Multiple sequence alignment - TraesCS6D01G269900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G269900 chr6D 100.000 3580 0 0 1 3580 379720465 379724044 0.000000e+00 6612.0
1 TraesCS6D01G269900 chr6D 86.471 1774 185 25 613 2366 73587624 73589362 0.000000e+00 1895.0
2 TraesCS6D01G269900 chr6D 84.314 867 109 5 983 1822 65390056 65389190 0.000000e+00 822.0
3 TraesCS6D01G269900 chr6B 94.840 2403 105 12 347 2743 566538563 566536174 0.000000e+00 3733.0
4 TraesCS6D01G269900 chr6B 86.130 1788 179 34 608 2366 147961114 147962861 0.000000e+00 1864.0
5 TraesCS6D01G269900 chr6B 84.561 855 104 14 983 1814 140451435 140450586 0.000000e+00 822.0
6 TraesCS6D01G269900 chr6B 89.784 509 24 8 3091 3580 566535960 566535461 8.440000e-176 627.0
7 TraesCS6D01G269900 chr6B 81.102 381 46 12 1456 1814 140413214 140412838 7.570000e-72 281.0
8 TraesCS6D01G269900 chr6A 93.148 2160 115 22 347 2498 520873094 520870960 0.000000e+00 3138.0
9 TraesCS6D01G269900 chr6A 86.124 1780 187 28 613 2366 90032316 90034061 0.000000e+00 1864.0
10 TraesCS6D01G269900 chr6A 84.544 867 104 7 983 1822 83362151 83363014 0.000000e+00 832.0
11 TraesCS6D01G269900 chr6A 86.690 571 26 15 3060 3580 520870431 520869861 3.980000e-164 588.0
12 TraesCS6D01G269900 chr6A 85.347 505 39 21 2454 2951 520870956 520870480 1.160000e-134 490.0
13 TraesCS6D01G269900 chr3B 84.084 333 49 4 32 362 278404159 278404489 5.770000e-83 318.0
14 TraesCS6D01G269900 chr3B 87.574 169 15 4 347 510 278404580 278404747 1.310000e-44 191.0
15 TraesCS6D01G269900 chr3B 100.000 30 0 0 2 31 278404106 278404135 4.990000e-04 56.5
16 TraesCS6D01G269900 chr5B 83.939 330 49 4 35 362 141600884 141600557 2.680000e-81 313.0
17 TraesCS6D01G269900 chr5B 86.982 169 16 6 347 510 141600466 141600299 6.100000e-43 185.0
18 TraesCS6D01G269900 chr5B 86.982 169 16 4 347 510 524924825 524924992 6.100000e-43 185.0
19 TraesCS6D01G269900 chr5B 84.146 82 11 2 3443 3523 123760693 123760773 1.070000e-10 78.7
20 TraesCS6D01G269900 chr7B 83.483 333 51 4 32 362 651358825 651359155 1.250000e-79 307.0
21 TraesCS6D01G269900 chr7B 87.574 169 15 4 347 510 442800971 442801138 1.310000e-44 191.0
22 TraesCS6D01G269900 chr7B 87.574 169 15 4 347 510 651359246 651359413 1.310000e-44 191.0
23 TraesCS6D01G269900 chr7B 88.235 153 17 1 3399 3551 99130645 99130796 7.900000e-42 182.0
24 TraesCS6D01G269900 chr7B 100.000 35 0 0 2975 3009 11836957 11836923 8.300000e-07 65.8
25 TraesCS6D01G269900 chr7B 100.000 30 0 0 2 31 442800622 442800651 4.990000e-04 56.5
26 TraesCS6D01G269900 chr7B 100.000 30 0 0 2 31 651358772 651358801 4.990000e-04 56.5
27 TraesCS6D01G269900 chr7A 86.957 184 19 3 686 869 310667506 310667684 6.060000e-48 202.0
28 TraesCS6D01G269900 chr7A 97.500 40 1 0 2970 3009 75159236 75159197 6.410000e-08 69.4
29 TraesCS6D01G269900 chr7D 88.235 153 17 1 3399 3551 136253199 136253350 7.900000e-42 182.0
30 TraesCS6D01G269900 chr2A 86.957 115 13 1 990 1104 22184886 22184774 1.040000e-25 128.0
31 TraesCS6D01G269900 chr5A 84.146 82 11 2 3443 3523 118670734 118670814 1.070000e-10 78.7
32 TraesCS6D01G269900 chr5D 84.416 77 10 2 3448 3523 113391514 113391589 1.380000e-09 75.0
33 TraesCS6D01G269900 chr1B 96.970 33 1 0 1666 1698 448044415 448044383 4.990000e-04 56.5
34 TraesCS6D01G269900 chr4A 96.875 32 1 0 1666 1697 622454355 622454324 2.000000e-03 54.7
35 TraesCS6D01G269900 chr4A 96.875 32 1 0 1666 1697 622488471 622488440 2.000000e-03 54.7
36 TraesCS6D01G269900 chr4A 96.875 32 1 0 1666 1697 622522865 622522834 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G269900 chr6D 379720465 379724044 3579 False 6612.000000 6612 100.0000 1 3580 1 chr6D.!!$F2 3579
