Multiple sequence alignment - TraesCS6D01G267700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G267700 chr6D 100.000 8575 0 0 1 8575 377825569 377834143 0.000000e+00 15836.0
1 TraesCS6D01G267700 chr6D 94.118 85 5 0 6781 6865 450832033 450832117 6.990000e-26 130.0
2 TraesCS6D01G267700 chr6D 97.619 42 1 0 7289 7330 377832743 377832784 1.190000e-08 73.1
3 TraesCS6D01G267700 chr6D 97.619 42 1 0 7175 7216 377832857 377832898 1.190000e-08 73.1
4 TraesCS6D01G267700 chr6B 92.196 2473 101 34 3405 5811 564216154 564218600 0.000000e+00 3413.0
5 TraesCS6D01G267700 chr6B 94.241 1997 64 22 1 1986 564061257 564063213 0.000000e+00 3003.0
6 TraesCS6D01G267700 chr6B 93.758 801 39 3 7163 7958 564219976 564220770 0.000000e+00 1192.0
7 TraesCS6D01G267700 chr6B 89.351 817 50 10 5922 6731 564218832 564219618 0.000000e+00 992.0
8 TraesCS6D01G267700 chr6B 89.586 701 57 9 2603 3292 564215216 564215911 0.000000e+00 876.0
9 TraesCS6D01G267700 chr6B 88.268 537 50 5 2080 2605 564214642 564215176 1.570000e-176 630.0
10 TraesCS6D01G267700 chr6B 93.898 295 18 0 6866 7160 564219611 564219905 6.110000e-121 446.0
11 TraesCS6D01G267700 chr6B 84.821 448 49 15 8032 8476 564220804 564221235 4.750000e-117 433.0
12 TraesCS6D01G267700 chr6B 91.781 73 3 1 5809 5878 564218761 564218833 1.970000e-16 99.0
13 TraesCS6D01G267700 chr6B 96.364 55 2 0 2027 2081 564063208 564063262 3.300000e-14 91.6
14 TraesCS6D01G267700 chr6B 97.500 40 1 0 7177 7216 564220098 564220137 1.540000e-07 69.4
15 TraesCS6D01G267700 chr6A 91.934 2058 106 23 3848 5878 519222570 519224594 0.000000e+00 2826.0
16 TraesCS6D01G267700 chr6A 91.608 1692 87 22 946 2605 519219073 519220741 0.000000e+00 2287.0
17 TraesCS6D01G267700 chr6A 91.189 1396 89 14 7163 8548 519226491 519227862 0.000000e+00 1866.0
18 TraesCS6D01G267700 chr6A 92.458 769 35 8 1 769 519217048 519217793 0.000000e+00 1077.0
19 TraesCS6D01G267700 chr6A 87.978 915 82 14 2603 3498 519220781 519221686 0.000000e+00 1055.0
20 TraesCS6D01G267700 chr6A 92.809 598 31 8 6136 6731 519225592 519226179 0.000000e+00 856.0
21 TraesCS6D01G267700 chr6A 88.579 359 19 9 3518 3861 519222198 519222549 4.790000e-112 416.0
22 TraesCS6D01G267700 chr6A 91.981 212 17 0 6949 7160 519226232 519226443 1.810000e-76 298.0
23 TraesCS6D01G267700 chr6A 90.184 163 11 2 755 913 519218910 519219071 3.140000e-49 207.0
24 TraesCS6D01G267700 chr6A 81.579 228 16 11 5922 6147 519224593 519224796 1.920000e-36 165.0
25 TraesCS6D01G267700 chr6A 100.000 28 0 0 7303 7330 519226514 519226541 1.600000e-02 52.8
26 TraesCS6D01G267700 chr3A 89.381 226 22 1 116 341 17554271 17554048 5.070000e-72 283.0
27 TraesCS6D01G267700 chr1B 92.593 135 10 0 6733 6867 119126418 119126552 2.440000e-45 195.0
28 TraesCS6D01G267700 chr5D 91.852 135 11 0 6733 6867 5794791 5794925 1.140000e-43 189.0
29 TraesCS6D01G267700 chr5B 90.566 106 10 0 6734 6839 418466912 418467017 3.230000e-29 141.0
30 TraesCS6D01G267700 chr3D 93.407 91 5 1 6781 6871 26165779 26165690 5.400000e-27 134.0
31 TraesCS6D01G267700 chr2D 94.118 85 5 0 6781 6865 215831883 215831967 6.990000e-26 130.0
32 TraesCS6D01G267700 chr7A 93.023 86 6 0 6781 6866 428822241 428822326 9.040000e-25 126.0
33 TraesCS6D01G267700 chr5A 92.941 85 6 0 6781 6865 643242048 643242132 3.250000e-24 124.0
34 TraesCS6D01G267700 chr1A 92.045 88 7 0 6781 6868 545919720 545919633 3.250000e-24 124.0
35 TraesCS6D01G267700 chr7D 75.510 147 28 6 8169 8311 1957574 1957432 2.000000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G267700 chr6D 377825569 377834143 8574 False 5327.400000 15836 98.412667 1 8575 3 chr6D.!!$F2 8574
1 TraesCS6D01G267700 chr6B 564061257 564063262 2005 False 1547.300000 3003 95.302500 1 2081 2 chr6B.!!$F1 2080
2 TraesCS6D01G267700 chr6B 564214642 564221235 6593 False 905.600000 3413 91.239889 2080 8476 9 chr6B.!!$F2 6396
3 TraesCS6D01G267700 chr6A 519217048 519227862 10814 False 1009.618182 2826 90.936273 1 8548 11 chr6A.!!$F1 8547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 2081 0.742281 CCTGAACATGAGGTGAGCCG 60.742 60.000 0.00 0.0 40.5 5.52 F
1924 3104 1.202627 GCAGGAGGAGAAGATCGCAAT 60.203 52.381 0.00 0.0 0.0 3.56 F
3338 4754 0.030908 GTCTATCTCCCTTCGTGCCG 59.969 60.000 0.00 0.0 0.0 5.69 F
5029 7040 0.037975 AGTCGCGGGTTGAATACGTT 60.038 50.000 6.13 0.0 0.0 3.99 F
6788 9794 0.755698 CCACCCTCTCTAGCGCCTAA 60.756 60.000 2.29 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 3485 0.033011 ATCGACTCCACCACCTAGCT 60.033 55.0 0.00 0.0 0.00 3.32 R
3668 5600 0.037419 GGTGCATTTTGCCAATCGGT 60.037 50.0 0.00 0.0 44.23 4.69 R
5236 7262 0.732880 GCGCTCTTAGACAACTGCGA 60.733 55.0 15.21 0.0 45.15 5.10 R
6790 9796 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.0 0.00 0.0 0.00 6.13 R
7994 11076 0.099082 GTGAACCCAAACGAACGCAA 59.901 50.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.156504 GCAGTTGAGTTCTGACACGATG 59.843 50.000 0.00 0.00 35.20 3.84
146 147 2.270434 ACTCCTGGAGCCTAATGGAA 57.730 50.000 23.43 0.00 32.04 3.53
302 303 1.194781 AGCTGACGGTGAAGGTGGAT 61.195 55.000 0.00 0.00 0.00 3.41
442 443 2.856032 CAGAGTTCTGTTGCGCGG 59.144 61.111 8.83 0.00 39.09 6.46
503 504 2.046411 TGCGTGGCCATAGTGGTG 60.046 61.111 9.72 0.00 40.46 4.17
633 634 5.641209 CAGGCTATCTAGAAATGAATTCGGG 59.359 44.000 0.00 0.00 43.15 5.14
640 641 2.355756 AGAAATGAATTCGGGCGTGATG 59.644 45.455 0.04 0.00 43.15 3.07
692 694 3.370527 GGGTTTGAGCCTTGCTATGAGTA 60.371 47.826 0.00 0.00 39.88 2.59
731 733 7.798596 ATCTATTTACATGGCTCTGAACTTG 57.201 36.000 0.00 0.00 0.00 3.16
841 1978 5.041191 ACTTTTAGCCCTATCATCTGGTG 57.959 43.478 0.00 0.00 0.00 4.17
856 1993 2.203337 GTGGTTGTGCAGGGCAGA 60.203 61.111 0.00 0.00 40.08 4.26
882 2019 3.833645 CGAACGGGGCATCTCGGA 61.834 66.667 0.00 0.00 0.00 4.55
944 2081 0.742281 CCTGAACATGAGGTGAGCCG 60.742 60.000 0.00 0.00 40.50 5.52
1192 2337 1.755008 GACACTCCCCTCTCCTCCG 60.755 68.421 0.00 0.00 0.00 4.63
1233 2378 4.222847 GACACTCCGCCCGATCCC 62.223 72.222 0.00 0.00 0.00 3.85
1243 2388 2.609339 CCGATCCCCTCCTCCTCA 59.391 66.667 0.00 0.00 0.00 3.86
1263 2408 4.666512 TCATCATCATCATCCTCGTCCTA 58.333 43.478 0.00 0.00 0.00 2.94
1336 2481 5.479027 TGCAATATCAGATGGGAATGAATGG 59.521 40.000 0.00 0.00 0.00 3.16
1377 2535 6.358974 AGGAGGAAGAAGAAGAAGAAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
1379 2537 6.556874 AGGAGGAAGAAGAAGAAGAAGAAGAA 59.443 38.462 0.00 0.00 0.00 2.52
1380 2538 6.873605 GGAGGAAGAAGAAGAAGAAGAAGAAG 59.126 42.308 0.00 0.00 0.00 2.85
1381 2539 7.256154 GGAGGAAGAAGAAGAAGAAGAAGAAGA 60.256 40.741 0.00 0.00 0.00 2.87
1382 2540 8.028652 AGGAAGAAGAAGAAGAAGAAGAAGAA 57.971 34.615 0.00 0.00 0.00 2.52
1383 2541 8.150296 AGGAAGAAGAAGAAGAAGAAGAAGAAG 58.850 37.037 0.00 0.00 0.00 2.85
1384 2542 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
1385 2543 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1386 2544 9.898152 AAGAAGAAGAAGAAGAAGAAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
1387 2545 9.898152 AGAAGAAGAAGAAGAAGAAGAAGAAAA 57.102 29.630 0.00 0.00 0.00 2.29
1389 2547 9.898152 AAGAAGAAGAAGAAGAAGAAGAAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
1436 2594 4.517285 TGCTGTAGGATTGGTTCATCTTC 58.483 43.478 0.00 0.00 0.00 2.87
1611 2769 3.706373 GGCCAGCCTCCGTCTGAA 61.706 66.667 0.00 0.00 33.54 3.02
1640 2801 4.725359 TCTTGTTTCAATGCATCATCACG 58.275 39.130 0.00 0.00 0.00 4.35
1776 2941 5.301555 TGATCAACTCACCGACATGTTTTA 58.698 37.500 0.00 0.00 0.00 1.52
1777 2942 5.937540 TGATCAACTCACCGACATGTTTTAT 59.062 36.000 0.00 0.00 0.00 1.40
1778 2943 5.605564 TCAACTCACCGACATGTTTTATG 57.394 39.130 0.00 0.00 0.00 1.90
1779 2944 5.060506 TCAACTCACCGACATGTTTTATGT 58.939 37.500 0.00 0.00 34.52 2.29
1839 3004 3.761752 CGAGAGAAAATTTTGCCCCCTTA 59.238 43.478 8.47 0.00 0.00 2.69
1924 3104 1.202627 GCAGGAGGAGAAGATCGCAAT 60.203 52.381 0.00 0.00 0.00 3.56
2014 3194 1.748493 GCACATTTCCCAGCGGATTTA 59.252 47.619 0.00 0.00 38.24 1.40
2024 3204 3.118371 CCCAGCGGATTTAGTTTACTCCT 60.118 47.826 0.00 0.00 0.00 3.69
2029 3209 7.417116 CCAGCGGATTTAGTTTACTCCTACTAA 60.417 40.741 0.00 0.00 35.62 2.24
2188 3372 2.808906 AGTGACTATTTTCCCCCTGC 57.191 50.000 0.00 0.00 0.00 4.85
2205 3395 5.770162 CCCCCTGCTCATAAGTAAAATTAGG 59.230 44.000 0.00 0.00 0.00 2.69
2262 3457 4.373116 GTCACTGCTTCCGCCGGA 62.373 66.667 5.05 0.00 34.43 5.14
