Multiple sequence alignment - TraesCS6D01G267100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G267100 chr6D 100.000 6671 0 0 1 6671 377219253 377225923 0.000000e+00 12320.0
1 TraesCS6D01G267100 chr6A 92.538 2935 135 38 3690 6556 518668650 518671568 0.000000e+00 4130.0
2 TraesCS6D01G267100 chr6A 86.430 1577 93 53 705 2200 518665137 518666673 0.000000e+00 1615.0
3 TraesCS6D01G267100 chr6A 96.747 584 19 0 2950 3533 518667467 518668050 0.000000e+00 974.0
4 TraesCS6D01G267100 chr6A 89.109 303 13 9 2275 2572 518666888 518667175 6.360000e-95 359.0
5 TraesCS6D01G267100 chr6A 89.892 277 23 2 2624 2900 518667193 518667464 1.060000e-92 351.0
6 TraesCS6D01G267100 chr6A 92.537 67 1 2 3636 3698 518668061 518668127 7.120000e-15 93.5
7 TraesCS6D01G267100 chr6A 100.000 32 0 0 5800 5831 48650117 48650086 7.220000e-05 60.2
8 TraesCS6D01G267100 chr6B 93.574 1136 37 16 693 1800 563319847 563320974 0.000000e+00 1661.0
9 TraesCS6D01G267100 chr6B 92.430 1136 67 11 4142 5269 563323498 563324622 0.000000e+00 1604.0
10 TraesCS6D01G267100 chr6B 88.294 1307 94 21 5263 6524 563324778 563326070 0.000000e+00 1511.0
11 TraesCS6D01G267100 chr6B 93.668 758 35 5 2950 3695 563322201 563322957 0.000000e+00 1122.0
12 TraesCS6D01G267100 chr6B 91.654 683 37 9 2233 2900 563321521 563322198 0.000000e+00 928.0
13 TraesCS6D01G267100 chr6B 87.473 455 26 13 1810 2242 563321019 563321464 4.650000e-136 496.0
14 TraesCS6D01G267100 chr6B 89.802 353 33 3 3690 4040 563323046 563323397 3.670000e-122 449.0
15 TraesCS6D01G267100 chr6B 93.333 120 6 2 6554 6671 398401092 398400973 6.880000e-40 176.0
16 TraesCS6D01G267100 chr4D 94.127 613 32 4 1 610 374733103 374732492 0.000000e+00 929.0
17 TraesCS6D01G267100 chr4D 87.023 131 11 5 6544 6671 100753814 100753687 6.970000e-30 143.0
18 TraesCS6D01G267100 chr4D 98.039 51 1 0 2901 2951 123429790 123429740 9.210000e-14 89.8
19 TraesCS6D01G267100 chr5D 93.974 614 30 6 1 610 443181906 443181296 0.000000e+00 922.0
20 TraesCS6D01G267100 chr5D 78.774 212 41 3 5800 6010 552323154 552322946 9.020000e-29 139.0
21 TraesCS6D01G267100 chr3A 94.079 608 33 2 4 610 219155609 219155004 0.000000e+00 920.0
22 TraesCS6D01G267100 chr7D 93.115 610 38 4 1 607 24978742 24979350 0.000000e+00 891.0
23 TraesCS6D01G267100 chr5B 93.515 586 37 1 26 610 9540670 9540085 0.000000e+00 870.0
24 TraesCS6D01G267100 chr5B 79.812 213 41 2 5800 6010 703860010 703860222 3.220000e-33 154.0
25 TraesCS6D01G267100 chr5B 89.076 119 11 1 6555 6671 572817334 572817452 5.390000e-31 147.0
26 TraesCS6D01G267100 chr4A 91.598 607 46 5 4 608 13159266 13158663 0.000000e+00 833.0
27 TraesCS6D01G267100 chr4A 90.719 334 16 9 278 610 516445137 516445456 1.330000e-116 431.0
28 TraesCS6D01G267100 chr2D 85.854 615 80 7 1 610 451933292 451933904 0.000000e+00 647.0
29 TraesCS6D01G267100 chr2D 81.119 143 25 2 5798 5938 468169366 468169508 5.470000e-21 113.0
30 TraesCS6D01G267100 chr7B 85.155 613 83 5 1 610 538343886 538343279 7.350000e-174 621.0
31 TraesCS6D01G267100 chr7B 90.984 122 6 5 6553 6671 708721388 708721507 6.920000e-35 159.0
32 TraesCS6D01G267100 chr2A 95.833 120 2 3 6553 6670 657385154 657385272 2.460000e-44 191.0
33 TraesCS6D01G267100 chr2B 91.597 119 8 1 6555 6671 677403628 677403746 5.350000e-36 163.0