1 TraesCS6D01G269900 chr6D 73587624 73589362 1738 False 1895.000000 1895 86.4710 613 2366 1 chr6D.!!$F1 1753
2 TraesCS6D01G269900 chr6D 65389190 65390056 866 True 822.000000 822 84.3140 983 1822 1 chr6D.!!$R1 839
3 TraesCS6D01G269900 chr6B 566535461 566538563 3102 True 2180.000000 3733 92.3120 347 3580 2 chr6B.!!$R3 3233
4 TraesCS6D01G269900 chr6B 147961114 147962861 1747 False 1864.000000 1864 86.1300 608 2366 1 chr6B.!!$F1 1758
5 TraesCS6D01G269900 chr6B 140450586 140451435 849 True 822.000000 822 84.5610 983 1814 1 chr6B.!!$R2 831
6 TraesCS6D01G269900 chr6A 90032316 90034061 1745 False 1864.000000 1864 86.1240 613 2366 1 chr6A.!!$F2 1753
7 TraesCS6D01G269900 chr6A 520869861 520873094 3233 True 1405.333333 3138 88.3950 347 3580 3 chr6A.!!$R1 3233
8 TraesCS6D01G269900 chr6A 83362151 83363014 863 False 832.000000 832 84.5440 983 1822 1 chr6A.!!$F1 839
9 TraesCS6D01G269900 chr5B 141600299 141600884 585 True 249.000000 313 85.4605 35 510 2 chr5B.!!$R1 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 711 0.046397 ATACTCTGGCCCCCTTTCCT 59.954 55.000 0.00 0.0 0.00 3.36 F
1158 1281 2.044252 CTTGCCAGGCCAGCATCT 60.044 61.111 19.88 0.0 40.59 2.90 F
1908 2070 0.035343 GGCCCAAGACCACTCCTTAC 60.035 60.000 0.00 0.0 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1632 1.067749 CTCCTCATCAGCAGCCTCG 59.932 63.158 0.00 0.0 0.00 4.63 R
2142 2304 1.302033 CTTGCCACAGAACGCCTCT 60.302 57.895 0.00 0.0 33.23 3.69 R
3269 3536 0.458716 GACGCGGAAGAAGAAGAGGG 60.459 60.000 12.47 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.486211 CGATTGTCCCTAGTCCCAGT 58.514 55.000 0.00 0.00 0.00 4.00
20 21 1.831736 CGATTGTCCCTAGTCCCAGTT 59.168 52.381 0.00 0.00 0.00 3.16
21 22 3.028850 CGATTGTCCCTAGTCCCAGTTA 58.971 50.000 0.00 0.00 0.00 2.24
22 23 3.181478 CGATTGTCCCTAGTCCCAGTTAC 60.181 52.174 0.00 0.00 0.00 2.50
23 24 3.555117 TTGTCCCTAGTCCCAGTTACT 57.445 47.619 0.00 0.00 0.00 2.24
24 25 3.555117 TGTCCCTAGTCCCAGTTACTT 57.445 47.619 0.00 0.00 0.00 2.24
25 26 4.680278 TGTCCCTAGTCCCAGTTACTTA 57.320 45.455 0.00 0.00 0.00 2.24
26 27 5.216665 TGTCCCTAGTCCCAGTTACTTAT 57.783 43.478 0.00 0.00 0.00 1.73
27 28 5.596763 TGTCCCTAGTCCCAGTTACTTATT 58.403 41.667 0.00 0.00 0.00 1.40
28 29 6.027482 TGTCCCTAGTCCCAGTTACTTATTT 58.973 40.000 0.00 0.00 0.00 1.40
29 30 6.502863 TGTCCCTAGTCCCAGTTACTTATTTT 59.497 38.462 0.00 0.00 0.00 1.82
30 31 6.822170 GTCCCTAGTCCCAGTTACTTATTTTG 59.178 42.308 0.00 0.00 0.00 2.44
31 32 6.069847 TCCCTAGTCCCAGTTACTTATTTTGG 60.070 42.308 0.00 0.00 0.00 3.28
32 33 6.069847 CCCTAGTCCCAGTTACTTATTTTGGA 60.070 42.308 0.00 0.00 0.00 3.53
33 34 6.822170 CCTAGTCCCAGTTACTTATTTTGGAC 59.178 42.308 0.00 0.00 41.00 4.02
92 93 8.267183 TGATTTCTCAACCTGCTATCTTCATTA 58.733 33.333 0.00 0.00 0.00 1.90
127 129 7.645340 CCTGCAAATTGTCTATACTAATGTTGC 59.355 37.037 0.00 0.00 38.43 4.17
135 137 9.830975 TTGTCTATACTAATGTTGCATGTACAT 57.169 29.630 1.41 1.41 37.82 2.29
150 152 6.038936 TGCATGTACATTTCTTCTGATCCATG 59.961 38.462 5.37 0.00 0.00 3.66
156 158 6.962182 ACATTTCTTCTGATCCATGTCCTTA 58.038 36.000 0.00 0.00 0.00 2.69
161 163 8.553085 TTCTTCTGATCCATGTCCTTAAGATA 57.447 34.615 3.36 0.00 0.00 1.98
225 227 3.871006 TGTCATTATGCCTTGACTTAGCG 59.129 43.478 4.86 0.00 42.17 4.26
238 240 1.216122 CTTAGCGCCTGATCAAGAGC 58.784 55.000 11.66 11.66 0.00 4.09
241 251 1.226974 GCGCCTGATCAAGAGCGTA 60.227 57.895 25.87 0.00 43.37 4.42
251 261 2.901249 TCAAGAGCGTATGCCCTAAAC 58.099 47.619 2.51 0.00 44.31 2.01
252 262 2.500098 TCAAGAGCGTATGCCCTAAACT 59.500 45.455 2.51 0.00 44.31 2.66