2289 3484 0.320421 GGTAGCTGCGTCCTGTTTGA 60.320 55.000 0.00 0.00 0.00 2.69
2290 3485 1.508632 GTAGCTGCGTCCTGTTTGAA 58.491 50.000 0.00 0.00 0.00 2.69
2308 3503 0.251653 AAGCTAGGTGGTGGAGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
2376 3571 1.355210 CGAGCAAACACGCACCTTT 59.645 52.632 0.00 0.00 0.00 3.11
2422 3617 0.909610 TCGGGCCAAGAAGATGGAGT 60.910 55.000 4.39 0.00 43.54 3.85
2429 3624 1.927174 CAAGAAGATGGAGTAACGGCG 59.073 52.381 4.80 4.80 0.00 6.46
2448 3643 4.208686 CGAGGCGTAGGAGGTGGC 62.209 72.222 0.00 0.00 0.00 5.01
2459 3654 3.432051 GAGGTGGCGGACGGATGAG 62.432 68.421 0.00 0.00 0.00 2.90
2519 3714 1.710013 CGATTGTTGTGAGGCGTAGT 58.290 50.000 0.00 0.00 0.00 2.73
2522 3717 2.605837 TTGTTGTGAGGCGTAGTTGA 57.394 45.000 0.00 0.00 0.00 3.18
2554 3749 1.161563 GGCGAAACACTGAACCCGAA 61.162 55.000 0.00 0.00 0.00 4.30
2576 3771 1.885388 CTGACAACGCCCGACACAA 60.885 57.895 0.00 0.00 0.00 3.33
2653 3890 2.360350 CCGAGGTGGTGCAGCATT 60.360 61.111 23.18 13.62 33.95 3.56
2659 3896 1.174712 GGTGGTGCAGCATTGACACT 61.175 55.000 23.18 0.00 34.16 3.55
2663 3900 1.528776 TGCAGCATTGACACTGGCA 60.529 52.632 0.00 0.00 34.38 4.92
2679 3916 2.751436 CAATGGGTGGTGGGAGCG 60.751 66.667 0.00 0.00 0.00 5.03
2687 3924 4.699522 GGTGGGAGCGAGCGGTTT 62.700 66.667 0.00 0.00 0.00 3.27
2752 3994 3.546714 AAAGGGAGAACGCCGGTGG 62.547 63.158 21.14 6.53 0.00 4.61
2803 4045 1.184970 TGACATCCCACAGACTCGCA 61.185 55.000 0.00 0.00 0.00 5.10
2808 4050 2.031012 CCACAGACTCGCAAGGCA 59.969 61.111 0.00 0.00 30.24 4.75
2811 4053 0.952497 CACAGACTCGCAAGGCACAT 60.952 55.000 0.00 0.00 30.24 3.21
2931 4174 1.882167 GCGAGAGAGATGGCACTGC 60.882 63.158 0.00 0.00 0.00 4.40
3002 4245 7.996385 AGGGATTTTTACGGAATCATGTAAAG 58.004 34.615 9.07 0.00 40.48 1.85
3109 4354 2.012794 GGGGGAAAGGCAGGGGTAT 61.013 63.158 0.00 0.00 0.00 2.73
3111 4356 1.228190 GGGGAAAGGCAGGGGTATAA 58.772 55.000 0.00 0.00 0.00 0.98
3155 4400 1.772567 ACCCACTGGTTACTGCCCA 60.773 57.895 0.00 0.00 44.75 5.36
3160 4405 0.405585 ACTGGTTACTGCCCATTGCT 59.594 50.000 0.00 0.00 42.00 3.91
3165 4410 2.436417 GTTACTGCCCATTGCTTCTGA 58.564 47.619 0.00 0.00 42.00 3.27
3172 4417 3.137533 GCCCATTGCTTCTGAGATCTAC 58.862 50.000 0.00 0.00 36.87 2.59
3180 4425 4.040339 TGCTTCTGAGATCTACACCAACAA 59.960 41.667 0.00 0.00 0.00 2.83
3190 4435 8.691661 AGATCTACACCAACAATAGTTTTTGT 57.308 30.769 0.00 0.00 41.49 2.83
3219 4468 0.751643 TCATCCTCACTCGCATCCGA 60.752 55.000 0.00 0.00 42.01 4.55
3255 4504 5.187687 GGTCGACCACCCATTCTTAAATTA 58.812 41.667 29.75 0.00 39.69 1.40
3276 4525 3.740115 ACTCCAAGTCAAACACGCTTAT 58.260 40.909 0.00 0.00 0.00 1.73
3338 4754 0.030908 GTCTATCTCCCTTCGTGCCG 59.969 60.000 0.00 0.00 0.00 5.69
3389 4805 8.401709 GGCCAAAAGTTCACATAAATTCAAAAA 58.598 29.630 0.00 0.00 0.00 1.94
3406 4822 9.588096 AATTCAAAAATTTACAGAGGGAGTAGT 57.412 29.630 0.00 0.00 30.79 2.73
3427 4847 2.500392 TGGTAACTGGTATGTTGGCC 57.500 50.000 0.00 0.00 37.61 5.36
3448 4875 2.669434 CCTACGTTGGTATGTTGGTTCG 59.331 50.000 7.97 0.00 33.23 3.95
3500 4935 3.461061 TCTGCCATAGCTTCTGAATTCG 58.539 45.455 0.00 0.00 40.80 3.34
3573 5492 1.350019 GCAACTACCACCCCTACAAGT 59.650 52.381 0.00 0.00 0.00 3.16
3625 5556 3.898123 ACTCTGACTTCTTGGAAGCAGTA 59.102 43.478 19.93 12.27 32.66 2.74
3647 5579 2.037053 CACACCGAATTTGTGGGCA 58.963 52.632 12.11 0.00 40.66 5.36
3662 5594 1.443802 GGGCAACTAGCTCAACAGAC 58.556 55.000 0.00 0.00 45.63 3.51
3663 5595 1.443802 GGCAACTAGCTCAACAGACC 58.556 55.000 0.00 0.00 44.79 3.85
3664 5596 1.002544 GGCAACTAGCTCAACAGACCT 59.997 52.381 0.00 0.00 44.79 3.85
3666 5598 2.933056 GCAACTAGCTCAACAGACCTCC 60.933 54.545 0.00 0.00 41.15 4.30
3668 5600 3.741245 ACTAGCTCAACAGACCTCCTA 57.259 47.619 0.00 0.00 0.00 2.94
3669 5601 3.358118 ACTAGCTCAACAGACCTCCTAC 58.642 50.000 0.00 0.00 0.00 3.18
3736 5668 0.108329 ATCGACAGGAAAACGGCGAT 60.108 50.000 16.62 0.00 32.42 4.58
3750 5682 1.005347 CGGCGATGGTAAACGAACATC 60.005 52.381 0.00 0.00 38.06 3.06
3755 5687 4.914312 GATGGTAAACGAACATCGACAA 57.086 40.909 6.78 0.00 43.74 3.18
3850 5789 7.490000 AGTAATTCACCTAAGACTCCATAACG 58.510 38.462 0.00 0.00 0.00 3.18
3861 5834 3.375699 ACTCCATAACGGATGTTCCTCT 58.624 45.455 0.00 0.00 45.19 3.69
3905 5878 8.822805 TCTCAAGACTAACATTAAACCCTACAT 58.177 33.333 0.00 0.00 0.00 2.29
3912 5885 8.262227 ACTAACATTAAACCCTACATCGATGAA 58.738 33.333 31.33 12.87 0.00 2.57
3935 5908 2.095161 CAGACCTAACGATCGATAGCCC 60.095 54.545 24.34 16.18 0.00 5.19
3943 5916 4.537135 ACGATCGATAGCCCACATTAAT 57.463 40.909 24.34 0.00 0.00 1.40
3944 5917 5.654603 ACGATCGATAGCCCACATTAATA 57.345 39.130 24.34 0.00 0.00 0.98
3945 5918 6.032956 ACGATCGATAGCCCACATTAATAA 57.967 37.500 24.34 0.00 0.00 1.40
3947 5920 5.291128 CGATCGATAGCCCACATTAATAACC 59.709 44.000 10.26 0.00 0.00 2.85
3948 5921 5.818678 TCGATAGCCCACATTAATAACCT 57.181 39.130 0.00 0.00 0.00 3.50
3949 5922 5.790593 TCGATAGCCCACATTAATAACCTC 58.209 41.667 0.00 0.00 0.00 3.85
3950 5923 5.542635 TCGATAGCCCACATTAATAACCTCT 59.457 40.000 0.00 0.00 0.00 3.69
3951 5924 6.042781 TCGATAGCCCACATTAATAACCTCTT 59.957 38.462 0.00 0.00 0.00 2.85
3952 5925 6.369065 CGATAGCCCACATTAATAACCTCTTC 59.631 42.308 0.00 0.00 0.00 2.87
3953 5926 4.793201 AGCCCACATTAATAACCTCTTCC 58.207 43.478 0.00 0.00 0.00 3.46
3954 5927 4.229582 AGCCCACATTAATAACCTCTTCCA 59.770 41.667 0.00 0.00 0.00 3.53
3955 5928 4.953579 GCCCACATTAATAACCTCTTCCAA 59.046 41.667 0.00 0.00 0.00 3.53
3956 5929 5.067805 GCCCACATTAATAACCTCTTCCAAG 59.932 44.000 0.00 0.00 0.00 3.61
4235 6214 4.457496 CAGCGTGGAGTGCCCGAT 62.457 66.667 0.00 0.00 37.93 4.18
4462 6441 0.383231 GGCCGCCATGAATCAAGAAG 59.617 55.000 3.91 0.00 0.00 2.85
4463 6442 1.098050 GCCGCCATGAATCAAGAAGT 58.902 50.000 0.00 0.00 0.00 3.01
4473 6452 6.429078 CCATGAATCAAGAAGTCAAAGTGAGA 59.571 38.462 0.00 0.00 0.00 3.27
4478 6457 0.161870 GAAGTCAAAGTGAGACGCGC 59.838 55.000 5.73 0.00 40.84 6.86
4496 6488 2.668279 GCGCACCAAACTAATCAACCAG 60.668 50.000 0.30 0.00 0.00 4.00
4504 6496 6.725834 ACCAAACTAATCAACCAGGAATGAAT 59.274 34.615 0.00 0.00 0.00 2.57
4512 6504 2.250031 ACCAGGAATGAATGCTTTGCA 58.750 42.857 0.00 0.00 44.86 4.08
4515 6507 3.621268 CCAGGAATGAATGCTTTGCAATG 59.379 43.478 0.00 3.50 43.62 2.82
4529 6521 2.703416 TGCAATGATCAAGAAGAGCGT 58.297 42.857 0.00 0.00 34.70 5.07
4552 6556 1.595382 GGGTTCGATCTGGATGCGG 60.595 63.158 0.00 0.00 0.00 5.69
4685 6692 3.760035 CTGTACACCGCGGGCTCT 61.760 66.667 31.76 4.77 0.00 4.09
5029 7040 0.037975 AGTCGCGGGTTGAATACGTT 60.038 50.000 6.13 0.00 0.00 3.99
5041 7052 5.335127 GTTGAATACGTTAGCCTCGTTAGA 58.665 41.667 0.00 0.00 41.72 2.10
5044 7055 5.355071 TGAATACGTTAGCCTCGTTAGAAGA 59.645 40.000 0.00 0.00 41.72 2.87
5052 7063 5.824904 AGCCTCGTTAGAAGACGTATTTA 57.175 39.130 0.00 0.00 43.23 1.40
5157 7168 1.608717 CCTCTCCGAACCCAGGACTG 61.609 65.000 0.00 0.00 33.58 3.51
5628 7654 3.620427 TGCCTTCCTCGCTATGTTTTA 57.380 42.857 0.00 0.00 0.00 1.52
5636 7662 3.248602 CCTCGCTATGTTTTATGCTCACC 59.751 47.826 0.00 0.00 0.00 4.02
5642 7668 5.293569 GCTATGTTTTATGCTCACCGTAAGT 59.706 40.000 0.00 0.00 0.00 2.24
5643 7669 6.477688 GCTATGTTTTATGCTCACCGTAAGTA 59.522 38.462 0.00 0.00 0.00 2.24
5644 7670 6.903883 ATGTTTTATGCTCACCGTAAGTAG 57.096 37.500 0.00 0.00 0.00 2.57
5645 7671 5.786311 TGTTTTATGCTCACCGTAAGTAGT 58.214 37.500 0.00 0.00 0.00 2.73
5646 7672 6.923012 TGTTTTATGCTCACCGTAAGTAGTA 58.077 36.000 0.00 0.00 0.00 1.82
5647 7673 6.808212 TGTTTTATGCTCACCGTAAGTAGTAC 59.192 38.462 0.00 0.00 0.00 2.73
5679 7705 7.600960 TGATGATCAGAGACTCATAGTAATGC 58.399 38.462 5.02 0.00 32.36 3.56
5706 7732 5.200483 TGAAAGGGGATTATGCGATTCTTT 58.800 37.500 0.00 0.00 0.00 2.52
5741 7767 2.411535 CGTATGCACGGGGAGAGTA 58.588 57.895 0.00 0.00 44.59 2.59
5765 7791 1.618343 GGCCTTGTTGCTGTAATTGGT 59.382 47.619 0.00 0.00 0.00 3.67
5858 8047 5.448632 CCTTCGTTGTTGTAGTGAAAGCTTT 60.449 40.000 12.53 12.53 0.00 3.51
5862 8051 6.019318 TCGTTGTTGTAGTGAAAGCTTTAGTC 60.019 38.462 12.68 0.00 0.00 2.59
5863 8052 6.427974 GTTGTTGTAGTGAAAGCTTTAGTCC 58.572 40.000 12.68 0.00 0.00 3.85
5864 8053 5.061179 TGTTGTAGTGAAAGCTTTAGTCCC 58.939 41.667 12.68 0.00 0.00 4.46
5865 8054 5.163237 TGTTGTAGTGAAAGCTTTAGTCCCT 60.163 40.000 12.68 6.28 0.00 4.20
5866 8055 5.562298 TGTAGTGAAAGCTTTAGTCCCTT 57.438 39.130 12.68 0.00 0.00 3.95
5867 8056 5.937111 TGTAGTGAAAGCTTTAGTCCCTTT 58.063 37.500 12.68 0.00 0.00 3.11