34 TraesCS6D01G267100 chr2B 91.597 119 8 1 6555 6671 677435182 677435300 5.350000e-36 163.0
35 TraesCS6D01G267100 chr2B 89.916 119 9 3 6555 6671 762372970 762373087 4.170000e-32 150.0
36 TraesCS6D01G267100 chr1B 90.083 121 10 1 6553 6671 457383253 457383373 8.960000e-34 156.0
37 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 86446650 86446600 9.210000e-14 89.8
38 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 260197667 260197717 9.210000e-14 89.8
39 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 362033993 362033943 9.210000e-14 89.8
40 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 393425611 393425661 9.210000e-14 89.8
41 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 437879253 437879303 9.210000e-14 89.8
42 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 446320328 446320278 9.210000e-14 89.8
43 TraesCS6D01G267100 chrUn 98.039 51 1 0 2901 2951 459453511 459453461 9.210000e-14 89.8
44 TraesCS6D01G267100 chr1A 98.039 51 1 0 2901 2951 238115018 238114968 9.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G267100 chr6D 377219253 377225923 6670 False 12320.000000 12320 100.000000 1 6671 1 chr6D.!!$F1 6670
1 TraesCS6D01G267100 chr6A 518665137 518671568 6431 False 1253.750000 4130 91.208833 705 6556 6 chr6A.!!$F1 5851
2 TraesCS6D01G267100 chr6B 563319847 563326070 6223 False 1110.142857 1661 90.985000 693 6524 7 chr6B.!!$F1 5831
3 TraesCS6D01G267100 chr4D 374732492 374733103 611 True 929.000000 929 94.127000 1 610 1 chr4D.!!$R3 609
4 TraesCS6D01G267100 chr5D 443181296 443181906 610 True 922.000000 922 93.974000 1 610 1 chr5D.!!$R1 609
5 TraesCS6D01G267100 chr3A 219155004 219155609 605 True 920.000000 920 94.079000 4 610 1 chr3A.!!$R1 606
6 TraesCS6D01G267100 chr7D 24978742 24979350 608 False 891.000000 891 93.115000 1 607 1 chr7D.!!$F1 606
7 TraesCS6D01G267100 chr5B 9540085 9540670 585 True 870.000000 870 93.515000 26 610 1 chr5B.!!$R1 584
8 TraesCS6D01G267100 chr4A 13158663 13159266 603 True 833.000000 833 91.598000 4 608 1 chr4A.!!$R1 604
9 TraesCS6D01G267100 chr2D 451933292 451933904 612 False 647.000000 647 85.854000 1 610 1 chr2D.!!$F1 609
10 TraesCS6D01G267100 chr7B 538343279 538343886 607 True 621.000000 621 85.155000 1 610 1 chr7B.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 409 1.143838 CGATCCAAGATGACGCCCA 59.856 57.895 0.00 0.00 0.00 5.36 F
1375 1423 0.321653 GGCGATTGACTGGGTGTCTT 60.322 55.000 0.00 0.00 45.54 3.01 F
1666 1726 0.393808 GAAAAGCACCCGCCCATCTA 60.394 55.000 0.00 0.00 39.83 1.98 F
1667 1727 0.679960 AAAAGCACCCGCCCATCTAC 60.680 55.000 0.00 0.00 39.83 2.59 F
2913 3280 0.032540 AAGAGCTTTGGCCTTTTGCG 59.967 50.000 3.32 0.00 42.61 4.85 F
2920 3287 0.239879 TTGGCCTTTTGCGATCGAAC 59.760 50.000 21.57 1.95 42.61 3.95 F
2921 3288 0.886938 TGGCCTTTTGCGATCGAACA 60.887 50.000 21.57 5.14 42.61 3.18 F
2922 3289 0.239879 GGCCTTTTGCGATCGAACAA 59.760 50.000 21.57 11.78 42.61 2.83 F
4860 5857 0.322648 CTCTGACATGCCACCAGTCA 59.677 55.000 0.00 0.00 39.74 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 1968 0.167470 CACAGATCGTTGCTGCCTTG 59.833 55.000 0.00 0.00 36.86 3.61 R
2859 3226 0.106967 TGCCACTGCCACTACAACAA 60.107 50.000 0.00 0.00 36.33 2.83 R
2901 3268 0.239879 GTTCGATCGCAAAAGGCCAA 59.760 50.000 11.09 0.00 40.31 4.52 R