253 263 2.604046 AGAGCGTATGCCCTAAACTG 57.396 50.000 2.51 0.00 44.31 3.16
254 264 1.831736 AGAGCGTATGCCCTAAACTGT 59.168 47.619 2.51 0.00 44.31 3.55
255 265 3.028850 AGAGCGTATGCCCTAAACTGTA 58.971 45.455 2.51 0.00 44.31 2.74
256 266 3.641906 AGAGCGTATGCCCTAAACTGTAT 59.358 43.478 2.51 0.00 44.31 2.29
257 267 3.988517 GAGCGTATGCCCTAAACTGTATC 59.011 47.826 2.51 0.00 44.31 2.24
258 268 3.386726 AGCGTATGCCCTAAACTGTATCA 59.613 43.478 2.51 0.00 44.31 2.15
259 269 3.741344 GCGTATGCCCTAAACTGTATCAG 59.259 47.826 0.00 0.00 34.40 2.90
260 270 4.500887 GCGTATGCCCTAAACTGTATCAGA 60.501 45.833 3.70 0.00 33.15 3.27
261 271 5.597806 CGTATGCCCTAAACTGTATCAGAA 58.402 41.667 3.70 0.00 35.18 3.02
262 272 5.692204 CGTATGCCCTAAACTGTATCAGAAG 59.308 44.000 3.70 0.00 35.18 2.85
263 273 5.957771 ATGCCCTAAACTGTATCAGAAGA 57.042 39.130 3.70 0.00 35.18 2.87
264 274 5.086104 TGCCCTAAACTGTATCAGAAGAC 57.914 43.478 3.70 0.00 35.18 3.01
273 283 6.366315 ACTGTATCAGAAGACGTAGACATC 57.634 41.667 3.70 0.00 35.18 3.06
309 319 3.972227 CTGAACAGGAGTTGCCCG 58.028 61.111 0.00 0.00 38.30 6.13
314 324 1.886542 GAACAGGAGTTGCCCGAAAAT 59.113 47.619 0.00 0.00 38.30 1.82
320 330 3.509967 AGGAGTTGCCCGAAAATTTTAGG 59.490 43.478 19.90 19.90 37.37 2.69
324 334 4.525100 AGTTGCCCGAAAATTTTAGGCTAA 59.475 37.500 30.20 23.00 39.30 3.09
327 337 4.201970 TGCCCGAAAATTTTAGGCTAATCG 60.202 41.667 30.20 16.39 39.30 3.34
333 343 7.201617 CCGAAAATTTTAGGCTAATCGTCTTCT 60.202 37.037 15.89 0.00 0.00 2.85
335 345 8.794335 AAAATTTTAGGCTAATCGTCTTCTCT 57.206 30.769 7.96 0.00 0.00 3.10
358 474 1.000060 CCCTTGTGAACATGCTGGTTG 60.000 52.381 0.00 0.00 0.00 3.77
362 478 3.435105 TGTGAACATGCTGGTTGTTTC 57.565 42.857 0.00 0.00 37.43 2.78
370 490 3.244033 TGCTGGTTGTTTCTTTGTTGG 57.756 42.857 0.00 0.00 0.00 3.77
372 492 3.450457 TGCTGGTTGTTTCTTTGTTGGAT 59.550 39.130 0.00 0.00 0.00 3.41
383 503 8.836413 TGTTTCTTTGTTGGATTACTTCTGTAG 58.164 33.333 0.00 0.00 0.00 2.74
384 504 7.435068 TTCTTTGTTGGATTACTTCTGTAGC 57.565 36.000 0.00 0.00 0.00 3.58
387 507 7.719633 TCTTTGTTGGATTACTTCTGTAGCTTT 59.280 33.333 0.00 0.00 0.00 3.51
405 525 5.105834 GCTTTCATGGAGCTATGACAATC 57.894 43.478 12.84 0.00 36.84 2.67
406 526 4.577693 GCTTTCATGGAGCTATGACAATCA 59.422 41.667 12.84 0.00 36.84 2.57
436 556 7.922699 AATATCTTAGCCTCTTAGGACAACT 57.077 36.000 0.00 0.00 37.67 3.16
437 557 5.862678 ATCTTAGCCTCTTAGGACAACTC 57.137 43.478 0.00 0.00 37.67 3.01
438 558 4.936802 TCTTAGCCTCTTAGGACAACTCT 58.063 43.478 0.00 0.00 37.67 3.24
484 604 7.957484 CACATGTGCTGTTTAGACTGTTTATAC 59.043 37.037 13.94 0.00 35.29 1.47
578 699 8.883954 ATGAATTGATACTGTGTGATACTCTG 57.116 34.615 0.00 0.00 0.00 3.35
580 701 4.655762 TGATACTGTGTGATACTCTGGC 57.344 45.455 0.00 0.00 0.00 4.85
590 711 0.046397 ATACTCTGGCCCCCTTTCCT 59.954 55.000 0.00 0.00 0.00 3.36
880 1003 5.480073 CCTATTAGGATCTCTGGTTCTGAGG 59.520 48.000 3.41 0.00 37.67 3.86
988 1111 6.416631 TCTGATAGTATCTGCTGCAGAAAT 57.583 37.500 33.31 23.11 44.04 2.17
1158 1281 2.044252 CTTGCCAGGCCAGCATCT 60.044 61.111 19.88 0.00 40.59 2.90
1265 1388 2.086869 TGATACTTCAAAGCTGGCTGC 58.913 47.619 8.47 8.47 43.29 5.25
1305 1428 7.097192 TCATCAAGAAGTATGTCCAGTGTTAC 58.903 38.462 0.00 0.00 0.00 2.50
1308 1431 3.830755 AGAAGTATGTCCAGTGTTACGGT 59.169 43.478 0.00 0.00 0.00 4.83
1509 1632 0.107459 AGGAGCGGATGAAAGAAGGC 60.107 55.000 0.00 0.00 0.00 4.35
1608 1752 3.650950 GCTGCTGGGGGAGGTTCA 61.651 66.667 0.00 0.00 0.00 3.18
1692 1848 3.632189 TGATGATGACGATGACGATGAC 58.368 45.455 0.00 0.00 42.66 3.06
1908 2070 0.035343 GGCCCAAGACCACTCCTTAC 60.035 60.000 0.00 0.00 0.00 2.34
2095 2257 5.820947 GTGAAGAACAAGAAGTACCTTTCCA 59.179 40.000 0.00 0.00 0.00 3.53
