Multiple sequence alignment - TraesCS6D01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G271300 chr6D 100.000 3666 0 0 1 3666 380559940 380563605 0.000000e+00 6770.0
1 TraesCS6D01G271300 chr6B 93.850 3236 154 21 466 3666 567820583 567823808 0.000000e+00 4831.0
2 TraesCS6D01G271300 chr6B 76.860 1210 224 33 995 2178 567844159 567845338 1.860000e-177 632.0
3 TraesCS6D01G271300 chr6B 82.301 226 25 9 3451 3666 567852241 567852461 8.090000e-42 182.0
4 TraesCS6D01G271300 chr6B 86.486 111 8 1 3263 3366 567852110 567852220 8.320000e-22 115.0
5 TraesCS6D01G271300 chr6A 92.378 1207 69 12 974 2178 521992260 521993445 0.000000e+00 1698.0
6 TraesCS6D01G271300 chr6A 88.470 954 80 11 1 952 521989703 521990628 0.000000e+00 1125.0
7 TraesCS6D01G271300 chr6A 90.732 669 42 11 1512 2178 521995211 521995861 0.000000e+00 874.0
8 TraesCS6D01G271300 chr6A 96.188 446 15 1 3223 3666 522036179 522036624 0.000000e+00 728.0
9 TraesCS6D01G271300 chr6A 77.360 1197 221 28 995 2180 522044435 522045592 0.000000e+00 664.0
10 TraesCS6D01G271300 chr6A 94.326 423 16 4 2175 2590 522032791 522033212 3.090000e-180 641.0
11 TraesCS6D01G271300 chr6A 95.385 195 9 0 3043 3237 522034599 522034793 9.890000e-81 311.0
12 TraesCS6D01G271300 chr6A 98.684 76 1 0 3043 3118 522034317 522034392 6.390000e-28 135.0
13 TraesCS6D01G271300 chr6A 83.784 111 9 5 3263 3365 522058674 522058783 3.010000e-16 97.1
14 TraesCS6D01G271300 chr1D 75.523 478 101 13 262 736 57504695 57504231 1.710000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G271300 chr6D 380559940 380563605 3665 False 6770.000000 6770 100.000000 1 3666 1 chr6D.!!$F1 3665
1 TraesCS6D01G271300 chr6B 567820583 567823808 3225 False 4831.000000 4831 93.850000 466 3666 1 chr6B.!!$F1 3200
2 TraesCS6D01G271300 chr6B 567844159 567845338 1179 False 632.000000 632 76.860000 995 2178 1 chr6B.!!$F2 1183
3 TraesCS6D01G271300 chr6A 521989703 521995861 6158 False 1232.333333 1698 90.526667 1 2178 3 chr6A.!!$F3 2177
4 TraesCS6D01G271300 chr6A 522044435 522045592 1157 False 664.000000 664 77.360000 995 2180 1 chr6A.!!$F1 1185
5 TraesCS6D01G271300 chr6A 522032791 522036624 3833 False 453.750000 728 96.145750 2175 3666 4 chr6A.!!$F4 1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 264 0.108756 GGTAGAACTGCTCCACGACC 60.109 60.0 0.0 0.0 0.00 4.79 F
578 580 0.251341 AAAGCAGGGCTCCGAATTGT 60.251 50.0 0.0 0.0 38.25 2.71 F