3305 3672 0.827925 TCCTCACAGTTCGGCTCAGT 60.828 55.000 0.00 0.00 0.00 3.41 R
4522 5517 0.679505 GCTACCACCGGCAGATGATA 59.320 55.000 0.00 0.00 0.00 2.15 R
4860 5857 1.144913 TGAAGCTAAGGTGGCCAAACT 59.855 47.619 7.24 6.11 0.00 2.66 R
4956 5986 5.405797 TGATCTTCTTGTCGAATCTGTCAG 58.594 41.667 0.00 0.00 0.00 3.51 R
5151 6184 2.393768 CGACACCACATGAGCTGCC 61.394 63.158 0.00 0.00 0.00 4.85 R
6570 7828 0.036306 CAAGTAGTGGGGGCGAACTT 59.964 55.000 0.00 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
355 358 4.242262 GCAATGCGATCATCTTCGATAG 57.758 45.455 0.00 0.00 41.62 2.08
370 373 2.166829 CGATAGGATCACTCCCTCCTG 58.833 57.143 1.38 0.00 43.21 3.86
406 409 1.143838 CGATCCAAGATGACGCCCA 59.856 57.895 0.00 0.00 0.00 5.36
445 448 4.162509 AGGAGCCAAAGGATTGAGTAGTAC 59.837 45.833 0.00 0.00 38.94 2.73
662 668 7.589574 AAAAAGTTGACAAACGCACTAAAAT 57.410 28.000 0.00 0.00 41.45 1.82
663 669 8.690680 AAAAAGTTGACAAACGCACTAAAATA 57.309 26.923 0.00 0.00 41.45 1.40
664 670 8.865590 AAAAGTTGACAAACGCACTAAAATAT 57.134 26.923 0.00 0.00 41.45 1.28
665 671 7.851822 AAGTTGACAAACGCACTAAAATATG 57.148 32.000 0.00 0.00 41.45 1.78
666 672 6.966021 AGTTGACAAACGCACTAAAATATGT 58.034 32.000 0.00 0.00 41.45 2.29
667 673 7.422399 AGTTGACAAACGCACTAAAATATGTT 58.578 30.769 0.00 0.00 41.45 2.71
668 674 7.918562 AGTTGACAAACGCACTAAAATATGTTT 59.081 29.630 0.00 0.00 41.45 2.83
669 675 9.171701 GTTGACAAACGCACTAAAATATGTTTA 57.828 29.630 0.00 0.00 0.00 2.01
670 676 9.900710 TTGACAAACGCACTAAAATATGTTTAT 57.099 25.926 0.00 0.00 0.00 1.40
708 715 8.492748 TCAGAAAAAGTACGTAAAATGCTAGTG 58.507 33.333 0.00 0.00 0.00 2.74
744 757 2.438951 AAAAACCATGCTGCCAGCCG 62.439 55.000 15.29 5.17 41.51 5.52
1283 1328 0.734309 GGTTTGGTCGTTTCGTTGGT 59.266 50.000 0.00 0.00 0.00 3.67
1350 1395 4.803426 CCGTGGGTCGAGCTGCTC 62.803 72.222 19.53 19.53 42.86 4.26
1375 1423 0.321653 GGCGATTGACTGGGTGTCTT 60.322 55.000 0.00 0.00 45.54 3.01
1391 1439 1.750399 CTTGGTGGGATTGCCGGAG 60.750 63.158 5.05 0.00 33.83 4.63
1536 1592 1.342082 CGTGGAGCGTACGTTTGAGG 61.342 60.000 17.90 3.62 36.83 3.86
1566 1622 4.969816 AGATTTGGTTGCGTAAATTCTCG 58.030 39.130 0.00 0.00 0.00 4.04
1569 1625 2.070783 TGGTTGCGTAAATTCTCGTCC 58.929 47.619 0.00 5.68 0.00 4.79
1614 1674 3.243401 ACCATTTTCCACGCTTCACTTTC 60.243 43.478 0.00 0.00 0.00 2.62
1659 1719 1.873863 GTAGTGGAAAAGCACCCGC 59.126 57.895 0.00 0.00 38.99 6.13
1666 1726 0.393808 GAAAAGCACCCGCCCATCTA 60.394 55.000 0.00 0.00 39.83 1.98
1667 1727 0.679960 AAAAGCACCCGCCCATCTAC 60.680 55.000 0.00 0.00 39.83 2.59
1748 1808 0.830648 TATGGCTAGGCGCTGAAAGT 59.169 50.000 7.64 0.00 39.13 2.66
1800 1861 7.706179 GGTGTTTTCAATCAATCAGAAAGACAA 59.294 33.333 0.00 0.00 33.35 3.18
1802 1863 9.820725 TGTTTTCAATCAATCAGAAAGACAAAT 57.179 25.926 0.00 0.00 33.35 2.32
1805 1866 9.820725 TTTCAATCAATCAGAAAGACAAATGTT 57.179 25.926 0.00 0.00 0.00 2.71
1806 1867 9.820725 TTCAATCAATCAGAAAGACAAATGTTT 57.179 25.926 0.00 0.00 0.00 2.83
1831 1929 2.504367 TCTTTAGGCTCAAGTTGGCAC 58.496 47.619 15.34 7.35 0.00 5.01
1869 1967 2.427753 CCCCAGGCTCGGATTAGC 59.572 66.667 0.00 0.00 41.99 3.09
1885 1987 0.744414 TAGCCAAGGCAGCAACGATC 60.744 55.000 14.40 0.00 44.88 3.69
1938 2046 3.181497 CCGTTTCATGTGCAGAAATAGGG 60.181 47.826 12.51 7.69 37.33 3.53