2343 2505 1.299468 GAGCGCCGAATCTGACGAT 60.299 57.895 2.29 0.00 0.00 3.73
2346 2508 1.543941 GCGCCGAATCTGACGATGAG 61.544 60.000 0.00 0.00 0.00 2.90
2407 2569 3.181465 ACCGAGTGTCTTTGATGAGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
2408 2570 3.430218 CCGAGTGTCTTTGATGAGTGTTC 59.570 47.826 0.00 0.00 0.00 3.18
2423 2585 7.394641 TGATGAGTGTTCTATAAGTGTCAGTCT 59.605 37.037 0.00 0.00 0.00 3.24
2433 2595 8.088981 TCTATAAGTGTCAGTCTTTGTCTTTCC 58.911 37.037 0.00 0.00 0.00 3.13
2522 2732 5.670149 ACGAACTATAGTATGTCTGGTCG 57.330 43.478 5.65 11.27 0.00 4.79
2595 2805 8.706035 ACTACGTTTGAATACATTAAGTGTGAC 58.294 33.333 0.00 0.00 42.24 3.67
2601 2811 8.785329 TTGAATACATTAAGTGTGACATGCTA 57.215 30.769 0.00 0.00 42.24 3.49
2617 2830 8.291740 GTGACATGCTATTATATGATGTTTGCA 58.708 33.333 0.00 0.00 0.00 4.08
2666 2879 4.948847 ACTCGATATTGAGTTGCATGCTA 58.051 39.130 20.33 8.83 46.85 3.49
2699 2912 7.083062 TGCTTATCCAGAAATCTCATGGTAT 57.917 36.000 0.00 0.00 35.51 2.73
2700 2913 8.206126 TGCTTATCCAGAAATCTCATGGTATA 57.794 34.615 0.00 0.00 35.51 1.47
2756 2969 2.709934 AGCTGCCTGATGTGGATCTATT 59.290 45.455 0.00 0.00 0.00 1.73
2759 2972 4.316645 CTGCCTGATGTGGATCTATTCAG 58.683 47.826 12.34 12.34 0.00 3.02
2773 2986 6.071616 GGATCTATTCAGCCTAGTCAAGTAGG 60.072 46.154 6.55 6.55 42.45 3.18
2774 2987 6.014771 TCTATTCAGCCTAGTCAAGTAGGA 57.985 41.667 13.98 0.00 42.18 2.94
2776 2989 3.741245 TCAGCCTAGTCAAGTAGGAGT 57.259 47.619 13.98 0.00 42.18 3.85
2777 2990 4.857130 TCAGCCTAGTCAAGTAGGAGTA 57.143 45.455 13.98 0.00 42.18 2.59
2779 2992 4.227754 TCAGCCTAGTCAAGTAGGAGTAGT 59.772 45.833 13.98 0.00 42.18 2.73
2782 2995 4.948621 GCCTAGTCAAGTAGGAGTAGTTGA 59.051 45.833 13.98 0.00 43.47 3.18
2783 2996 5.595133 GCCTAGTCAAGTAGGAGTAGTTGAT 59.405 44.000 13.98 0.55 45.94 2.57
2784 2997 6.460399 GCCTAGTCAAGTAGGAGTAGTTGATG 60.460 46.154 13.98 1.86 45.94 3.07
2785 2998 6.829298 CCTAGTCAAGTAGGAGTAGTTGATGA 59.171 42.308 5.11 0.00 45.94 2.92
2864 3078 8.539770 AGATTATCTTTGTACTTCTGTGTGTG 57.460 34.615 0.00 0.00 0.00 3.82
2865 3079 8.367911 AGATTATCTTTGTACTTCTGTGTGTGA 58.632 33.333 0.00 0.00 0.00 3.58
2866 3080 7.946655 TTATCTTTGTACTTCTGTGTGTGAG 57.053 36.000 0.00 0.00 0.00 3.51
2927 3141 8.432013 TGTGATTTGTGGAGATATATAGCACTT 58.568 33.333 0.07 0.00 0.00 3.16
2951 3166 0.765903 TTTTTGCCATGGCCCTTGGA 60.766 50.000 33.44 11.50 41.09 3.53
2973 3206 3.944087 ACTTCATGCTCTCCTTTGTACC 58.056 45.455 0.00 0.00 0.00 3.34
2974 3207 3.274288 CTTCATGCTCTCCTTTGTACCC 58.726 50.000 0.00 0.00 0.00 3.69
2976 3209 0.919710 ATGCTCTCCTTTGTACCCCC 59.080 55.000 0.00 0.00 0.00 5.40
2978 3211 0.542333 GCTCTCCTTTGTACCCCCTC 59.458 60.000 0.00 0.00 0.00 4.30
2979 3212 1.902141 GCTCTCCTTTGTACCCCCTCT 60.902 57.143 0.00 0.00 0.00 3.69
2980 3213 1.834263 CTCTCCTTTGTACCCCCTCTG 59.166 57.143 0.00 0.00 0.00 3.35
2981 3214 1.151413 TCTCCTTTGTACCCCCTCTGT 59.849 52.381 0.00 0.00 0.00 3.41
2982 3215 1.985895 CTCCTTTGTACCCCCTCTGTT 59.014 52.381 0.00 0.00 0.00 3.16
2983 3216 3.178865 CTCCTTTGTACCCCCTCTGTTA 58.821 50.000 0.00 0.00 0.00 2.41
2984 3217 3.178865 TCCTTTGTACCCCCTCTGTTAG 58.821 50.000 0.00 0.00 0.00 2.34
2985 3218 2.238898 CCTTTGTACCCCCTCTGTTAGG 59.761 54.545 0.00 0.00 46.09 2.69
3020 3253 8.873215 ATCGTTTAGATCACCAAAGTATAGTG 57.127 34.615 0.00 0.00 33.45 2.74
3021 3254 6.755141 TCGTTTAGATCACCAAAGTATAGTGC 59.245 38.462 0.00 0.00 0.00 4.40
3022 3255 6.757010 CGTTTAGATCACCAAAGTATAGTGCT 59.243 38.462 0.00 0.00 0.00 4.40
3023 3256 7.043325 CGTTTAGATCACCAAAGTATAGTGCTC 60.043 40.741 0.00 0.00 0.00 4.26