5868 8057 5.995897 TGTAGTGAAAGCTTTAGTCCCTTTC 59.004 40.000 12.68 0.00 42.81 2.62
5871 8060 6.129874 AGTGAAAGCTTTAGTCCCTTTCTTT 58.870 36.000 12.68 0.00 42.89 2.52
5913 8102 7.531857 GATGATTACATCTACCTGAAGGAGA 57.468 40.000 2.62 2.45 46.47 3.71
5914 8103 8.133024 GATGATTACATCTACCTGAAGGAGAT 57.867 38.462 2.62 4.67 46.47 2.75
5915 8104 7.295322 TGATTACATCTACCTGAAGGAGATG 57.705 40.000 23.28 23.28 45.20 2.90
5916 8105 5.537300 TTACATCTACCTGAAGGAGATGC 57.463 43.478 24.07 0.00 44.49 3.91
5917 8106 2.363680 ACATCTACCTGAAGGAGATGCG 59.636 50.000 24.07 12.34 44.49 4.73
5918 8107 2.437085 TCTACCTGAAGGAGATGCGA 57.563 50.000 2.62 0.00 38.94 5.10
5919 8108 2.950781 TCTACCTGAAGGAGATGCGAT 58.049 47.619 2.62 0.00 38.94 4.58
5920 8109 2.887783 TCTACCTGAAGGAGATGCGATC 59.112 50.000 2.62 0.00 38.94 3.69
5955 8144 7.707464 TGGCTTAATTGTGAATGCATATGAAAG 59.293 33.333 6.97 0.00 0.00 2.62
5993 8182 3.378427 GCCTATTTCTCGGTTTGCATCTT 59.622 43.478 0.00 0.00 0.00 2.40
5994 8183 4.731773 GCCTATTTCTCGGTTTGCATCTTG 60.732 45.833 0.00 0.00 0.00 3.02
5995 8184 4.635765 CCTATTTCTCGGTTTGCATCTTGA 59.364 41.667 0.00 0.00 0.00 3.02
5996 8185 5.123820 CCTATTTCTCGGTTTGCATCTTGAA 59.876 40.000 0.00 0.00 0.00 2.69
5997 8186 3.896648 TTCTCGGTTTGCATCTTGAAC 57.103 42.857 0.00 0.00 0.00 3.18
5998 8187 2.844946 TCTCGGTTTGCATCTTGAACA 58.155 42.857 1.00 0.00 0.00 3.18
5999 8188 3.411446 TCTCGGTTTGCATCTTGAACAT 58.589 40.909 1.00 0.00 0.00 2.71
6000 8189 4.574892 TCTCGGTTTGCATCTTGAACATA 58.425 39.130 1.00 0.00 0.00 2.29
6001 8190 5.185454 TCTCGGTTTGCATCTTGAACATAT 58.815 37.500 1.00 0.00 0.00 1.78
6002 8191 5.294306 TCTCGGTTTGCATCTTGAACATATC 59.706 40.000 1.00 0.00 0.00 1.63
6003 8192 4.033932 TCGGTTTGCATCTTGAACATATCG 59.966 41.667 1.00 0.00 0.00 2.92
6004 8193 4.037690 GGTTTGCATCTTGAACATATCGC 58.962 43.478 1.00 0.00 0.00 4.58
6005 8194 4.201950 GGTTTGCATCTTGAACATATCGCT 60.202 41.667 1.00 0.00 0.00 4.93
6006 8195 5.007626 GGTTTGCATCTTGAACATATCGCTA 59.992 40.000 1.00 0.00 0.00 4.26
6007 8196 6.293626 GGTTTGCATCTTGAACATATCGCTAT 60.294 38.462 1.00 0.00 0.00 2.97
6008 8197 6.866010 TTGCATCTTGAACATATCGCTATT 57.134 33.333 0.00 0.00 0.00 1.73
6009 8198 6.471976 TGCATCTTGAACATATCGCTATTC 57.528 37.500 0.00 0.00 0.00 1.75
6010 8199 6.226052 TGCATCTTGAACATATCGCTATTCT 58.774 36.000 0.00 0.00 0.00 2.40
6011 8200 6.367149 TGCATCTTGAACATATCGCTATTCTC 59.633 38.462 0.00 0.00 0.00 2.87
6012 8201 6.183360 GCATCTTGAACATATCGCTATTCTCC 60.183 42.308 0.00 0.00 0.00 3.71
6013 8202 5.784177 TCTTGAACATATCGCTATTCTCCC 58.216 41.667 0.00 0.00 0.00 4.30
6014 8203 5.540337 TCTTGAACATATCGCTATTCTCCCT 59.460 40.000 0.00 0.00 0.00 4.20
6015 8204 5.392767 TGAACATATCGCTATTCTCCCTC 57.607 43.478 0.00 0.00 0.00 4.30
6016 8205 5.080337 TGAACATATCGCTATTCTCCCTCT 58.920 41.667 0.00 0.00 0.00 3.69
6026 8215 7.005296 TCGCTATTCTCCCTCTAAGAACTTAT 58.995 38.462 0.00 0.00 35.68 1.73
6029 8218 8.643324 GCTATTCTCCCTCTAAGAACTTATCAA 58.357 37.037 0.00 0.00 35.68 2.57
6055 8244 8.840833 TTTGTGTAGTGTTGCTATCTATCAAA 57.159 30.769 0.00 0.00 31.50 2.69
6060 8249 8.882736 TGTAGTGTTGCTATCTATCAAATGTTG 58.117 33.333 0.00 0.00 31.50 3.33
6091 8280 8.281531 TGGATGTGATATACCCAATTCTTTCTT 58.718 33.333 0.00 0.00 0.00 2.52
6108 8297 9.956640 ATTCTTTCTTGTCTATCTGAAACATCT 57.043 29.630 0.00 0.00 0.00 2.90
6129 8318 7.770433 ACATCTAGAGCAATGTAAAATGCACTA 59.230 33.333 0.00 0.00 44.95 2.74
6134 8323 8.147642 AGAGCAATGTAAAATGCACTAGTATC 57.852 34.615 0.00 0.00 44.95 2.24
6144 9141 2.224137 TGCACTAGTATCAGCATCTGCC 60.224 50.000 0.00 0.00 43.38 4.85
6149 9146 1.211212 AGTATCAGCATCTGCCAAGCA 59.789 47.619 0.00 0.00 43.38 3.91
6165 9162 5.927689 TGCCAAGCAAATAAAAATGAGAGTG 59.072 36.000 0.00 0.00 34.76 3.51
6166 9163 5.928264 GCCAAGCAAATAAAAATGAGAGTGT 59.072 36.000 0.00 0.00 0.00 3.55
6184 9181 4.245660 AGTGTCATTTCCGATACTGTGTG 58.754 43.478 0.00 0.00 36.17 3.82
6193 9190 4.212716 TCCGATACTGTGTGCTTAGGTAT 58.787 43.478 0.00 0.00 0.00 2.73
6194 9191 5.379187 TCCGATACTGTGTGCTTAGGTATA 58.621 41.667 0.00 0.00 0.00 1.47
6195 9192 6.008331 TCCGATACTGTGTGCTTAGGTATAT 58.992 40.000 0.00 0.00 0.00 0.86
6196 9193 7.170277 TCCGATACTGTGTGCTTAGGTATATA 58.830 38.462 0.00 0.00 0.00 0.86
6224 9222 8.798975 AATTCCTATGTCTACCAAGATCCTTA 57.201 34.615 0.00 0.00 33.30 2.69
6225 9223 7.598759 TTCCTATGTCTACCAAGATCCTTAC 57.401 40.000 0.00 0.00 33.30 2.34
6264 9262 4.189639 AGTCTGAGTAAACATCCGAACC 57.810 45.455 0.00 0.00 0.00 3.62
6312 9310 4.615901 TGCTATGCAGTGAACGGG 57.384 55.556 0.00 0.00 33.32 5.28
6336 9334 2.514824 GCAACCCCGGCTCATCTC 60.515 66.667 0.00 0.00 0.00 2.75
6429 9427 9.692325 ATCATAGAAAAAGAAGCCAAGTCTTAT 57.308 29.630 0.00 0.00 34.19 1.73
6501 9499 2.836372 TGCTGAGACTGTCCTTGATGAT 59.164 45.455 3.76 0.00 0.00 2.45
6504 9502 4.737352 GCTGAGACTGTCCTTGATGATCTC 60.737 50.000 3.76 0.00 33.30 2.75
6546 9544 1.933021 TTGGTGGTCTAGTGGATCGT 58.067 50.000 0.00 0.00 0.00 3.73
6573 9571 4.946157 AGATGGAAAGGCATAACACAGAAG 59.054 41.667 0.00 0.00 0.00 2.85
6656 9654 3.132111 TCAAGTTCTCAGGTGCGCATATA 59.868 43.478 15.91 0.00 0.00 0.86
6657 9655 4.060900 CAAGTTCTCAGGTGCGCATATAT 58.939 43.478 15.91 0.00 0.00 0.86
6743 9749 8.816640 ACTTTGTTGCCTCAATTGTTTATAAG 57.183 30.769 5.13 3.71 0.00 1.73
6744 9750 7.872483 ACTTTGTTGCCTCAATTGTTTATAAGG 59.128 33.333 5.13 4.83 0.00 2.69
6747 9753 3.964909 GCCTCAATTGTTTATAAGGCGG 58.035 45.455 15.44 0.83 39.84 6.13
6748 9754 3.380320 GCCTCAATTGTTTATAAGGCGGT 59.620 43.478 15.44 0.00 39.84 5.68
6749 9755 4.577283 GCCTCAATTGTTTATAAGGCGGTA 59.423 41.667 15.44 0.00 39.84 4.02
6750 9756 5.066764 GCCTCAATTGTTTATAAGGCGGTAA 59.933 40.000 15.44 0.00 39.84 2.85
6751 9757 6.725246 CCTCAATTGTTTATAAGGCGGTAAG 58.275 40.000 5.13 0.00 0.00 2.34
6752 9758 6.238648 CCTCAATTGTTTATAAGGCGGTAAGG 60.239 42.308 5.13 0.00 0.00 2.69
6761 9767 4.603946 GCGGTAAGGCGGCCTAGG 62.604 72.222 24.16 12.62 37.45 3.02
6762 9768 3.925090 CGGTAAGGCGGCCTAGGG 61.925 72.222 24.16 8.41 31.13 3.53
6772 9778 4.840005 GCCTAGGGCGAGCACCAC 62.840 72.222 11.72 0.00 39.62 4.16
6773 9779 4.162690 CCTAGGGCGAGCACCACC 62.163 72.222 0.00 0.00 0.00 4.61
6774 9780 4.162690 CTAGGGCGAGCACCACCC 62.163 72.222 0.00 0.00 44.62 4.61
6778 9784 4.459089 GGCGAGCACCACCCTCTC 62.459 72.222 0.00 0.00 0.00 3.20
6779 9785 3.386237 GCGAGCACCACCCTCTCT 61.386 66.667 0.00 0.00 0.00 3.10
6780 9786 2.052690 GCGAGCACCACCCTCTCTA 61.053 63.158 0.00 0.00 0.00 2.43
6781 9787 2.010582 GCGAGCACCACCCTCTCTAG 62.011 65.000 0.00 0.00 0.00 2.43
6782 9788 1.819905 GAGCACCACCCTCTCTAGC 59.180 63.158 0.00 0.00 0.00 3.42
6783 9789 2.010582 GAGCACCACCCTCTCTAGCG 62.011 65.000 0.00 0.00 0.00 4.26
6784 9790 2.496817 CACCACCCTCTCTAGCGC 59.503 66.667 0.00 0.00 0.00 5.92
6785 9791 2.760385 ACCACCCTCTCTAGCGCC 60.760 66.667 2.29 0.00 0.00 6.53
6786 9792 2.443016 CCACCCTCTCTAGCGCCT 60.443 66.667 2.29 0.00 0.00 5.52
6787 9793 1.152735 CCACCCTCTCTAGCGCCTA 60.153 63.158 2.29 0.00 0.00 3.93
6788 9794 0.755698 CCACCCTCTCTAGCGCCTAA 60.756 60.000 2.29 0.00 0.00 2.69
6789 9795 0.671251 CACCCTCTCTAGCGCCTAAG 59.329 60.000 2.29 0.00 0.00 2.18
6790 9796 0.468400 ACCCTCTCTAGCGCCTAAGG 60.468 60.000 2.29 4.23 0.00 2.69
6791 9797 1.663173 CCTCTCTAGCGCCTAAGGC 59.337 63.158 2.29 0.00 46.75 4.35
6803 9809 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
6804 9810 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
6805 9811 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
6806 9812 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
6807 9813 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
6808 9814 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
6809 9815 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
6810 9816 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
6811 9817 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
6812 9818 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
6813 9819 1.600413 GGCATATTTGTAAGGCGCTGC 60.600 52.381 7.64 4.69 0.00 5.25
6814 9820 1.334869 GCATATTTGTAAGGCGCTGCT 59.665 47.619 7.64 0.00 0.00 4.24
6815 9821 2.548057 GCATATTTGTAAGGCGCTGCTA 59.452 45.455 7.64 0.00 0.00 3.49
6816 9822 3.364366 GCATATTTGTAAGGCGCTGCTAG 60.364 47.826 7.64 0.00 0.00 3.42
6817 9823 1.668419 ATTTGTAAGGCGCTGCTAGG 58.332 50.000 7.64 0.00 0.00 3.02
6818 9824 0.392461 TTTGTAAGGCGCTGCTAGGG 60.392 55.000 7.64 0.00 0.00 3.53