2125 2242 5.497474 TGATACTTCTCTACCCTTTTTGGC 58.503 41.667 0.00 0.00 0.00 4.52
2130 2247 4.563140 TCTCTACCCTTTTTGGCGTTAT 57.437 40.909 0.00 0.00 0.00 1.89
2131 2248 4.913784 TCTCTACCCTTTTTGGCGTTATT 58.086 39.130 0.00 0.00 0.00 1.40
2134 2251 6.941436 TCTCTACCCTTTTTGGCGTTATTAAA 59.059 34.615 0.00 0.00 0.00 1.52
2136 2253 8.804912 TCTACCCTTTTTGGCGTTATTAAATA 57.195 30.769 0.00 0.00 0.00 1.40
2137 2254 8.895737 TCTACCCTTTTTGGCGTTATTAAATAG 58.104 33.333 0.00 0.00 0.00 1.73
2138 2255 7.470935 ACCCTTTTTGGCGTTATTAAATAGT 57.529 32.000 0.00 0.00 0.00 2.12
2139 2256 8.578448 ACCCTTTTTGGCGTTATTAAATAGTA 57.422 30.769 0.00 0.00 0.00 1.82
2140 2257 8.680001 ACCCTTTTTGGCGTTATTAAATAGTAG 58.320 33.333 0.00 0.00 0.00 2.57
2162 2294 3.685139 ACTTCTCTGATTTTCGGAGCA 57.315 42.857 8.23 0.00 46.80 4.26
2170 2302 5.245531 TCTGATTTTCGGAGCAAATGTAGT 58.754 37.500 0.00 0.00 0.00 2.73
2201 2335 9.575783 GTGTTGACTCCAATTTAAGTTGTTTAA 57.424 29.630 9.54 0.00 34.39 1.52
2435 2794 6.238402 GGACTCTGTCAAAACCAACTAAGTTC 60.238 42.308 0.07 0.00 33.68 3.01
2658 3025 5.237048 GCATAAAACATGCCTTCTTTTCCA 58.763 37.500 0.00 0.00 39.01 3.53
2686 3053 8.481974 AAATTGTATATGTACACGTTACTGCA 57.518 30.769 0.00 0.00 40.40 4.41
2701 3068 3.237268 ACTGCAAAGTGGGTGGATTAA 57.763 42.857 0.00 0.00 0.00 1.40
2727 3094 6.864342 TCCTAACTTGTTCCTTCTAGAATCG 58.136 40.000 5.44 0.00 0.00 3.34
2786 3153 5.617252 TCTTCCTTTGTTGATAACGACCTT 58.383 37.500 0.00 0.00 0.00 3.50
2789 3156 7.716123 TCTTCCTTTGTTGATAACGACCTTTTA 59.284 33.333 0.00 0.00 0.00 1.52
2833 3200 4.664688 AGGACCCTTCACTGAATTGAAT 57.335 40.909 0.00 0.00 34.96 2.57
2834 3201 5.003096 AGGACCCTTCACTGAATTGAATT 57.997 39.130 0.00 0.00 34.96 2.17
2835 3202 4.768968 AGGACCCTTCACTGAATTGAATTG 59.231 41.667 0.00 0.00 34.96 2.32
2836 3203 4.766891 GGACCCTTCACTGAATTGAATTGA 59.233 41.667 0.00 0.00 34.96 2.57
2849 3216 8.243961 TGAATTGAATTGACTAAGAAAACCCA 57.756 30.769 0.00 0.00 0.00 4.51
2859 3226 0.846693 AGAAAACCCAGGACAGTGCT 59.153 50.000 0.00 0.00 0.00 4.40
2901 3268 1.864669 AGCAGCTAGAGGAAGAGCTT 58.135 50.000 0.00 0.00 46.99 3.74
2902 3269 2.187100 AGCAGCTAGAGGAAGAGCTTT 58.813 47.619 0.00 0.00 46.99 3.51
2903 3270 2.093553 AGCAGCTAGAGGAAGAGCTTTG 60.094 50.000 0.00 0.00 46.99 2.77
2904 3271 2.903798 CAGCTAGAGGAAGAGCTTTGG 58.096 52.381 0.00 0.00 46.99 3.28
2905 3272 1.209261 AGCTAGAGGAAGAGCTTTGGC 59.791 52.381 0.00 0.00 46.99 4.52
2906 3273 1.745484 GCTAGAGGAAGAGCTTTGGCC 60.745 57.143 0.00 0.00 39.73 5.36
2907 3274 1.836802 CTAGAGGAAGAGCTTTGGCCT 59.163 52.381 3.32 0.00 39.73 5.19
2908 3275 1.071434 AGAGGAAGAGCTTTGGCCTT 58.929 50.000 3.32 0.00 39.73 4.35
2909 3276 1.426983 AGAGGAAGAGCTTTGGCCTTT 59.573 47.619 3.32 0.00 39.73 3.11
2910 3277 2.158400 AGAGGAAGAGCTTTGGCCTTTT 60.158 45.455 3.32 0.00 39.73 2.27
2911 3278 1.966354 AGGAAGAGCTTTGGCCTTTTG 59.034 47.619 3.32 0.00 39.73 2.44
2912 3279 1.606480 GGAAGAGCTTTGGCCTTTTGC 60.606 52.381 3.32 3.19 39.73 3.68
2913 3280 0.032540 AAGAGCTTTGGCCTTTTGCG 59.967 50.000 3.32 0.00 42.61 4.85
2914 3281 0.823356 AGAGCTTTGGCCTTTTGCGA 60.823 50.000 3.32 0.00 42.61 5.10
2915 3282 0.244721 GAGCTTTGGCCTTTTGCGAT 59.755 50.000 3.32 0.00 42.61 4.58
2916 3283 0.244721 AGCTTTGGCCTTTTGCGATC 59.755 50.000 3.32 0.00 42.61 3.69