2026 3685 0.888736 TTGGTGCATGGTTCGGTCAG 60.889 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 3487 0.323629 TTGGCTCCAAGTAACCGAGG 59.676 55.000 0.00 0.0 0.0 4.63 R
2135 3794 1.228552 TTGGGAAAGCACCTGAGGC 60.229 57.895 0.00 0.0 0.0 4.70 R
3523 10079 1.010797 CACAACAGCGCAGTGTCAC 60.011 57.895 11.47 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.389687 AAATGACTTGAATAGCGCACG 57.610 42.857 11.47 0.00 0.00 5.34
74 75 1.352156 CGCACGAGGGACAAAGTAGC 61.352 60.000 0.00 0.00 0.00 3.58
78 79 0.458025 CGAGGGACAAAGTAGCCGTC 60.458 60.000 0.00 0.00 34.23 4.79
79 80 0.606604 GAGGGACAAAGTAGCCGTCA 59.393 55.000 0.00 0.00 36.77 4.35
85 86 3.063588 GGACAAAGTAGCCGTCAATTAGC 59.936 47.826 0.00 0.00 0.00 3.09
121 122 2.224523 TGCCCTATTCGGATTCATCACC 60.225 50.000 0.00 0.00 33.16 4.02
144 146 3.676873 CGATGCCCCTTGATTTTTCCTTG 60.677 47.826 0.00 0.00 0.00 3.61
157 159 8.647143 TGATTTTTCCTTGAAATTGAGAACAC 57.353 30.769 0.00 0.00 31.34 3.32
179 181 0.611618 TCCTTCGCATGTTGGGCATT 60.612 50.000 0.00 0.00 35.19 3.56
180 182 0.458889 CCTTCGCATGTTGGGCATTG 60.459 55.000 0.00 0.00 35.19 2.82
181 183 0.244450 CTTCGCATGTTGGGCATTGT 59.756 50.000 0.00 0.00 35.19 2.71
190 192 5.394005 GCATGTTGGGCATTGTCAATAACTA 60.394 40.000 0.00 0.00 35.19 2.24
245 247 0.460311 GACGAATCCATGGACTCGGT 59.540 55.000 39.28 27.91 46.30 4.69
250 252 3.718815 GAATCCATGGACTCGGTAGAAC 58.281 50.000 18.99 0.00 0.00 3.01
262 264 0.108756 GGTAGAACTGCTCCACGACC 60.109 60.000 0.00 0.00 0.00 4.79
288 290 7.041848 CGAATCCATCATATGTGCTTCAAAGTA 60.042 37.037 1.90 0.00 0.00 2.24
294 296 9.069078 CATCATATGTGCTTCAAAGTAAACAAG 57.931 33.333 1.90 0.00 0.00 3.16
299 301 8.770438 ATGTGCTTCAAAGTAAACAAGAAAAA 57.230 26.923 0.00 0.00 0.00 1.94
300 302 8.013236 TGTGCTTCAAAGTAAACAAGAAAAAC 57.987 30.769 0.00 0.00 0.00 2.43
301 303 7.870445 TGTGCTTCAAAGTAAACAAGAAAAACT 59.130 29.630 0.00 0.00 0.00 2.66
302 304 8.708742 GTGCTTCAAAGTAAACAAGAAAAACTT 58.291 29.630 0.00 0.00 39.70 2.66
378 380 1.597027 GGACGATAATGTGCGGGGG 60.597 63.158 0.00 0.00 0.00 5.40
379 381 2.203153 ACGATAATGTGCGGGGGC 60.203 61.111 0.00 0.00 0.00 5.80
380 382 3.345808 CGATAATGTGCGGGGGCG 61.346 66.667 0.00 0.00 0.00 6.13
411 413 3.126528 CGGCGGTTAGACTAGGGG 58.873 66.667 0.00 0.00 0.00 4.79
424 426 2.840203 CTAGGGGTGGAAGGGAGGCA 62.840 65.000 0.00 0.00 0.00 4.75
426 428 1.696314 GGGGTGGAAGGGAGGCATA 60.696 63.158 0.00 0.00 0.00 3.14
434 436 0.548510 AAGGGAGGCATAGGCAAGTC 59.451 55.000 0.15 0.00 43.71 3.01
