Multiple sequence alignment - TraesCS6D01G267400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G267400 chr6D 100.000 6191 0 0 1 6191 377349933 377343743 0.000000e+00 11433.0
1 TraesCS6D01G267400 chr6D 93.506 462 28 2 4220 4679 24859155 24858694 0.000000e+00 686.0
2 TraesCS6D01G267400 chr6D 93.074 462 30 2 4220 4679 68064643 68065104 0.000000e+00 675.0
3 TraesCS6D01G267400 chr6D 99.457 184 1 0 2624 2807 304096827 304097010 9.940000e-88 335.0
4 TraesCS6D01G267400 chr6A 95.247 3240 87 29 2985 6191 518790876 518787671 0.000000e+00 5068.0
5 TraesCS6D01G267400 chr6A 94.048 1529 42 17 421 1930 518793444 518791946 0.000000e+00 2274.0
6 TraesCS6D01G267400 chr6A 91.702 711 29 12 1929 2623 518791662 518790966 0.000000e+00 959.0
7 TraesCS6D01G267400 chr6A 78.351 679 107 28 3162 3827 578565027 578564376 2.690000e-108 403.0
8 TraesCS6D01G267400 chr6A 94.915 118 4 1 2861 2978 518790959 518790844 3.810000e-42 183.0
9 TraesCS6D01G267400 chr6A 89.362 141 13 2 1175 1314 578565900 578565761 6.380000e-40 176.0
10 TraesCS6D01G267400 chr6B 91.393 1859 114 21 3819 5647 563489164 563487322 0.000000e+00 2505.0
11 TraesCS6D01G267400 chr6B 94.757 1297 45 10 648 1931 563492582 563491296 0.000000e+00 1997.0
12 TraesCS6D01G267400 chr6B 97.337 1014 26 1 2808 3821 563490413 563489401 0.000000e+00 1722.0
13 TraesCS6D01G267400 chr6B 93.709 302 13 3 2328 2623 563490707 563490406 1.220000e-121 448.0
14 TraesCS6D01G267400 chr6B 98.396 187 3 0 2624 2810 398844022 398843836 4.630000e-86 329.0
15 TraesCS6D01G267400 chr6B 87.797 295 14 7 1929 2202 563490997 563490704 5.980000e-85 326.0
16 TraesCS6D01G267400 chr6B 92.035 113 7 2 476 587 563499653 563499542 2.310000e-34 158.0
17 TraesCS6D01G267400 chr6B 89.796 98 7 3 560 654 563492858 563492761 8.430000e-24 122.0
18 TraesCS6D01G267400 chr1D 81.169 2841 361 88 2814 5540 298647957 298645177 0.000000e+00 2122.0
19 TraesCS6D01G267400 chr1D 81.002 1158 129 41 705 1843 298649893 298648808 0.000000e+00 835.0
20 TraesCS6D01G267400 chr1D 94.156 462 25 2 4220 4679 83711844 83712305 0.000000e+00 702.0
21 TraesCS6D01G267400 chr1B 83.659 1432 163 46 3162 4564 402109682 402108293 0.000000e+00 1282.0
22 TraesCS6D01G267400 chr1B 81.491 1221 140 45 583 1767 402114014 402112844 0.000000e+00 924.0
23 TraesCS6D01G267400 chr1B 84.084 666 85 8 4550 5196 402104995 402104332 1.900000e-174 623.0
24 TraesCS6D01G267400 chr1B 91.667 156 12 1 2451 2605 268400015 268400170 1.350000e-51 215.0
25 TraesCS6D01G267400 chr1B 89.759 166 13 4 2448 2611 632021081 632020918 6.290000e-50 209.0
26 TraesCS6D01G267400 chr1A 82.495 1491 191 43 2814 4261 372552888 372551425 0.000000e+00 1243.0
27 TraesCS6D01G267400 chr1A 82.668 1027 136 16 4270 5257 372551236 372550213 0.000000e+00 872.0
28 TraesCS6D01G267400 chr1A 80.333 1200 137 60 583 1760 372555065 372553943 0.000000e+00 817.0
29 TraesCS6D01G267400 chr1A 76.096 251 30 15 5297 5540 372550040 372549813 3.050000e-18 104.0
30 TraesCS6D01G267400 chr7D 93.939 462 26 2 4220 4679 562979124 562979585 0.000000e+00 697.0
31 TraesCS6D01G267400 chr7D 92.157 153 11 1 2452 2603 34373318 34373470 1.350000e-51 215.0
32 TraesCS6D01G267400 chr7D 80.000 180 31 1 181 360 30424038 30423864 1.810000e-25 128.0
33 TraesCS6D01G267400 chr3D 93.939 462 26 2 4220 4679 594563834 594564295 0.000000e+00 697.0
34 TraesCS6D01G267400 chr3D 97.895 190 4 0 2618 2807 210637974 210638163 4.630000e-86 329.0
35 TraesCS6D01G267400 chr3D 98.378 185 3 0 2624 2808 257147311 257147127 5.980000e-85 326.0
36 TraesCS6D01G267400 chr3D 79.343 213 32 5 201 407 61795742 61795536 8.370000e-29 139.0
37 TraesCS6D01G267400 chr5D 93.506 462 28 2 4220 4679 501366640 501366179 0.000000e+00 686.0
38 TraesCS6D01G267400 chr5D 98.913 184 2 0 2624 2807 284182721 284182904 4.630000e-86 329.0
39 TraesCS6D01G267400 chr4D 92.857 462 31 2 4220 4679 500241530 500241991 0.000000e+00 669.0
40 TraesCS6D01G267400 chr4D 97.872 188 4 0 2623 2810 254666043 254666230 5.980000e-85 326.0
41 TraesCS6D01G267400 chr2D 99.462 186 1 0 2622 2807 473705919 473705734 7.690000e-89 339.0
42 TraesCS6D01G267400 chr2D 98.370 184 2 1 2624 2807 236136250 236136432 7.740000e-84 322.0
43 TraesCS6D01G267400 chrUn 99.457 184 1 0 2624 2807 134241860 134241677 9.940000e-88 335.0
44 TraesCS6D01G267400 chr2B 92.810 153 11 0 2451 2603 288939770 288939922 8.080000e-54 222.0
45 TraesCS6D01G267400 chr7B 90.798 163 13 2 2450 2611 505937312 505937473 3.760000e-52 217.0
46 TraesCS6D01G267400 chr7B 92.157 153 11 1 2452 2603 44939554 44939706 1.350000e-51 215.0
47 TraesCS6D01G267400 chr5B 90.683 161 11 3 2451 2609 665744468 665744626 1.750000e-50 211.0
48 TraesCS6D01G267400 chr5A 81.122 196 32 5 1059 1253 602478136 602478327 1.070000e-32 152.0
49 TraesCS6D01G267400 chr3A 78.049 246 42 5 173 407 69480930 69480686 1.800000e-30 145.0
50 TraesCS6D01G267400 chr3A 93.023 43 2 1 1624 1666 175939623 175939582 1.860000e-05 62.1
51 TraesCS6D01G267400 chr7A 76.768 297 42 13 116 401 696817750 696818030 2.330000e-29 141.0
52 TraesCS6D01G267400 chr7A 85.833 120 16 1 1083 1202 727514896 727514778 6.520000e-25 126.0
53 TraesCS6D01G267400 chr4A 91.525 59 5 0 264 322 43210893 43210835 1.430000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G267400 chr6D 377343743 377349933 6190 True 11433.000000 11433 100.000000 1 6191 1 chr6D.!!$R2 6190
1 TraesCS6D01G267400 chr6A 518787671 518793444 5773 True 2121.000000 5068 93.978000 421 6191 4 chr6A.!!$R1 5770
2 TraesCS6D01G267400 chr6A 578564376 578565900 1524 True 289.500000 403 83.856500 1175 3827 2 chr6A.!!$R2 2652
3 TraesCS6D01G267400 chr6B 563487322 563492858 5536 True 1186.666667 2505 92.464833 560 5647 6 chr6B.!!$R3 5087
4 TraesCS6D01G267400 chr1D 298645177 298649893 4716 True 1478.500000 2122 81.085500 705 5540 2 chr1D.!!$R1 4835
5 TraesCS6D01G267400 chr1B 402104332 402114014 9682 True 943.000000 1282 83.078000 583 5196 3 chr1B.!!$R2 4613
6 TraesCS6D01G267400 chr1A 372549813 372555065 5252 True 759.000000 1243 80.398000 583 5540 4 chr1A.!!$R1 4957

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.032515 AATTTCCTAAAGGGGCCCGG 60.033 55.000 18.95 12.85 35.41 5.73 F
317 318 0.179282 CGACGAGCTTTTACACGTGC 60.179 55.000 17.22 0.00 36.99 5.34 F
318 319 0.179282 GACGAGCTTTTACACGTGCG 60.179 55.000 17.22 10.89 36.99 5.34 F
1622 1879 0.042131 TGGGGGACGATGTAGTTCCT 59.958 55.000 0.00 0.00 39.76 3.36 F
2641 5098 0.306533 GCAAGGTTTTTGAGTCGCGA 59.693 50.000 3.71 3.71 0.00 5.87 F
2647 5104 0.306533 TTTTTGAGTCGCGACTTGGC 59.693 50.000 39.38 27.60 42.66 4.52 F
2685 5142 0.384477 CGGCTCAGCGTATAGTCGAC 60.384 60.000 7.70 7.70 43.30 4.20 F
2745 5202 0.519175 CGAGTCGCGCTGATTTTTGG 60.519 55.000 5.56 0.00 0.00 3.28 F
2783 5240 0.656786 GTCGGCGACTATACAGCGAC 60.657 60.000 31.15 1.70 0.00 5.19 F
2795 5252 0.811915 ACAGCGACTAATCAGCGACT 59.188 50.000 0.00 0.00 35.78 4.18 F
2797 5254 1.095600 AGCGACTAATCAGCGACTCA 58.904 50.000 0.00 0.00 35.78 3.41 F
3861 6783 1.138266 TCAATACCTTCCTGTAGCGCC 59.862 52.381 2.29 0.00 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1575 0.961019 GCACCAAATCAGCCACTCAA 59.039 50.000 0.00 0.00 0.00 3.02 R
1430 1657 2.813061 CAACCAGCAAACAGTTTCCAG 58.187 47.619 0.00 0.00 0.00 3.86 R
1667 1924 3.202906 TGACCACCATAATTAAGCGAGC 58.797 45.455 0.00 0.00 0.00 5.03 R
2756 5213 0.240411 ATAGTCGCCGACTAATCGCC 59.760 55.000 28.54 0.00 46.28 5.54 R
3976 6899 1.442769 TCACAATCGCTCCTCTTTGC 58.557 50.000 0.00 0.00 0.00 3.68 R
3995 6918 2.679082 AGCATACCTCCATAGACGGTT 58.321 47.619 0.00 0.00 32.36 4.44 R
4125 7052 3.064958 ACGCAGATCTGAAAATGCTGATG 59.935 43.478 27.04 0.61 36.52 3.07 R
4689 11130 4.019174 ACATAGGGCAAAGGTTCAATGAG 58.981 43.478 0.00 0.00 0.00 2.90 R
4852 11308 2.995466 TCTTTGGCGCTTGATTCTTG 57.005 45.000 7.64 0.00 0.00 3.02 R
4937 11408 1.068748 CACTTTGGCAGCAGCTAAGTG 60.069 52.381 23.67 23.67 46.27 3.16 R
4938 11409 1.202806 TCACTTTGGCAGCAGCTAAGT 60.203 47.619 13.44 13.44 42.41 2.24 R
5218 11692 1.110442 CTTGGTGCACAAAACCTGGA 58.890 50.000 20.43 0.00 38.91 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.391312 AGTAATTGGAATGCAAGGTGTTC 57.609 39.130 0.00 0.00 0.00 3.18
23 24 3.683365 AATTGGAATGCAAGGTGTTCC 57.317 42.857 8.78 8.78 41.37 3.62
24 25 3.837893 TGGAATGCAAGGTGTTCCA 57.162 47.368 13.51 13.51 46.67 3.53