3024 3257 7.661536 TTAGATCACCAAAGTATAGTGCTCT 57.338 36.000 0.00 0.00 39.54 4.09
3025 3258 8.762481 TTAGATCACCAAAGTATAGTGCTCTA 57.238 34.615 0.00 0.00 37.89 2.43
3026 3259 7.661536 AGATCACCAAAGTATAGTGCTCTAA 57.338 36.000 0.00 0.00 35.76 2.10
3027 3260 8.079211 AGATCACCAAAGTATAGTGCTCTAAA 57.921 34.615 0.00 0.00 35.76 1.85
3028 3261 8.540388 AGATCACCAAAGTATAGTGCTCTAAAA 58.460 33.333 0.00 0.00 35.76 1.52
3029 3262 8.723942 ATCACCAAAGTATAGTGCTCTAAAAG 57.276 34.615 0.00 0.00 0.00 2.27
3030 3263 7.903145 TCACCAAAGTATAGTGCTCTAAAAGA 58.097 34.615 0.00 0.00 0.00 2.52
3031 3264 8.540388 TCACCAAAGTATAGTGCTCTAAAAGAT 58.460 33.333 0.00 0.00 0.00 2.40
3032 3265 8.821894 CACCAAAGTATAGTGCTCTAAAAGATC 58.178 37.037 0.00 0.00 0.00 2.75
3033 3266 8.763601 ACCAAAGTATAGTGCTCTAAAAGATCT 58.236 33.333 0.00 0.00 0.00 2.75
3034 3267 9.606631 CCAAAGTATAGTGCTCTAAAAGATCTT 57.393 33.333 0.88 0.88 0.00 2.40
3185 3443 0.255890 ATGCTAACAATGGCGTCCCT 59.744 50.000 0.00 0.00 35.46 4.20
3195 3456 1.068250 GGCGTCCCTCATAGAGCAC 59.932 63.158 0.00 0.00 0.00 4.40
3222 3483 6.806739 GCAGAGGTACAAAAATGGTAATTCAC 59.193 38.462 0.00 0.00 0.00 3.18
3268 3535 6.958767 TCATCTAGTCGATCATATCACCCTA 58.041 40.000 0.00 0.00 0.00 3.53
3269 3536 6.824196 TCATCTAGTCGATCATATCACCCTAC 59.176 42.308 0.00 0.00 0.00 3.18
3270 3537 5.498393 TCTAGTCGATCATATCACCCTACC 58.502 45.833 0.00 0.00 0.00 3.18
3272 3539 3.076182 AGTCGATCATATCACCCTACCCT 59.924 47.826 0.00 0.00 0.00 4.34
3273 3540 3.444388 GTCGATCATATCACCCTACCCTC 59.556 52.174 0.00 0.00 0.00 4.30
3274 3541 3.333980 TCGATCATATCACCCTACCCTCT 59.666 47.826 0.00 0.00 0.00 3.69
3275 3542 4.090090 CGATCATATCACCCTACCCTCTT 58.910 47.826 0.00 0.00 0.00 2.85
3281 3558 3.562108 TCACCCTACCCTCTTCTTCTT 57.438 47.619 0.00 0.00 0.00 2.52
3418 3704 3.858868 GACGCGGTTGAGCTGGTCA 62.859 63.158 12.47 5.28 34.40 4.02
3535 3821 3.066190 TTCGAGACCATCCGCCGT 61.066 61.111 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.486211 ACTGGGACTAGGGACAATCG 58.514 55.000 0.00 0.00 0.00 3.34
1 2 4.031611 AGTAACTGGGACTAGGGACAATC 58.968 47.826 0.00 0.00 0.00 2.67
2 3 4.076175 AGTAACTGGGACTAGGGACAAT 57.924 45.455 0.00 0.00 0.00 2.71
3 4 3.555117 AGTAACTGGGACTAGGGACAA 57.445 47.619 0.00 0.00 0.00 3.18
4 5 3.555117 AAGTAACTGGGACTAGGGACA 57.445 47.619 0.00 0.00 0.00 4.02
5 6 6.556974 AAATAAGTAACTGGGACTAGGGAC 57.443 41.667 0.00 0.00 0.00 4.46
6 7 6.069847 CCAAAATAAGTAACTGGGACTAGGGA 60.070 42.308 0.00 0.00 0.00 4.20
7 8 6.069847 TCCAAAATAAGTAACTGGGACTAGGG 60.070 42.308 0.00 0.00 0.00 3.53
8 9 6.822170 GTCCAAAATAAGTAACTGGGACTAGG 59.178 42.308 0.00 0.00 40.23 3.02
9 10 7.391620 TGTCCAAAATAAGTAACTGGGACTAG 58.608 38.462 0.00 0.00 43.01 2.57
10 11 7.319052 TGTCCAAAATAAGTAACTGGGACTA 57.681 36.000 0.00 0.00 43.01 2.59
11 12 6.195600 TGTCCAAAATAAGTAACTGGGACT 57.804 37.500 0.00 0.00 43.01 3.85
12 13 7.039993 ACAATGTCCAAAATAAGTAACTGGGAC 60.040 37.037 0.00 0.00 42.92 4.46
13 14 7.007723 ACAATGTCCAAAATAAGTAACTGGGA 58.992 34.615 0.00 0.00 0.00 4.37
14 15 7.227049 ACAATGTCCAAAATAAGTAACTGGG 57.773 36.000 0.00 0.00 0.00 4.45
26 27 9.528018 GAGAAACAAAGATAACAATGTCCAAAA 57.472 29.630 0.00 0.00 0.00 2.44
27 28 8.912988 AGAGAAACAAAGATAACAATGTCCAAA 58.087 29.630 0.00 0.00 0.00 3.28
28 29 8.352201 CAGAGAAACAAAGATAACAATGTCCAA 58.648 33.333 0.00 0.00 0.00 3.53
29 30 7.502226 ACAGAGAAACAAAGATAACAATGTCCA 59.498 33.333 0.00 0.00 0.00 4.02
30 31 7.875971 ACAGAGAAACAAAGATAACAATGTCC 58.124 34.615 0.00 0.00 0.00 4.02
31 32 9.387123 GAACAGAGAAACAAAGATAACAATGTC 57.613 33.333 0.00 0.00 0.00 3.06
32 33 9.125026 AGAACAGAGAAACAAAGATAACAATGT 57.875 29.630 0.00 0.00 0.00 2.71