2917 3284 1.072666 GCTTTGGCCTTTTGCGATCG 61.073 55.000 11.69 11.69 42.61 3.69
2918 3285 0.521291 CTTTGGCCTTTTGCGATCGA 59.479 50.000 21.57 0.59 42.61 3.59
2919 3286 0.955178 TTTGGCCTTTTGCGATCGAA 59.045 45.000 21.57 5.06 42.61 3.71
2920 3287 0.239879 TTGGCCTTTTGCGATCGAAC 59.760 50.000 21.57 1.95 42.61 3.95
2921 3288 0.886938 TGGCCTTTTGCGATCGAACA 60.887 50.000 21.57 5.14 42.61 3.18
2922 3289 0.239879 GGCCTTTTGCGATCGAACAA 59.760 50.000 21.57 11.78 42.61 2.83
2923 3290 1.327507 GCCTTTTGCGATCGAACAAC 58.672 50.000 21.57 0.24 0.00 3.32
2924 3291 1.963747 CCTTTTGCGATCGAACAACC 58.036 50.000 21.57 0.00 0.00 3.77
2925 3292 1.535462 CCTTTTGCGATCGAACAACCT 59.465 47.619 21.57 0.00 0.00 3.50
2926 3293 2.739913 CCTTTTGCGATCGAACAACCTA 59.260 45.455 21.57 0.00 0.00 3.08
2927 3294 3.374058 CCTTTTGCGATCGAACAACCTAT 59.626 43.478 21.57 0.00 0.00 2.57
2928 3295 4.334443 CTTTTGCGATCGAACAACCTATG 58.666 43.478 21.57 0.00 0.00 2.23
2929 3296 2.951457 TGCGATCGAACAACCTATGA 57.049 45.000 21.57 0.00 0.00 2.15
2930 3297 3.239587 TGCGATCGAACAACCTATGAA 57.760 42.857 21.57 0.00 0.00 2.57
2931 3298 2.927477 TGCGATCGAACAACCTATGAAC 59.073 45.455 21.57 0.00 0.00 3.18
2932 3299 2.927477 GCGATCGAACAACCTATGAACA 59.073 45.455 21.57 0.00 0.00 3.18
2933 3300 3.000322 GCGATCGAACAACCTATGAACAG 60.000 47.826 21.57 0.00 0.00 3.16
2934 3301 4.174009 CGATCGAACAACCTATGAACAGT 58.826 43.478 10.26 0.00 0.00 3.55
2935 3302 4.625742 CGATCGAACAACCTATGAACAGTT 59.374 41.667 10.26 0.00 0.00 3.16
2936 3303 5.444613 CGATCGAACAACCTATGAACAGTTG 60.445 44.000 10.26 0.00 45.02 3.16
2937 3304 4.951254 TCGAACAACCTATGAACAGTTGA 58.049 39.130 8.94 0.00 42.76 3.18
2938 3305 5.361427 TCGAACAACCTATGAACAGTTGAA 58.639 37.500 8.94 0.00 42.76 2.69
2939 3306 5.465390 TCGAACAACCTATGAACAGTTGAAG 59.535 40.000 8.94 0.95 42.76 3.02
2940 3307 5.438761 AACAACCTATGAACAGTTGAAGC 57.561 39.130 8.94 0.00 42.76 3.86
2941 3308 3.821033 ACAACCTATGAACAGTTGAAGCC 59.179 43.478 8.94 0.00 42.76 4.35
2942 3309 4.074970 CAACCTATGAACAGTTGAAGCCT 58.925 43.478 0.00 0.00 42.76 4.58
2943 3310 5.221843 ACAACCTATGAACAGTTGAAGCCTA 60.222 40.000 8.94 0.00 42.76 3.93
2944 3311 4.833390 ACCTATGAACAGTTGAAGCCTAC 58.167 43.478 0.00 0.00 0.00 3.18
2945 3312 4.286032 ACCTATGAACAGTTGAAGCCTACA 59.714 41.667 0.00 0.00 0.00 2.74
2946 3313 5.045578 ACCTATGAACAGTTGAAGCCTACAT 60.046 40.000 0.00 0.00 0.00 2.29
2947 3314 6.156256 ACCTATGAACAGTTGAAGCCTACATA 59.844 38.462 0.00 0.00 0.00 2.29
2948 3315 7.047891 CCTATGAACAGTTGAAGCCTACATAA 58.952 38.462 0.00 0.00 0.00 1.90
2977 3344 5.571784 TCATGGATGCTCTTTGTGATTTC 57.428 39.130 0.00 0.00 0.00 2.17
3045 3412 2.469826 CTTATGCTTATCGTGCGACCA 58.530 47.619 0.00 0.00 0.00 4.02
3305 3672 1.273986 TGATGCCCCTTCTGCAGCTA 61.274 55.000 9.47 0.00 45.00 3.32
3441 3808 1.267574 ATGAGTGATCCGCCCACTGT 61.268 55.000 7.20 0.00 44.14 3.55
3729 4649 1.698506 TCGGGGTCTTTTTGTGCATT 58.301 45.000 0.00 0.00 0.00 3.56
3735 4655 3.430098 GGGTCTTTTTGTGCATTGTCACA 60.430 43.478 9.03 9.03 44.39 3.58
3736 4656 4.370917 GGTCTTTTTGTGCATTGTCACAT 58.629 39.130 12.51 0.00 45.26 3.21
3737 4657 4.209703 GGTCTTTTTGTGCATTGTCACATG 59.790 41.667 12.51 0.00 45.26 3.21
3738 4658 5.042593 GTCTTTTTGTGCATTGTCACATGA 58.957 37.500 0.00 7.90 45.26 3.07
3741 4661 6.421501 TCTTTTTGTGCATTGTCACATGATTC 59.578 34.615 0.00 0.00 45.26 2.52