25 26 1.619654 TGGAATGCAAGGTGTTCCAG 58.380 50.000 13.51 0.00 44.67 3.86
26 27 0.890683 GGAATGCAAGGTGTTCCAGG 59.109 55.000 10.52 0.00 40.82 4.45
27 28 1.620822 GAATGCAAGGTGTTCCAGGT 58.379 50.000 0.00 0.00 35.89 4.00
28 29 1.541588 GAATGCAAGGTGTTCCAGGTC 59.458 52.381 0.00 0.00 35.89 3.85
29 30 0.478072 ATGCAAGGTGTTCCAGGTCA 59.522 50.000 0.00 0.00 35.89 4.02
30 31 0.257328 TGCAAGGTGTTCCAGGTCAA 59.743 50.000 0.00 0.00 35.89 3.18
31 32 1.341482 TGCAAGGTGTTCCAGGTCAAA 60.341 47.619 0.00 0.00 35.89 2.69
32 33 1.754226 GCAAGGTGTTCCAGGTCAAAA 59.246 47.619 0.00 0.00 35.89 2.44
33 34 2.365293 GCAAGGTGTTCCAGGTCAAAAT 59.635 45.455 0.00 0.00 35.89 1.82
34 35 3.572255 GCAAGGTGTTCCAGGTCAAAATA 59.428 43.478 0.00 0.00 35.89 1.40
35 36 4.038642 GCAAGGTGTTCCAGGTCAAAATAA 59.961 41.667 0.00 0.00 35.89 1.40
36 37 5.279456 GCAAGGTGTTCCAGGTCAAAATAAT 60.279 40.000 0.00 0.00 35.89 1.28
37 38 6.071616 GCAAGGTGTTCCAGGTCAAAATAATA 60.072 38.462 0.00 0.00 35.89 0.98
38 39 7.524698 GCAAGGTGTTCCAGGTCAAAATAATAA 60.525 37.037 0.00 0.00 35.89 1.40
39 40 8.531146 CAAGGTGTTCCAGGTCAAAATAATAAT 58.469 33.333 0.00 0.00 35.89 1.28
40 41 9.762381 AAGGTGTTCCAGGTCAAAATAATAATA 57.238 29.630 0.00 0.00 35.89 0.98
41 42 9.762381 AGGTGTTCCAGGTCAAAATAATAATAA 57.238 29.630 0.00 0.00 35.89 1.40
62 63 7.857734 ATAATATGGTTGACATGTTGTTCGA 57.142 32.000 0.00 0.00 40.55 3.71
63 64 6.757897 AATATGGTTGACATGTTGTTCGAT 57.242 33.333 0.00 0.00 39.15 3.59
64 65 7.857734 AATATGGTTGACATGTTGTTCGATA 57.142 32.000 0.00 0.00 39.15 2.92
65 66 5.545658 ATGGTTGACATGTTGTTCGATAC 57.454 39.130 0.00 0.00 38.70 2.24
66 67 3.430556 TGGTTGACATGTTGTTCGATACG 59.569 43.478 0.00 0.00 0.00 3.06
67 68 3.404564 GTTGACATGTTGTTCGATACGC 58.595 45.455 0.00 0.00 0.00 4.42
68 69 1.651631 TGACATGTTGTTCGATACGCG 59.348 47.619 3.53 3.53 42.69 6.01
69 70 0.368907 ACATGTTGTTCGATACGCGC 59.631 50.000 5.73 0.00 40.61 6.86
70 71 0.315059 CATGTTGTTCGATACGCGCC 60.315 55.000 5.73 0.00 40.61 6.53
71 72 1.426041 ATGTTGTTCGATACGCGCCC 61.426 55.000 5.73 0.00 40.61 6.13
72 73 2.881827 TTGTTCGATACGCGCCCG 60.882 61.111 5.73 7.63 40.61 6.13
82 83 2.414179 CGCGCCCGTGGAGTTATA 59.586 61.111 0.00 0.00 0.00 0.98
83 84 1.660575 CGCGCCCGTGGAGTTATAG 60.661 63.158 0.00 0.00 0.00 1.31
84 85 1.300697 GCGCCCGTGGAGTTATAGG 60.301 63.158 0.00 0.00 0.00 2.57
85 86 1.366366 CGCCCGTGGAGTTATAGGG 59.634 63.158 0.00 0.00 44.72 3.53
86 87 1.752833 GCCCGTGGAGTTATAGGGG 59.247 63.158 0.70 0.00 43.27 4.79
87 88 1.752833 CCCGTGGAGTTATAGGGGC 59.247 63.158 0.00 0.00 38.44 5.80
88 89 1.752833 CCGTGGAGTTATAGGGGCC 59.247 63.158 0.00 0.00 0.00 5.80
89 90 1.366366 CGTGGAGTTATAGGGGCCG 59.634 63.158 0.00 0.00 0.00 6.13
90 91 1.752833 GTGGAGTTATAGGGGCCGG 59.247 63.158 0.00 0.00 0.00 6.13
91 92 1.460689 TGGAGTTATAGGGGCCGGG 60.461 63.158 2.18 0.00 0.00 5.73
92 93 1.152183 GGAGTTATAGGGGCCGGGA 60.152 63.158 2.18 0.00 0.00 5.14
93 94 0.546988 GGAGTTATAGGGGCCGGGAT 60.547 60.000 2.18 0.00 0.00 3.85
94 95 1.359168 GAGTTATAGGGGCCGGGATT 58.641 55.000 2.18 0.00 0.00 3.01
95 96 1.703513 GAGTTATAGGGGCCGGGATTT 59.296 52.381 2.18 0.00 0.00 2.17
96 97 1.423921 AGTTATAGGGGCCGGGATTTG 59.576 52.381 2.18 0.00 0.00 2.32
97 98 0.111639 TTATAGGGGCCGGGATTTGC 59.888 55.000 2.18 0.00 0.00 3.68
98 99 2.119484 TATAGGGGCCGGGATTTGCG 62.119 60.000 2.18 0.00 0.00 4.85
100 101 4.493049 GGGGCCGGGATTTGCGTA 62.493 66.667 2.18 0.00 0.00 4.42
101 102 2.203294 GGGCCGGGATTTGCGTAT 60.203 61.111 2.18 0.00 0.00 3.06
102 103 2.258726 GGGCCGGGATTTGCGTATC 61.259 63.158 2.18 0.00 0.00 2.24
103 104 2.604174 GGCCGGGATTTGCGTATCG 61.604 63.158 2.18 0.00 0.00 2.92
104 105 1.885850 GCCGGGATTTGCGTATCGT 60.886 57.895 2.18 0.00 0.00 3.73
105 106 1.931551 CCGGGATTTGCGTATCGTG 59.068 57.895 0.00 0.00 0.00 4.35
106 107 1.495584 CCGGGATTTGCGTATCGTGG 61.496 60.000 0.00 0.00 0.00 4.94
107 108 0.528901 CGGGATTTGCGTATCGTGGA 60.529 55.000 0.00 0.00 0.00 4.02
108 109 1.872237 CGGGATTTGCGTATCGTGGAT 60.872 52.381 0.00 0.00 0.00 3.41
109 110 1.531149 GGGATTTGCGTATCGTGGATG 59.469 52.381 0.00 0.00 0.00 3.51
110 111 1.531149 GGATTTGCGTATCGTGGATGG 59.469 52.381 0.00 0.00 0.00 3.51
111 112 1.531149 GATTTGCGTATCGTGGATGGG 59.469 52.381 0.00 0.00 0.00 4.00
112 113 0.250793 TTTGCGTATCGTGGATGGGT 59.749 50.000 0.00 0.00 0.00 4.51
113 114 0.461163 TTGCGTATCGTGGATGGGTG 60.461 55.000 0.00 0.00 0.00 4.61
114 115 1.143183 GCGTATCGTGGATGGGTGT 59.857 57.895 0.00 0.00 0.00 4.16
115 116 0.386476 GCGTATCGTGGATGGGTGTA 59.614 55.000 0.00 0.00 0.00 2.90
116 117 1.602165 GCGTATCGTGGATGGGTGTAG 60.602 57.143 0.00 0.00 0.00 2.74
117 118 1.951602 CGTATCGTGGATGGGTGTAGA 59.048 52.381 0.00 0.00 0.00 2.59
118 119 2.557056 CGTATCGTGGATGGGTGTAGAT 59.443 50.000 0.00 0.00 0.00 1.98
119 120 3.005472 CGTATCGTGGATGGGTGTAGATT 59.995 47.826 0.00 0.00 0.00 2.40
120 121 4.216902 CGTATCGTGGATGGGTGTAGATTA 59.783 45.833 0.00 0.00 0.00 1.75
121 122 4.873746 ATCGTGGATGGGTGTAGATTAG 57.126 45.455 0.00 0.00 0.00 1.73
122 123 3.638860 TCGTGGATGGGTGTAGATTAGT 58.361 45.455 0.00 0.00 0.00 2.24
123 124 3.635373 TCGTGGATGGGTGTAGATTAGTC 59.365 47.826 0.00 0.00 0.00 2.59
124 125 3.243771 CGTGGATGGGTGTAGATTAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
125 126 3.967987 GTGGATGGGTGTAGATTAGTCCT 59.032 47.826 0.00 0.00 0.00 3.85
126 127 3.967326 TGGATGGGTGTAGATTAGTCCTG 59.033 47.826 0.00 0.00 0.00 3.86
127 128 3.325135 GGATGGGTGTAGATTAGTCCTGG 59.675 52.174 0.00 0.00 0.00 4.45
128 129 2.116238 TGGGTGTAGATTAGTCCTGGC 58.884 52.381 0.00 0.00 0.00 4.85
129 130 1.416772 GGGTGTAGATTAGTCCTGGCC 59.583 57.143 0.00 0.00 0.00 5.36
130 131 2.116238 GGTGTAGATTAGTCCTGGCCA 58.884 52.381 4.71 4.71 0.00 5.36
131 132 2.706190 GGTGTAGATTAGTCCTGGCCAT 59.294 50.000 5.51 0.00 0.00 4.40
132 133 3.495100 GGTGTAGATTAGTCCTGGCCATG 60.495 52.174 5.51 2.84 0.00 3.66
133 134 3.134804 GTGTAGATTAGTCCTGGCCATGT 59.865 47.826 5.51 0.00 0.00 3.21
134 135 3.134623 TGTAGATTAGTCCTGGCCATGTG 59.865 47.826 5.51 0.00 0.00 3.21
135 136 1.133976 AGATTAGTCCTGGCCATGTGC 60.134 52.381 5.51 1.32 40.16 4.57
136 137 0.625316 ATTAGTCCTGGCCATGTGCA 59.375 50.000 5.51 0.00 43.89 4.57
137 138 0.035152 TTAGTCCTGGCCATGTGCAG 60.035 55.000 5.51 0.00 43.89 4.41
138 139 2.541547 TAGTCCTGGCCATGTGCAGC 62.542 60.000 5.51 0.00 43.89 5.25
163 164 2.975799 GAACAGCCCCGCACGAAA 60.976 61.111 0.00 0.00 0.00 3.46
164 165 2.517402 AACAGCCCCGCACGAAAA 60.517 55.556 0.00 0.00 0.00 2.29
165 166 2.065906 GAACAGCCCCGCACGAAAAA 62.066 55.000 0.00 0.00 0.00 1.94
179 180 2.196502 AAAAACCCGACCCGGCTT 59.803 55.556 0.00 0.00 46.86 4.35
180 181 2.197605 AAAAACCCGACCCGGCTTG 61.198 57.895 0.00 0.00 46.86 4.01
181 182 4.653888 AAACCCGACCCGGCTTGG 62.654 66.667 0.00 0.00 46.86 3.61
192 193 3.834799 GGCTTGGCCTGATGCTGC 61.835 66.667 3.32 0.00 46.69 5.25
193 194 2.754658 GCTTGGCCTGATGCTGCT 60.755 61.111 3.32 0.00 40.92 4.24
194 195 2.772691 GCTTGGCCTGATGCTGCTC 61.773 63.158 3.32 0.00 40.92 4.26
195 196 2.044650 TTGGCCTGATGCTGCTCC 60.045 61.111 3.32 0.00 40.92 4.70
196 197 3.650298 TTGGCCTGATGCTGCTCCC 62.650 63.158 3.32 0.00 40.92 4.30
197 198 4.119363 GGCCTGATGCTGCTCCCA 62.119 66.667 0.00 0.00 40.92 4.37
198 199 2.516460 GCCTGATGCTGCTCCCAG 60.516 66.667 0.00 5.46 42.13 4.45
199 200 2.192443 CCTGATGCTGCTCCCAGG 59.808 66.667 16.53 16.53 39.54 4.45
200 201 2.516460 CTGATGCTGCTCCCAGGC 60.516 66.667 0.00 0.00 39.54 4.85
201 202 4.119363 TGATGCTGCTCCCAGGCC 62.119 66.667 0.00 0.00 39.54 5.19
222 223 2.462503 GCACGGGCGTAGATTTTGA 58.537 52.632 0.00 0.00 0.00 2.69
223 224 0.373716 GCACGGGCGTAGATTTTGAG 59.626 55.000 0.00 0.00 0.00 3.02
224 225 0.373716 CACGGGCGTAGATTTTGAGC 59.626 55.000 0.00 0.00 0.00 4.26
225 226 0.743345 ACGGGCGTAGATTTTGAGCC 60.743 55.000 0.00 0.00 46.51 4.70
227 228 2.014594 GGCGTAGATTTTGAGCCCG 58.985 57.895 0.00 0.00 41.81 6.13
228 229 0.461339 GGCGTAGATTTTGAGCCCGA 60.461 55.000 0.00 0.00 41.81 5.14
229 230 1.365699 GCGTAGATTTTGAGCCCGAA 58.634 50.000 0.00 0.00 0.00 4.30
230 231 1.327764 GCGTAGATTTTGAGCCCGAAG 59.672 52.381 0.00 0.00 0.00 3.79
259 260 3.138128 CCCGGGCCCGTCATTTTC 61.138 66.667 40.52 0.93 37.81 2.29
260 261 2.360600 CCGGGCCCGTCATTTTCA 60.361 61.111 40.52 0.00 37.81 2.69
261 262 2.696759 CCGGGCCCGTCATTTTCAC 61.697 63.158 40.52 0.00 37.81 3.18
262 263 1.969064 CGGGCCCGTCATTTTCACA 60.969 57.895 36.64 0.00 34.35 3.58