532 534 2.033372 TCTTGGACTACACGGACACAA 58.967 47.619 0.00 0.00 0.00 3.33
540 542 1.008538 CACGGACACAAAGCAAGGC 60.009 57.895 0.00 0.00 0.00 4.35
576 578 1.177401 GAAAAGCAGGGCTCCGAATT 58.823 50.000 0.00 0.00 38.25 2.17
578 580 0.251341 AAAGCAGGGCTCCGAATTGT 60.251 50.000 0.00 0.00 38.25 2.71
613 615 1.335132 GGGGATGTCGGAAGCCTACA 61.335 60.000 0.00 0.00 0.00 2.74
660 664 1.923395 CCCAGGTTGGCCTCCAGTA 60.923 63.158 17.31 0.00 44.97 2.74
675 679 4.384056 CTCCAGTATGCGAGAATTTGGAT 58.616 43.478 0.00 0.00 36.06 3.41
676 680 4.780815 TCCAGTATGCGAGAATTTGGATT 58.219 39.130 0.00 0.00 31.97 3.01
684 688 3.119708 GCGAGAATTTGGATTTGCAGACT 60.120 43.478 0.00 0.00 0.00 3.24
694 698 3.698040 GGATTTGCAGACTGATGGTGAAT 59.302 43.478 6.65 0.00 0.00 2.57
754 758 3.554524 CCGTGATATTTAGCGGCATTTG 58.445 45.455 1.45 0.00 37.69 2.32
783 789 3.796717 CGCGCTGAAGATGTCATTAGTAA 59.203 43.478 5.56 0.00 35.07 2.24
836 842 8.662781 TTAATTGACTCTCGAGATTTTATGGG 57.337 34.615 17.03 3.95 0.00 4.00
872 878 7.054491 AGTAAACAATTGCAAGAACATTCCT 57.946 32.000 4.94 0.00 0.00 3.36
880 886 2.948315 GCAAGAACATTCCTCTCCATCC 59.052 50.000 0.00 0.00 0.00 3.51
961 967 3.304257 CATATCTCACTTTCTCCTCGCG 58.696 50.000 0.00 0.00 0.00 5.87
1163 2779 1.863662 AACATCGTCTCACGCCTCGT 61.864 55.000 0.00 0.00 42.21 4.18
1224 2840 1.377202 GCGCCACCTCTGGAAATCA 60.377 57.895 0.00 0.00 40.55 2.57
1593 3215 1.136305 CTAATCACCATCACCGACCGT 59.864 52.381 0.00 0.00 0.00 4.83
1746 3376 4.736896 GAGGTCGCCGTGGTGGAC 62.737 72.222 0.00 2.01 42.00 4.02
1817 3447 1.208165 GGTGAAGGTGATGGGGTCCT 61.208 60.000 0.00 0.00 0.00 3.85
1965 3595 4.216257 GGAGTTGCCAACGATGCATAATAT 59.784 41.667 0.00 0.00 38.76 1.28
1968 3620 7.076842 AGTTGCCAACGATGCATAATATATC 57.923 36.000 0.00 0.00 38.76 1.63
1975 3627 9.712359 CCAACGATGCATAATATATCTTGATTG 57.288 33.333 0.00 0.00 0.00 2.67
1994 3646 9.702494 CTTGATTGTACATTCTAGAGATGCATA 57.298 33.333 18.45 0.00 0.00 3.14
2026 3685 0.888736 TTGGTGCATGGTTCGGTCAG 60.889 55.000 0.00 0.00 0.00 3.51
2204 6285 6.042093 ACACCCAGTATATATTCCACACTCAG 59.958 42.308 0.00 0.00 0.00 3.35
2392 6480 5.355596 GTCAAGAAGGTCTATGTCCATGAG 58.644 45.833 0.00 0.00 0.00 2.90
2573 6661 1.654023 GGCCGGTAAGGATGTTGTGC 61.654 60.000 1.90 0.00 45.00 4.57
2590 6678 3.406200 CTGCTGGTGCTAGGGCCT 61.406 66.667 12.58 12.58 40.48 5.19
2593 6681 0.988145 TGCTGGTGCTAGGGCCTAAT 60.988 55.000 15.43 0.00 40.48 1.73