104 105 8.961092 CATGCAACATTAGTATAGACAATTTGC 58.039 33.333 0.00 15.29 36.89 3.68
108 109 9.830975 TGTACATGCAACATTAGTATAGACAAT 57.169 29.630 0.00 0.00 0.00 2.71
127 129 7.255035 GGACATGGATCAGAAGAAATGTACATG 60.255 40.741 9.63 0.00 31.92 3.21
131 133 6.566079 AGGACATGGATCAGAAGAAATGTA 57.434 37.500 0.00 0.00 30.91 2.29
135 137 7.257790 TCTTAAGGACATGGATCAGAAGAAA 57.742 36.000 1.85 0.00 0.00 2.52
137 139 8.591940 CATATCTTAAGGACATGGATCAGAAGA 58.408 37.037 1.85 0.00 0.00 2.87
138 140 8.591940 TCATATCTTAAGGACATGGATCAGAAG 58.408 37.037 1.85 0.00 0.00 2.85
201 203 5.008019 CGCTAAGTCAAGGCATAATGACAAT 59.992 40.000 6.03 0.00 46.55 2.71
225 227 0.864455 GCATACGCTCTTGATCAGGC 59.136 55.000 0.00 3.86 34.30 4.85
238 240 5.196341 TCTGATACAGTTTAGGGCATACG 57.804 43.478 0.00 0.00 32.61 3.06
241 251 5.675538 GTCTTCTGATACAGTTTAGGGCAT 58.324 41.667 0.00 0.00 32.61 4.40
251 261 6.426327 CAGATGTCTACGTCTTCTGATACAG 58.574 44.000 11.15 0.00 40.04 2.74
252 262 5.220873 GCAGATGTCTACGTCTTCTGATACA 60.221 44.000 17.55 0.00 40.04 2.29
253 263 5.008217 AGCAGATGTCTACGTCTTCTGATAC 59.992 44.000 17.55 5.34 40.04 2.24
254 264 5.126779 AGCAGATGTCTACGTCTTCTGATA 58.873 41.667 17.55 0.47 40.04 2.15
255 265 3.951037 AGCAGATGTCTACGTCTTCTGAT 59.049 43.478 17.55 11.34 40.04 2.90
256 266 3.348119 AGCAGATGTCTACGTCTTCTGA 58.652 45.455 17.55 0.00 40.04 3.27
257 267 3.433709 CAGCAGATGTCTACGTCTTCTG 58.566 50.000 14.65 14.65 43.18 3.02
258 268 3.085533 ACAGCAGATGTCTACGTCTTCT 58.914 45.455 2.02 0.66 37.75 2.85
259 269 3.495670 ACAGCAGATGTCTACGTCTTC 57.504 47.619 2.02 0.00 37.75 2.87
281 291 2.880890 CTCCTGTTCAGGTGTCCAAAAG 59.119 50.000 17.00 2.84 0.00 2.27
283 293 1.843851 ACTCCTGTTCAGGTGTCCAAA 59.156 47.619 17.37 0.00 30.73 3.28
309 319 8.884726 AGAGAAGACGATTAGCCTAAAATTTTC 58.115 33.333 6.72 0.00 0.00 2.29
314 324 7.255871 GGGATAGAGAAGACGATTAGCCTAAAA 60.256 40.741 0.00 0.00 0.00 1.52
320 330 5.010213 ACAAGGGATAGAGAAGACGATTAGC 59.990 44.000 0.00 0.00 0.00 3.09
324 334 4.537751 TCACAAGGGATAGAGAAGACGAT 58.462 43.478 0.00 0.00 0.00 3.73
327 337 5.407407 TGTTCACAAGGGATAGAGAAGAC 57.593 43.478 0.00 0.00 0.00 3.01
333 343 3.370846 CCAGCATGTTCACAAGGGATAGA 60.371 47.826 0.00 0.00 0.00 1.98
335 345 2.308570 ACCAGCATGTTCACAAGGGATA 59.691 45.455 0.00 0.00 0.00 2.59
358 474 7.803659 GCTACAGAAGTAATCCAACAAAGAAAC 59.196 37.037 0.00 0.00 0.00 2.78
362 478 7.440523 AAGCTACAGAAGTAATCCAACAAAG 57.559 36.000 0.00 0.00 0.00 2.77
370 490 6.018343 GCTCCATGAAAGCTACAGAAGTAATC 60.018 42.308 11.50 0.00 36.80 1.75
372 492 5.178797 GCTCCATGAAAGCTACAGAAGTAA 58.821 41.667 11.50 0.00 36.80 2.24
383 503 4.577693 TGATTGTCATAGCTCCATGAAAGC 59.422 41.667 10.97 10.97 36.71 3.51
384 504 6.688637 TTGATTGTCATAGCTCCATGAAAG 57.311 37.500 0.65 0.00 36.71 2.62
387 507 6.829849 TGTATTGATTGTCATAGCTCCATGA 58.170 36.000 0.00 0.00 32.50 3.07
436 556 5.295787 GTGTGACCAACATCAACAAAGTAGA 59.704 40.000 0.00 0.00 41.97 2.59
437 557 5.065859 TGTGTGACCAACATCAACAAAGTAG 59.934 40.000 0.00 0.00 41.97 2.57
438 558 4.944317 TGTGTGACCAACATCAACAAAGTA 59.056 37.500 0.00 0.00 41.97 2.24
484 604 6.931281 TCTTAATGATAAAATCAGGAGCTCCG 59.069 38.462 26.95 20.71 43.53 4.63
518 638 4.041567 TGGCAGAATTGTAGAAAGGAGACA 59.958 41.667 0.00 0.00 0.00 3.41
550 670 9.973450 GAGTATCACACAGTATCAATTCATAGT 57.027 33.333 0.00 0.00 33.17 2.12
552 672 9.971922 CAGAGTATCACACAGTATCAATTCATA 57.028 33.333 0.00 0.00 37.82 2.15
578 699 2.319844 CATCATTAAGGAAAGGGGGCC 58.680 52.381 0.00 0.00 0.00 5.80
580 701 3.299503 CACCATCATTAAGGAAAGGGGG 58.700 50.000 14.12 5.58 0.00 5.40
880 1003 1.926511 CTGGCGGTGGCAAGTGAATC 61.927 60.000 0.00 0.00 42.47 2.52