263 264 1.519751 CGGGCCCGTCATTTTCACAA 61.520 55.000 36.64 0.00 34.35 3.33
264 265 0.894835 GGGCCCGTCATTTTCACAAT 59.105 50.000 5.69 0.00 0.00 2.71
265 266 1.275010 GGGCCCGTCATTTTCACAATT 59.725 47.619 5.69 0.00 0.00 2.32
266 267 2.289382 GGGCCCGTCATTTTCACAATTT 60.289 45.455 5.69 0.00 0.00 1.82
267 268 2.993220 GGCCCGTCATTTTCACAATTTC 59.007 45.455 0.00 0.00 0.00 2.17
268 269 2.993220 GCCCGTCATTTTCACAATTTCC 59.007 45.455 0.00 0.00 0.00 3.13
269 270 3.306019 GCCCGTCATTTTCACAATTTCCT 60.306 43.478 0.00 0.00 0.00 3.36
270 271 4.082463 GCCCGTCATTTTCACAATTTCCTA 60.082 41.667 0.00 0.00 0.00 2.94
271 272 5.565834 GCCCGTCATTTTCACAATTTCCTAA 60.566 40.000 0.00 0.00 0.00 2.69
272 273 6.451393 CCCGTCATTTTCACAATTTCCTAAA 58.549 36.000 0.00 0.00 0.00 1.85
273 274 6.586082 CCCGTCATTTTCACAATTTCCTAAAG 59.414 38.462 0.00 0.00 0.00 1.85
274 275 6.586082 CCGTCATTTTCACAATTTCCTAAAGG 59.414 38.462 0.00 0.00 0.00 3.11
275 276 6.586082 CGTCATTTTCACAATTTCCTAAAGGG 59.414 38.462 0.00 0.00 35.41 3.95
276 277 6.873605 GTCATTTTCACAATTTCCTAAAGGGG 59.126 38.462 0.00 0.00 35.41 4.79
277 278 4.882842 TTTCACAATTTCCTAAAGGGGC 57.117 40.909 0.00 0.00 35.41 5.80
278 279 2.815158 TCACAATTTCCTAAAGGGGCC 58.185 47.619 0.00 0.00 35.41 5.80
279 280 1.831106 CACAATTTCCTAAAGGGGCCC 59.169 52.381 17.12 17.12 35.41 5.80
280 281 1.111277 CAATTTCCTAAAGGGGCCCG 58.889 55.000 18.95 1.73 35.41 6.13
281 282 0.032515 AATTTCCTAAAGGGGCCCGG 60.033 55.000 18.95 12.85 35.41 5.73
282 283 2.583298 ATTTCCTAAAGGGGCCCGGC 62.583 60.000 18.95 1.91 35.41 6.13
307 308 4.394712 CCAAGGCCCGACGAGCTT 62.395 66.667 0.00 0.00 0.00 3.74
308 309 2.358737 CAAGGCCCGACGAGCTTT 60.359 61.111 0.00 0.00 0.00 3.51
309 310 1.966451 CAAGGCCCGACGAGCTTTT 60.966 57.895 0.00 0.00 0.00 2.27
310 311 0.672401 CAAGGCCCGACGAGCTTTTA 60.672 55.000 0.00 0.00 0.00 1.52
311 312 0.672711 AAGGCCCGACGAGCTTTTAC 60.673 55.000 0.00 0.00 0.00 2.01
312 313 1.375013 GGCCCGACGAGCTTTTACA 60.375 57.895 0.16 0.00 0.00 2.41
313 314 1.632948 GGCCCGACGAGCTTTTACAC 61.633 60.000 0.16 0.00 0.00 2.90
314 315 1.952266 GCCCGACGAGCTTTTACACG 61.952 60.000 0.00 0.00 0.00 4.49
315 316 0.665369 CCCGACGAGCTTTTACACGT 60.665 55.000 0.00 0.00 39.58 4.49
316 317 0.433492 CCGACGAGCTTTTACACGTG 59.567 55.000 15.48 15.48 36.99 4.49
317 318 0.179282 CGACGAGCTTTTACACGTGC 60.179 55.000 17.22 0.00 36.99 5.34
318 319 0.179282 GACGAGCTTTTACACGTGCG 60.179 55.000 17.22 10.89 36.99 5.34
319 320 1.129809 CGAGCTTTTACACGTGCGG 59.870 57.895 17.22 2.49 0.00 5.69
320 321 1.495951 GAGCTTTTACACGTGCGGG 59.504 57.895 17.22 2.87 0.00 6.13
321 322 2.127003 GCTTTTACACGTGCGGGC 60.127 61.111 17.22 9.49 0.00 6.13
322 323 2.613506 GCTTTTACACGTGCGGGCT 61.614 57.895 17.22 0.00 0.00 5.19
323 324 1.206578 CTTTTACACGTGCGGGCTG 59.793 57.895 17.22 0.00 0.00 4.85
324 325 2.182614 CTTTTACACGTGCGGGCTGG 62.183 60.000 17.22 0.00 0.00 4.85
325 326 4.690719 TTACACGTGCGGGCTGGG 62.691 66.667 17.22 0.00 0.00 4.45
342 343 2.457759 GGATTGGGCCCAAAAACCA 58.542 52.632 40.00 18.51 39.55 3.67
343 344 0.324614 GGATTGGGCCCAAAAACCAG 59.675 55.000 40.00 0.00 39.55 4.00
344 345 0.324614 GATTGGGCCCAAAAACCAGG 59.675 55.000 40.00 0.00 39.55 4.45
345 346 1.778017 ATTGGGCCCAAAAACCAGGC 61.778 55.000 40.00 0.00 46.37 4.85
348 349 4.531351 GCCCAAAAACCAGGCCTA 57.469 55.556 3.98 0.00 41.00 3.93
349 350 2.753319 GCCCAAAAACCAGGCCTAA 58.247 52.632 3.98 0.00 41.00 2.69
350 351 1.275666 GCCCAAAAACCAGGCCTAAT 58.724 50.000 3.98 0.00 41.00 1.73
351 352 1.066215 GCCCAAAAACCAGGCCTAATG 60.066 52.381 3.98 0.00 41.00 1.90
352 353 1.554617 CCCAAAAACCAGGCCTAATGG 59.445 52.381 3.98 6.42 43.87 3.16
417 418 4.077184 CCGAAGCGTGGCCAGGTA 62.077 66.667 25.40 0.00 0.00 3.08
418 419 2.509336 CGAAGCGTGGCCAGGTAG 60.509 66.667 25.40 9.92 0.00 3.18
419 420 2.820037 GAAGCGTGGCCAGGTAGC 60.820 66.667 25.40 18.73 0.00 3.58
432 433 2.811431 CCAGGTAGCGTAGATCTCTCAG 59.189 54.545 0.00 0.00 0.00 3.35
442 445 1.276820 GATCTCTCAGCGCTGCATCG 61.277 60.000 32.44 18.98 0.00 3.84
460 463 2.400399 TCGTAGCTTGTTGAAACGAGG 58.600 47.619 11.51 0.00 40.16 4.63
464 467 4.804139 CGTAGCTTGTTGAAACGAGGATAT 59.196 41.667 11.51 0.00 40.16 1.63
465 468 5.975344 CGTAGCTTGTTGAAACGAGGATATA 59.025 40.000 11.51 0.00 40.16 0.86
519 522 3.444034 CACTTTCTCCTGATCGGTGTCTA 59.556 47.826 0.00 0.00 0.00 2.59
668 860 1.526887 CACTCACAAACACTAGTGGCG 59.473 52.381 26.12 15.76 36.53 5.69
669 861 1.411246 ACTCACAAACACTAGTGGCGA 59.589 47.619 26.12 13.21 36.43 5.54
718 922 5.419542 TCATAATTCAGGTGAAGACGGAAG 58.580 41.667 0.00 0.00 37.48 3.46
795 1001 2.425668 CAACGAAACCCAAACCTCACTT 59.574 45.455 0.00 0.00 0.00 3.16
841 1048 0.560688 TCAGTGGGGCCTTCCTTTTT 59.439 50.000 0.84 0.00 35.33 1.94
850 1057 0.783850 CCTTCCTTTTTCCCCTCCCA 59.216 55.000 0.00 0.00 0.00 4.37
1346 1570 3.839432 CTCCCCCTCTCGGTTCGC 61.839 72.222 0.00 0.00 0.00 4.70
1350 1575 1.003718 CCCCTCTCGGTTCGCTTTT 60.004 57.895 0.00 0.00 0.00 2.27
1430 1657 2.697431 TTTAGCATGGTTGTTCGCAC 57.303 45.000 1.12 0.00 0.00 5.34
1461 1688 2.684843 GCTGGTTGCTCCGAGCTTG 61.685 63.158 20.87 7.83 42.97 4.01
1578 1830 2.803492 GCAGAGATCGCGACCCTTAAAT 60.803 50.000 12.93 0.00 0.00 1.40
1622 1879 0.042131 TGGGGGACGATGTAGTTCCT 59.958 55.000 0.00 0.00 39.76 3.36
1667 1924 4.761739 TGTTTCTGAATTGGCCAGTAGAAG 59.238 41.667 5.11 1.83 33.57 2.85
1725 1982 4.734695 GCTTGCTATTTGGTGCCAGTTATC 60.735 45.833 0.00 0.00 0.00 1.75
1973 2605 1.506028 TTGAAGGGGTGGGGGATGTC 61.506 60.000 0.00 0.00 0.00 3.06
1974 2606 1.619669 GAAGGGGTGGGGGATGTCT 60.620 63.158 0.00 0.00 0.00 3.41
1977 2609 2.238701 GGGGTGGGGGATGTCTGTT 61.239 63.158 0.00 0.00 0.00 3.16
1979 2611 0.611896 GGGTGGGGGATGTCTGTTTG 60.612 60.000 0.00 0.00 0.00 2.93
1981 2613 1.353022 GGTGGGGGATGTCTGTTTGTA 59.647 52.381 0.00 0.00 0.00 2.41
1982 2614 2.224917 GGTGGGGGATGTCTGTTTGTAA 60.225 50.000 0.00 0.00 0.00 2.41
1983 2615 3.492337 GTGGGGGATGTCTGTTTGTAAA 58.508 45.455 0.00 0.00 0.00 2.01
2051 2702 5.185635 TCCTTTGCTATGTTATTTGCTTGCT 59.814 36.000 0.00 0.00 0.00 3.91
2079 2730 9.256477 TCTGTATTGGTTAGAGTTTATAATGCG 57.744 33.333 0.00 0.00 0.00 4.73
2112 2769 6.040842 ACCTTTGAAATCATATGGTGGTATGC 59.959 38.462 2.13 0.00 33.15 3.14
2179 4493 2.892374 TGTCTTCATCCACATAGTGCG 58.108 47.619 0.00 0.00 31.34 5.34
2208 4522 8.991275 ACATGGGGTTGATATTATGAAACATTT 58.009 29.630 0.00 0.00 0.00 2.32
2213 4527 9.683069 GGGTTGATATTATGAAACATTTAGCAG 57.317 33.333 0.00 0.00 0.00 4.24
2270 4669 9.325198 TGATTGTGTGATATATGGAGTTGTTAC 57.675 33.333 0.00 0.00 0.00 2.50
2342 4793 1.722464 CTTGCATGATTGTTTGGTGCG 59.278 47.619 0.00 0.00 38.58 5.34
2614 5071 6.758806 ACGGAGGGAGTAATTATATTGGTT 57.241 37.500 0.00 0.00 0.00 3.67
2615 5072 6.766429 ACGGAGGGAGTAATTATATTGGTTC 58.234 40.000 0.00 0.00 0.00 3.62
2616 5073 6.328148 ACGGAGGGAGTAATTATATTGGTTCA 59.672 38.462 0.00 0.00 0.00 3.18
2617 5074 7.017254 ACGGAGGGAGTAATTATATTGGTTCAT 59.983 37.037 0.00 0.00 0.00 2.57
2618 5075 7.334421 CGGAGGGAGTAATTATATTGGTTCATG 59.666 40.741 0.00 0.00 0.00 3.07
2619 5076 7.611855 GGAGGGAGTAATTATATTGGTTCATGG 59.388 40.741 0.00 0.00 0.00 3.66
2620 5077 6.948309 AGGGAGTAATTATATTGGTTCATGGC 59.052 38.462 0.00 0.00 0.00 4.40
2621 5078 6.719370 GGGAGTAATTATATTGGTTCATGGCA 59.281 38.462 0.00 0.00 0.00 4.92
2622 5079 7.094205 GGGAGTAATTATATTGGTTCATGGCAG 60.094 40.741 0.00 0.00 0.00 4.85
2623 5080 7.219484 AGTAATTATATTGGTTCATGGCAGC 57.781 36.000 0.00 0.00 0.00 5.25
2624 5081 6.777091 AGTAATTATATTGGTTCATGGCAGCA 59.223 34.615 0.00 0.00 0.00 4.41
2625 5082 6.482898 AATTATATTGGTTCATGGCAGCAA 57.517 33.333 11.34 11.34 36.15 3.91
2626 5083 5.518848 TTATATTGGTTCATGGCAGCAAG 57.481 39.130 13.54 0.00 35.22 4.01
2627 5084 0.899720 ATTGGTTCATGGCAGCAAGG 59.100 50.000 13.54 0.00 35.22 3.61
2628 5085 0.469705 TTGGTTCATGGCAGCAAGGT 60.470 50.000 6.40 0.00 0.00 3.50
2629 5086 0.469705 TGGTTCATGGCAGCAAGGTT 60.470 50.000 0.00 0.00 0.00 3.50
2630 5087 0.681175 GGTTCATGGCAGCAAGGTTT 59.319 50.000 0.00 0.00 0.00 3.27
2631 5088 1.070601 GGTTCATGGCAGCAAGGTTTT 59.929 47.619 0.00 0.00 0.00 2.43
2632 5089 2.485302 GGTTCATGGCAGCAAGGTTTTT 60.485 45.455 0.00 0.00 0.00 1.94
2633 5090 2.529780 TCATGGCAGCAAGGTTTTTG 57.470 45.000 0.00 0.00 0.00 2.44
2634 5091 2.037901 TCATGGCAGCAAGGTTTTTGA 58.962 42.857 0.00 0.00 0.00 2.69
2635 5092 2.036217 TCATGGCAGCAAGGTTTTTGAG 59.964 45.455 0.00 0.00 0.00 3.02
