.00 0.00 32.87 4.26
2968 5420 1.679680 GGATCACCATGCCAACATCTG 59.320 52.381 0.00 0.00 32.87 2.90
2969 5421 1.567649 AGGATCACCATGCCAACATCT 59.432 47.619 0.00 0.00 38.94 2.90
2970 5422 1.952296 GAGGATCACCATGCCAACATC 59.048 52.381 0.00 0.00 38.94 3.06
2971 5423 1.748244 CGAGGATCACCATGCCAACAT 60.748 52.381 0.00 0.00 38.94 2.71
2972 5424 0.392863 CGAGGATCACCATGCCAACA 60.393 55.000 0.00 0.00 38.94 3.33
2973 5425 0.107703 TCGAGGATCACCATGCCAAC 60.108 55.000 0.00 0.00 38.94 3.77
2974 5426 0.617935 TTCGAGGATCACCATGCCAA 59.382 50.000 0.00 0.00 38.94 4.52
2975 5427 0.178767 CTTCGAGGATCACCATGCCA 59.821 55.000 0.00 0.00 38.94 4.92
2976 5428 1.162800 GCTTCGAGGATCACCATGCC 61.163 60.000 0.00 0.00 38.94 4.40
2977 5429 0.462581 TGCTTCGAGGATCACCATGC 60.463 55.000 0.00 0.00 38.94 4.06
2978 5430 2.028420 TTGCTTCGAGGATCACCATG 57.972 50.000 0.00 0.00 38.94 3.66
2979 5431 2.636830 CTTTGCTTCGAGGATCACCAT 58.363 47.619 0.00 0.00 38.94 3.55
2980 5432 1.339055 CCTTTGCTTCGAGGATCACCA 60.339 52.381 0.00 0.00 38.94 4.17
2981 5433 1.373570 CCTTTGCTTCGAGGATCACC 58.626 55.000 0.00 0.00 34.91 4.02
2982 5434 0.729690 GCCTTTGCTTCGAGGATCAC 59.270 55.000 0.00 0.00 34.91 3.06
2983 5435 0.740868 CGCCTTTGCTTCGAGGATCA 60.741 55.000 0.00 0.00 34.91 2.92
2984 5436 0.741221 ACGCCTTTGCTTCGAGGATC 60.741 55.000 0.00 0.00 34.91 3.36
2985 5437 0.741221 GACGCCTTTGCTTCGAGGAT 60.741 55.000 0.00 0.00 34.91 3.24
2986 5438 1.374252 GACGCCTTTGCTTCGAGGA 60.374 57.895 0.00 0.00 34.91 3.71
2987 5439 0.108804 TAGACGCCTTTGCTTCGAGG 60.109 55.000 0.00 0.00 40.48 4.63
2988 5440 1.855360 GATAGACGCCTTTGCTTCGAG 59.145 52.381 0.00 0.00 40.48 4.04
2989 5441 1.203758 TGATAGACGCCTTTGCTTCGA 59.796 47.619 0.00 0.00 40.48 3.71
2990 5442 1.640428 TGATAGACGCCTTTGCTTCG 58.360 50.000 0.00 0.00 40.48 3.79
2991 5443 4.419522 TTTTGATAGACGCCTTTGCTTC 57.580 40.909 0.00 0.00 36.07 3.86
2992 5444 4.546570 GTTTTTGATAGACGCCTTTGCTT 58.453 39.130 0.00 0.00 34.43 3.91
2993 5445 3.057526 GGTTTTTGATAGACGCCTTTGCT 60.058 43.478 0.00 0.00 34.43 3.91
2994 5446 3.057526 AGGTTTTTGATAGACGCCTTTGC 60.058 43.478 0.00 0.00 0.00 3.68
2995 5447 4.379499 GGAGGTTTTTGATAGACGCCTTTG 60.379 45.833 0.00 0.00 0.00 2.77