3742 4662 5.456548 TTTGTGCATTGTCACATGATTCT 57.543 34.783 0.00 0.00 45.26 2.40
3849 4771 4.753610 ACGATATGTTCAATGATGGCAGAG 59.246 41.667 0.00 0.00 0.00 3.35
3854 4776 8.783833 ATATGTTCAATGATGGCAGAGTATAC 57.216 34.615 0.00 0.00 0.00 1.47
4238 5232 9.489084 TCTTATCCATTCAAGGATTGTATTACG 57.511 33.333 0.23 0.00 46.12 3.18
4428 5423 1.338200 CCCTCTCGTTCTCTGGTTTGG 60.338 57.143 0.00 0.00 0.00 3.28
4522 5517 1.349357 GCTTCCTCCTGGTTCTGAAGT 59.651 52.381 14.07 0.00 35.88 3.01
4616 5611 1.082104 CCTCGTTGTGGCTTTTCGC 60.082 57.895 0.00 0.00 38.13 4.70
4711 5707 5.477637 TCTGCAATCATCATTTCCTGTTCAA 59.522 36.000 0.00 0.00 0.00 2.69
4860 5857 0.322648 CTCTGACATGCCACCAGTCA 59.677 55.000 0.00 0.00 39.74 3.41
4956 5986 6.366061 GCATCCTTTGGTGACATAACTTTTTC 59.634 38.462 0.00 0.00 42.32 2.29
5151 6184 6.978659 TCAGACTAGCAACAATATAACCTTCG 59.021 38.462 0.00 0.00 0.00 3.79
5195 6234 7.178712 TCGCACTAAGAAAAAGAAAGAGAAG 57.821 36.000 0.00 0.00 0.00 2.85
5304 6508 0.588252 CAAACACGCAGGAAGTCCAG 59.412 55.000 0.00 0.00 38.89 3.86
5308 6512 1.071471 ACGCAGGAAGTCCAGGTTG 59.929 57.895 0.00 0.00 38.89 3.77
5437 6641 9.130661 CATTAATCCAATACAATTACAGGGACA 57.869 33.333 0.00 0.00 0.00 4.02
5606 6824 4.502645 CAGCCTTGTTTAAAAACGAACTGG 59.497 41.667 13.14 6.49 41.74 4.00
5609 6827 3.439895 TGTTTAAAAACGAACTGGGGC 57.560 42.857 0.00 0.00 41.74 5.80
5666 6885 5.835113 TTTAAAGATGCTGGGTATGAAGC 57.165 39.130 0.00 0.00 39.96 3.86
5672 6891 0.107654 GCTGGGTATGAAGCGGAAGT 60.108 55.000 0.00 0.00 0.00 3.01
5675 6894 2.420022 CTGGGTATGAAGCGGAAGTTTG 59.580 50.000 0.00 0.00 33.53 2.93
5695 6914 1.335810 GCATGTATGTCAGCATGTGGG 59.664 52.381 16.62 0.00 43.04 4.61
5749 6968 1.366319 AGCCATTCTTCAGGTCAGGT 58.634 50.000 0.00 0.00 0.00 4.00
5768 6987 5.407387 TCAGGTAATAGTGCACGTTTTCTTC 59.593 40.000 12.01 0.00 0.00 2.87
5777 6996 3.189495 TGCACGTTTTCTTCACAGACAAA 59.811 39.130 0.00 0.00 0.00 2.83
5825 7044 6.204495 GTGAAATGCATAAAACCACCACAATT 59.796 34.615 0.00 0.00 0.00 2.32
5846 7065 4.364415 TGTGTCCTAACTTGCAAAACAC 57.636 40.909 0.00 8.84 36.84 3.32
5931 7152 5.106555 ACTGACGGAAAAATTGAGCAGTATG 60.107 40.000 0.00 0.00 33.99 2.39
5955 7176 0.318445 GTGTCTAAGCGTCCACGTGT 60.318 55.000 15.65 0.00 42.22 4.49
5972 7193 3.305516 TCGGCAGAGCTGACAGCA 61.306 61.111 28.43 3.64 45.56 4.41
5973 7194 2.814341 CGGCAGAGCTGACAGCAG 60.814 66.667 28.43 18.13 45.56 4.24
5982 7203 1.639298 GCTGACAGCAGGCCGTTAAG 61.639 60.000 22.62 0.00 41.89 1.85
5995 7216 3.078836 TTAAGGGCTCGGTCGGGG 61.079 66.667 0.00 0.00 0.00 5.73
6186 7438 1.122019 ACGACTCCCTGGCAGAGTTT 61.122 55.000 17.94 1.33 44.55 2.66
6211 7463 4.170256 CTCTCACGTAAGCTTTCTCTTCC 58.830 47.826 3.20 0.00 45.62 3.46
6240 7494 4.296621 AGGTTAGGGTTACGATTGCTTT 57.703 40.909 0.00 0.00 0.00 3.51
6343 7601 0.179097 CTAGCCGCCTCTGACCTTTC 60.179 60.000 0.00 0.00 0.00 2.62
6431 7689 1.280421 AGCTTTCTAAGGCACCCTCAG 59.720 52.381 0.00 0.00 30.89 3.35
6557 7815 8.538409 AATTGTGTCAATTGAAAAGCTAATCC 57.462 30.769 10.35 0.00 0.00 3.01
6558 7816 6.899393 TGTGTCAATTGAAAAGCTAATCCT 57.101 33.333 10.35 0.00 0.00 3.24
6559 7817 7.994425 TGTGTCAATTGAAAAGCTAATCCTA 57.006 32.000 10.35 0.00 0.00 2.94
6560 7818 8.579850 TGTGTCAATTGAAAAGCTAATCCTAT 57.420 30.769 10.35 0.00 0.00 2.57