2636 5093 1.484038 TGGCAGCAAGGTTTTTGAGT 58.516 45.000 0.00 0.00 0.00 3.41
2637 5094 1.408702 TGGCAGCAAGGTTTTTGAGTC 59.591 47.619 0.00 0.00 0.00 3.36
2638 5095 1.600413 GGCAGCAAGGTTTTTGAGTCG 60.600 52.381 0.00 0.00 0.00 4.18
2639 5096 1.758783 CAGCAAGGTTTTTGAGTCGC 58.241 50.000 0.00 0.00 0.00 5.19
2640 5097 0.307760 AGCAAGGTTTTTGAGTCGCG 59.692 50.000 0.00 0.00 0.00 5.87
2641 5098 0.306533 GCAAGGTTTTTGAGTCGCGA 59.693 50.000 3.71 3.71 0.00 5.87
2642 5099 1.920272 GCAAGGTTTTTGAGTCGCGAC 60.920 52.381 31.30 31.30 0.00 5.19
2643 5100 1.597663 CAAGGTTTTTGAGTCGCGACT 59.402 47.619 39.89 39.89 45.84 4.18
2644 5101 1.949465 AGGTTTTTGAGTCGCGACTT 58.051 45.000 39.38 24.60 42.66 3.01
2645 5102 1.597663 AGGTTTTTGAGTCGCGACTTG 59.402 47.619 39.38 0.00 42.66 3.16
2646 5103 1.333791 GGTTTTTGAGTCGCGACTTGG 60.334 52.381 39.38 0.00 42.66 3.61
2647 5104 0.306533 TTTTTGAGTCGCGACTTGGC 59.693 50.000 39.38 27.60 42.66 4.52
2678 5135 4.227134 CCCTGCGGCTCAGCGTAT 62.227 66.667 0.00 0.00 41.50 3.06
2679 5136 2.728180 CCTGCGGCTCAGCGTATA 59.272 61.111 0.00 0.00 41.50 1.47
2680 5137 1.372251 CCTGCGGCTCAGCGTATAG 60.372 63.158 0.00 0.00 41.50 1.31
2681 5138 1.360551 CTGCGGCTCAGCGTATAGT 59.639 57.895 0.00 0.00 40.67 2.12
2682 5139 0.661780 CTGCGGCTCAGCGTATAGTC 60.662 60.000 0.00 0.00 40.67 2.59
2683 5140 1.726322 GCGGCTCAGCGTATAGTCG 60.726 63.158 0.00 3.25 43.47 4.18
2684 5141 1.939597 CGGCTCAGCGTATAGTCGA 59.060 57.895 0.00 0.00 43.30 4.20
2685 5142 0.384477 CGGCTCAGCGTATAGTCGAC 60.384 60.000 7.70 7.70 43.30 4.20
2686 5143 0.384477 GGCTCAGCGTATAGTCGACG 60.384 60.000 10.46 0.00 43.19 5.12
2687 5144 0.580578 GCTCAGCGTATAGTCGACGA 59.419 55.000 10.46 5.12 42.98 4.20
2688 5145 1.004185 GCTCAGCGTATAGTCGACGAA 60.004 52.381 10.46 2.69 42.98 3.85
2689 5146 2.538333 GCTCAGCGTATAGTCGACGAAA 60.538 50.000 10.46 0.00 42.98 3.46
2690 5147 3.281601 CTCAGCGTATAGTCGACGAAAG 58.718 50.000 10.46 3.33 42.98 2.62
2704 5161 3.048942 ACGAAAGTCGCTGTATAGTCG 57.951 47.619 0.00 0.00 45.12 4.18
2705 5162 1.774085 CGAAAGTCGCTGTATAGTCGC 59.226 52.381 0.00 0.00 31.14 5.19
2706 5163 2.117910 GAAAGTCGCTGTATAGTCGCC 58.882 52.381 0.00 0.00 0.00 5.54
2707 5164 1.100510 AAGTCGCTGTATAGTCGCCA 58.899 50.000 0.00 0.00 0.00 5.69
2708 5165 1.319541 AGTCGCTGTATAGTCGCCAT 58.680 50.000 0.00 0.00 0.00 4.40
2709 5166 2.501261 AGTCGCTGTATAGTCGCCATA 58.499 47.619 0.00 0.00 0.00 2.74
2710 5167 2.882761 AGTCGCTGTATAGTCGCCATAA 59.117 45.455 0.00 0.00 0.00 1.90
2711 5168 3.058155 AGTCGCTGTATAGTCGCCATAAG 60.058 47.826 0.00 0.00 0.00 1.73
2712 5169 2.882761 TCGCTGTATAGTCGCCATAAGT 59.117 45.455 0.00 0.00 0.00 2.24
2713 5170 3.058432 TCGCTGTATAGTCGCCATAAGTC 60.058 47.826 0.00 0.00 0.00 3.01
2714 5171 3.235195 GCTGTATAGTCGCCATAAGTCG 58.765 50.000 0.00 0.00 0.00 4.18
2715 5172 3.235195 CTGTATAGTCGCCATAAGTCGC 58.765 50.000 0.00 0.00 0.00 5.19
2716 5173 2.882761 TGTATAGTCGCCATAAGTCGCT 59.117 45.455 0.00 0.00 0.00 4.93
2717 5174 2.423926 ATAGTCGCCATAAGTCGCTG 57.576 50.000 0.00 0.00 0.00 5.18
2718 5175 1.100510 TAGTCGCCATAAGTCGCTGT 58.899 50.000 0.00 0.00 0.00 4.40
2719 5176 1.100510 AGTCGCCATAAGTCGCTGTA 58.899 50.000 0.00 0.00 0.00 2.74
2720 5177 1.681793 AGTCGCCATAAGTCGCTGTAT 59.318 47.619 0.00 0.00 0.00 2.29
2721 5178 2.882761 AGTCGCCATAAGTCGCTGTATA 59.117 45.455 0.00 0.00 0.00 1.47
2722 5179 3.058155 AGTCGCCATAAGTCGCTGTATAG 60.058 47.826 0.00 0.00 0.00 1.31
2723 5180 2.882761 TCGCCATAAGTCGCTGTATAGT 59.117 45.455 0.00 0.00 0.00 2.12
2724 5181 3.058432 TCGCCATAAGTCGCTGTATAGTC 60.058 47.826 0.00 0.00 0.00 2.59
2725 5182 3.235195 GCCATAAGTCGCTGTATAGTCG 58.765 50.000 0.00 0.00 0.00 4.18
2726 5183 3.235195 CCATAAGTCGCTGTATAGTCGC 58.765 50.000 0.00 0.00 0.00 5.19
2732 5189 3.059898 GCTGTATAGTCGCGAGTCG 57.940 57.895 21.77 8.54 40.15 4.18
2744 5201 2.903172 CGAGTCGCGCTGATTTTTG 58.097 52.632 5.56 0.00 0.00 2.44
2745 5202 0.519175 CGAGTCGCGCTGATTTTTGG 60.519 55.000 5.56 0.00 0.00 3.28
2746 5203 0.796312 GAGTCGCGCTGATTTTTGGA 59.204 50.000 5.56 0.00 0.00 3.53
2747 5204 1.196808 GAGTCGCGCTGATTTTTGGAA 59.803 47.619 5.56 0.00 0.00 3.53
2748 5205 1.606668 AGTCGCGCTGATTTTTGGAAA 59.393 42.857 5.56 0.00 0.00 3.13
2749 5206 2.034053 AGTCGCGCTGATTTTTGGAAAA 59.966 40.909 5.56 0.00 0.00 2.29
2750 5207 2.153057 GTCGCGCTGATTTTTGGAAAAC 59.847 45.455 5.56 0.00 0.00 2.43
2751 5208 1.122323 CGCGCTGATTTTTGGAAAACG 59.878 47.619 5.56 0.00 0.00 3.60
2752 5209 2.389998 GCGCTGATTTTTGGAAAACGA 58.610 42.857 0.00 0.00 0.00 3.85
2753 5210 2.153057 GCGCTGATTTTTGGAAAACGAC 59.847 45.455 0.00 0.00 0.00 4.34
2754 5211 3.628017 CGCTGATTTTTGGAAAACGACT 58.372 40.909 0.00 0.00 0.00 4.18
2755 5212 4.041723 CGCTGATTTTTGGAAAACGACTT 58.958 39.130 0.00 0.00 0.00 3.01
2756 5213 4.085619 CGCTGATTTTTGGAAAACGACTTG 60.086 41.667 0.00 0.00 0.00 3.16
2757 5214 4.209080 GCTGATTTTTGGAAAACGACTTGG 59.791 41.667 0.00 0.00 0.00 3.61
2758 5215 4.116238 TGATTTTTGGAAAACGACTTGGC 58.884 39.130 0.00 0.00 0.00 4.52
2759 5216 2.196295 TTTTGGAAAACGACTTGGCG 57.804 45.000 0.00 0.00 37.29 5.69
2760 5217 1.380524 TTTGGAAAACGACTTGGCGA 58.619 45.000 1.78 0.00 34.83 5.54
2761 5218 1.600023 TTGGAAAACGACTTGGCGAT 58.400 45.000 1.78 0.00 34.83 4.58
2762 5219 1.600023 TGGAAAACGACTTGGCGATT 58.400 45.000 1.78 0.00 34.83 3.34
2763 5220 2.768698 TGGAAAACGACTTGGCGATTA 58.231 42.857 1.78 0.00 34.83 1.75
2764 5221 2.739913 TGGAAAACGACTTGGCGATTAG 59.260 45.455 1.78 0.00 34.83 1.73
2765 5222 2.740447 GGAAAACGACTTGGCGATTAGT 59.260 45.455 1.78 0.00 34.83 2.24
2766 5223 3.181523 GGAAAACGACTTGGCGATTAGTC 60.182 47.826 1.78 0.00 37.90 2.59
2778 5235 3.800929 CGATTAGTCGGCGACTATACA 57.199 47.619 40.30 29.65 43.45 2.29
2779 5236 3.734031 CGATTAGTCGGCGACTATACAG 58.266 50.000 40.30 28.83 43.45 2.74
2780 5237 3.490399 GATTAGTCGGCGACTATACAGC 58.510 50.000 40.30 28.40 43.45 4.40
2781 5238 0.863799 TAGTCGGCGACTATACAGCG 59.136 55.000 37.84 0.00 41.51 5.18
2782 5239 0.812811 AGTCGGCGACTATACAGCGA 60.813 55.000 38.49 0.00 41.51 4.93
2783 5240 0.656786 GTCGGCGACTATACAGCGAC 60.657 60.000 31.15 1.70 0.00 5.19
2784 5241 0.812811 TCGGCGACTATACAGCGACT 60.813 55.000 4.99 0.00 30.19 4.18
2785 5242 0.863799 CGGCGACTATACAGCGACTA 59.136 55.000 0.00 0.00 30.19 2.59
2786 5243 1.262417 CGGCGACTATACAGCGACTAA 59.738 52.381 0.00 0.00 30.19 2.24
2787 5244 2.095869 CGGCGACTATACAGCGACTAAT 60.096 50.000 0.00 0.00 30.19 1.73
2788 5245 3.490399 GGCGACTATACAGCGACTAATC 58.510 50.000 0.00 0.00 0.00 1.75
2789 5246 3.058432 GGCGACTATACAGCGACTAATCA 60.058 47.826 0.00 0.00 0.00 2.57
2790 5247 4.152526 GCGACTATACAGCGACTAATCAG 58.847 47.826 0.00 0.00 0.00 2.90
2791 5248 4.152526 CGACTATACAGCGACTAATCAGC 58.847 47.826 0.00 0.00 0.00 4.26
2792 5249 4.148563 ACTATACAGCGACTAATCAGCG 57.851 45.455 0.00 0.00 35.78 5.18
2793 5250 3.813724 ACTATACAGCGACTAATCAGCGA 59.186 43.478 0.00 0.00 35.78 4.93
2794 5251 2.470196 TACAGCGACTAATCAGCGAC 57.530 50.000 0.00 0.00 35.78 5.19
2795 5252 0.811915 ACAGCGACTAATCAGCGACT 59.188 50.000 0.00 0.00 35.78 4.18
2796 5253 1.202200 ACAGCGACTAATCAGCGACTC 60.202 52.381 0.00 0.00 35.78 3.36
2797 5254 1.095600 AGCGACTAATCAGCGACTCA 58.904 50.000 0.00 0.00 35.78 3.41
2798 5255 1.472878 AGCGACTAATCAGCGACTCAA 59.527 47.619 0.00 0.00 35.78 3.02
2799 5256 2.094700 AGCGACTAATCAGCGACTCAAA 60.095 45.455 0.00 0.00 35.78 2.69
2800 5257 2.666508 GCGACTAATCAGCGACTCAAAA 59.333 45.455 0.00 0.00 0.00 2.44
2801 5258 3.122948 GCGACTAATCAGCGACTCAAAAA 59.877 43.478 0.00 0.00 0.00 1.94
2802 5259 4.629065 CGACTAATCAGCGACTCAAAAAC 58.371 43.478 0.00 0.00 0.00 2.43
2803 5260 4.434330 CGACTAATCAGCGACTCAAAAACC 60.434 45.833 0.00 0.00 0.00 3.27
2804 5261 4.385825 ACTAATCAGCGACTCAAAAACCA 58.614 39.130 0.00 0.00 0.00 3.67
2805 5262 5.003804 ACTAATCAGCGACTCAAAAACCAT 58.996 37.500 0.00 0.00 0.00 3.55
2806 5263 3.837213 ATCAGCGACTCAAAAACCATG 57.163 42.857 0.00 0.00 0.00 3.66
2845 5310 3.071312 TGAATGAAAAGCATGCCCAACTT 59.929 39.130 15.66 0.00 37.28 2.66
2850 5316 3.439857 AAAGCATGCCCAACTTCTAGA 57.560 42.857 15.66 0.00 0.00 2.43
2996 5627 4.065088 TCACTTTGCTAGTTACTGCCTTG 58.935 43.478 0.00 0.00 33.85 3.61
3269 5936 4.371855 TGCTAACGAGTGGTCTATTCTG 57.628 45.455 0.00 0.00 0.00 3.02
3400 6073 6.237384 GCTGCAATGAAATAAACATTCAGTCG 60.237 38.462 3.27 0.00 39.92 4.18
3572 6248 2.178580 CCTGGATCTCCTGAGGCTATC 58.821 57.143 0.00 0.00 37.15 2.08