1155 1278 7.549147 TCCAAAGTACTTAGTGGTGTAAGAT 57.451 36.000 20.76 0.00 34.58 2.40
1158 1281 6.932400 CACATCCAAAGTACTTAGTGGTGTAA 59.068 38.462 20.76 6.96 32.68 2.41
1305 1428 0.321564 TCTCAGGATTGCCACAACCG 60.322 55.000 0.00 0.00 36.29 4.44
1308 1431 1.699083 TCAGTCTCAGGATTGCCACAA 59.301 47.619 0.00 0.00 36.29 3.33
1509 1632 1.067749 CTCCTCATCAGCAGCCTCG 59.932 63.158 0.00 0.00 0.00 4.63
1608 1752 3.755378 GTGAGGTTGCATGTTCTTCATCT 59.245 43.478 0.00 0.00 34.09 2.90
1692 1848 1.375140 AGTCTGCCACTGCACATCG 60.375 57.895 0.00 0.00 44.23 3.84
1908 2070 4.498241 TGATCTCTTCAACCAGTTCATCG 58.502 43.478 0.00 0.00 0.00 3.84
2095 2257 1.376424 CTTCATCAGGCACCGCAGT 60.376 57.895 0.00 0.00 0.00 4.40
2142 2304 1.302033 CTTGCCACAGAACGCCTCT 60.302 57.895 0.00 0.00 33.23 3.69
2343 2505 1.356059 AGTACTGCCTCTCACTCCTCA 59.644 52.381 0.00 0.00 0.00 3.86
2407 2569 8.088981 GGAAAGACAAAGACTGACACTTATAGA 58.911 37.037 0.00 0.00 0.00 1.98
2408 2570 7.872993 TGGAAAGACAAAGACTGACACTTATAG 59.127 37.037 0.00 0.00 0.00 1.31
2423 2585 6.474102 GCAAATACGAAAAGTGGAAAGACAAA 59.526 34.615 0.00 0.00 0.00 2.83
2433 2595 4.606961 ACAACAGGCAAATACGAAAAGTG 58.393 39.130 0.00 0.00 0.00 3.16
2506 2716 3.955551 TGCAACCGACCAGACATACTATA 59.044 43.478 0.00 0.00 0.00 1.31
2508 2718 2.172679 TGCAACCGACCAGACATACTA 58.827 47.619 0.00 0.00 0.00 1.82
2510 2720 1.933853 GATGCAACCGACCAGACATAC 59.066 52.381 0.00 0.00 0.00 2.39
2522 2732 1.604593 AGGCACACCAGATGCAACC 60.605 57.895 0.00 0.00 45.27 3.77
2589 2799 9.603298 CAAACATCATATAATAGCATGTCACAC 57.397 33.333 0.00 0.00 0.00 3.82
2595 2805 8.508875 TCTGTGCAAACATCATATAATAGCATG 58.491 33.333 0.00 0.00 0.00 4.06
2601 2811 8.583810 GCAAATCTGTGCAAACATCATATAAT 57.416 30.769 0.00 0.00 44.29 1.28
2646 2859 5.200368 TCTAGCATGCAACTCAATATCGA 57.800 39.130 21.98 0.00 0.00 3.59
2649 2862 5.688807 AGGTTCTAGCATGCAACTCAATAT 58.311 37.500 21.98 0.00 0.00 1.28
2666 2879 6.950619 AGATTTCTGGATAAGCAAAAGGTTCT 59.049 34.615 0.00 0.00 0.00 3.01
2699 2912 5.607939 ATCAACATTACCCGTCTCATGTA 57.392 39.130 0.00 0.00 0.00 2.29
2700 2913 3.973206 TCAACATTACCCGTCTCATGT 57.027 42.857 0.00 0.00 0.00 3.21
2709 2922 7.222000 TGTAACTGGAAAATCAACATTACCC 57.778 36.000 0.00 0.00 0.00 3.69
2756 2969 3.741245 ACTCCTACTTGACTAGGCTGA 57.259 47.619 0.00 0.00 34.25 4.26
2759 2972 4.948621 TCAACTACTCCTACTTGACTAGGC 59.051 45.833 0.00 0.00 34.25 3.93
2773 2986 9.703892 AACATTAGCTGATATCATCAACTACTC 57.296 33.333 5.72 0.00 37.60 2.59
2774 2987 9.486497 CAACATTAGCTGATATCATCAACTACT 57.514 33.333 5.72 0.00 37.60 2.57
2777 2990 9.570468 AATCAACATTAGCTGATATCATCAACT 57.430 29.630 5.72 4.62 39.11 3.16
2779 2992 8.789762 CCAATCAACATTAGCTGATATCATCAA 58.210 33.333 5.72 1.32 39.11 2.57
2782 2995 6.152323 GCCCAATCAACATTAGCTGATATCAT 59.848 38.462 5.72 0.00 30.66 2.45
2783 2996 5.474532 GCCCAATCAACATTAGCTGATATCA 59.525 40.000 5.07 5.07 30.66 2.15
2784 2997 5.474532 TGCCCAATCAACATTAGCTGATATC 59.525 40.000 0.00 0.00 30.66 1.63
2785 2998 5.387788 TGCCCAATCAACATTAGCTGATAT 58.612 37.500 0.00 0.00 30.66 1.63
2853 3067 2.890311 ACCTCTCTCTCACACACAGAAG 59.110 50.000 0.00 0.00 0.00 2.85
2861 3075 9.675464 TTTAAGTTTAAAAACCTCTCTCTCACA 57.325 29.630 2.02 0.00 39.71 3.58
2897 3111 9.277783 GCTATATATCTCCACAAATCACAACTT 57.722 33.333 0.00 0.00 0.00 2.66
2927 3141 1.704070 AGGGCCATGGCAAAAATTTCA 59.296 42.857 36.56 0.00 44.11 2.69
2951 3166 4.327680 GGTACAAAGGAGAGCATGAAGTT 58.672 43.478 0.00 0.00 0.00 2.66
2973 3206 7.038941 ACGATCTTATATTTCCTAACAGAGGGG 60.039 40.741 0.00 0.00 46.70 4.79
2974 3207 7.897864 ACGATCTTATATTTCCTAACAGAGGG 58.102 38.462 0.00 0.00 46.70 4.30