2996 5448 3.756963 GGAGGTTTTTGATAGACGCCTTT 59.243 43.478 0.00 0.00 0.00 3.11
2997 5449 3.244770 TGGAGGTTTTTGATAGACGCCTT 60.245 43.478 0.00 0.00 0.00 4.35
2998 5450 2.304761 TGGAGGTTTTTGATAGACGCCT 59.695 45.455 0.00 0.00 0.00 5.52
2999 5451 2.706890 TGGAGGTTTTTGATAGACGCC 58.293 47.619 0.00 0.00 0.00 5.68
3000 5452 4.192317 AGATGGAGGTTTTTGATAGACGC 58.808 43.478 0.00 0.00 0.00 5.19
3001 5453 8.338259 CAATTAGATGGAGGTTTTTGATAGACG 58.662 37.037 0.00 0.00 0.00 4.18
3002 5454 8.624776 CCAATTAGATGGAGGTTTTTGATAGAC 58.375 37.037 0.00 0.00 43.54 2.59
3003 5455 7.285401 GCCAATTAGATGGAGGTTTTTGATAGA 59.715 37.037 0.00 0.00 43.54 1.98
3004 5456 7.286316 AGCCAATTAGATGGAGGTTTTTGATAG 59.714 37.037 0.00 0.00 43.54 2.08
3005 5457 7.125391 AGCCAATTAGATGGAGGTTTTTGATA 58.875 34.615 0.00 0.00 43.54 2.15
3006 5458 5.960202 AGCCAATTAGATGGAGGTTTTTGAT 59.040 36.000 0.00 0.00 43.54 2.57
3007 5459 5.332743 AGCCAATTAGATGGAGGTTTTTGA 58.667 37.500 0.00 0.00 43.54 2.69
3008 5460 5.665916 AGCCAATTAGATGGAGGTTTTTG 57.334 39.130 0.00 0.00 43.54 2.44
3009 5461 6.252995 TGTAGCCAATTAGATGGAGGTTTTT 58.747 36.000 0.00 0.00 43.54 1.94
3010 5462 5.826643 TGTAGCCAATTAGATGGAGGTTTT 58.173 37.500 0.00 0.00 43.54 2.43
3011 5463 5.450818 TGTAGCCAATTAGATGGAGGTTT 57.549 39.130 0.00 0.00 43.54 3.27
3012 5464 5.440610 CTTGTAGCCAATTAGATGGAGGTT 58.559 41.667 0.00 0.00 43.54 3.50
3013 5465 4.141390 CCTTGTAGCCAATTAGATGGAGGT 60.141 45.833 0.00 0.00 43.54 3.85
3014 5466 4.392940 CCTTGTAGCCAATTAGATGGAGG 58.607 47.826 0.00 0.00 43.54 4.30
3015 5467 3.817647 GCCTTGTAGCCAATTAGATGGAG 59.182 47.826 0.00 0.00 43.54 3.86
3016 5468 3.201930 TGCCTTGTAGCCAATTAGATGGA 59.798 43.478 0.00 0.00 43.54 3.41
3017 5469 3.554934 TGCCTTGTAGCCAATTAGATGG 58.445 45.455 0.00 0.00 43.70 3.51
3018 5470 4.641989 ACTTGCCTTGTAGCCAATTAGATG 59.358 41.667 0.00 0.00 0.00 2.90
3019 5471 4.860022 ACTTGCCTTGTAGCCAATTAGAT 58.140 39.130 0.00 0.00 0.00 1.98
3020 5472 4.301072 ACTTGCCTTGTAGCCAATTAGA 57.699 40.909 0.00 0.00 0.00 2.10
3021 5473 4.737054 CAACTTGCCTTGTAGCCAATTAG 58.263 43.478 0.00 0.00 0.00 1.73
3022 5474 3.056891 GCAACTTGCCTTGTAGCCAATTA 60.057 43.478 1.95 0.00 37.42 1.40
3023 5475 2.289010 GCAACTTGCCTTGTAGCCAATT 60.289 45.455 1.95 0.00 37.42 2.32