3861 6783 1.138266 TCAATACCTTCCTGTAGCGCC 59.862 52.381 2.29 0.00 0.00 6.53
3961 6884 4.100035 CCTGATGATGTGCCTGAGTTACTA 59.900 45.833 0.00 0.00 0.00 1.82
3995 6918 1.442769 GCAAAGAGGAGCGATTGTGA 58.557 50.000 0.00 0.00 0.00 3.58
4052 6976 9.962809 ATTAATCCATTCCATGTGTTGATTTTT 57.037 25.926 0.00 0.00 0.00 1.94
4125 7052 4.754618 TGTTGTGTCATGTCATTGAGTACC 59.245 41.667 0.00 0.00 0.00 3.34
4179 7106 3.157881 TGCTATTCTATCTGGACTCGGG 58.842 50.000 0.00 0.00 0.00 5.14
4197 7130 3.006003 TCGGGCGTGCTTATACATCATAA 59.994 43.478 0.00 0.00 0.00 1.90
4297 7410 7.338800 AGCACTGGTTAATCTATTTCCAATG 57.661 36.000 0.00 0.00 0.00 2.82
4298 7411 7.118723 AGCACTGGTTAATCTATTTCCAATGA 58.881 34.615 10.18 0.00 28.58 2.57
4299 7412 7.781693 AGCACTGGTTAATCTATTTCCAATGAT 59.218 33.333 10.18 3.93 28.58 2.45
4334 7449 8.594550 TCAAGTAGCTTAATCTTGAGTTAAGGT 58.405 33.333 14.64 12.91 46.02 3.50
4369 7484 3.578282 TGGAAGTCTGTCACTGATGCTTA 59.422 43.478 0.00 0.00 34.56 3.09
4602 11041 4.935352 TGAAAAATGACCTTTCTGTGGG 57.065 40.909 0.00 0.00 34.51 4.61
4679 11120 5.123186 TGTTGTTTAAAGCCCTGATATGTCG 59.877 40.000 0.00 0.00 0.00 4.35
4689 11130 3.804325 CCCTGATATGTCGTGTTCATGTC 59.196 47.826 0.00 0.00 35.19 3.06
4937 11408 2.123982 CCAGGGCAATGGAGGAGC 60.124 66.667 1.91 0.00 43.57 4.70
4938 11409 2.679092 CAGGGCAATGGAGGAGCA 59.321 61.111 0.00 0.00 0.00 4.26
5124 11598 0.038526 GGTCTGACACCTACACCACG 60.039 60.000 10.38 0.00 42.84 4.94
5409 12024 7.097192 GCTATATGTGTTGTAGCAAGGCTATA 58.903 38.462 0.78 0.00 43.30 1.31
5686 12325 5.471556 AAAAACATTGCATGATCTGTCCA 57.528 34.783 0.00 0.00 0.00 4.02
5687 12326 4.713824 AAACATTGCATGATCTGTCCAG 57.286 40.909 0.00 0.00 0.00 3.86
5688 12327 3.639672 ACATTGCATGATCTGTCCAGA 57.360 42.857 0.00 0.00 42.37 3.86
5689 12328 3.959293 ACATTGCATGATCTGTCCAGAA 58.041 40.909 0.00 0.00 41.36 3.02
5690 12329 4.533815 ACATTGCATGATCTGTCCAGAAT 58.466 39.130 0.00 0.00 41.36 2.40
5691 12330 4.579340 ACATTGCATGATCTGTCCAGAATC 59.421 41.667 0.00 1.37 41.36 2.52
5692 12331 3.204306 TGCATGATCTGTCCAGAATCC 57.796 47.619 0.00 0.00 41.36 3.01
5693 12332 2.506644 TGCATGATCTGTCCAGAATCCA 59.493 45.455 0.00 1.19 41.36 3.41
5694 12333 3.137728 TGCATGATCTGTCCAGAATCCAT 59.862 43.478 0.00 3.35 41.36 3.41
5695 12334 4.348754 TGCATGATCTGTCCAGAATCCATA 59.651 41.667 0.00 0.00 41.36 2.74
5696 12335 5.013808 TGCATGATCTGTCCAGAATCCATAT 59.986 40.000 0.00 0.00 41.36 1.78
5697 12336 5.944599 GCATGATCTGTCCAGAATCCATATT 59.055 40.000 0.00 0.00 41.36 1.28
5701 12340 6.769341 TGATCTGTCCAGAATCCATATTTGTG 59.231 38.462 0.37 0.00 41.36 3.33
5732 12371 3.751175 GGCAAACACTAACATGACTAGCA 59.249 43.478 0.00 0.00 0.00 3.49
5794 12433 7.625682 AGATTGGGTCTAATCCTAAAGAACTCT 59.374 37.037 3.89 0.00 37.70 3.24
5831 12471 4.280425 TGGAAGCTGTTTGATTATGTTGCA 59.720 37.500 0.00 0.00 0.00 4.08
5896 12542 1.669115 GCTGGATCGTGTGTGCAGT 60.669 57.895 0.00 0.00 37.36 4.40
5952 12600 6.183360 GGCATAGTGAAATGAGCAATCTCTTT 60.183 38.462 0.00 0.00 40.03 2.52
5979 12627 1.478916 TCAGACCAGACGTTGTTGTCA 59.521 47.619 9.92 0.00 41.41 3.58
5980 12628 1.860950 CAGACCAGACGTTGTTGTCAG 59.139 52.381 9.92 0.73 41.41 3.51
6028 12677 6.147985 TGCTTACGCATGTATCACAGTTAAAA 59.852 34.615 0.00 0.00 42.25 1.52
6031 12680 6.985188 ACGCATGTATCACAGTTAAAATCT 57.015 33.333 0.00 0.00 0.00 2.40
6033 12682 7.464358 ACGCATGTATCACAGTTAAAATCTTC 58.536 34.615 0.00 0.00 0.00 2.87
6034 12683 7.119116 ACGCATGTATCACAGTTAAAATCTTCA 59.881 33.333 0.00 0.00 0.00 3.02
6035 12684 8.124823 CGCATGTATCACAGTTAAAATCTTCAT 58.875 33.333 0.00 0.00 0.00 2.57
6036 12685 9.793252 GCATGTATCACAGTTAAAATCTTCATT 57.207 29.630 0.00 0.00 0.00 2.57
6058 12707 4.383774 TTTGATACGTGCAAAAGAGACG 57.616 40.909 13.73 0.00 39.03 4.18
6079 12728 2.774439 ACACAGACGTTTCCAAATGC 57.226 45.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.220602 GGAACACCTTGCATTCCAATTACT 59.779 41.667 10.52 0.00 41.40 2.24
1 2 4.021544 TGGAACACCTTGCATTCCAATTAC 60.022 41.667 14.84 0.00 46.93 1.89
2 3 4.155709 TGGAACACCTTGCATTCCAATTA 58.844 39.130 14.84 0.00 46.93 1.40
3 4 2.971330 TGGAACACCTTGCATTCCAATT 59.029 40.909 14.84 0.00 46.93 2.32
5 6 2.079170 TGGAACACCTTGCATTCCAA 57.921 45.000 14.84 1.33 46.93 3.53
7 8 0.890683 CCTGGAACACCTTGCATTCC 59.109 55.000 8.78 8.78 42.00 3.01
8 9 1.541588 GACCTGGAACACCTTGCATTC 59.458 52.381 0.00 0.00 0.00 2.67
11 12 0.257328 TTGACCTGGAACACCTTGCA 59.743 50.000 0.00 0.00 0.00 4.08
12 13 1.398692 TTTGACCTGGAACACCTTGC 58.601 50.000 0.00 0.00 0.00 4.01
13 14 5.782893 TTATTTTGACCTGGAACACCTTG 57.217 39.130 0.00 0.00 0.00 3.61
14 15 8.664669 ATTATTATTTTGACCTGGAACACCTT 57.335 30.769 0.00 0.00 0.00 3.50
15 16 9.762381 TTATTATTATTTTGACCTGGAACACCT 57.238 29.630 0.00 0.00 0.00 4.00
36 37 9.384764 TCGAACAACATGTCAACCATATTATTA 57.615 29.630 0.00 0.00 30.71 0.98
37 38 8.275015 TCGAACAACATGTCAACCATATTATT 57.725 30.769 0.00 0.00 30.71 1.40
38 39 7.857734 TCGAACAACATGTCAACCATATTAT 57.142 32.000 0.00 0.00 30.71 1.28
39 40 7.857734 ATCGAACAACATGTCAACCATATTA 57.142 32.000 0.00 0.00 30.71 0.98
40 41 6.757897 ATCGAACAACATGTCAACCATATT 57.242 33.333 0.00 0.00 30.71 1.28
41 42 6.019075 CGTATCGAACAACATGTCAACCATAT 60.019 38.462 0.00 0.00 30.71 1.78
42 43 5.289917 CGTATCGAACAACATGTCAACCATA 59.710 40.000 0.00 0.00 30.71 2.74
43 44 4.092821 CGTATCGAACAACATGTCAACCAT 59.907 41.667 0.00 0.00 0.00 3.55
44 45 3.430556 CGTATCGAACAACATGTCAACCA 59.569 43.478 0.00 0.00 0.00 3.67
45 46 3.723835 GCGTATCGAACAACATGTCAACC 60.724 47.826 0.00 0.00 0.00 3.77
46 47 3.404564 GCGTATCGAACAACATGTCAAC 58.595 45.455 0.00 0.00 0.00 3.18
47 48 2.091432 CGCGTATCGAACAACATGTCAA 59.909 45.455 0.00 0.00 41.67 3.18
48 49 1.651631 CGCGTATCGAACAACATGTCA 59.348 47.619 0.00 0.00 41.67 3.58
49 50 1.589022 GCGCGTATCGAACAACATGTC 60.589 52.381 8.43 0.00 41.67 3.06
50 51 0.368907 GCGCGTATCGAACAACATGT 59.631 50.000 8.43 0.00 41.67 3.21
51 52 0.315059 GGCGCGTATCGAACAACATG 60.315 55.000 8.43 0.00 41.67 3.21
52 53 1.426041 GGGCGCGTATCGAACAACAT 61.426 55.000 8.43 0.00 41.67 2.71
53 54 2.095847 GGGCGCGTATCGAACAACA 61.096 57.895 8.43 0.00 41.67 3.33
54 55 2.699212 GGGCGCGTATCGAACAAC 59.301 61.111 8.43 0.00 41.67 3.32
55 56 2.881827 CGGGCGCGTATCGAACAA 60.882 61.111 15.94 0.00 41.67 2.83
56 57 4.118995 ACGGGCGCGTATCGAACA 62.119 61.111 28.50 0.00 41.67 3.18
57 58 3.613702 CACGGGCGCGTATCGAAC 61.614 66.667 29.04 0.00 41.67 3.95
58 59 4.858433 CCACGGGCGCGTATCGAA 62.858 66.667 29.04 0.00 41.67 3.71
61 62 2.340453 TAACTCCACGGGCGCGTATC 62.340 60.000 29.04 0.00 0.00 2.24
62 63 1.741327 ATAACTCCACGGGCGCGTAT 61.741 55.000 29.04 14.58 0.00 3.06
63 64 1.100463 TATAACTCCACGGGCGCGTA 61.100 55.000 29.04 13.62 0.00 4.42
64 65 2.345880 CTATAACTCCACGGGCGCGT 62.346 60.000 24.30 24.30 0.00 6.01
65 66 1.660575 CTATAACTCCACGGGCGCG 60.661 63.158 22.69 22.69 0.00 6.86
66 67 1.300697 CCTATAACTCCACGGGCGC 60.301 63.158 0.00 0.00 0.00 6.53
67 68 1.366366 CCCTATAACTCCACGGGCG 59.634 63.158 0.00 0.00 0.00 6.13
68 69 1.752833 CCCCTATAACTCCACGGGC 59.247 63.158 0.00 0.00 33.47 6.13
69 70 1.752833 GCCCCTATAACTCCACGGG 59.247 63.158 0.00 0.00 34.62 5.28
70 71 1.752833 GGCCCCTATAACTCCACGG 59.247 63.158 0.00 0.00 0.00 4.94
71 72 1.366366 CGGCCCCTATAACTCCACG 59.634 63.158 0.00 0.00 0.00 4.94
72 73 1.752833 CCGGCCCCTATAACTCCAC 59.247 63.158 0.00 0.00 0.00 4.02
73 74 1.460689 CCCGGCCCCTATAACTCCA 60.461 63.158 0.00 0.00 0.00 3.86
74 75 0.546988 ATCCCGGCCCCTATAACTCC 60.547 60.000 0.00 0.00 0.00 3.85
75 76 1.359168 AATCCCGGCCCCTATAACTC 58.641 55.000 0.00 0.00 0.00 3.01
76 77 1.423921 CAAATCCCGGCCCCTATAACT 59.576 52.381 0.00 0.00 0.00 2.24
77 78 1.905637 CAAATCCCGGCCCCTATAAC 58.094 55.000 0.00 0.00 0.00 1.89
78 79 0.111639 GCAAATCCCGGCCCCTATAA 59.888 55.000 0.00 0.00 0.00 0.98
79 80 1.765074 GCAAATCCCGGCCCCTATA 59.235 57.895 0.00 0.00 0.00 1.31
80 81 2.520968 GCAAATCCCGGCCCCTAT 59.479 61.111 0.00 0.00 0.00 2.57
81 82 4.183858 CGCAAATCCCGGCCCCTA 62.184 66.667 0.00 0.00 0.00 3.53
83 84 3.785122 ATACGCAAATCCCGGCCCC 62.785 63.158 0.00 0.00 0.00 5.80
84 85 2.203294 ATACGCAAATCCCGGCCC 60.203 61.111 0.00 0.00 0.00 5.80
85 86 2.604174 CGATACGCAAATCCCGGCC 61.604 63.158 0.00 0.00 0.00 6.13
86 87 1.885850 ACGATACGCAAATCCCGGC 60.886 57.895 0.00 0.00 0.00 6.13
87 88 1.495584 CCACGATACGCAAATCCCGG 61.496 60.000 0.00 0.00 0.00 5.73
88 89 0.528901 TCCACGATACGCAAATCCCG 60.529 55.000 0.00 0.00 0.00 5.14