6825 9831 4.221422 CGCTGCTAGGGCGCCTTA 62.221 66.667 28.56 23.18 45.83 2.69
6826 9832 2.427753 GCTGCTAGGGCGCCTTAT 59.572 61.111 28.56 15.39 42.25 1.73
6827 9833 1.669437 GCTGCTAGGGCGCCTTATC 60.669 63.158 28.56 19.66 42.25 1.75
6828 9834 1.748403 CTGCTAGGGCGCCTTATCA 59.252 57.895 28.56 23.35 42.25 2.15
6829 9835 0.601311 CTGCTAGGGCGCCTTATCAC 60.601 60.000 28.56 15.59 42.25 3.06
6830 9836 1.301795 GCTAGGGCGCCTTATCACC 60.302 63.158 28.56 7.55 34.61 4.02
6831 9837 1.759459 GCTAGGGCGCCTTATCACCT 61.759 60.000 28.56 15.44 34.61 4.00
6832 9838 1.629043 CTAGGGCGCCTTATCACCTA 58.371 55.000 28.56 15.77 34.61 3.08
6833 9839 1.968493 CTAGGGCGCCTTATCACCTAA 59.032 52.381 28.56 0.00 34.61 2.69
6834 9840 0.759346 AGGGCGCCTTATCACCTAAG 59.241 55.000 28.56 0.00 37.22 2.18
6835 9841 0.885150 GGGCGCCTTATCACCTAAGC 60.885 60.000 28.56 0.00 36.30 3.09
6836 9842 1.222115 GGCGCCTTATCACCTAAGCG 61.222 60.000 22.15 0.00 38.67 4.68
6837 9843 0.529992 GCGCCTTATCACCTAAGCGT 60.530 55.000 0.00 0.00 38.29 5.07
6838 9844 1.488527 CGCCTTATCACCTAAGCGTC 58.511 55.000 0.00 0.00 36.30 5.19
6839 9845 1.067212 CGCCTTATCACCTAAGCGTCT 59.933 52.381 0.00 0.00 36.30 4.18
6840 9846 2.292569 CGCCTTATCACCTAAGCGTCTA 59.707 50.000 0.00 0.00 36.30 2.59
6841 9847 3.609644 CGCCTTATCACCTAAGCGTCTAG 60.610 52.174 0.00 0.00 36.30 2.43
6842 9848 3.305471 GCCTTATCACCTAAGCGTCTAGG 60.305 52.174 9.63 9.63 43.70 3.02
6843 9849 3.256136 CCTTATCACCTAAGCGTCTAGGG 59.744 52.174 14.22 6.67 42.57 3.53
6844 9850 1.041437 ATCACCTAAGCGTCTAGGGC 58.959 55.000 14.22 0.00 42.57 5.19
6845 9851 0.323999 TCACCTAAGCGTCTAGGGCA 60.324 55.000 14.22 0.77 42.57 5.36
6846 9852 0.103208 CACCTAAGCGTCTAGGGCAG 59.897 60.000 14.22 3.23 42.57 4.85
6847 9853 1.043673 ACCTAAGCGTCTAGGGCAGG 61.044 60.000 14.22 9.47 42.57 4.85
6848 9854 0.755698 CCTAAGCGTCTAGGGCAGGA 60.756 60.000 8.98 0.00 35.67 3.86
6849 9855 0.386113 CTAAGCGTCTAGGGCAGGAC 59.614 60.000 8.98 0.00 0.00 3.85
6850 9856 0.323999 TAAGCGTCTAGGGCAGGACA 60.324 55.000 8.98 0.00 33.19 4.02
6851 9857 1.889530 AAGCGTCTAGGGCAGGACAC 61.890 60.000 8.98 0.00 33.19 3.67
6852 9858 2.893398 CGTCTAGGGCAGGACACC 59.107 66.667 0.00 0.00 33.19 4.16
6853 9859 1.682684 CGTCTAGGGCAGGACACCT 60.683 63.158 0.00 0.00 40.89 4.00
6854 9860 1.258445 CGTCTAGGGCAGGACACCTT 61.258 60.000 0.00 0.00 38.30 3.50
6855 9861 1.861982 GTCTAGGGCAGGACACCTTA 58.138 55.000 0.00 0.00 38.30 2.69
6856 9862 2.185387 GTCTAGGGCAGGACACCTTAA 58.815 52.381 0.00 0.00 38.30 1.85
6857 9863 2.570302 GTCTAGGGCAGGACACCTTAAA 59.430 50.000 0.00 0.00 38.30 1.52
6858 9864 3.008704 GTCTAGGGCAGGACACCTTAAAA 59.991 47.826 0.00 0.00 38.30 1.52
6859 9865 3.653836 TCTAGGGCAGGACACCTTAAAAA 59.346 43.478 0.00 0.00 38.30 1.94
6860 9866 2.594131 AGGGCAGGACACCTTAAAAAC 58.406 47.619 0.00 0.00 31.68 2.43
6861 9867 2.091555 AGGGCAGGACACCTTAAAAACA 60.092 45.455 0.00 0.00 31.68 2.83
6862 9868 2.696187 GGGCAGGACACCTTAAAAACAA 59.304 45.455 0.00 0.00 0.00 2.83
6864 9870 4.306600 GGCAGGACACCTTAAAAACAATG 58.693 43.478 0.00 0.00 0.00 2.82
6926 9932 4.445452 TCGAAATATACCTCGGGTATGC 57.555 45.455 19.83 9.63 46.91 3.14
6934 9940 1.443407 CTCGGGTATGCCTCTGTGG 59.557 63.158 0.00 0.00 39.35 4.17
6989 9995 9.727627 CTTCTTTCAAATAATATGGACAGCTTC 57.272 33.333 0.00 0.00 0.00 3.86
6992 9998 5.924356 TCAAATAATATGGACAGCTTCGGA 58.076 37.500 0.00 0.00 0.00 4.55
7002 10008 3.743396 GGACAGCTTCGGAATCATATCAC 59.257 47.826 0.00 0.00 0.00 3.06
7041 10047 9.181805 GTTAAAAGAACCTGAAGAGCATTTTAC 57.818 33.333 0.00 0.00 0.00 2.01
7070 10076 7.039270 GGGGAAATATACCACACATGTTTTTC 58.961 38.462 0.00 0.00 0.00 2.29
7115 10121 8.715191 TGTTTTCACATTTTAATGCAGAAACT 57.285 26.923 16.56 0.00 40.37 2.66
7121 10127 7.014134 TCACATTTTAATGCAGAAACTGGAGAA 59.986 33.333 14.69 0.00 40.04 2.87
7136 10142 9.952188 GAAACTGGAGAACCTTTATAATTATGC 57.048 33.333 8.28 0.00 37.04 3.14
7154 10160 8.424274 AATTATGCTGCTGCTTATTTTAAACC 57.576 30.769 17.00 0.00 40.48 3.27
7160 10166 6.569610 GCTGCTGCTTATTTTAAACCACTACA 60.570 38.462 8.53 0.00 36.03 2.74
7161 10167 6.908825 TGCTGCTTATTTTAAACCACTACAG 58.091 36.000 0.00 0.00 0.00 2.74
7173 10247 3.820557 ACCACTACAGCAAGTTGTCAAT 58.179 40.909 4.48 0.00 33.88 2.57
7182 10259 5.163530 ACAGCAAGTTGTCAATTGTTGATCA 60.164 36.000 20.48 0.00 42.47 2.92
7183 10260 5.924254 CAGCAAGTTGTCAATTGTTGATCAT 59.076 36.000 5.13 0.00 42.47 2.45
7184 10261 5.924254 AGCAAGTTGTCAATTGTTGATCATG 59.076 36.000 5.13 0.00 42.47 3.07
7185 10262 5.693104 GCAAGTTGTCAATTGTTGATCATGT 59.307 36.000 5.13 0.00 42.47 3.21
7186 10263 6.862608 GCAAGTTGTCAATTGTTGATCATGTA 59.137 34.615 5.13 0.00 42.47 2.29
7187 10264 7.061441 GCAAGTTGTCAATTGTTGATCATGTAG 59.939 37.037 5.13 0.00 42.47 2.74
7231 10308 6.812160 GTGTTCGAGAATGTATTAGTCTTGGT 59.188 38.462 0.00 0.00 35.93 3.67
7236 10313 8.092068 TCGAGAATGTATTAGTCTTGGTTTTGA 58.908 33.333 0.00 0.00 35.93 2.69
7237 10314 8.883731 CGAGAATGTATTAGTCTTGGTTTTGAT 58.116 33.333 0.00 0.00 33.08 2.57
7242 10319 6.657541 TGTATTAGTCTTGGTTTTGATGGACC 59.342 38.462 0.00 0.00 36.45 4.46
7253 10330 0.907486 TGATGGACCTTGGAGAGCTG 59.093 55.000 0.00 0.00 0.00 4.24
7268 10345 7.575414 TGGAGAGCTGTACTAAGAATCTAAG 57.425 40.000 0.00 0.00 0.00 2.18
7289 10366 6.922247 AAGATTATTGACTCTCTGTGCATG 57.078 37.500 0.00 0.00 0.00 4.06
7431 10508 3.958147 TGGAGCAGCAAATGATGATGATT 59.042 39.130 2.32 0.00 45.42 2.57
7439 10516 5.299531 AGCAAATGATGATGATTCACCTGAG 59.700 40.000 0.00 0.00 33.85 3.35
7681 10758 3.123804 GTGCCGACGACTGAAATATGAT 58.876 45.455 0.00 0.00 0.00 2.45
7914 10996 8.231692 TCTTGGAATTCAGAAAACACATGTAA 57.768 30.769 7.93 0.00 0.00 2.41
7936 11018 6.892658 AATTTTGTAGACAACACAGGCATA 57.107 33.333 0.00 0.00 38.00 3.14
7972 11054 4.222124 ACACAGATATCACCCAAACTCC 57.778 45.455 5.32 0.00 0.00 3.85
7994 11076 1.673033 GCGTGCCTACAGACAGATTGT 60.673 52.381 0.00 0.00 0.00 2.71
8010 11092 0.526662 TTGTTGCGTTCGTTTGGGTT 59.473 45.000 0.00 0.00 0.00 4.11
8017 11099 1.600013 CGTTCGTTTGGGTTCACATGA 59.400 47.619 0.00 0.00 0.00 3.07
8018 11100 2.032302 CGTTCGTTTGGGTTCACATGAA 59.968 45.455 0.00 0.00 0.00 2.57
8045 11127 4.512484 CCAAACAGAAACCATGGTTTTGT 58.488 39.130 36.86 33.48 46.80 2.83
8069 11151 1.304217 ACGGACAGGAGACGGACAT 60.304 57.895 0.00 0.00 0.00 3.06
8108 11190 2.111043 ACACGTCAGCCACCCAAG 59.889 61.111 0.00 0.00 0.00 3.61
8144 11226 1.438651 TCTAAATGCCACGAGTGTGC 58.561 50.000 2.36 6.19 45.04 4.57
8146 11228 1.295357 TAAATGCCACGAGTGTGCGG 61.295 55.000 2.36 0.00 45.04 5.69
8176 11259 0.976073 ACCCATCCGTACCACTCTGG 60.976 60.000 0.00 0.00 45.02 3.86
8241 11324 0.310543 GCGCAATGTTGTGGAAGTGA 59.689 50.000 0.30 0.00 39.02 3.41
8249 11332 2.671963 GTGGAAGTGAACCCCGGC 60.672 66.667 0.00 0.00 0.00 6.13
8279 11362 2.043852 GAGGCCGACTCCTCCTCA 60.044 66.667 0.00 0.00 45.40 3.86
8285 11368 2.043852 GACTCCTCCTCAGGGCGA 60.044 66.667 0.00 0.00 40.80 5.54
8286 11369 1.456705 GACTCCTCCTCAGGGCGAT 60.457 63.158 0.00 0.00 40.80 4.58
8315 11398 0.528901 CACCTTTCACCGTGACGTCA 60.529 55.000 15.76 15.76 31.36 4.35
8329 11412 4.643387 GTCAACGGGGGCTGCACT 62.643 66.667 0.21 0.00 0.00 4.40
8330 11413 4.329545 TCAACGGGGGCTGCACTC 62.330 66.667 0.21 0.00 0.00 3.51
8370 11453 1.067142 ACGCATGTATGTTCCAGTCGT 60.067 47.619 0.00 0.00 0.00 4.34
8375 11458 0.989890 GTATGTTCCAGTCGTGACGC 59.010 55.000 0.00 0.00 36.20 5.19
8395 11478 0.614979 GTCAGAGGTACTGGGAGGCA 60.615 60.000 0.00 0.00 45.76 4.75
8462 11547 3.663025 CATTTGAGCCCGAAATGGTTTT 58.337 40.909 0.00 0.00 37.22 2.43
8536 11626 1.145945 TCTACTGCCCGATGATCTCCT 59.854 52.381 0.00 0.00 0.00 3.69
8548 11638 0.658897 GATCTCCTCCACGACTCGAC 59.341 60.000 5.20 0.00 0.00 4.20
8549 11639 1.090625 ATCTCCTCCACGACTCGACG 61.091 60.000 5.20 0.00 39.31 5.12
8551 11641 1.575576 CTCCTCCACGACTCGACGTT 61.576 60.000 5.20 0.00 44.76 3.99
8552 11642 1.168407 TCCTCCACGACTCGACGTTT 61.168 55.000 5.20 0.00 44.76 3.60
8553 11643 1.002250 CCTCCACGACTCGACGTTTG 61.002 60.000 5.20 0.00 44.76 2.93
8554 11644 1.606350 CTCCACGACTCGACGTTTGC 61.606 60.000 5.20 0.00 44.76 3.68
8555 11645 2.654912 CCACGACTCGACGTTTGCC 61.655 63.158 5.20 0.00 44.76 4.52
8556 11646 2.728383 ACGACTCGACGTTTGCCG 60.728 61.111 5.20 0.00 44.14 5.69
8557 11647 2.427905 CGACTCGACGTTTGCCGA 60.428 61.111 0.00 0.00 40.70 5.54
8560 11650 2.257371 CTCGACGTTTGCCGAGGA 59.743 61.111 14.62 0.00 45.93 3.71