3024 5476 1.273327 GCAACTTGCCTTGTAGCCAAT 59.727 47.619 1.95 0.00 37.42 3.16
3025 5477 0.673437 GCAACTTGCCTTGTAGCCAA 59.327 50.000 1.95 0.00 37.42 4.52
3026 5478 1.514678 CGCAACTTGCCTTGTAGCCA 61.515 55.000 8.20 0.00 41.12 4.75
3027 5479 1.210155 CGCAACTTGCCTTGTAGCC 59.790 57.895 8.20 0.00 41.12 3.93
3028 5480 1.136057 GTACGCAACTTGCCTTGTAGC 60.136 52.381 8.20 0.00 41.12 3.58
3029 5481 2.139917 TGTACGCAACTTGCCTTGTAG 58.860 47.619 8.20 0.00 41.12 2.74
3030 5482 2.139917 CTGTACGCAACTTGCCTTGTA 58.860 47.619 8.20 2.49 41.12 2.41
3031 5483 0.944386 CTGTACGCAACTTGCCTTGT 59.056 50.000 8.20 3.42 41.12 3.16
3032 5484 1.195448 CTCTGTACGCAACTTGCCTTG 59.805 52.381 8.20 0.00 41.12 3.61
3033 5485 1.512926 CTCTGTACGCAACTTGCCTT 58.487 50.000 8.20 0.00 41.12 4.35
3034 5486 0.951040 GCTCTGTACGCAACTTGCCT 60.951 55.000 8.20 0.00 41.12 4.75
3035 5487 1.227999 TGCTCTGTACGCAACTTGCC 61.228 55.000 8.20 0.00 41.12 4.52
3036 5488 0.586319 TTGCTCTGTACGCAACTTGC 59.414 50.000 3.44 3.44 41.97 4.01
3041 5493 2.833794 AGAAAGTTGCTCTGTACGCAA 58.166 42.857 2.94 2.94 44.36 4.85
3042 5494 2.526304 AGAAAGTTGCTCTGTACGCA 57.474 45.000 0.00 0.00 35.22 5.24
3043 5495 3.247648 TCAAAGAAAGTTGCTCTGTACGC 59.752 43.478 0.00 0.00 0.00 4.42
3044 5496 5.597813 ATCAAAGAAAGTTGCTCTGTACG 57.402 39.130 0.00 0.00 0.00 3.67
3045 5497 9.170584 GTTAAATCAAAGAAAGTTGCTCTGTAC 57.829 33.333 0.00 0.00 0.00 2.90
3046 5498 8.349983 GGTTAAATCAAAGAAAGTTGCTCTGTA 58.650 33.333 0.00 0.00 0.00 2.74
3047 5499 7.203218 GGTTAAATCAAAGAAAGTTGCTCTGT 58.797 34.615 0.00 0.00 0.00 3.41
3048 5500 6.642540 GGGTTAAATCAAAGAAAGTTGCTCTG 59.357 38.462 0.00 0.00 0.00 3.35
3049 5501 6.239317 GGGGTTAAATCAAAGAAAGTTGCTCT 60.239 38.462 0.00 0.00 0.00 4.09
3050 5502 5.926542 GGGGTTAAATCAAAGAAAGTTGCTC 59.073 40.000 0.00 0.00 0.00 4.26
3051 5503 5.602561 AGGGGTTAAATCAAAGAAAGTTGCT 59.397 36.000 0.00 0.00 0.00 3.91
3052 5504 5.853936 AGGGGTTAAATCAAAGAAAGTTGC 58.146 37.500 0.00 0.00 0.00 4.17
3053 5505 8.731275 AAAAGGGGTTAAATCAAAGAAAGTTG 57.269 30.769 0.00 0.00 0.00 3.16
3129 5581 4.822026 TCTTTTGCCTCCGTTTTGAAAAA 58.178 34.783 0.00 0.00 0.00 1.94
3130 5582 4.457834 TCTTTTGCCTCCGTTTTGAAAA 57.542 36.364 0.00 0.00 0.00 2.29