2602 6823 2.487445 GCTAGGGCCTAATCCAAAGGAC 60.487 54.545 15.43 0.00 41.95 3.85
2605 6826 0.255033 GGCCTAATCCAAAGGACGGT 59.745 55.000 0.00 0.00 36.08 4.83
2608 6829 2.878526 GCCTAATCCAAAGGACGGTGTT 60.879 50.000 0.00 0.00 36.08 3.32
2653 6874 3.428999 CGTCTGACCTTACCGTTGATGAT 60.429 47.826 1.55 0.00 0.00 2.45
2676 7051 3.127548 CCGTTTCATTGATGAACCTGAGG 59.872 47.826 5.94 0.00 45.63 3.86
2687 7062 5.132648 TGATGAACCTGAGGTTGGCTATATT 59.867 40.000 23.60 0.00 46.95 1.28
2712 7865 2.290514 CCATGACCTGAGCTCTTTTGGA 60.291 50.000 16.19 0.00 0.00 3.53
2744 7897 0.110056 GTTCGACATGCAAGGCACTG 60.110 55.000 0.00 0.00 43.04 3.66
2759 7912 2.351726 GGCACTGTTGAGTATTTAGGCG 59.648 50.000 0.00 0.00 0.00 5.52
2770 7923 6.046593 TGAGTATTTAGGCGTCTATGTTTGG 58.953 40.000 0.00 0.00 0.00 3.28
2862 8015 7.496346 AGTCCTATGGTTCACTCAAAAGATA 57.504 36.000 0.00 0.00 0.00 1.98
2864 8017 6.539103 GTCCTATGGTTCACTCAAAAGATACC 59.461 42.308 0.00 0.00 0.00 2.73
2893 8046 9.160496 GACCTATCATTTTATCTAATGCCTCTG 57.840 37.037 0.00 0.00 35.86 3.35
3087 8240 0.895100 TGTGATTTCTGGGGTGCAGC 60.895 55.000 7.55 7.55 0.00 5.25
3123 8276 4.780815 TGTTTCTGACCTGCCCTATTATG 58.219 43.478 0.00 0.00 0.00 1.90
3201 8354 0.036732 TGTTTGAGCCAGGCTAGGTG 59.963 55.000 16.16 0.00 39.88 4.00
3435 9989 3.703556 TCCTAGCTTCTGAATCTCACAGG 59.296 47.826 0.00 0.27 36.22 4.00
3448 10002 6.932960 TGAATCTCACAGGAAGCACATATATG 59.067 38.462 11.29 11.29 0.00 1.78
3476 10030 5.243060 TGATTACTAGCGCACATAGGTACAT 59.757 40.000 11.47 0.00 0.00 2.29
3581 10137 4.399934 AGAAGAGACTTCATCGGGAGTTAC 59.600 45.833 12.86 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.798223 TCGTCGTTTTTGGATGAGCTG 59.202 47.619 0.00 0.00 0.00 4.24
15 16 2.163818 TCGTCGTTTTTGGATGAGCT 57.836 45.000 0.00 0.00 0.00 4.09
48 49 1.141019 GTCCCTCGTGCGCTATTCA 59.859 57.895 9.73 0.00 0.00 2.57
60 61 0.606604 TGACGGCTACTTTGTCCCTC 59.393 55.000 0.00 0.00 0.00 4.30
85 86 1.518056 GGGCACGTGGGCATATGATG 61.518 60.000 18.88 0.00 45.66 3.07
97 98 0.828022 TGAATCCGAATAGGGCACGT 59.172 50.000 0.00 0.00 41.52 4.49
121 122 1.136891 GGAAAAATCAAGGGGCATCGG 59.863 52.381 0.00 0.00 0.00 4.18
144 146 3.423645 CGAAGGAGCGTGTTCTCAATTTC 60.424 47.826 0.00 0.00 34.84 2.17
157 159 2.753966 CCCAACATGCGAAGGAGCG 61.754 63.158 0.00 0.00 40.67 5.03
179 181 8.463607 TGACGATGATACTTGTAGTTATTGACA 58.536 33.333 0.00 0.00 0.00 3.58
180 182 8.851960 TGACGATGATACTTGTAGTTATTGAC 57.148 34.615 0.00 0.00 0.00 3.18