8561 11651 2.049802 TCGACGTTTGCCGAGGAC 60.050 61.111 0.00 0.00 40.70 3.85
8562 11652 2.049433 CGACGTTTGCCGAGGACT 60.049 61.111 0.00 0.00 40.70 3.85
8563 11653 1.663702 CGACGTTTGCCGAGGACTT 60.664 57.895 0.00 0.00 40.70 3.01
8564 11654 1.615107 CGACGTTTGCCGAGGACTTC 61.615 60.000 0.00 0.00 40.70 3.01
8565 11655 1.289800 GACGTTTGCCGAGGACTTCC 61.290 60.000 0.00 0.00 40.70 3.46
8566 11656 2.380410 CGTTTGCCGAGGACTTCCG 61.380 63.158 0.00 0.00 42.08 4.30
8567 11657 2.358247 TTTGCCGAGGACTTCCGC 60.358 61.111 0.00 0.00 42.08 5.54
8568 11658 3.894547 TTTGCCGAGGACTTCCGCC 62.895 63.158 0.00 0.00 42.08 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 0.606130 TGTCACCACATTGCAGCGAT 60.606 50.000 0.00 0.00 0.00 4.58
302 303 2.283173 TCCAGAGCCTGCGACTCA 60.283 61.111 3.64 0.00 36.58 3.41
456 457 2.270986 GCAGAAACAGTGGCCCCAG 61.271 63.158 0.00 0.00 0.00 4.45
461 462 1.900498 AGCCTGCAGAAACAGTGGC 60.900 57.895 17.39 8.43 35.83 5.01
464 465 0.536006 GGACAGCCTGCAGAAACAGT 60.536 55.000 17.39 7.20 35.83 3.55
465 466 0.250640 AGGACAGCCTGCAGAAACAG 60.251 55.000 17.39 3.73 44.90 3.16
488 489 0.177836 TGATCACCACTATGGCCACG 59.822 55.000 8.16 4.61 42.67 4.94
503 504 0.600255 CGTAGACCGGGGCATTGATC 60.600 60.000 6.32 0.00 0.00 2.92
552 553 0.733150 GTGACGAAATAAGGCAGGCC 59.267 55.000 0.97 0.97 0.00 5.19
633 634 2.223272 TGTCTGTCTATCGTCATCACGC 60.223 50.000 0.00 0.00 46.28 5.34
640 641 4.742167 CCACATTCATGTCTGTCTATCGTC 59.258 45.833 0.00 0.00 39.39 4.20
718 720 1.985473 AACATGCAAGTTCAGAGCCA 58.015 45.000 0.51 0.00 0.00 4.75
731 733 1.532505 CGCAGCTGTCCAATAACATGC 60.533 52.381 16.64 0.00 33.72 4.06
820 1954 4.141390 ACCACCAGATGATAGGGCTAAAAG 60.141 45.833 0.00 0.00 0.00 2.27
841 1978 1.598701 GGAATCTGCCCTGCACAACC 61.599 60.000 0.00 0.00 33.79 3.77
856 1993 1.451387 GCCCCGTTCGATGTGGAAT 60.451 57.895 0.00 0.00 0.00 3.01
944 2081 1.897398 CTCAGGTGCGTGCGTAAACC 61.897 60.000 5.52 5.52 0.00 3.27
1064 2203 6.843069 TGATGTAATTATGTGATGGTCGTG 57.157 37.500 0.00 0.00 0.00 4.35
1071 2210 8.893219 AGACGATGTTGATGTAATTATGTGAT 57.107 30.769 0.00 0.00 0.00 3.06
1074 2213 8.893219 ATGAGACGATGTTGATGTAATTATGT 57.107 30.769 0.00 0.00 0.00 2.29
1233 2378 3.198200 GGATGATGATGATGAGGAGGAGG 59.802 52.174 0.00 0.00 0.00 4.30
1234 2379 4.098155 AGGATGATGATGATGAGGAGGAG 58.902 47.826 0.00 0.00 0.00 3.69
1235 2380 4.095211 GAGGATGATGATGATGAGGAGGA 58.905 47.826 0.00 0.00 0.00 3.71
1238 2383 3.504375 ACGAGGATGATGATGATGAGGA 58.496 45.455 0.00 0.00 0.00 3.71
1243 2388 3.446873 GCTAGGACGAGGATGATGATGAT 59.553 47.826 0.00 0.00 0.00 2.45
1358 2516 8.147704 TCTTCTTCTTCTTCTTCTTCTTCTTCC 58.852 37.037 0.00 0.00 0.00 3.46
1377 2535 4.924462 CACCTCGGTACTCTTTTCTTCTTC 59.076 45.833 0.00 0.00 0.00 2.87
1379 2537 3.896272 ACACCTCGGTACTCTTTTCTTCT 59.104 43.478 0.00 0.00 0.00 2.85
1380 2538 4.254402 ACACCTCGGTACTCTTTTCTTC 57.746 45.455 0.00 0.00 0.00 2.87
1381 2539 4.377897 CAACACCTCGGTACTCTTTTCTT 58.622 43.478 0.00 0.00 0.00 2.52
1382 2540 3.244112 CCAACACCTCGGTACTCTTTTCT 60.244 47.826 0.00 0.00 0.00 2.52
1383 2541 3.064931 CCAACACCTCGGTACTCTTTTC 58.935 50.000 0.00 0.00 0.00 2.29
1384 2542 2.224450 CCCAACACCTCGGTACTCTTTT 60.224 50.000 0.00 0.00 0.00 2.27
1385 2543 1.346722 CCCAACACCTCGGTACTCTTT 59.653 52.381 0.00 0.00 0.00 2.52
1386 2544 0.974383 CCCAACACCTCGGTACTCTT 59.026 55.000 0.00 0.00 0.00 2.85
1387 2545 1.542187 GCCCAACACCTCGGTACTCT 61.542 60.000 0.00 0.00 0.00 3.24
1388 2546 1.079336 GCCCAACACCTCGGTACTC 60.079 63.158 0.00 0.00 0.00 2.59
1389 2547 2.590114 GGCCCAACACCTCGGTACT 61.590 63.158 0.00 0.00 0.00 2.73
1611 2769 6.289834 TGATGCATTGAAACAAGAAAATGGT 58.710 32.000 0.00 0.00 31.97 3.55
1640 2801 6.898451 TTAATGTCGTCGCAAACAAATAAC 57.102 33.333 0.00 0.00 0.00 1.89
1776 2941 2.351276 GCCACCCCGTCAAGACAT 59.649 61.111 0.72 0.00 0.00 3.06
1777 2942 4.308458 CGCCACCCCGTCAAGACA 62.308 66.667 0.72 0.00 0.00 3.41
1839 3004 2.549754 CCGAAGCGCTTCATATCCATTT 59.450 45.455 40.22 10.29 39.46 2.32
1983 3163 5.812127 GCTGGGAAATGTGCTTAATTTTAGG 59.188 40.000 0.00 0.00 0.00 2.69
2101 3282 2.296945 TTTGACAGCACTTGGCCCCT 62.297 55.000 0.00 0.00 46.50 4.79
2182 3366 6.601332 TCCTAATTTTACTTATGAGCAGGGG 58.399 40.000 0.00 0.00 0.00 4.79
2188 3372 8.207545 AGGACTGCTCCTAATTTTACTTATGAG 58.792 37.037 0.00 0.00 46.16 2.90
2205 3395 2.993853 CCCCCTCAAGGACTGCTC 59.006 66.667 0.00 0.00 38.24 4.26
2210 3400 2.361737 GCAAGCCCCCTCAAGGAC 60.362 66.667 0.00 0.00 38.24 3.85
2266 3461 2.283966 AGGACGCAGCTACCAGGT 60.284 61.111 0.00 0.00 0.00 4.00
2289 3484 0.251653 TCGACTCCACCACCTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
2290 3485 0.033011 ATCGACTCCACCACCTAGCT 60.033 55.000 0.00 0.00 0.00 3.32
2429 3624 4.208686 CACCTCCTACGCCTCGCC 62.209 72.222 0.00 0.00 0.00 5.54
2448 3643 1.519455 GTGCTTCCTCATCCGTCCG 60.519 63.158 0.00 0.00 0.00 4.79
2459 3654 0.390998 GACTCAGGCTCAGTGCTTCC 60.391 60.000 0.00 0.00 42.39 3.46
2477 3672 4.379143 CTGTCGCGTCGTCACCGA 62.379 66.667 5.77 0.00 41.73 4.69
2491 3686 1.202639 TCACAACAATCGCTCCACTGT 60.203 47.619 0.00 0.00 0.00 3.55
2493 3688 1.609061 CCTCACAACAATCGCTCCACT 60.609 52.381 0.00 0.00 0.00 4.00
2501 3696 3.064207 TCAACTACGCCTCACAACAATC 58.936 45.455 0.00 0.00 0.00 2.67
2504 3699 2.412870 CATCAACTACGCCTCACAACA 58.587 47.619 0.00 0.00 0.00 3.33
2519 3714 2.966732 GCCCTCCGTCCACCATCAA 61.967 63.158 0.00 0.00 0.00 2.57
2576 3771 1.141053 AGTTTCGTCCTTGCCTTCACT 59.859 47.619 0.00 0.00 0.00 3.41
2653 3890 1.228521 CCACCCATTGCCAGTGTCA 60.229 57.895 0.00 0.00 0.00 3.58
2659 3896 3.188903 TCCCACCACCCATTGCCA 61.189 61.111 0.00 0.00 0.00 4.92
2663 3900 2.933287 TCGCTCCCACCACCCATT 60.933 61.111 0.00 0.00 0.00 3.16
2679 3916 1.766143 CGGCATCAGCTAAACCGCTC 61.766 60.000 4.04 0.00 38.41 5.03
2752 3994 4.093556 CGTCACCTTCTTCCTCTTTATTGC 59.906 45.833 0.00 0.00 0.00 3.56
2756 3998 2.565834 CCCGTCACCTTCTTCCTCTTTA 59.434 50.000 0.00 0.00 0.00 1.85
2759 4001 0.905337 CCCCGTCACCTTCTTCCTCT 60.905 60.000 0.00 0.00 0.00 3.69
2760 4002 0.903454 TCCCCGTCACCTTCTTCCTC 60.903 60.000 0.00 0.00 0.00 3.71
2803 4045 2.269940 AGAGGAGGTAACATGTGCCTT 58.730 47.619 19.45 8.20 41.41 4.35
2808 4050 3.069729 GCGGAATAGAGGAGGTAACATGT 59.930 47.826 0.00 0.00 41.41 3.21
2811 4053 1.679680 CGCGGAATAGAGGAGGTAACA 59.320 52.381 0.00 0.00 41.41 2.41
2931 4174 2.358582 TGACACAAAGCCATGTCTTGTG 59.641 45.455 21.22 21.22 44.59 3.33
3066 4310 1.200948 GTGACTTTGCAGCATTCCTCC 59.799 52.381 0.00 0.00 0.00 4.30
3155 4400 5.181748 GTTGGTGTAGATCTCAGAAGCAAT 58.818 41.667 0.00 0.00 0.00 3.56
3160 4405 7.482169 ACTATTGTTGGTGTAGATCTCAGAA 57.518 36.000 0.00 0.00 0.00 3.02
3165 4410 8.691661 ACAAAAACTATTGTTGGTGTAGATCT 57.308 30.769 0.00 0.00 40.52 2.75
3180 4425 4.677584 TGAAAGTGCGCAACAAAAACTAT 58.322 34.783 14.00 0.00 0.00 2.12
3190 4435 0.874390 GTGAGGATGAAAGTGCGCAA 59.126 50.000 14.00 0.00 0.00 4.85
3219 4468 1.473278 GGTCGACCGAGAAGTTGATCT 59.527 52.381 20.85 0.00 32.78 2.75
3220 4469 1.201647 TGGTCGACCGAGAAGTTGATC 59.798 52.381 28.70 1.37 39.43 2.92
3255 4504 2.038387 AAGCGTGTTTGACTTGGAGT 57.962 45.000 0.00 0.00 0.00 3.85
3338 4754 2.894126 TGACTCACTGTCTTCTTCCTCC 59.106 50.000 0.00 0.00 45.54 4.30
3352 4768 1.880027 ACTTTTGGCCGAATGACTCAC 59.120 47.619 22.31 0.00 0.00 3.51
3389 4805 7.237055 AGTTACCAAACTACTCCCTCTGTAAAT 59.763 37.037 0.00 0.00 44.26 1.40
3399 4815 6.046290 ACATACCAGTTACCAAACTACTCC 57.954 41.667 0.00 0.00 44.28 3.85
3406 4822 3.158676 GGCCAACATACCAGTTACCAAA 58.841 45.455 0.00 0.00 30.96 3.28
3427 4847 2.669434 CGAACCAACATACCAACGTAGG 59.331 50.000 0.00 0.00 32.46 3.18
3448 4875 3.442100 CCTCCCGAAACGACATAACTAC 58.558 50.000 0.00 0.00 0.00 2.73
3480 4907 3.002042 CACGAATTCAGAAGCTATGGCAG 59.998 47.826 3.10 0.00 41.70 4.85
3484 4911 3.243877 CCGACACGAATTCAGAAGCTATG 59.756 47.826 6.22 0.00 0.00 2.23
3500 4935 3.192001 TCCATGTGTAGACTTACCGACAC 59.808 47.826 0.00 0.00 42.04 3.67
3573 5492 4.811024 GCATTTCCACTATTCTCGTGATGA 59.189 41.667 0.00 0.00 34.35 2.92
3656 5588 1.831736 CCAATCGGTAGGAGGTCTGTT 59.168 52.381 0.00 0.00 0.00 3.16
3662 5594 2.122783 TTTTGCCAATCGGTAGGAGG 57.877 50.000 0.00 0.00 33.28 4.30
3663 5595 2.223572 GCATTTTGCCAATCGGTAGGAG 60.224 50.000 0.00 0.00 37.42 3.69
3664 5596 1.748493 GCATTTTGCCAATCGGTAGGA 59.252 47.619 0.00 0.00 37.42 2.94
3666 5598 2.529151 GTGCATTTTGCCAATCGGTAG 58.471 47.619 0.00 0.00 44.23 3.18