2995 3228 7.438459 GCACTATACTTTGGTGATCTAAACGAT 59.562 37.037 0.00 0.00 33.32 3.73
2996 3229 6.755141 GCACTATACTTTGGTGATCTAAACGA 59.245 38.462 0.00 0.00 33.32 3.85
2997 3230 6.757010 AGCACTATACTTTGGTGATCTAAACG 59.243 38.462 0.00 0.00 33.32 3.60
2998 3231 8.132604 GAGCACTATACTTTGGTGATCTAAAC 57.867 38.462 0.00 0.00 41.35 2.01
3003 3236 8.718102 TTTTAGAGCACTATACTTTGGTGATC 57.282 34.615 0.00 0.00 43.78 2.92
3004 3237 8.540388 TCTTTTAGAGCACTATACTTTGGTGAT 58.460 33.333 0.00 0.00 33.32 3.06
3005 3238 7.903145 TCTTTTAGAGCACTATACTTTGGTGA 58.097 34.615 0.00 0.00 33.32 4.02
3006 3239 8.723942 ATCTTTTAGAGCACTATACTTTGGTG 57.276 34.615 0.00 0.00 0.00 4.17
3007 3240 8.763601 AGATCTTTTAGAGCACTATACTTTGGT 58.236 33.333 0.00 0.00 31.99 3.67
3008 3241 9.606631 AAGATCTTTTAGAGCACTATACTTTGG 57.393 33.333 0.88 0.00 31.99 3.28
3035 3268 9.781425 ATCATGTACTCCCTCTATCAAGAATAT 57.219 33.333 0.00 0.00 0.00 1.28
3036 3269 9.029368 CATCATGTACTCCCTCTATCAAGAATA 57.971 37.037 0.00 0.00 0.00 1.75
3037 3270 7.732140 TCATCATGTACTCCCTCTATCAAGAAT 59.268 37.037 0.00 0.00 0.00 2.40
3038 3271 7.014711 GTCATCATGTACTCCCTCTATCAAGAA 59.985 40.741 0.00 0.00 0.00 2.52
3039 3272 6.491745 GTCATCATGTACTCCCTCTATCAAGA 59.508 42.308 0.00 0.00 0.00 3.02
3040 3273 6.266330 TGTCATCATGTACTCCCTCTATCAAG 59.734 42.308 0.00 0.00 0.00 3.02
3041 3274 6.136155 TGTCATCATGTACTCCCTCTATCAA 58.864 40.000 0.00 0.00 0.00 2.57
3042 3275 5.705400 TGTCATCATGTACTCCCTCTATCA 58.295 41.667 0.00 0.00 0.00 2.15
3043 3276 6.007076 TCTGTCATCATGTACTCCCTCTATC 58.993 44.000 0.00 0.00 0.00 2.08
3044 3277 5.958321 TCTGTCATCATGTACTCCCTCTAT 58.042 41.667 0.00 0.00 0.00 1.98
3045 3278 5.388599 TCTGTCATCATGTACTCCCTCTA 57.611 43.478 0.00 0.00 0.00 2.43
3046 3279 4.256983 TCTGTCATCATGTACTCCCTCT 57.743 45.455 0.00 0.00 0.00 3.69
3047 3280 4.646945 TCTTCTGTCATCATGTACTCCCTC 59.353 45.833 0.00 0.00 0.00 4.30
3048 3281 4.614475 TCTTCTGTCATCATGTACTCCCT 58.386 43.478 0.00 0.00 0.00 4.20
3049 3282 5.543507 ATCTTCTGTCATCATGTACTCCC 57.456 43.478 0.00 0.00 0.00 4.30
3050 3283 8.363390 TCATAATCTTCTGTCATCATGTACTCC 58.637 37.037 0.00 0.00 0.00 3.85
3051 3284 9.755804 TTCATAATCTTCTGTCATCATGTACTC 57.244 33.333 0.00 0.00 0.00 2.59
3123 3381 4.465632 CCAGTGTTGGCATGTACTACTA 57.534 45.455 0.00 0.00 37.73 1.82
3124 3382 3.334583 CCAGTGTTGGCATGTACTACT 57.665 47.619 0.00 0.00 37.73 2.57
3185 3443 1.857965 ACCTCTGCTGTGCTCTATGA 58.142 50.000 0.00 0.00 0.00 2.15
3195 3456 5.957842 TTACCATTTTTGTACCTCTGCTG 57.042 39.130 0.00 0.00 0.00 4.41
3222 3483 8.689251 ATGATCGGTGTTATTATATGAGAACG 57.311 34.615 1.20 0.00 0.00 3.95
3240 3501 6.426327 GTGATATGATCGACTAGATGATCGG 58.574 44.000 17.81 0.00 43.10 4.18
3268 3535 1.186267 ACGCGGAAGAAGAAGAGGGT 61.186 55.000 12.47 0.00 0.00 4.34
3269 3536 0.458716 GACGCGGAAGAAGAAGAGGG 60.459 60.000 12.47 0.00 0.00 4.30
3270 3537 0.458716 GGACGCGGAAGAAGAAGAGG 60.459 60.000 12.47 0.00 0.00 3.69
3272 3539 0.526662 GAGGACGCGGAAGAAGAAGA 59.473 55.000 12.47 0.00 0.00 2.87
3273 3540 0.458716 GGAGGACGCGGAAGAAGAAG 60.459 60.000 12.47 0.00 0.00 2.85
3274 3541 1.183030 TGGAGGACGCGGAAGAAGAA 61.183 55.000 12.47 0.00 0.00 2.52
3275 3542 1.605451 TGGAGGACGCGGAAGAAGA 60.605 57.895 12.47 0.00 0.00 2.87
3307 3584 4.821589 GAGAAGCTCCCGGTGCCG 62.822 72.222 12.27 3.25 39.44 5.69
3358 3644 1.298157 TGCGCGACAATTCTTCCCTG 61.298 55.000 12.10 0.00 0.00 4.45
3362 3648 0.790866 GTGCTGCGCGACAATTCTTC 60.791 55.000 12.10 0.00 0.00 2.87
3363 3649 1.207593 GTGCTGCGCGACAATTCTT 59.792 52.632 12.10 0.00 0.00 2.52
3364 3650 2.863153 GTGCTGCGCGACAATTCT 59.137 55.556 12.10 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.