89 90 1.531149 CATCCACGATACGCAAATCCC 59.469 52.381 0.00 0.00 0.00 3.85
90 91 1.531149 CCATCCACGATACGCAAATCC 59.469 52.381 0.00 0.00 0.00 3.01
91 92 1.531149 CCCATCCACGATACGCAAATC 59.469 52.381 0.00 0.00 0.00 2.17
92 93 1.134220 ACCCATCCACGATACGCAAAT 60.134 47.619 0.00 0.00 0.00 2.32
93 94 0.250793 ACCCATCCACGATACGCAAA 59.749 50.000 0.00 0.00 0.00 3.68
94 95 0.461163 CACCCATCCACGATACGCAA 60.461 55.000 0.00 0.00 0.00 4.85
95 96 1.142965 CACCCATCCACGATACGCA 59.857 57.895 0.00 0.00 0.00 5.24
96 97 0.386476 TACACCCATCCACGATACGC 59.614 55.000 0.00 0.00 0.00 4.42
97 98 1.951602 TCTACACCCATCCACGATACG 59.048 52.381 0.00 0.00 0.00 3.06
98 99 4.602340 AATCTACACCCATCCACGATAC 57.398 45.455 0.00 0.00 0.00 2.24
99 100 5.391256 ACTAATCTACACCCATCCACGATA 58.609 41.667 0.00 0.00 0.00 2.92
100 101 4.223953 ACTAATCTACACCCATCCACGAT 58.776 43.478 0.00 0.00 0.00 3.73
101 102 3.635373 GACTAATCTACACCCATCCACGA 59.365 47.826 0.00 0.00 0.00 4.35
102 103 3.243771 GGACTAATCTACACCCATCCACG 60.244 52.174 0.00 0.00 0.00 4.94
103 104 3.967987 AGGACTAATCTACACCCATCCAC 59.032 47.826 0.00 0.00 0.00 4.02
104 105 3.967326 CAGGACTAATCTACACCCATCCA 59.033 47.826 0.00 0.00 0.00 3.41
105 106 3.325135 CCAGGACTAATCTACACCCATCC 59.675 52.174 0.00 0.00 0.00 3.51
106 107 3.244249 GCCAGGACTAATCTACACCCATC 60.244 52.174 0.00 0.00 0.00 3.51
107 108 2.706190 GCCAGGACTAATCTACACCCAT 59.294 50.000 0.00 0.00 0.00 4.00
108 109 2.116238 GCCAGGACTAATCTACACCCA 58.884 52.381 0.00 0.00 0.00 4.51
109 110 1.416772 GGCCAGGACTAATCTACACCC 59.583 57.143 0.00 0.00 0.00 4.61
110 111 2.116238 TGGCCAGGACTAATCTACACC 58.884 52.381 0.00 0.00 0.00 4.16
111 112 3.134804 ACATGGCCAGGACTAATCTACAC 59.865 47.826 26.87 0.00 0.00 2.90
112 113 3.134623 CACATGGCCAGGACTAATCTACA 59.865 47.826 26.87 0.00 0.00 2.74
113 114 3.733337 CACATGGCCAGGACTAATCTAC 58.267 50.000 26.87 0.00 0.00 2.59
114 115 2.104792 GCACATGGCCAGGACTAATCTA 59.895 50.000 26.87 0.00 36.11 1.98
115 116 1.133976 GCACATGGCCAGGACTAATCT 60.134 52.381 26.87 0.00 36.11 2.40
116 117 1.312815 GCACATGGCCAGGACTAATC 58.687 55.000 26.87 2.10 36.11 1.75
117 118 0.625316 TGCACATGGCCAGGACTAAT 59.375 50.000 26.87 0.00 43.89 1.73
118 119 0.035152 CTGCACATGGCCAGGACTAA 60.035 55.000 26.87 5.54 43.89 2.24
119 120 1.603842 CTGCACATGGCCAGGACTA 59.396 57.895 26.87 8.20 43.89 2.59
120 121 2.353958 CTGCACATGGCCAGGACT 59.646 61.111 26.87 0.00 43.89 3.85
121 122 3.446570 GCTGCACATGGCCAGGAC 61.447 66.667 26.87 16.09 43.89 3.85
122 123 4.746309 GGCTGCACATGGCCAGGA 62.746 66.667 26.87 4.11 46.84 3.86
146 147 2.065906 TTTTTCGTGCGGGGCTGTTC 62.066 55.000 0.00 0.00 0.00 3.18
147 148 2.122167 TTTTTCGTGCGGGGCTGTT 61.122 52.632 0.00 0.00 0.00 3.16
148 149 2.517402 TTTTTCGTGCGGGGCTGT 60.517 55.556 0.00 0.00 0.00 4.40
176 177 2.754658 AGCAGCATCAGGCCAAGC 60.755 61.111 5.01 2.59 46.50 4.01
177 178 2.119655 GGAGCAGCATCAGGCCAAG 61.120 63.158 5.01 0.00 46.50 3.61
178 179 2.044650 GGAGCAGCATCAGGCCAA 60.045 61.111 5.01 0.00 46.50 4.52
179 180 4.119363 GGGAGCAGCATCAGGCCA 62.119 66.667 5.01 0.00 46.50 5.36
180 181 4.119363 TGGGAGCAGCATCAGGCC 62.119 66.667 0.00 0.00 46.50 5.19
181 182 2.516460 CTGGGAGCAGCATCAGGC 60.516 66.667 0.00 0.00 45.30 4.85
182 183 2.192443 CCTGGGAGCAGCATCAGG 59.808 66.667 12.38 12.38 40.46 3.86
183 184 2.516460 GCCTGGGAGCAGCATCAG 60.516 66.667 0.00 0.00 0.00 2.90
184 185 4.119363 GGCCTGGGAGCAGCATCA 62.119 66.667 0.00 0.00 0.00 3.07
201 202 1.082117 AAAATCTACGCCCGTGCTCG 61.082 55.000 3.22 0.14 34.43 5.03
202 203 0.373716 CAAAATCTACGCCCGTGCTC 59.626 55.000 3.22 0.00 34.43 4.26
203 204 0.036765 TCAAAATCTACGCCCGTGCT 60.037 50.000 3.22 0.00 34.43 4.40
204 205 0.373716 CTCAAAATCTACGCCCGTGC 59.626 55.000 3.22 0.00 0.00 5.34
205 206 0.373716 GCTCAAAATCTACGCCCGTG 59.626 55.000 3.22 0.00 0.00 4.94
206 207 0.743345 GGCTCAAAATCTACGCCCGT 60.743 55.000 0.00 0.00 34.75 5.28
207 208 2.014594 GGCTCAAAATCTACGCCCG 58.985 57.895 0.00 0.00 34.75 6.13
209 210 0.461339 TCGGGCTCAAAATCTACGCC 60.461 55.000 0.00 0.00 39.98 5.68
210 211 1.327764 CTTCGGGCTCAAAATCTACGC 59.672 52.381 0.00 0.00 0.00 4.42
211 212 1.933853 CCTTCGGGCTCAAAATCTACG 59.066 52.381 0.00 0.00 0.00 3.51
212 213 2.937149 GTCCTTCGGGCTCAAAATCTAC 59.063 50.000 0.00 0.00 34.44 2.59
213 214 2.418197 CGTCCTTCGGGCTCAAAATCTA 60.418 50.000 0.00 0.00 35.71 1.98
214 215 1.676014 CGTCCTTCGGGCTCAAAATCT 60.676 52.381 0.00 0.00 35.71 2.40
215 216 0.727398 CGTCCTTCGGGCTCAAAATC 59.273 55.000 0.00 0.00 35.71 2.17
216 217 2.854522 CGTCCTTCGGGCTCAAAAT 58.145 52.632 0.00 0.00 35.71 1.82
217 218 4.371975 CGTCCTTCGGGCTCAAAA 57.628 55.556 0.00 0.00 35.71 2.44
242 243 3.138128 GAAAATGACGGGCCCGGG 61.138 66.667 44.99 22.37 44.69 5.73
243 244 2.360600 TGAAAATGACGGGCCCGG 60.361 61.111 44.99 28.13 44.69 5.73
244 245 1.519751 TTGTGAAAATGACGGGCCCG 61.520 55.000 42.17 42.17 46.03 6.13
245 246 0.894835 ATTGTGAAAATGACGGGCCC 59.105 50.000 13.57 13.57 0.00 5.80
246 247 2.741759 AATTGTGAAAATGACGGGCC 57.258 45.000 0.00 0.00 0.00 5.80
247 248 2.993220 GGAAATTGTGAAAATGACGGGC 59.007 45.455 0.00 0.00 0.00 6.13
248 249 4.519540 AGGAAATTGTGAAAATGACGGG 57.480 40.909 0.00 0.00 0.00 5.28
249 250 6.586082 CCTTTAGGAAATTGTGAAAATGACGG 59.414 38.462 0.00 0.00 37.39 4.79
250 251 6.586082 CCCTTTAGGAAATTGTGAAAATGACG 59.414 38.462 0.00 0.00 38.24 4.35
251 252 6.873605 CCCCTTTAGGAAATTGTGAAAATGAC 59.126 38.462 0.00 0.00 38.24 3.06
252 253 6.519891 GCCCCTTTAGGAAATTGTGAAAATGA 60.520 38.462 0.00 0.00 38.24 2.57
253 254 5.643348 GCCCCTTTAGGAAATTGTGAAAATG 59.357 40.000 0.00 0.00 38.24 2.32
254 255 5.280470 GGCCCCTTTAGGAAATTGTGAAAAT 60.280 40.000 0.00 0.00 38.24 1.82
255 256 4.041075 GGCCCCTTTAGGAAATTGTGAAAA 59.959 41.667 0.00 0.00 38.24 2.29
256 257 3.580895 GGCCCCTTTAGGAAATTGTGAAA 59.419 43.478 0.00 0.00 38.24 2.69
257 258 3.169908 GGCCCCTTTAGGAAATTGTGAA 58.830 45.455 0.00 0.00 38.24 3.18
258 259 2.558800 GGGCCCCTTTAGGAAATTGTGA 60.559 50.000 12.23 0.00 38.24 3.58
259 260 1.831106 GGGCCCCTTTAGGAAATTGTG 59.169 52.381 12.23 0.00 38.24 3.33
260 261 1.618616 CGGGCCCCTTTAGGAAATTGT 60.619 52.381 18.66 0.00 38.24 2.71
261 262 1.111277 CGGGCCCCTTTAGGAAATTG 58.889 55.000 18.66 0.00 38.24 2.32
262 263 0.032515 CCGGGCCCCTTTAGGAAATT 60.033 55.000 18.66 0.00 38.24 1.82
263 264 1.618586 CCGGGCCCCTTTAGGAAAT 59.381 57.895 18.66 0.00 38.24 2.17
264 265 3.092624 CCGGGCCCCTTTAGGAAA 58.907 61.111 18.66 0.00 38.24 3.13
265 266 3.735097 GCCGGGCCCCTTTAGGAA 61.735 66.667 18.66 0.00 38.24 3.36
290 291 3.901797 AAAGCTCGTCGGGCCTTGG 62.902 63.158 14.86 0.00 0.00 3.61
291 292 0.672401 TAAAAGCTCGTCGGGCCTTG 60.672 55.000 14.86 0.00 0.00 3.61
292 293 0.672711 GTAAAAGCTCGTCGGGCCTT 60.673 55.000 14.86 10.36 0.00 4.35
293 294 1.079336 GTAAAAGCTCGTCGGGCCT 60.079 57.895 14.86 0.00 0.00 5.19
294 295 1.375013 TGTAAAAGCTCGTCGGGCC 60.375 57.895 14.86 0.00 0.00 5.80
295 296 1.785951 GTGTAAAAGCTCGTCGGGC 59.214 57.895 9.70 9.70 0.00 6.13
296 297 0.665369 ACGTGTAAAAGCTCGTCGGG 60.665 55.000 0.00 0.00 34.13 5.14
297 298 0.433492 CACGTGTAAAAGCTCGTCGG 59.567 55.000 7.58 0.00 36.62 4.79
298 299 0.179282 GCACGTGTAAAAGCTCGTCG 60.179 55.000 18.38 0.00 36.62 5.12
299 300 0.179282 CGCACGTGTAAAAGCTCGTC 60.179 55.000 18.38 0.00 36.62 4.20
300 301 1.554042 CCGCACGTGTAAAAGCTCGT 61.554 55.000 18.38 0.00 38.81 4.18
301 302 1.129809 CCGCACGTGTAAAAGCTCG 59.870 57.895 18.38 9.11 0.00 5.03
302 303 1.495951 CCCGCACGTGTAAAAGCTC 59.504 57.895 18.38 0.00 0.00 4.09
303 304 2.613506 GCCCGCACGTGTAAAAGCT 61.614 57.895 18.38 0.00 0.00 3.74
304 305 2.127003 GCCCGCACGTGTAAAAGC 60.127 61.111 18.38 9.68 0.00 3.51
305 306 1.206578 CAGCCCGCACGTGTAAAAG 59.793 57.895 18.38 3.24 0.00 2.27
306 307 2.255172 CCAGCCCGCACGTGTAAAA 61.255 57.895 18.38 0.00 0.00 1.52
307 308 2.666862 CCAGCCCGCACGTGTAAA 60.667 61.111 18.38 0.00 0.00 2.01
308 309 4.690719 CCCAGCCCGCACGTGTAA 62.691 66.667 18.38 0.00 0.00 2.41
323 324 1.130678 TGGTTTTTGGGCCCAATCCC 61.131 55.000 37.41 32.00 46.73 3.85
324 325 0.324614 CTGGTTTTTGGGCCCAATCC 59.675 55.000 37.41 33.29 35.70 3.01
325 326 0.324614 CCTGGTTTTTGGGCCCAATC 59.675 55.000 37.41 27.14 35.70 2.67
326 327 1.778017 GCCTGGTTTTTGGGCCCAAT 61.778 55.000 37.41 0.00 39.96 3.16
327 328 2.447714 GCCTGGTTTTTGGGCCCAA 61.448 57.895 34.07 34.07 39.96 4.12
328 329 2.846754 GCCTGGTTTTTGGGCCCA 60.847 61.111 24.45 24.45 39.96 5.36