190 192 6.586344 AGGATGAAATGACGATGATACTTGT 58.414 36.000 0.00 0.00 0.00 3.16
243 245 0.108756 GGTCGTGGAGCAGTTCTACC 60.109 60.000 0.00 0.00 34.02 3.18
245 247 0.607217 TCGGTCGTGGAGCAGTTCTA 60.607 55.000 0.00 0.00 0.00 2.10
250 252 1.519455 GGATTCGGTCGTGGAGCAG 60.519 63.158 0.00 0.00 0.00 4.24
262 264 5.678132 TTGAAGCACATATGATGGATTCG 57.322 39.130 10.38 0.00 32.38 3.34
366 368 4.169696 CTCCGCCCCCGCACATTA 62.170 66.667 0.00 0.00 34.03 1.90
397 399 1.755380 CTTCCACCCCTAGTCTAACCG 59.245 57.143 0.00 0.00 0.00 4.44
411 413 1.149401 GCCTATGCCTCCCTTCCAC 59.851 63.158 0.00 0.00 0.00 4.02
424 426 1.607612 CCAACCCCGACTTGCCTAT 59.392 57.895 0.00 0.00 0.00 2.57
426 428 4.660938 GCCAACCCCGACTTGCCT 62.661 66.667 0.00 0.00 0.00 4.75
483 485 1.961394 TCACTATACCATCCACTCCGC 59.039 52.381 0.00 0.00 0.00 5.54
515 517 1.539496 GCTTTGTGTCCGTGTAGTCCA 60.539 52.381 0.00 0.00 0.00 4.02
532 534 2.044946 GTCCATCCGGCCTTGCTT 60.045 61.111 0.00 0.00 0.00 3.91
540 542 1.264749 TTCTCCCTGTGTCCATCCGG 61.265 60.000 0.00 0.00 0.00 5.14
549 551 1.246737 GCCCTGCTTTTCTCCCTGTG 61.247 60.000 0.00 0.00 0.00 3.66
550 552 1.075659 GCCCTGCTTTTCTCCCTGT 59.924 57.895 0.00 0.00 0.00 4.00
660 664 3.444742 TCTGCAAATCCAAATTCTCGCAT 59.555 39.130 0.00 0.00 0.00 4.73
675 679 3.489355 ACATTCACCATCAGTCTGCAAA 58.511 40.909 0.00 0.00 0.00 3.68
676 680 3.144657 ACATTCACCATCAGTCTGCAA 57.855 42.857 0.00 0.00 0.00 4.08
684 688 3.056678 GGTGCATCAAACATTCACCATCA 60.057 43.478 4.97 0.00 44.79 3.07
694 698 0.383590 CCAACACGGTGCATCAAACA 59.616 50.000 8.30 0.00 0.00 2.83
728 732 2.734670 CCGCTAAATATCACGGTTCGA 58.265 47.619 0.00 0.00 40.77 3.71
761 767 2.196749 ACTAATGACATCTTCAGCGCG 58.803 47.619 0.00 0.00 37.77 6.86
835 841 4.525912 TTGTTTACTCCTCCGTACTTCC 57.474 45.455 0.00 0.00 0.00 3.46
836 842 5.163884 GCAATTGTTTACTCCTCCGTACTTC 60.164 44.000 7.40 0.00 0.00 3.01
1134 2750 0.965866 AGACGATGTTGCGGAGGAGA 60.966 55.000 0.00 0.00 35.12 3.71
1593 3215 1.816537 GAGCATGTAGTCGAGGCCA 59.183 57.895 5.01 0.00 0.00 5.36
1768 3398 0.796927 GTAGGCGCTTCAAACAGGAC 59.203 55.000 7.64 0.00 0.00 3.85
1817 3447 2.957402 AGCAATCTTGACCTTCACCA 57.043 45.000 0.00 0.00 0.00 4.17
1857 3487 0.323629 TTGGCTCCAAGTAACCGAGG 59.676 55.000 0.00 0.00 0.00 4.63
1881 3511 3.129502 CCGATGTGCAGCTGGTGG 61.130 66.667 17.12 0.00 0.00 4.61
1965 3595 9.920133 GCATCTCTAGAATGTACAATCAAGATA 57.080 33.333 13.30 2.33 0.00 1.98