3131 5583 4.664150 ATCTTTTGCCTCCGTTTTGAAA 57.336 36.364 0.00 0.00 0.00 2.69
3132 5584 4.664150 AATCTTTTGCCTCCGTTTTGAA 57.336 36.364 0.00 0.00 0.00 2.69
3133 5585 4.367450 CAAATCTTTTGCCTCCGTTTTGA 58.633 39.130 0.00 0.00 0.00 2.69
3134 5586 3.059665 GCAAATCTTTTGCCTCCGTTTTG 60.060 43.478 12.74 0.00 39.38 2.44
3135 5587 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
3136 5588 2.754472 GCAAATCTTTTGCCTCCGTTT 58.246 42.857 12.74 0.00 39.38 3.60
3137 5589 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
3144 5596 7.838771 AAAATAGATGAGGCAAATCTTTTGC 57.161 32.000 14.88 14.88 44.22 3.68
3175 5627 9.893305 GTGTGTGTTTTTAAGCTAGTGATAAAT 57.107 29.630 0.00 0.00 0.00 1.40
3176 5628 9.116067 AGTGTGTGTTTTTAAGCTAGTGATAAA 57.884 29.630 0.00 0.00 0.00 1.40
3177 5629 8.671384 AGTGTGTGTTTTTAAGCTAGTGATAA 57.329 30.769 0.00 0.00 0.00 1.75
3178 5630 9.419297 CTAGTGTGTGTTTTTAAGCTAGTGATA 57.581 33.333 0.00 0.00 0.00 2.15
3179 5631 7.387948 CCTAGTGTGTGTTTTTAAGCTAGTGAT 59.612 37.037 0.00 0.00 0.00 3.06
3180 5632 6.704493 CCTAGTGTGTGTTTTTAAGCTAGTGA 59.296 38.462 0.00 0.00 0.00 3.41
3181 5633 6.704493 TCCTAGTGTGTGTTTTTAAGCTAGTG 59.296 38.462 0.00 0.00 0.00 2.74
3182 5634 6.823497 TCCTAGTGTGTGTTTTTAAGCTAGT 58.177 36.000 0.00 0.00 0.00 2.57
3183 5635 7.724305 TTCCTAGTGTGTGTTTTTAAGCTAG 57.276 36.000 0.00 0.00 0.00 3.42
3184 5636 7.771826 AGTTTCCTAGTGTGTGTTTTTAAGCTA 59.228 33.333 0.00 0.00 0.00 3.32
3185 5637 6.602009 AGTTTCCTAGTGTGTGTTTTTAAGCT 59.398 34.615 0.00 0.00 0.00 3.74
3186 5638 6.792326 AGTTTCCTAGTGTGTGTTTTTAAGC 58.208 36.000 0.00 0.00 0.00 3.09
3187 5639 8.209917 AGAGTTTCCTAGTGTGTGTTTTTAAG 57.790 34.615 0.00 0.00 0.00 1.85
3188 5640 7.281549 GGAGAGTTTCCTAGTGTGTGTTTTTAA 59.718 37.037 0.00 0.00 43.16 1.52
3189 5641 6.764560 GGAGAGTTTCCTAGTGTGTGTTTTTA 59.235 38.462 0.00 0.00 43.16 1.52
3190 5642 5.589050 GGAGAGTTTCCTAGTGTGTGTTTTT 59.411 40.000 0.00 0.00 43.16 1.94
3191 5643 5.123936 GGAGAGTTTCCTAGTGTGTGTTTT 58.876 41.667 0.00 0.00 43.16 2.43
3192 5644 4.704965 GGAGAGTTTCCTAGTGTGTGTTT 58.295 43.478 0.00 0.00 43.16 2.83
3193 5645 4.338379 GGAGAGTTTCCTAGTGTGTGTT 57.662 45.455 0.00 0.00 43.16 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.