332 333 1.554617 CCATTAGGCCTGGTTTTTGGG 59.445 52.381 17.99 1.45 0.00 4.12
400 401 4.077184 TACCTGGCCACGCTTCGG 62.077 66.667 0.00 2.29 0.00 4.30
401 402 2.509336 CTACCTGGCCACGCTTCG 60.509 66.667 0.00 0.00 0.00 3.79
402 403 2.820037 GCTACCTGGCCACGCTTC 60.820 66.667 0.00 0.00 0.00 3.86
403 404 4.760047 CGCTACCTGGCCACGCTT 62.760 66.667 0.00 0.00 0.00 4.68
405 406 4.137872 TACGCTACCTGGCCACGC 62.138 66.667 12.19 7.00 0.00 5.34
406 407 1.735376 ATCTACGCTACCTGGCCACG 61.735 60.000 0.00 6.17 0.00 4.94
407 408 0.032267 GATCTACGCTACCTGGCCAC 59.968 60.000 0.00 0.00 0.00 5.01
408 409 0.106167 AGATCTACGCTACCTGGCCA 60.106 55.000 4.71 4.71 0.00 5.36
409 410 0.599060 GAGATCTACGCTACCTGGCC 59.401 60.000 0.00 0.00 0.00 5.36
410 411 1.538075 GAGAGATCTACGCTACCTGGC 59.462 57.143 0.00 0.00 0.00 4.85
411 412 2.811431 CTGAGAGATCTACGCTACCTGG 59.189 54.545 0.00 0.00 0.00 4.45
412 413 2.225491 GCTGAGAGATCTACGCTACCTG 59.775 54.545 0.00 0.00 0.00 4.00
413 414 2.500229 GCTGAGAGATCTACGCTACCT 58.500 52.381 0.00 0.00 0.00 3.08
414 415 1.195900 CGCTGAGAGATCTACGCTACC 59.804 57.143 0.00 0.00 0.00 3.18
415 416 1.399215 GCGCTGAGAGATCTACGCTAC 60.399 57.143 15.20 0.00 38.79 3.58
416 417 0.869068 GCGCTGAGAGATCTACGCTA 59.131 55.000 15.20 0.00 38.79 4.26
417 418 0.817634 AGCGCTGAGAGATCTACGCT 60.818 55.000 10.39 17.88 43.58 5.07
418 419 0.660005 CAGCGCTGAGAGATCTACGC 60.660 60.000 33.66 14.86 40.73 4.42
419 420 0.660005 GCAGCGCTGAGAGATCTACG 60.660 60.000 40.21 10.24 0.00 3.51
432 433 1.970917 AACAAGCTACGATGCAGCGC 61.971 55.000 26.30 8.42 43.97 5.92
442 445 7.766219 TTATATCCTCGTTTCAACAAGCTAC 57.234 36.000 0.00 0.00 0.00 3.58
519 522 7.398047 GGGGGTTGTAGGTTATTTTAATGAGTT 59.602 37.037 0.00 0.00 0.00 3.01
668 860 1.678101 ACCTTGCAAGTGCTGTTTCTC 59.322 47.619 24.35 0.00 42.66 2.87
669 861 1.767759 ACCTTGCAAGTGCTGTTTCT 58.232 45.000 24.35 0.00 42.66 2.52
841 1048 1.779061 GCTGTTCTTGTGGGAGGGGA 61.779 60.000 0.00 0.00 0.00 4.81
850 1057 0.188342 ATGGTTGGGGCTGTTCTTGT 59.812 50.000 0.00 0.00 0.00 3.16
1346 1570 4.053295 CACCAAATCAGCCACTCAAAAAG 58.947 43.478 0.00 0.00 0.00 2.27
1350 1575 0.961019 GCACCAAATCAGCCACTCAA 59.039 50.000 0.00 0.00 0.00 3.02
1430 1657 2.813061 CAACCAGCAAACAGTTTCCAG 58.187 47.619 0.00 0.00 0.00 3.86
1461 1688 6.018669 CGAAAACTAGTCATCAGCTAAATCCC 60.019 42.308 0.00 0.00 0.00 3.85
1622 1879 8.885494 AACAATAAACTGAAGCAAAAGCAATA 57.115 26.923 0.00 0.00 0.00 1.90
1667 1924 3.202906 TGACCACCATAATTAAGCGAGC 58.797 45.455 0.00 0.00 0.00 5.03
1725 1982 5.650266 AGTACAGAGACACCAATCTACAGAG 59.350 44.000 0.00 0.00 0.00 3.35
2079 2730 6.536224 CCATATGATTTCAAAGGTTCAAAGGC 59.464 38.462 3.65 0.00 0.00 4.35
2112 2769 4.876107 AGGGTGAATAGAAACATTACTGCG 59.124 41.667 0.00 0.00 0.00 5.18
2179 4493 7.504238 TGTTTCATAATATCAACCCCATGTACC 59.496 37.037 0.00 0.00 0.00 3.34
2208 4522 6.375736 GCATATACTCTGTAGATCACCTGCTA 59.624 42.308 0.00 0.00 0.00 3.49
2213 4527 6.320164 CCCTAGCATATACTCTGTAGATCACC 59.680 46.154 0.00 0.00 0.00 4.02
2270 4669 7.549488 CCCACAGTACTTTTCTGGTTCTATTAG 59.451 40.741 0.00 0.00 37.25 1.73
2433 4890 5.652452 GGGAATATATGGGGTAACTGCATTC 59.348 44.000 0.00 0.00 0.00 2.67
2591 5048 6.328148 TGAACCAATATAATTACTCCCTCCGT 59.672 38.462 0.00 0.00 0.00 4.69
2614 5071 2.036217 CTCAAAAACCTTGCTGCCATGA 59.964 45.455 0.00 0.00 0.00 3.07
2615 5072 2.224113 ACTCAAAAACCTTGCTGCCATG 60.224 45.455 0.00 0.00 0.00 3.66
2616 5073 2.036346 GACTCAAAAACCTTGCTGCCAT 59.964 45.455 0.00 0.00 0.00 4.40
2617 5074 1.408702 GACTCAAAAACCTTGCTGCCA 59.591 47.619 0.00 0.00 0.00 4.92
2618 5075 1.600413 CGACTCAAAAACCTTGCTGCC 60.600 52.381 0.00 0.00 0.00 4.85
2619 5076 1.758783 CGACTCAAAAACCTTGCTGC 58.241 50.000 0.00 0.00 0.00 5.25
2620 5077 1.758783 GCGACTCAAAAACCTTGCTG 58.241 50.000 0.00 0.00 0.00 4.41
2621 5078 0.307760 CGCGACTCAAAAACCTTGCT 59.692 50.000 0.00 0.00 0.00 3.91
2622 5079 0.306533 TCGCGACTCAAAAACCTTGC 59.693 50.000 3.71 0.00 0.00 4.01
2623 5080 1.597663 AGTCGCGACTCAAAAACCTTG 59.402 47.619 34.98 0.00 36.92 3.61
2624 5081 1.949465 AGTCGCGACTCAAAAACCTT 58.051 45.000 34.98 10.31 36.92 3.50
2625 5082 1.597663 CAAGTCGCGACTCAAAAACCT 59.402 47.619 39.19 20.28 41.58 3.50
2626 5083 1.333791 CCAAGTCGCGACTCAAAAACC 60.334 52.381 39.19 10.95 41.58 3.27
2627 5084 1.920272 GCCAAGTCGCGACTCAAAAAC 60.920 52.381 39.19 21.97 41.58 2.43
2628 5085 0.306533 GCCAAGTCGCGACTCAAAAA 59.693 50.000 39.19 0.00 41.58 1.94
2629 5086 1.938861 GCCAAGTCGCGACTCAAAA 59.061 52.632 39.19 0.00 41.58 2.44
2630 5087 3.637714 GCCAAGTCGCGACTCAAA 58.362 55.556 39.19 0.00 41.58 2.69
2664 5121 1.359117 GACTATACGCTGAGCCGCA 59.641 57.895 0.00 0.00 0.00 5.69
2665 5122 1.726322 CGACTATACGCTGAGCCGC 60.726 63.158 0.00 0.00 0.00 6.53
2666 5123 0.384477 GTCGACTATACGCTGAGCCG 60.384 60.000 8.70 0.00 0.00 5.52
2667 5124 0.384477 CGTCGACTATACGCTGAGCC 60.384 60.000 14.70 0.00 33.04 4.70
2668 5125 0.580578 TCGTCGACTATACGCTGAGC 59.419 55.000 14.70 0.00 40.12 4.26
2669 5126 3.242349 ACTTTCGTCGACTATACGCTGAG 60.242 47.826 14.70 2.28 40.12 3.35
2670 5127 2.674852 ACTTTCGTCGACTATACGCTGA 59.325 45.455 14.70 0.00 40.12 4.26
2671 5128 3.027710 GACTTTCGTCGACTATACGCTG 58.972 50.000 14.70 0.00 40.12 5.18
2672 5129 3.316253 GACTTTCGTCGACTATACGCT 57.684 47.619 14.70 0.00 40.12 5.07
2683 5140 3.027710 CGACTATACAGCGACTTTCGTC 58.972 50.000 0.00 0.00 42.81 4.20
2684 5141 2.790468 GCGACTATACAGCGACTTTCGT 60.790 50.000 0.00 0.00 42.81 3.85
2685 5142 1.774085 GCGACTATACAGCGACTTTCG 59.226 52.381 0.00 0.00 43.89 3.46
2686 5143 2.117910 GGCGACTATACAGCGACTTTC 58.882 52.381 0.00 0.00 0.00 2.62
2687 5144 1.475280 TGGCGACTATACAGCGACTTT 59.525 47.619 0.00 0.00 32.60 2.66
2688 5145 1.100510 TGGCGACTATACAGCGACTT 58.899 50.000 0.00 0.00 32.60 3.01
2689 5146 1.319541 ATGGCGACTATACAGCGACT 58.680 50.000 0.00 0.00 32.60 4.18
2690 5147 2.983402 TATGGCGACTATACAGCGAC 57.017 50.000 0.00 0.00 32.18 5.19
2691 5148 2.882761 ACTTATGGCGACTATACAGCGA 59.117 45.455 0.00 0.00 0.00 4.93
2692 5149 3.235195 GACTTATGGCGACTATACAGCG 58.765 50.000 0.00 0.00 0.00 5.18
2693 5150 3.235195 CGACTTATGGCGACTATACAGC 58.765 50.000 0.00 0.00 0.00 4.40
2694 5151 3.058155 AGCGACTTATGGCGACTATACAG 60.058 47.826 8.25 0.00 34.15 2.74
2695 5152 2.882761 AGCGACTTATGGCGACTATACA 59.117 45.455 8.25 0.00 34.15 2.29
2696 5153 3.235195 CAGCGACTTATGGCGACTATAC 58.765 50.000 8.25 0.00 34.15 1.47
2697 5154 2.882761 ACAGCGACTTATGGCGACTATA 59.117 45.455 8.25 0.00 34.15 1.31
2698 5155 1.681793 ACAGCGACTTATGGCGACTAT 59.318 47.619 8.25 0.00 34.15 2.12
2699 5156 1.100510 ACAGCGACTTATGGCGACTA 58.899 50.000 8.25 0.00 34.15 2.59
2700 5157 1.100510 TACAGCGACTTATGGCGACT 58.899 50.000 8.25 1.64 34.15 4.18
2701 5158 2.135664 ATACAGCGACTTATGGCGAC 57.864 50.000 8.25 0.00 34.15 5.19
2702 5159 2.882761 ACTATACAGCGACTTATGGCGA 59.117 45.455 8.25 0.00 34.15 5.54
2703 5160 3.235195 GACTATACAGCGACTTATGGCG 58.765 50.000 0.00 0.00 34.15 5.69
2704 5161 3.235195 CGACTATACAGCGACTTATGGC 58.765 50.000 0.00 0.00 0.00 4.40
2705 5162 3.235195 GCGACTATACAGCGACTTATGG 58.765 50.000 0.00 0.00 0.00 2.74
2714 5171 0.992757 GCGACTCGCGACTATACAGC 60.993 60.000 3.71 0.09 44.55 4.40
2715 5172 3.059898 GCGACTCGCGACTATACAG 57.940 57.895 3.71 0.00 44.55 2.74
2726 5183 0.519175 CCAAAAATCAGCGCGACTCG 60.519 55.000 12.10 2.18 42.12 4.18
2727 5184 0.796312 TCCAAAAATCAGCGCGACTC 59.204 50.000 12.10 0.00 0.00 3.36
2728 5185 1.234821 TTCCAAAAATCAGCGCGACT 58.765 45.000 12.10 3.13 0.00 4.18
2729 5186 2.044888 TTTCCAAAAATCAGCGCGAC 57.955 45.000 12.10 0.04 0.00 5.19
2730 5187 2.389998 GTTTTCCAAAAATCAGCGCGA 58.610 42.857 12.10 2.54 0.00 5.87
2731 5188 1.122323 CGTTTTCCAAAAATCAGCGCG 59.878 47.619 0.00 0.00 0.00 6.86
2732 5189 2.153057 GTCGTTTTCCAAAAATCAGCGC 59.847 45.455 0.00 0.00 0.00 5.92
2733 5190 3.628017 AGTCGTTTTCCAAAAATCAGCG 58.372 40.909 0.00 0.00 0.00 5.18
2734 5191 4.209080 CCAAGTCGTTTTCCAAAAATCAGC 59.791 41.667 0.00 0.00 0.00 4.26
2735 5192 4.209080 GCCAAGTCGTTTTCCAAAAATCAG 59.791 41.667 0.00 0.00 0.00 2.90
2736 5193 4.116238 GCCAAGTCGTTTTCCAAAAATCA 58.884 39.130 0.00 0.00 0.00 2.57
2737 5194 3.181575 CGCCAAGTCGTTTTCCAAAAATC 59.818 43.478 0.00 0.00 0.00 2.17
2738 5195 3.120041 CGCCAAGTCGTTTTCCAAAAAT 58.880 40.909 0.00 0.00 0.00 1.82
2739 5196 2.163815 TCGCCAAGTCGTTTTCCAAAAA 59.836 40.909 0.00 0.00 0.00 1.94