6561 7819 9.679661 TGTGTCAATTGAAAAGCTAATCCTATA 57.320 29.630 10.35 0.00 0.00 1.31
6579 7837 7.224522 TCCTATATACTTAAGAAGTTCGCCC 57.775 40.000 10.09 0.00 42.81 6.13
6580 7838 6.210185 TCCTATATACTTAAGAAGTTCGCCCC 59.790 42.308 10.09 0.00 42.81 5.80
6581 7839 3.555527 ATACTTAAGAAGTTCGCCCCC 57.444 47.619 10.09 0.00 42.81 5.40
6582 7840 1.061546 ACTTAAGAAGTTCGCCCCCA 58.938 50.000 10.09 0.00 39.04 4.96
6583 7841 1.271217 ACTTAAGAAGTTCGCCCCCAC 60.271 52.381 10.09 0.00 39.04 4.61
6584 7842 1.003233 CTTAAGAAGTTCGCCCCCACT 59.997 52.381 0.00 0.00 0.00 4.00
6585 7843 1.941377 TAAGAAGTTCGCCCCCACTA 58.059 50.000 0.00 0.00 0.00 2.74
6586 7844 0.323957 AAGAAGTTCGCCCCCACTAC 59.676 55.000 0.00 0.00 0.00 2.73
6587 7845 0.544595 AGAAGTTCGCCCCCACTACT 60.545 55.000 0.00 0.00 0.00 2.57
6588 7846 0.323957 GAAGTTCGCCCCCACTACTT 59.676 55.000 0.00 0.00 0.00 2.24
6589 7847 0.036306 AAGTTCGCCCCCACTACTTG 59.964 55.000 0.00 0.00 0.00 3.16
6590 7848 0.834687 AGTTCGCCCCCACTACTTGA 60.835 55.000 0.00 0.00 0.00 3.02
6591 7849 0.252197 GTTCGCCCCCACTACTTGAT 59.748 55.000 0.00 0.00 0.00 2.57
6592 7850 0.988832 TTCGCCCCCACTACTTGATT 59.011 50.000 0.00 0.00 0.00 2.57
6593 7851 0.988832 TCGCCCCCACTACTTGATTT 59.011 50.000 0.00 0.00 0.00 2.17
6594 7852 2.189676 TCGCCCCCACTACTTGATTTA 58.810 47.619 0.00 0.00 0.00 1.40
6595 7853 2.775384 TCGCCCCCACTACTTGATTTAT 59.225 45.455 0.00 0.00 0.00 1.40
6596 7854 3.139077 CGCCCCCACTACTTGATTTATC 58.861 50.000 0.00 0.00 0.00 1.75
6597 7855 3.181454 CGCCCCCACTACTTGATTTATCT 60.181 47.826 0.00 0.00 0.00 1.98
6598 7856 4.390264 GCCCCCACTACTTGATTTATCTC 58.610 47.826 0.00 0.00 0.00 2.75
6599 7857 4.141482 GCCCCCACTACTTGATTTATCTCA 60.141 45.833 0.00 0.00 0.00 3.27
6600 7858 5.631481 GCCCCCACTACTTGATTTATCTCAA 60.631 44.000 0.00 0.00 34.14 3.02
6601 7859 5.823045 CCCCCACTACTTGATTTATCTCAAC 59.177 44.000 0.00 0.00 31.98 3.18
6602 7860 6.414732 CCCCACTACTTGATTTATCTCAACA 58.585 40.000 0.00 0.00 31.98 3.33
6603 7861 7.056635 CCCCACTACTTGATTTATCTCAACAT 58.943 38.462 0.00 0.00 31.98 2.71
6604 7862 7.012704 CCCCACTACTTGATTTATCTCAACATG 59.987 40.741 0.00 0.00 31.98 3.21
6605 7863 7.412853 CCACTACTTGATTTATCTCAACATGC 58.587 38.462 0.00 0.00 31.98 4.06
6606 7864 7.066163 CCACTACTTGATTTATCTCAACATGCA 59.934 37.037 0.00 0.00 31.98 3.96
6607 7865 8.453320 CACTACTTGATTTATCTCAACATGCAA 58.547 33.333 0.00 0.00 31.98 4.08
6608 7866 8.671921 ACTACTTGATTTATCTCAACATGCAAG 58.328 33.333 0.00 0.00 37.01 4.01
6609 7867 7.692460 ACTTGATTTATCTCAACATGCAAGA 57.308 32.000 0.00 0.00 35.47 3.02
6610 7868 8.289939 ACTTGATTTATCTCAACATGCAAGAT 57.710 30.769 0.00 0.00 35.47 2.40
6611 7869 9.399797 ACTTGATTTATCTCAACATGCAAGATA 57.600 29.630 0.00 0.00 35.47 1.98
6612 7870 9.880064 CTTGATTTATCTCAACATGCAAGATAG 57.120 33.333 0.00 0.00 34.44 2.08
6613 7871 9.617523 TTGATTTATCTCAACATGCAAGATAGA 57.382 29.630 0.00 0.00 34.44 1.98
6614 7872 9.049523 TGATTTATCTCAACATGCAAGATAGAC 57.950 33.333 0.00 0.00 34.44 2.59
6615 7873 8.969260 ATTTATCTCAACATGCAAGATAGACA 57.031 30.769 0.00 0.00 34.44 3.41
6616 7874 7.776933 TTATCTCAACATGCAAGATAGACAC 57.223 36.000 0.00 0.00 34.44 3.67
6617 7875 5.151297 TCTCAACATGCAAGATAGACACA 57.849 39.130 0.00 0.00 0.00 3.72
6618 7876 5.737860 TCTCAACATGCAAGATAGACACAT 58.262 37.500 0.00 0.00 0.00 3.21