3668 5600 0.037419 GGTGCATTTTGCCAATCGGT 60.037 50.000 0.00 0.00 44.23 4.69
3669 5601 1.077645 CGGTGCATTTTGCCAATCGG 61.078 55.000 0.00 0.00 44.23 4.18
3736 5668 3.245754 GTGTTGTCGATGTTCGTTTACCA 59.754 43.478 0.00 0.00 41.35 3.25
3750 5682 2.399396 AATTTCGCCTTGTGTTGTCG 57.601 45.000 0.00 0.00 0.00 4.35
3751 5683 4.857037 GGATAAATTTCGCCTTGTGTTGTC 59.143 41.667 0.00 0.00 0.00 3.18
3752 5684 4.279671 TGGATAAATTTCGCCTTGTGTTGT 59.720 37.500 0.00 0.00 0.00 3.32
3753 5685 4.804108 TGGATAAATTTCGCCTTGTGTTG 58.196 39.130 0.00 0.00 0.00 3.33
3754 5686 5.659440 ATGGATAAATTTCGCCTTGTGTT 57.341 34.783 0.00 0.00 0.00 3.32
3755 5687 5.659440 AATGGATAAATTTCGCCTTGTGT 57.341 34.783 0.00 0.00 0.00 3.72
3850 5789 4.902448 AGGTAATGGTAGAGAGGAACATCC 59.098 45.833 0.00 0.00 36.58 3.51
3861 5834 9.742144 GTCTTGAGATCTATAGGTAATGGTAGA 57.258 37.037 0.00 0.00 0.00 2.59
3897 5870 3.118738 GGTCTGTTTCATCGATGTAGGGT 60.119 47.826 24.09 0.00 0.00 4.34
3905 5878 4.669318 GATCGTTAGGTCTGTTTCATCGA 58.331 43.478 0.00 0.00 0.00 3.59
3912 5885 3.004524 GGCTATCGATCGTTAGGTCTGTT 59.995 47.826 26.45 2.26 0.00 3.16
3935 5908 7.393234 TGGAACTTGGAAGAGGTTATTAATGTG 59.607 37.037 0.00 0.00 0.00 3.21
3943 5916 6.328148 TCTTACTTGGAACTTGGAAGAGGTTA 59.672 38.462 0.00 0.00 30.67 2.85
3944 5917 3.953542 ACTTGGAACTTGGAAGAGGTT 57.046 42.857 0.00 0.00 0.00 3.50
3945 5918 4.658901 TCTTACTTGGAACTTGGAAGAGGT 59.341 41.667 0.00 0.00 30.67 3.85
3947 5920 6.370166 GTGATCTTACTTGGAACTTGGAAGAG 59.630 42.308 0.00 0.00 35.54 2.85
3948 5921 6.231211 GTGATCTTACTTGGAACTTGGAAGA 58.769 40.000 0.00 0.00 36.21 2.87
3949 5922 5.120830 CGTGATCTTACTTGGAACTTGGAAG 59.879 44.000 0.00 0.00 0.00 3.46
3950 5923 4.994852 CGTGATCTTACTTGGAACTTGGAA 59.005 41.667 0.00 0.00 0.00 3.53
3951 5924 4.566004 CGTGATCTTACTTGGAACTTGGA 58.434 43.478 0.00 0.00 0.00 3.53
3952 5925 3.125316 GCGTGATCTTACTTGGAACTTGG 59.875 47.826 0.00 0.00 0.00 3.61
3953 5926 3.125316 GGCGTGATCTTACTTGGAACTTG 59.875 47.826 0.00 0.00 0.00 3.16
3954 5927 3.244422 TGGCGTGATCTTACTTGGAACTT 60.244 43.478 0.00 0.00 0.00 2.66
3955 5928 2.301870 TGGCGTGATCTTACTTGGAACT 59.698 45.455 0.00 0.00 0.00 3.01
3956 5929 2.695359 TGGCGTGATCTTACTTGGAAC 58.305 47.619 0.00 0.00 0.00 3.62
4011 5984 2.049063 GCGCTCTCCACTGTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
4012 5985 4.057428 GGCGCTCTCCACTGTCGT 62.057 66.667 7.64 0.00 0.00 4.34
4013 5986 4.803426 GGGCGCTCTCCACTGTCG 62.803 72.222 7.64 0.00 0.00 4.35
4235 6214 2.106938 GGATGATCGCCAGCGTCA 59.893 61.111 12.32 14.43 40.74 4.35
4462 6441 1.201825 GTGCGCGTCTCACTTTGAC 59.798 57.895 8.43 0.00 0.00 3.18
4463 6442 1.954146 GGTGCGCGTCTCACTTTGA 60.954 57.895 8.43 0.00 34.97 2.69
4473 6452 1.069500 GTTGATTAGTTTGGTGCGCGT 60.069 47.619 8.43 0.00 0.00 6.01
4478 6457 5.476599 TCATTCCTGGTTGATTAGTTTGGTG 59.523 40.000 0.00 0.00 0.00 4.17
4496 6488 5.113383 TGATCATTGCAAAGCATTCATTCC 58.887 37.500 1.71 0.00 38.76 3.01
4504 6496 4.617530 GCTCTTCTTGATCATTGCAAAGCA 60.618 41.667 1.71 0.00 36.47 3.91
4512 6504 4.818546 CCCATAACGCTCTTCTTGATCATT 59.181 41.667 0.00 0.00 0.00 2.57
4515 6507 3.134458 CCCCATAACGCTCTTCTTGATC 58.866 50.000 0.00 0.00 0.00 2.92
4529 6521 2.224523 GCATCCAGATCGAACCCCATAA 60.225 50.000 0.00 0.00 0.00 1.90
4685 6692 2.103538 GTATCGCCGGCTTCGTCA 59.896 61.111 26.68 0.83 0.00 4.35
4700 6707 2.203308 CTCCTAGCGGCCTCGGTA 60.203 66.667 0.00 0.00 45.89 4.02
4773 6783 1.069358 GCCCTTACTGATCCTTCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
5029 7040 5.824904 AAATACGTCTTCTAACGAGGCTA 57.175 39.130 3.16 0.00 45.37 3.93
5041 7052 7.362662 TGACGTACTTTCAGTAAATACGTCTT 58.637 34.615 24.74 0.45 46.17 3.01
5044 7055 6.086765 CGTTGACGTACTTTCAGTAAATACGT 59.913 38.462 6.19 6.19 41.91 3.57
5052 7063 2.391879 GCTCGTTGACGTACTTTCAGT 58.608 47.619 3.25 0.00 40.80 3.41
5236 7262 0.732880 GCGCTCTTAGACAACTGCGA 60.733 55.000 15.21 0.00 45.15 5.10
5242 7268 2.228103 TCTTCTTCGCGCTCTTAGACAA 59.772 45.455 5.56 0.00 0.00 3.18
5436 7462 2.920912 TTTCCCACCCGCTCGAGT 60.921 61.111 15.13 0.00 0.00 4.18
5628 7654 5.649395 TGTTAGTACTACTTACGGTGAGCAT 59.351 40.000 0.91 0.00 35.61 3.79
5636 7662 9.946165 TGATCATCAATGTTAGTACTACTTACG 57.054 33.333 0.91 0.00 35.61 3.18
5642 7668 9.634021 AGTCTCTGATCATCAATGTTAGTACTA 57.366 33.333 0.00 0.00 0.00 1.82
5643 7669 8.532186 AGTCTCTGATCATCAATGTTAGTACT 57.468 34.615 0.00 0.00 0.00 2.73
5644 7670 8.409371 TGAGTCTCTGATCATCAATGTTAGTAC 58.591 37.037 0.00 0.00 0.00 2.73
5645 7671 8.525290 TGAGTCTCTGATCATCAATGTTAGTA 57.475 34.615 0.00 0.00 0.00 1.82
5646 7672 7.415592 TGAGTCTCTGATCATCAATGTTAGT 57.584 36.000 0.00 0.00 0.00 2.24
5647 7673 9.628746 CTATGAGTCTCTGATCATCAATGTTAG 57.371 37.037 0.00 0.00 37.36 2.34
5677 7703 3.181477 CGCATAATCCCCTTTCAATTGCA 60.181 43.478 0.00 0.00 0.00 4.08
5679 7705 4.916983 TCGCATAATCCCCTTTCAATTG 57.083 40.909 0.00 0.00 0.00 2.32
5741 7767 2.584835 TTACAGCAACAAGGCCAGAT 57.415 45.000 5.01 0.00 0.00 2.90
5765 7791 6.360370 AATCTAACTAGCACTTCCAGTTCA 57.640 37.500 0.00 0.00 34.48 3.18
5821 8010 4.894784 ACAACGAAGGAGCTTATCTGAAA 58.105 39.130 0.00 0.00 0.00 2.69
5885 8074 8.836144 TCCTTCAGGTAGATGTAATCATCCCAC 61.836 44.444 4.84 4.09 42.36 4.61
5886 8075 6.870646 TCCTTCAGGTAGATGTAATCATCCCA 60.871 42.308 4.84 0.00 42.36 4.37
5887 8076 5.544176 TCCTTCAGGTAGATGTAATCATCCC 59.456 44.000 4.84 1.28 42.36 3.85
5888 8077 6.495181 TCTCCTTCAGGTAGATGTAATCATCC 59.505 42.308 4.84 0.00 42.36 3.51
5889 8078 7.531857 TCTCCTTCAGGTAGATGTAATCATC 57.468 40.000 0.58 0.58 40.46 2.92
5890 8079 7.526860 GCATCTCCTTCAGGTAGATGTAATCAT 60.527 40.741 22.83 0.00 43.65 2.45
5891 8080 6.239430 GCATCTCCTTCAGGTAGATGTAATCA 60.239 42.308 22.83 0.00 43.65 2.57
5892 8081 6.162777 GCATCTCCTTCAGGTAGATGTAATC 58.837 44.000 22.83 11.80 43.65 1.75
5893 8082 5.279206 CGCATCTCCTTCAGGTAGATGTAAT 60.279 44.000 22.83 1.25 43.65 1.89
5894 8083 4.038042 CGCATCTCCTTCAGGTAGATGTAA 59.962 45.833 22.83 0.00 43.65 2.41
5895 8084 3.570125 CGCATCTCCTTCAGGTAGATGTA 59.430 47.826 22.83 0.00 43.65 2.29
5896 8085 2.363680 CGCATCTCCTTCAGGTAGATGT 59.636 50.000 22.83 2.23 43.65 3.06
5897 8086 2.625314 TCGCATCTCCTTCAGGTAGATG 59.375 50.000 20.33 20.33 44.06 2.90
5898 8087 2.950781 TCGCATCTCCTTCAGGTAGAT 58.049 47.619 0.00 0.00 34.58 1.98
5899 8088 2.437085 TCGCATCTCCTTCAGGTAGA 57.563 50.000 0.00 0.00 36.34 2.59
5900 8089 2.890311 AGATCGCATCTCCTTCAGGTAG 59.110 50.000 0.00 0.00 33.42 3.18
5901 8090 2.950781 AGATCGCATCTCCTTCAGGTA 58.049 47.619 0.00 0.00 33.42 3.08
5902 8091 1.786937 AGATCGCATCTCCTTCAGGT 58.213 50.000 0.00 0.00 33.42 4.00
5903 8092 2.906691 AAGATCGCATCTCCTTCAGG 57.093 50.000 0.08 0.00 39.08 3.86
5904 8093 8.441608 CAATTATTAAGATCGCATCTCCTTCAG 58.558 37.037 0.08 0.00 39.08 3.02
5905 8094 7.388776 CCAATTATTAAGATCGCATCTCCTTCA 59.611 37.037 0.08 0.00 39.08 3.02
5906 8095 7.625185 GCCAATTATTAAGATCGCATCTCCTTC 60.625 40.741 0.08 0.00 39.08 3.46
5907 8096 6.150140 GCCAATTATTAAGATCGCATCTCCTT 59.850 38.462 0.08 0.00 39.08 3.36
5908 8097 5.645497 GCCAATTATTAAGATCGCATCTCCT 59.355 40.000 0.08 0.00 39.08 3.69
5909 8098 5.645497 AGCCAATTATTAAGATCGCATCTCC 59.355 40.000 0.08 0.00 39.08 3.71
5910 8099 6.734104 AGCCAATTATTAAGATCGCATCTC 57.266 37.500 0.08 0.00 39.08 2.75
5911 8100 8.621532 TTAAGCCAATTATTAAGATCGCATCT 57.378 30.769 0.00 0.00 42.61 2.90
5912 8101 9.846248 AATTAAGCCAATTATTAAGATCGCATC 57.154 29.630 0.00 0.00 34.99 3.91
5913 8102 9.630098 CAATTAAGCCAATTATTAAGATCGCAT 57.370 29.630 0.00 0.00 34.99 4.73
5914 8103 8.629158 ACAATTAAGCCAATTATTAAGATCGCA 58.371 29.630 0.00 0.00 34.99 5.10
5915 8104 8.905702 CACAATTAAGCCAATTATTAAGATCGC 58.094 33.333 0.00 0.00 34.99 4.58
5955 8144 1.027357 AGGCCATGTCGCAAATGATC 58.973 50.000 5.01 0.00 0.00 2.92
5958 8147 3.067180 AGAAATAGGCCATGTCGCAAATG 59.933 43.478 5.01 0.00 0.00 2.32
5964 8153 1.202533 ACCGAGAAATAGGCCATGTCG 60.203 52.381 5.01 7.95 0.00 4.35
5993 8182 5.080337 AGAGGGAGAATAGCGATATGTTCA 58.920 41.667 0.00 0.00 0.00 3.18
5994 8183 5.652994 AGAGGGAGAATAGCGATATGTTC 57.347 43.478 0.00 0.00 0.00 3.18
5995 8184 6.948886 TCTTAGAGGGAGAATAGCGATATGTT 59.051 38.462 0.00 0.00 0.00 2.71
5996 8185 6.486056 TCTTAGAGGGAGAATAGCGATATGT 58.514 40.000 0.00 0.00 0.00 2.29
5997 8186 7.122055 AGTTCTTAGAGGGAGAATAGCGATATG 59.878 40.741 0.00 0.00 35.74 1.78