2740 5197 1.743958 TCGCCAAGTCGTTTTCCAAAA 59.256 42.857 0.00 0.00 0.00 2.44
2741 5198 1.380524 TCGCCAAGTCGTTTTCCAAA 58.619 45.000 0.00 0.00 0.00 3.28
2742 5199 1.600023 ATCGCCAAGTCGTTTTCCAA 58.400 45.000 0.00 0.00 0.00 3.53
2743 5200 1.600023 AATCGCCAAGTCGTTTTCCA 58.400 45.000 0.00 0.00 0.00 3.53
2744 5201 2.740447 ACTAATCGCCAAGTCGTTTTCC 59.260 45.455 0.00 0.00 0.00 3.13
2745 5202 3.987361 GACTAATCGCCAAGTCGTTTTC 58.013 45.455 0.00 0.00 33.38 2.29
2753 5210 5.690984 ATAGTCGCCGACTAATCGCCAAG 62.691 52.174 28.54 0.00 46.28 3.61
2754 5211 3.903286 ATAGTCGCCGACTAATCGCCAA 61.903 50.000 28.54 7.79 46.28 4.52
2755 5212 2.419101 ATAGTCGCCGACTAATCGCCA 61.419 52.381 28.54 8.55 46.28 5.69
2756 5213 0.240411 ATAGTCGCCGACTAATCGCC 59.760 55.000 28.54 0.00 46.28 5.54
2757 5214 2.096069 TGTATAGTCGCCGACTAATCGC 60.096 50.000 28.54 18.43 46.28 4.58
2758 5215 3.734031 CTGTATAGTCGCCGACTAATCG 58.266 50.000 28.54 14.45 46.28 3.34
2759 5216 3.490399 GCTGTATAGTCGCCGACTAATC 58.510 50.000 28.54 22.63 46.28 1.75
2760 5217 2.095869 CGCTGTATAGTCGCCGACTAAT 60.096 50.000 28.54 18.97 46.28 1.73
2761 5218 1.262417 CGCTGTATAGTCGCCGACTAA 59.738 52.381 28.54 15.92 46.28 2.24
2763 5220 0.812811 TCGCTGTATAGTCGCCGACT 60.813 55.000 24.55 24.55 45.54 4.18
2764 5221 0.656786 GTCGCTGTATAGTCGCCGAC 60.657 60.000 9.71 9.71 0.00 4.79
2765 5222 0.812811 AGTCGCTGTATAGTCGCCGA 60.813 55.000 0.00 0.00 0.00 5.54
2766 5223 0.863799 TAGTCGCTGTATAGTCGCCG 59.136 55.000 0.00 0.00 0.00 6.46
2767 5224 3.058432 TGATTAGTCGCTGTATAGTCGCC 60.058 47.826 0.00 0.00 0.00 5.54
2768 5225 4.143194 TGATTAGTCGCTGTATAGTCGC 57.857 45.455 0.00 0.00 0.00 5.19
2769 5226 4.152526 GCTGATTAGTCGCTGTATAGTCG 58.847 47.826 0.00 0.00 0.00 4.18
2770 5227 4.083961 TCGCTGATTAGTCGCTGTATAGTC 60.084 45.833 0.00 0.00 0.00 2.59
2771 5228 3.813724 TCGCTGATTAGTCGCTGTATAGT 59.186 43.478 0.00 0.00 0.00 2.12
2772 5229 4.083749 AGTCGCTGATTAGTCGCTGTATAG 60.084 45.833 1.97 0.00 0.00 1.31
2773 5230 3.813724 AGTCGCTGATTAGTCGCTGTATA 59.186 43.478 1.97 0.00 0.00 1.47
2774 5231 2.619177 AGTCGCTGATTAGTCGCTGTAT 59.381 45.455 1.97 0.00 0.00 2.29
2775 5232 2.014857 AGTCGCTGATTAGTCGCTGTA 58.985 47.619 1.97 0.00 0.00 2.74
2776 5233 0.811915 AGTCGCTGATTAGTCGCTGT 59.188 50.000 1.97 0.00 0.00 4.40
2777 5234 1.202188 TGAGTCGCTGATTAGTCGCTG 60.202 52.381 1.97 0.00 0.00 5.18
2778 5235 1.095600 TGAGTCGCTGATTAGTCGCT 58.904 50.000 1.97 0.00 0.00 4.93
2779 5236 1.909376 TTGAGTCGCTGATTAGTCGC 58.091 50.000 0.00 0.00 0.00 5.19
2780 5237 4.434330 GGTTTTTGAGTCGCTGATTAGTCG 60.434 45.833 0.00 0.00 0.00 4.18
2781 5238 4.451096 TGGTTTTTGAGTCGCTGATTAGTC 59.549 41.667 0.00 0.00 0.00 2.59
2782 5239 4.385825 TGGTTTTTGAGTCGCTGATTAGT 58.614 39.130 0.00 0.00 0.00 2.24
2783 5240 5.327091 CATGGTTTTTGAGTCGCTGATTAG 58.673 41.667 0.00 0.00 0.00 1.73
2784 5241 4.379394 GCATGGTTTTTGAGTCGCTGATTA 60.379 41.667 0.00 0.00 0.00 1.75
2785 5242 3.612479 GCATGGTTTTTGAGTCGCTGATT 60.612 43.478 0.00 0.00 0.00 2.57
2786 5243 2.095059 GCATGGTTTTTGAGTCGCTGAT 60.095 45.455 0.00 0.00 0.00 2.90
2787 5244 1.266718 GCATGGTTTTTGAGTCGCTGA 59.733 47.619 0.00 0.00 0.00 4.26
2788 5245 1.001487 TGCATGGTTTTTGAGTCGCTG 60.001 47.619 0.00 0.00 0.00 5.18
2789 5246 1.317613 TGCATGGTTTTTGAGTCGCT 58.682 45.000 0.00 0.00 0.00 4.93
2790 5247 1.987770 CATGCATGGTTTTTGAGTCGC 59.012 47.619 19.40 0.00 0.00 5.19
2791 5248 2.598589 CCATGCATGGTTTTTGAGTCG 58.401 47.619 33.68 7.13 43.05 4.18
2803 5260 3.057386 TCACTTTGTAACTGCCATGCATG 60.057 43.478 20.19 20.19 38.13 4.06
2804 5261 3.156293 TCACTTTGTAACTGCCATGCAT 58.844 40.909 0.00 0.00 38.13 3.96
2805 5262 2.580962 TCACTTTGTAACTGCCATGCA 58.419 42.857 0.00 0.00 36.92 3.96
2806 5263 3.641437 TTCACTTTGTAACTGCCATGC 57.359 42.857 0.00 0.00 0.00 4.06
2845 5310 6.378564 CCTCAGAGGAACATACACTTTCTAGA 59.621 42.308 11.62 0.00 37.67 2.43
2850 5316 3.910627 ACCCTCAGAGGAACATACACTTT 59.089 43.478 19.21 0.00 37.67 2.66
2897 5364 5.717178 AGTAACACTCTAGATTGCCAGAAGA 59.283 40.000 9.85 0.00 0.00 2.87
2973 5601 3.931578 AGGCAGTAACTAGCAAAGTGAG 58.068 45.455 0.00 0.00 38.88 3.51
3254 5921 4.109050 GAGAAAGCAGAATAGACCACTCG 58.891 47.826 0.00 0.00 0.00 4.18
3269 5936 2.550180 GGTCAGTTTGGTCTGAGAAAGC 59.450 50.000 0.00 0.00 43.76 3.51
3438 6114 6.035843 TGAAGAAAACAATCAGTTGACTTGC 58.964 36.000 0.00 0.00 41.19 4.01
3572 6248 5.335191 GCAGACAAAAACATAGGAACCTCTG 60.335 44.000 0.00 0.47 0.00 3.35
3813 6489 4.080299 CCTAGGGCACAAGAAGGTAGATTT 60.080 45.833 0.00 0.00 0.00 2.17
3961 6884 4.190772 CTCTTTGCCCAATTTGTTTGTGT 58.809 39.130 0.00 0.00 33.15 3.72
3976 6899 1.442769 TCACAATCGCTCCTCTTTGC 58.557 50.000 0.00 0.00 0.00 3.68
3995 6918 2.679082 AGCATACCTCCATAGACGGTT 58.321 47.619 0.00 0.00 32.36 4.44
4125 7052 3.064958 ACGCAGATCTGAAAATGCTGATG 59.935 43.478 27.04 0.61 36.52 3.07
4179 7106 7.796838 TCAGAATTTATGATGTATAAGCACGC 58.203 34.615 0.00 0.00 33.03 5.34
4197 7130 9.857656 TCAGATTATTGATTTAGGCTCAGAATT 57.142 29.630 0.00 0.00 0.00 2.17
4302 7415 9.810545 ACTCAAGATTAAGCTACTTGAAGTATC 57.189 33.333 18.76 1.57 45.60 2.24
4334 7449 5.529289 ACAGACTTCCATCCCAGTATCTTA 58.471 41.667 0.00 0.00 0.00 2.10
4403 7522 6.907853 TGCTGTCTAGATGCTTATAGTCAT 57.092 37.500 17.56 0.00 0.00 3.06
4539 7668 8.016801 GCAAATAAACAAATCAAGGTCATTTGG 58.983 33.333 9.36 0.00 42.99 3.28
4689 11130 4.019174 ACATAGGGCAAAGGTTCAATGAG 58.981 43.478 0.00 0.00 0.00 2.90
4852 11308 2.995466 TCTTTGGCGCTTGATTCTTG 57.005 45.000 7.64 0.00 0.00 3.02
4937 11408 1.068748 CACTTTGGCAGCAGCTAAGTG 60.069 52.381 23.67 23.67 46.27 3.16
4938 11409 1.202806 TCACTTTGGCAGCAGCTAAGT 60.203 47.619 13.44 13.44 42.41 2.24
5218 11692 1.110442 CTTGGTGCACAAAACCTGGA 58.890 50.000 20.43 0.00 38.91 3.86
5409 12024 1.279271 GTCATGTAGAACACCAGGGCT 59.721 52.381 0.00 0.00 0.00 5.19
5504 12123 3.214697 TGCAAATACCAGAAATGCACG 57.785 42.857 0.00 0.00 41.67 5.34
5617 12250 6.685828 CAGAAAGCACATCAAATAACATCGAG 59.314 38.462 0.00 0.00 0.00 4.04
5619 12252 6.545508 TCAGAAAGCACATCAAATAACATCG 58.454 36.000 0.00 0.00 0.00 3.84
5677 12316 6.206243 CCACAAATATGGATTCTGGACAGATC 59.794 42.308 2.42 3.59 43.02 2.75
5678 12317 6.066690 CCACAAATATGGATTCTGGACAGAT 58.933 40.000 2.42 0.00 43.02 2.90
5679 12318 5.191522 TCCACAAATATGGATTCTGGACAGA 59.808 40.000 0.00 0.00 44.14 3.41
5680 12319 5.439721 TCCACAAATATGGATTCTGGACAG 58.560 41.667 0.00 0.00 44.14 3.51
5681 12320 5.449297 TCCACAAATATGGATTCTGGACA 57.551 39.130 0.00 0.00 44.14 4.02
5691 12330 4.209538 TGCCAAGAGATCCACAAATATGG 58.790 43.478 0.00 0.00 41.57 2.74
5692 12331 5.840243 TTGCCAAGAGATCCACAAATATG 57.160 39.130 0.00 0.00 0.00 1.78
5693 12332 5.716228 TGTTTGCCAAGAGATCCACAAATAT 59.284 36.000 0.00 0.00 30.59 1.28
5694 12333 5.048083 GTGTTTGCCAAGAGATCCACAAATA 60.048 40.000 0.00 0.00 30.59 1.40
5695 12334 3.896888 TGTTTGCCAAGAGATCCACAAAT 59.103 39.130 0.00 0.00 30.59 2.32
5696 12335 3.068024 GTGTTTGCCAAGAGATCCACAAA 59.932 43.478 0.00 0.00 0.00 2.83
5697 12336 2.622942 GTGTTTGCCAAGAGATCCACAA 59.377 45.455 0.00 0.00 0.00 3.33
5701 12340 4.072131 TGTTAGTGTTTGCCAAGAGATCC 58.928 43.478 0.00 0.00 0.00 3.36
5706 12345 4.460263 AGTCATGTTAGTGTTTGCCAAGA 58.540 39.130 0.00 0.00 0.00 3.02
5765 12404 8.483758 GTTCTTTAGGATTAGACCCAATCTGTA 58.516 37.037 0.00 0.00 38.49 2.74
5794 12433 4.202461 ACAGCTTCCAAAACTGGATGACTA 60.202 41.667 10.37 0.00 37.87 2.59
5831 12471 4.192317 GACGCAAATTTGGTCCTCTAGAT 58.808 43.478 19.47 0.00 0.00 1.98
5896 12542 6.753913 AAGAGGCATAGATCAGGATTTGTA 57.246 37.500 0.00 0.00 0.00 2.41
5952 12600 3.133362 ACAACGTCTGGTCTGAAGGTAAA 59.867 43.478 0.00 0.00 0.00 2.01
6028 12677 8.081633 TCTTTTGCACGTATCAAAAATGAAGAT 58.918 29.630 20.85 0.00 41.23 2.40
6031 12680 7.378461 GTCTCTTTTGCACGTATCAAAAATGAA 59.622 33.333 20.85 11.06 41.23 2.57
6033 12682 6.183359 CGTCTCTTTTGCACGTATCAAAAATG 60.183 38.462 20.85 17.13 41.23 2.32
6034 12683 5.851177 CGTCTCTTTTGCACGTATCAAAAAT 59.149 36.000 20.85 0.00 41.23 1.82
6035 12684 5.006844 TCGTCTCTTTTGCACGTATCAAAAA 59.993 36.000 20.85 14.07 41.23 1.94
6036 12685 4.508492 TCGTCTCTTTTGCACGTATCAAAA 59.492 37.500 19.91 19.91 40.03 2.44
6041 12690 3.183775 GTGTTCGTCTCTTTTGCACGTAT 59.816 43.478 0.00 0.00 35.05 3.06
6058 12707 3.042887 GCATTTGGAAACGTCTGTGTTC 58.957 45.455 0.00 0.00 0.00 3.18
6079 12728 4.051922 ACAACGCTCTTCACTTGTTCTAG 58.948 43.478 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.