1968 3620 8.604640 ATGCATCTCTAGAATGTACAATCAAG 57.395 34.615 13.30 7.48 0.00 3.02
1994 3646 7.422465 ACCATGCACCAAAAGAATATACATT 57.578 32.000 0.00 0.00 0.00 2.71
1996 3648 6.404184 CGAACCATGCACCAAAAGAATATACA 60.404 38.462 0.00 0.00 0.00 2.29
1997 3649 5.971202 CGAACCATGCACCAAAAGAATATAC 59.029 40.000 0.00 0.00 0.00 1.47
2026 3685 1.866853 GCCCTTGTGTTAGGCTGCAC 61.867 60.000 14.46 14.46 43.62 4.57
2135 3794 1.228552 TTGGGAAAGCACCTGAGGC 60.229 57.895 0.00 0.00 0.00 4.70
2204 6285 4.816385 TCTGTTGAAGGATGACTGAACAAC 59.184 41.667 0.00 0.00 38.17 3.32
2392 6480 2.956964 CTCTGATCGCCGCGGAAC 60.957 66.667 33.48 16.43 0.00 3.62
2573 6661 1.626356 TTAGGCCCTAGCACCAGCAG 61.626 60.000 0.00 0.00 45.49 4.24
2590 6678 3.150767 CCAAACACCGTCCTTTGGATTA 58.849 45.455 10.16 0.00 46.52 1.75
2593 6681 3.103637 CCAAACACCGTCCTTTGGA 57.896 52.632 10.16 0.00 46.52 3.53
2602 6823 2.742372 CTCCGCCTCCAAACACCG 60.742 66.667 0.00 0.00 0.00 4.94
2605 6826 1.302511 GAAGCTCCGCCTCCAAACA 60.303 57.895 0.00 0.00 0.00 2.83
2625 6846 1.723220 GGTAAGGTCAGACGCTTTCC 58.277 55.000 8.93 9.48 0.00 3.13
2676 7051 6.321181 TCAGGTCATGGAAAAATATAGCCAAC 59.679 38.462 0.00 0.00 33.51 3.77
2687 7062 3.795688 AAGAGCTCAGGTCATGGAAAA 57.204 42.857 17.77 0.00 31.89 2.29
2712 7865 3.469008 TGTCGAACAACCAGTGATTCT 57.531 42.857 0.00 0.00 0.00 2.40
2744 7897 7.399523 CAAACATAGACGCCTAAATACTCAAC 58.600 38.462 0.00 0.00 0.00 3.18
2770 7923 5.904362 AAGATTCATGCCTTGGTTAAGAC 57.096 39.130 0.00 0.00 35.92 3.01
2862 8015 7.387948 GCATTAGATAAAATGATAGGTCACGGT 59.612 37.037 0.91 0.00 38.84 4.83
2864 8017 7.604164 AGGCATTAGATAAAATGATAGGTCACG 59.396 37.037 0.91 0.00 38.84 4.35
2893 8046 3.315191 AGGCACACATTTAGAACACACAC 59.685 43.478 0.00 0.00 0.00 3.82
2991 8144 2.695666 TCAGCCTAGCTCCATGTAAGAC 59.304 50.000 0.00 0.00 36.40 3.01
3201 8354 7.043192 TGTGTAAACTTTCACTTAAGCTACGTC 60.043 37.037 1.29 0.00 35.82 4.34
3373 9927 1.623811 ACAAGATAAGTGAGGTGCGGT 59.376 47.619 0.00 0.00 0.00 5.68
3375 9929 2.959516 TCACAAGATAAGTGAGGTGCG 58.040 47.619 0.00 0.00 40.80 5.34
3448 10002 5.154932 CCTATGTGCGCTAGTAATCAGTAC 58.845 45.833 9.73 0.00 0.00 2.73
3523 10079 1.010797 CACAACAGCGCAGTGTCAC 60.011 57.895 11.47 0.00 0.00 3.67
3529 10085 3.542712 AAGTAAATCACAACAGCGCAG 57.457 42.857 11.47 3.33 0.00 5.18
3581 10137 4.788100 GCATGCTTAATGACGTTGTAGTTG 59.212 41.667 11.37 0.00 38.72 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.