5998 8187 7.179269 AGTTCTTAGAGGGAGAATAGCGATAT 58.821 38.462 0.00 0.00 35.74 1.63
5999 8188 6.544650 AGTTCTTAGAGGGAGAATAGCGATA 58.455 40.000 0.00 0.00 35.74 2.92
6000 8189 5.390387 AGTTCTTAGAGGGAGAATAGCGAT 58.610 41.667 0.00 0.00 35.74 4.58
6001 8190 4.794334 AGTTCTTAGAGGGAGAATAGCGA 58.206 43.478 0.00 0.00 35.74 4.93
6002 8191 5.523438 AAGTTCTTAGAGGGAGAATAGCG 57.477 43.478 0.00 0.00 35.74 4.26
6003 8192 8.184304 TGATAAGTTCTTAGAGGGAGAATAGC 57.816 38.462 0.00 0.00 35.74 2.97
6007 8196 9.672673 CAAATTGATAAGTTCTTAGAGGGAGAA 57.327 33.333 0.00 0.00 0.00 2.87
6008 8197 8.826765 ACAAATTGATAAGTTCTTAGAGGGAGA 58.173 33.333 0.00 0.00 0.00 3.71
6009 8198 8.887717 CACAAATTGATAAGTTCTTAGAGGGAG 58.112 37.037 0.00 0.00 0.00 4.30
6010 8199 8.383175 ACACAAATTGATAAGTTCTTAGAGGGA 58.617 33.333 0.00 0.00 0.00 4.20
6011 8200 8.567285 ACACAAATTGATAAGTTCTTAGAGGG 57.433 34.615 0.00 0.00 0.00 4.30
6026 8215 9.098355 GATAGATAGCAACACTACACAAATTGA 57.902 33.333 0.00 0.00 32.32 2.57
6029 8218 9.448438 TTTGATAGATAGCAACACTACACAAAT 57.552 29.630 0.00 0.00 32.32 2.32
6055 8244 7.114754 GGGTATATCACATCCATGATCAACAT 58.885 38.462 0.00 0.00 39.97 2.71
6060 8249 8.051535 AGAATTGGGTATATCACATCCATGATC 58.948 37.037 0.00 0.00 39.97 2.92
6068 8257 9.125026 GACAAGAAAGAATTGGGTATATCACAT 57.875 33.333 0.00 0.00 31.76 3.21
6091 8280 7.410120 TTGCTCTAGATGTTTCAGATAGACA 57.590 36.000 0.00 0.00 0.00 3.41
6108 8297 9.261180 GATACTAGTGCATTTTACATTGCTCTA 57.739 33.333 5.39 6.54 41.44 2.43
6129 8318 1.211212 TGCTTGGCAGATGCTGATACT 59.789 47.619 4.59 0.00 41.70 2.12
6134 8323 3.513680 TTATTTGCTTGGCAGATGCTG 57.486 42.857 4.59 0.00 40.61 4.41
6144 9141 8.752766 ATGACACTCTCATTTTTATTTGCTTG 57.247 30.769 0.00 0.00 35.99 4.01
6165 9162 3.262420 AGCACACAGTATCGGAAATGAC 58.738 45.455 0.00 0.00 0.00 3.06
6166 9163 3.610040 AGCACACAGTATCGGAAATGA 57.390 42.857 0.00 0.00 0.00 2.57
6196 9193 9.398921 AGGATCTTGGTAGACATAGGAATTTAT 57.601 33.333 0.00 0.00 31.99 1.40
6202 9200 6.075984 GGTAAGGATCTTGGTAGACATAGGA 58.924 44.000 0.00 0.00 31.99 2.94
6220 9218 5.982890 AAACATTCATGAAGGTGGTAAGG 57.017 39.130 24.99 0.00 35.33 2.69
6224 9222 5.707298 CAGACTAAACATTCATGAAGGTGGT 59.293 40.000 24.99 21.60 35.33 4.16
6225 9223 5.939883 TCAGACTAAACATTCATGAAGGTGG 59.060 40.000 24.99 19.02 35.33 4.61
6264 9262 5.839262 TCTGTAACTTGCATTAGTTCACG 57.161 39.130 7.05 0.00 39.08 4.35
6312 9310 2.514824 GCCGGGGTTGCTGATCTC 60.515 66.667 2.18 0.00 0.00 2.75
6336 9334 1.656441 GCTGCAACCTGTCAACCAG 59.344 57.895 0.00 0.00 41.15 4.00
6378 9376 5.059833 CACTTATCAAAGCCAGGTATCCTC 58.940 45.833 0.00 0.00 36.05 3.71
6417 9415 4.292186 TGCTTCAAGATAAGACTTGGCT 57.708 40.909 0.00 0.00 44.84 4.75
6429 9427 3.216800 ACAGTCTGCAAATGCTTCAAGA 58.783 40.909 6.97 0.00 42.66 3.02
6546 9544 5.565509 TGTGTTATGCCTTTCCATCTGTTA 58.434 37.500 0.00 0.00 0.00 2.41
6573 9571 0.322816 TGCCCTGATCAACTGCCTTC 60.323 55.000 0.00 0.00 0.00 3.46
6677 9675 7.086376 ACTGCACAAGCTAACATTTTCTAATG 58.914 34.615 0.00 0.00 43.13 1.90
6678 9676 7.219484 ACTGCACAAGCTAACATTTTCTAAT 57.781 32.000 0.00 0.00 42.74 1.73
6681 9679 5.520376 AACTGCACAAGCTAACATTTTCT 57.480 34.783 0.00 0.00 42.74 2.52
6682 9680 7.873739 ATTAACTGCACAAGCTAACATTTTC 57.126 32.000 0.00 0.00 42.74 2.29
6683 9681 9.927668 AATATTAACTGCACAAGCTAACATTTT 57.072 25.926 0.00 0.00 42.74 1.82
6717 9723 9.906660 CTTATAAACAATTGAGGCAACAAAGTA 57.093 29.630 13.59 0.00 41.41 2.24
6718 9724 7.872483 CCTTATAAACAATTGAGGCAACAAAGT 59.128 33.333 13.59 2.00 41.41 2.66
6719 9725 7.148590 GCCTTATAAACAATTGAGGCAACAAAG 60.149 37.037 22.28 10.99 40.57 2.77
6720 9726 6.648725 GCCTTATAAACAATTGAGGCAACAAA 59.351 34.615 22.28 3.87 40.57 2.83
6721 9727 6.162777 GCCTTATAAACAATTGAGGCAACAA 58.837 36.000 22.28 0.20 40.57 2.83
6722 9728 5.621104 CGCCTTATAAACAATTGAGGCAACA 60.621 40.000 24.99 2.08 40.87 3.33
6723 9729 4.798387 CGCCTTATAAACAATTGAGGCAAC 59.202 41.667 24.99 5.10 40.87 4.17
6724 9730 4.142271 CCGCCTTATAAACAATTGAGGCAA 60.142 41.667 24.99 8.49 40.87 4.52
6725 9731 3.380004 CCGCCTTATAAACAATTGAGGCA 59.620 43.478 24.99 5.61 40.87 4.75
6726 9732 3.380320 ACCGCCTTATAAACAATTGAGGC 59.620 43.478 18.94 18.94 37.79 4.70
6727 9733 6.238648 CCTTACCGCCTTATAAACAATTGAGG 60.239 42.308 13.59 8.34 0.00 3.86
6728 9734 6.725246 CCTTACCGCCTTATAAACAATTGAG 58.275 40.000 13.59 0.00 0.00 3.02
6729 9735 5.066764 GCCTTACCGCCTTATAAACAATTGA 59.933 40.000 13.59 0.00 0.00 2.57
6730 9736 5.278604 GCCTTACCGCCTTATAAACAATTG 58.721 41.667 3.24 3.24 0.00 2.32
6731 9737 4.035909 CGCCTTACCGCCTTATAAACAATT 59.964 41.667 0.00 0.00 0.00 2.32
6732 9738 3.562557 CGCCTTACCGCCTTATAAACAAT 59.437 43.478 0.00 0.00 0.00 2.71
6733 9739 2.937799 CGCCTTACCGCCTTATAAACAA 59.062 45.455 0.00 0.00 0.00 2.83
6734 9740 2.553086 CGCCTTACCGCCTTATAAACA 58.447 47.619 0.00 0.00 0.00 2.83
6735 9741 1.869132 CCGCCTTACCGCCTTATAAAC 59.131 52.381 0.00 0.00 0.00 2.01
6736 9742 1.811176 GCCGCCTTACCGCCTTATAAA 60.811 52.381 0.00 0.00 0.00 1.40
6737 9743 0.249996 GCCGCCTTACCGCCTTATAA 60.250 55.000 0.00 0.00 0.00 0.98
6738 9744 1.368579 GCCGCCTTACCGCCTTATA 59.631 57.895 0.00 0.00 0.00 0.98
6739 9745 2.110420 GCCGCCTTACCGCCTTAT 59.890 61.111 0.00 0.00 0.00 1.73
6740 9746 4.165486 GGCCGCCTTACCGCCTTA 62.165 66.667 0.71 0.00 0.00 2.69
6743 9749 4.603946 CTAGGCCGCCTTACCGCC 62.604 72.222 19.35 0.00 34.61 6.13
6744 9750 4.603946 CCTAGGCCGCCTTACCGC 62.604 72.222 19.35 0.00 34.61 5.68
6745 9751 3.925090 CCCTAGGCCGCCTTACCG 61.925 72.222 19.35 4.06 34.61 4.02
6746 9752 4.251771 GCCCTAGGCCGCCTTACC 62.252 72.222 19.35 0.11 44.06 2.85
6755 9761 4.840005 GTGGTGCTCGCCCTAGGC 62.840 72.222 2.05 0.00 46.75 3.93
6756 9762 4.162690 GGTGGTGCTCGCCCTAGG 62.163 72.222 0.06 0.06 40.09 3.02
6761 9767 4.459089 GAGAGGGTGGTGCTCGCC 62.459 72.222 2.27 2.27 45.12 5.54
6762 9768 2.010582 CTAGAGAGGGTGGTGCTCGC 62.011 65.000 0.00 0.00 33.98 5.03
6763 9769 2.010582 GCTAGAGAGGGTGGTGCTCG 62.011 65.000 0.00 0.00 33.98 5.03
6764 9770 1.819905 GCTAGAGAGGGTGGTGCTC 59.180 63.158 0.00 0.00 0.00 4.26
6765 9771 2.055042 CGCTAGAGAGGGTGGTGCT 61.055 63.158 0.00 0.00 0.00 4.40
6766 9772 2.496817 CGCTAGAGAGGGTGGTGC 59.503 66.667 0.00 0.00 0.00 5.01
6767 9773 2.496817 GCGCTAGAGAGGGTGGTG 59.503 66.667 0.00 0.00 37.92 4.17
6768 9774 1.934459 TAGGCGCTAGAGAGGGTGGT 61.934 60.000 7.64 0.00 37.92 4.16
6769 9775 0.755698 TTAGGCGCTAGAGAGGGTGG 60.756 60.000 7.64 0.00 37.92 4.61
6770 9776 0.671251 CTTAGGCGCTAGAGAGGGTG 59.329 60.000 7.64 0.00 37.92 4.61
6771 9777 0.468400 CCTTAGGCGCTAGAGAGGGT 60.468 60.000 7.64 0.00 37.92 4.34
6772 9778 1.811645 GCCTTAGGCGCTAGAGAGGG 61.812 65.000 7.77 2.16 39.62 4.30
6773 9779 1.663173 GCCTTAGGCGCTAGAGAGG 59.337 63.158 7.77 9.28 39.62 3.69
6784 9790 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
6785 9791 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
6786 9792 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
6787 9793 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
6788 9794 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
6789 9795 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
6790 9796 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
6791 9797 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
6792 9798 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
6793 9799 1.600413 GCAGCGCCTTACAAATATGCC 60.600 52.381 2.29 0.00 0.00 4.40
6794 9800 1.334869 AGCAGCGCCTTACAAATATGC 59.665 47.619 2.29 2.78 0.00 3.14
6795 9801 3.187227 CCTAGCAGCGCCTTACAAATATG 59.813 47.826 2.29 0.00 0.00 1.78
6796 9802 3.403038 CCTAGCAGCGCCTTACAAATAT 58.597 45.455 2.29 0.00 0.00 1.28
6797 9803 2.484770 CCCTAGCAGCGCCTTACAAATA 60.485 50.000 2.29 0.00 0.00 1.40
6798 9804 1.668419 CCTAGCAGCGCCTTACAAAT 58.332 50.000 2.29 0.00 0.00 2.32
6799 9805 0.392461 CCCTAGCAGCGCCTTACAAA 60.392 55.000 2.29 0.00 0.00 2.83
6800 9806 1.220749 CCCTAGCAGCGCCTTACAA 59.779 57.895 2.29 0.00 0.00 2.41
6801 9807 2.900273 CCCTAGCAGCGCCTTACA 59.100 61.111 2.29 0.00 0.00 2.41
6802 9808 2.589159 GCCCTAGCAGCGCCTTAC 60.589 66.667 2.29 0.00 39.53 2.34
6809 9815 1.669437 GATAAGGCGCCCTAGCAGC 60.669 63.158 26.15 2.42 39.83 5.25
6810 9816 0.601311 GTGATAAGGCGCCCTAGCAG 60.601 60.000 22.76 0.00 39.83 4.24
6811 9817 1.445942 GTGATAAGGCGCCCTAGCA 59.554 57.895 26.15 22.09 39.83 3.49
6812 9818 1.301795 GGTGATAAGGCGCCCTAGC 60.302 63.158 26.15 19.23 31.13 3.42
6813 9819 1.629043 TAGGTGATAAGGCGCCCTAG 58.371 55.000 26.15 0.00 39.26 3.02
6814 9820 1.968493 CTTAGGTGATAAGGCGCCCTA 59.032 52.381 26.15 16.65 39.26 3.53
6815 9821 0.759346 CTTAGGTGATAAGGCGCCCT 59.241 55.000 26.15 14.38 39.26 5.19
6816 9822 0.885150 GCTTAGGTGATAAGGCGCCC 60.885 60.000 26.15 8.39 41.16 6.13
6817 9823 1.222115 CGCTTAGGTGATAAGGCGCC 61.222 60.000 21.89 21.89 41.16 6.53
6818 9824 0.529992 ACGCTTAGGTGATAAGGCGC 60.530 55.000 0.00 0.00 41.04 6.53
6819 9825 1.067212 AGACGCTTAGGTGATAAGGCG 59.933 52.381 0.00 0.00 41.16 5.52
6820 9826 2.892784 AGACGCTTAGGTGATAAGGC 57.107 50.000 0.00 0.00 41.16 4.35
6821 9827 3.256136 CCCTAGACGCTTAGGTGATAAGG 59.744 52.174 10.83 0.00 41.16 2.69
6822 9828 3.305471 GCCCTAGACGCTTAGGTGATAAG 60.305 52.174 10.83 0.00 43.33 1.73
6823 9829 2.626743 GCCCTAGACGCTTAGGTGATAA 59.373 50.000 10.83 0.00 38.86 1.75
6824 9830 2.236766 GCCCTAGACGCTTAGGTGATA 58.763 52.381 10.83 0.00 38.86 2.15
6825 9831 1.041437 GCCCTAGACGCTTAGGTGAT 58.959 55.000 10.83 0.00 38.86 3.06
6826 9832 0.323999 TGCCCTAGACGCTTAGGTGA 60.324 55.000 10.83 0.00 38.86 4.02
6827 9833 0.103208 CTGCCCTAGACGCTTAGGTG 59.897 60.000 10.83 5.10 38.86 4.00
6828 9834 1.043673 CCTGCCCTAGACGCTTAGGT 61.044 60.000 10.83 0.00 38.86 3.08
6829 9835 0.755698 TCCTGCCCTAGACGCTTAGG 60.756 60.000 5.97 5.97 39.99 2.69
6830 9836 0.386113 GTCCTGCCCTAGACGCTTAG 59.614 60.000 0.00 0.00 0.00 2.18
6831 9837 0.323999 TGTCCTGCCCTAGACGCTTA 60.324 55.000 0.00 0.00 35.71 3.09
6832 9838 1.609501 TGTCCTGCCCTAGACGCTT 60.610 57.895 0.00 0.00 35.71 4.68
6833 9839 2.037367 TGTCCTGCCCTAGACGCT 59.963 61.111 0.00 0.00 35.71 5.07
6834 9840 2.184579 GTGTCCTGCCCTAGACGC 59.815 66.667 0.00 0.00 35.71 5.19
6835 9841 1.258445 AAGGTGTCCTGCCCTAGACG 61.258 60.000 0.00 0.00 35.71 4.18
6836 9842 1.861982 TAAGGTGTCCTGCCCTAGAC 58.138 55.000 0.00 0.00 32.13 2.59
6837 9843 2.634639 TTAAGGTGTCCTGCCCTAGA 57.365 50.000 0.00 0.00 32.13 2.43
6838 9844 3.713826 TTTTAAGGTGTCCTGCCCTAG 57.286 47.619 0.00 0.00 32.13 3.02
6839 9845 3.138653 TGTTTTTAAGGTGTCCTGCCCTA 59.861 43.478 0.00 0.00 32.13 3.53
6840 9846 2.091555 TGTTTTTAAGGTGTCCTGCCCT 60.092 45.455 0.00 0.00 32.13 5.19
6841 9847 2.312390 TGTTTTTAAGGTGTCCTGCCC 58.688 47.619 0.00 0.00 32.13 5.36
6842 9848 4.306600 CATTGTTTTTAAGGTGTCCTGCC 58.693 43.478 0.00 0.00 32.13 4.85
6843 9849 4.202212 ACCATTGTTTTTAAGGTGTCCTGC 60.202 41.667 0.00 0.00 32.13 4.85
6844 9850 5.529581 ACCATTGTTTTTAAGGTGTCCTG 57.470 39.130 0.00 0.00 32.13 3.86
6845 9851 5.683770 GCAACCATTGTTTTTAAGGTGTCCT 60.684 40.000 0.00 0.00 29.90 3.85
6846 9852 4.509970 GCAACCATTGTTTTTAAGGTGTCC 59.490 41.667 0.00 0.00 30.42 4.02
6847 9853 4.509970 GGCAACCATTGTTTTTAAGGTGTC 59.490 41.667 0.00 0.00 30.42 3.67
6848 9854 4.163268 AGGCAACCATTGTTTTTAAGGTGT 59.837 37.500 0.00 0.00 30.42 4.16
6849 9855 4.702831 AGGCAACCATTGTTTTTAAGGTG 58.297 39.130 0.00 0.00 30.42 4.00
6850 9856 4.653801 AGAGGCAACCATTGTTTTTAAGGT 59.346 37.500 0.00 0.00 30.42 3.50
6851 9857 4.990426 CAGAGGCAACCATTGTTTTTAAGG 59.010 41.667 0.00 0.00 30.42 2.69
6852 9858 5.463061 CACAGAGGCAACCATTGTTTTTAAG 59.537 40.000 0.00 0.00 30.42 1.85
6853 9859 5.355596 CACAGAGGCAACCATTGTTTTTAA 58.644 37.500 0.00 0.00 30.42 1.52
6854 9860 4.202202 CCACAGAGGCAACCATTGTTTTTA 60.202 41.667 0.00 0.00 30.42 1.52
6855 9861 3.432046 CCACAGAGGCAACCATTGTTTTT 60.432 43.478 0.00 0.00 30.42 1.94
6856 9862 2.102925 CCACAGAGGCAACCATTGTTTT 59.897 45.455 0.00 0.00 30.42 2.43
6857 9863 1.688197 CCACAGAGGCAACCATTGTTT 59.312 47.619 0.00 0.00 30.42 2.83
6858 9864 1.331214 CCACAGAGGCAACCATTGTT 58.669 50.000 0.00 0.00 34.14 2.83
6859 9865 3.040965 CCACAGAGGCAACCATTGT 57.959 52.632 0.00 0.00 37.17 2.71
6907 9913 4.466726 AGAGGCATACCCGAGGTATATTTC 59.533 45.833 13.25 11.01 45.97 2.17
6934 9940 4.697514 TGACAACATCTAGGCATCTTAGC 58.302 43.478 0.00 0.00 0.00 3.09
6989 9995 7.728847 TGTTAGAAATGGTGATATGATTCCG 57.271 36.000 0.00 0.00 0.00 4.30
7002 10008 9.410556 CAGGTTCTTTTAACATGTTAGAAATGG 57.589 33.333 19.13 10.54 0.00 3.16
7019 10025 5.763204 TCGTAAAATGCTCTTCAGGTTCTTT 59.237 36.000 0.00 0.00 0.00 2.52
7041 10047 4.145365 TGTGTGGTATATTTCCCCTTCG 57.855 45.455 0.00 0.00 0.00 3.79
7070 10076 9.145865 GAAAACAGTACTCTCTAGAAAATCAGG 57.854 37.037 0.00 0.00 0.00 3.86
7115 10121 7.229306 CAGCAGCATAATTATAAAGGTTCTCCA 59.771 37.037 0.00 0.00 35.89 3.86
7121 10127 6.966534 AAGCAGCAGCATAATTATAAAGGT 57.033 33.333 3.17 0.00 45.49 3.50
7136 10142 6.908825 TGTAGTGGTTTAAAATAAGCAGCAG 58.091 36.000 0.00 0.00 36.31 4.24
7154 10160 5.173774 ACAATTGACAACTTGCTGTAGTG 57.826 39.130 13.59 0.00 0.00 2.74
7160 10166 5.518848 TGATCAACAATTGACAACTTGCT 57.481 34.783 13.59 0.00 43.48 3.91
7161 10167 5.693104 ACATGATCAACAATTGACAACTTGC 59.307 36.000 13.59 0.00 43.48 4.01
7173 10247 7.450074 ACTGTAAGAACCTACATGATCAACAA 58.550 34.615 0.00 0.00 37.43 2.83
7182 10259 5.818678 TGGTTGACTGTAAGAACCTACAT 57.181 39.130 13.81 0.00 40.47 2.29
7183 10260 5.129815 ACTTGGTTGACTGTAAGAACCTACA 59.870 40.000 13.81 0.00 40.47 2.74
7184 10261 5.465724 CACTTGGTTGACTGTAAGAACCTAC 59.534 44.000 13.81 0.00 40.47 3.18
7185 10262 5.129815 ACACTTGGTTGACTGTAAGAACCTA 59.870 40.000 13.81 7.97 40.47 3.08
7186 10263 4.080526 ACACTTGGTTGACTGTAAGAACCT 60.081 41.667 13.81 0.00 40.47 3.50
7187 10264 4.196971 ACACTTGGTTGACTGTAAGAACC 58.803 43.478 8.29 8.29 40.29 3.62
7231 10308 2.376518 AGCTCTCCAAGGTCCATCAAAA 59.623 45.455 0.00 0.00 0.00 2.44
7236 10313 1.834263 GTACAGCTCTCCAAGGTCCAT 59.166 52.381 0.00 0.00 31.91 3.41
7237 10314 1.203187 AGTACAGCTCTCCAAGGTCCA 60.203 52.381 0.00 0.00 31.91 4.02
7242 10319 6.463995 AGATTCTTAGTACAGCTCTCCAAG 57.536 41.667 0.00 0.00 0.00 3.61
7268 10345 6.314648 TCAACATGCACAGAGAGTCAATAATC 59.685 38.462 0.00 0.00 0.00 1.75
7289 10366 7.097192 TGACTGTAAGAACCTACATGATCAAC 58.903 38.462 0.00 0.00 37.43 3.18
7431 10508 4.980592 TGCAGCCCCCTCAGGTGA 62.981 66.667 0.00 0.00 34.66 4.02
7439 10516 3.645268 ATCTCCGTTTGCAGCCCCC 62.645 63.158 0.00 0.00 0.00 5.40
7865 10947 7.503566 AGAGAAAACCATCAAAGATGAGAACAA 59.496 33.333 8.49 0.00 39.39 2.83
7914 10996 8.752005 ATATATGCCTGTGTTGTCTACAAAAT 57.248 30.769 0.00 0.00 38.80 1.82
7919 11001 5.406780 GCAGATATATGCCTGTGTTGTCTAC 59.593 44.000 11.34 0.00 40.43 2.59
7972 11054 0.174389 ATCTGTCTGTAGGCACGCTG 59.826 55.000 0.00 0.00 0.00 5.18
7994 11076 0.099082 GTGAACCCAAACGAACGCAA 59.901 50.000 0.00 0.00 0.00 4.85
8010 11092 3.625853 TCTGTTTGGGTTGTTCATGTGA 58.374 40.909 0.00 0.00 0.00 3.58
8017 11099 3.118445 CCATGGTTTCTGTTTGGGTTGTT 60.118 43.478 2.57 0.00 0.00 2.83
8018 11100 2.433970 CCATGGTTTCTGTTTGGGTTGT 59.566 45.455 2.57 0.00 0.00 3.32
8019 11101 2.433970 ACCATGGTTTCTGTTTGGGTTG 59.566 45.455 13.00 0.00 0.00 3.77
8020 11102 2.758130 ACCATGGTTTCTGTTTGGGTT 58.242 42.857 13.00 0.00 0.00 4.11
8021 11103 2.470057 ACCATGGTTTCTGTTTGGGT 57.530 45.000 13.00 0.00 0.00 4.51
8022 11104 3.836365 AAACCATGGTTTCTGTTTGGG 57.164 42.857 32.77 0.00 43.95 4.12
8023 11105 4.332268 CACAAAACCATGGTTTCTGTTTGG 59.668 41.667 36.64 24.64 46.22 3.28
8024 11106 4.934602 ACACAAAACCATGGTTTCTGTTTG 59.065 37.500 36.64 31.03 46.22 2.93
8025 11107 5.159273 ACACAAAACCATGGTTTCTGTTT 57.841 34.783 36.64 28.88 46.22 2.83
8026 11108 4.221703 TGACACAAAACCATGGTTTCTGTT 59.778 37.500 36.64 27.25 46.22 3.16
8082 11164 2.669569 CTGACGTGTGGGCCCAAG 60.670 66.667 30.64 23.23 0.00 3.61
8108 11190 4.162690 AAGGAGCCGGATGTCGCC 62.163 66.667 5.05 0.00 37.59 5.54
8120 11202 2.932614 CACTCGTGGCATTTAGAAGGAG 59.067 50.000 0.00 0.00 0.00 3.69
8300 11383 1.146957 CCGTTGACGTCACGGTGAAA 61.147 55.000 32.83 13.72 41.62 2.69
8330 11413 4.602259 ATATGGTCGCGCACGGGG 62.602 66.667 8.75 0.00 40.63 5.73
8338 11421 1.497991 ACATGCGTACATATGGTCGC 58.502 50.000 27.47 27.47 42.44 5.19
8370 11453 1.583495 CCAGTACCTCTGACGCGTCA 61.583 60.000 36.96 36.96 46.27 4.35
8375 11458 1.668101 GCCTCCCAGTACCTCTGACG 61.668 65.000 0.00 0.00 46.27 4.35
8462 11547 2.967397 CCAGAACGACCGGCACTA 59.033 61.111 0.00 0.00 0.00 2.74
8536 11626 1.659335 GCAAACGTCGAGTCGTGGA 60.659 57.895 13.12 0.00 43.38 4.02
8548 11638 2.380410 CGGAAGTCCTCGGCAAACG 61.380 63.158 0.00 0.00 46.11 3.60
8549 11639 2.677979 GCGGAAGTCCTCGGCAAAC 61.678 63.158 0.00 0.00 46.78 2.93
8550 11640 2.358247 GCGGAAGTCCTCGGCAAA 60.358 61.111 0.00 0.00 46.78 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.