6619 7877 5.814188 TCTCAACATGCAAGATAGACACATC 59.186 40.000 0.00 0.00 0.00 3.06
6620 7878 5.490159 TCAACATGCAAGATAGACACATCA 58.510 37.500 0.00 0.00 0.00 3.07
6621 7879 5.583457 TCAACATGCAAGATAGACACATCAG 59.417 40.000 0.00 0.00 0.00 2.90
6622 7880 3.875727 ACATGCAAGATAGACACATCAGC 59.124 43.478 0.00 0.00 0.00 4.26
6623 7881 3.615224 TGCAAGATAGACACATCAGCA 57.385 42.857 0.00 0.00 36.50 4.41
6624 7882 4.146745 TGCAAGATAGACACATCAGCAT 57.853 40.909 0.00 0.00 35.00 3.79
6625 7883 4.124970 TGCAAGATAGACACATCAGCATC 58.875 43.478 0.00 0.00 35.00 3.91
6626 7884 3.497640 GCAAGATAGACACATCAGCATCC 59.502 47.826 0.00 0.00 32.02 3.51
6627 7885 4.700700 CAAGATAGACACATCAGCATCCA 58.299 43.478 0.00 0.00 0.00 3.41
6628 7886 5.121105 CAAGATAGACACATCAGCATCCAA 58.879 41.667 0.00 0.00 0.00 3.53
6629 7887 5.563876 AGATAGACACATCAGCATCCAAT 57.436 39.130 0.00 0.00 0.00 3.16
6630 7888 5.549347 AGATAGACACATCAGCATCCAATC 58.451 41.667 0.00 0.00 0.00 2.67
6631 7889 3.639672 AGACACATCAGCATCCAATCA 57.360 42.857 0.00 0.00 0.00 2.57
6632 7890 3.276857 AGACACATCAGCATCCAATCAC 58.723 45.455 0.00 0.00 0.00 3.06
6633 7891 2.011947 ACACATCAGCATCCAATCACG 58.988 47.619 0.00 0.00 0.00 4.35
6634 7892 1.332686 CACATCAGCATCCAATCACGG 59.667 52.381 0.00 0.00 0.00 4.94
6635 7893 1.210234 ACATCAGCATCCAATCACGGA 59.790 47.619 0.00 0.00 40.07 4.69
6636 7894 1.871676 CATCAGCATCCAATCACGGAG 59.128 52.381 0.00 0.00 38.83 4.63
6637 7895 0.462581 TCAGCATCCAATCACGGAGC 60.463 55.000 0.00 0.00 38.83 4.70
6638 7896 1.153086 AGCATCCAATCACGGAGCC 60.153 57.895 0.00 0.00 38.83 4.70
6639 7897 1.451927 GCATCCAATCACGGAGCCA 60.452 57.895 0.00 0.00 38.83 4.75
6640 7898 1.718757 GCATCCAATCACGGAGCCAC 61.719 60.000 0.00 0.00 38.83 5.01
6641 7899 1.153369 ATCCAATCACGGAGCCACG 60.153 57.895 0.00 0.00 38.83 4.94
6643 7901 2.100631 CCAATCACGGAGCCACGTC 61.101 63.158 0.00 0.00 46.75 4.34
6644 7902 1.374125 CAATCACGGAGCCACGTCA 60.374 57.895 0.00 0.00 46.75 4.35
6645 7903 1.374252 AATCACGGAGCCACGTCAC 60.374 57.895 0.00 0.00 46.75 3.67
6646 7904 2.094757 AATCACGGAGCCACGTCACA 62.095 55.000 0.00 0.00 46.75 3.58
6647 7905 2.765250 ATCACGGAGCCACGTCACAC 62.765 60.000 0.00 0.00 46.75 3.82
6648 7906 3.224324 ACGGAGCCACGTCACACT 61.224 61.111 0.00 0.00 45.08 3.55
6649 7907 2.029073 CGGAGCCACGTCACACTT 59.971 61.111 0.00 0.00 0.00 3.16
6650 7908 2.022129 CGGAGCCACGTCACACTTC 61.022 63.158 0.00 0.00 0.00 3.01
6651 7909 1.069090 GGAGCCACGTCACACTTCA 59.931 57.895 0.00 0.00 0.00 3.02
6652 7910 0.320771 GGAGCCACGTCACACTTCAT 60.321 55.000 0.00 0.00 0.00 2.57
6653 7911 1.512926 GAGCCACGTCACACTTCATT 58.487 50.000 0.00 0.00 0.00 2.57
6654 7912 1.461127 GAGCCACGTCACACTTCATTC 59.539 52.381 0.00 0.00 0.00 2.67
6655 7913 1.202639 AGCCACGTCACACTTCATTCA 60.203 47.619 0.00 0.00 0.00 2.57
6656 7914 1.069906 GCCACGTCACACTTCATTCAC 60.070 52.381 0.00 0.00 0.00 3.18
6657 7915 1.531149 CCACGTCACACTTCATTCACC 59.469 52.381 0.00 0.00 0.00 4.02
6658 7916 1.531149 CACGTCACACTTCATTCACCC 59.469 52.381 0.00 0.00 0.00 4.61
6659 7917 1.156736 CGTCACACTTCATTCACCCC 58.843 55.000 0.00 0.00 0.00 4.95
6660 7918 1.534729 GTCACACTTCATTCACCCCC 58.465 55.000 0.00 0.00 0.00 5.40
6661 7919 1.144691 TCACACTTCATTCACCCCCA 58.855 50.000 0.00 0.00 0.00 4.96
6662 7920 1.202879 TCACACTTCATTCACCCCCAC 60.203 52.381 0.00 0.00 0.00 4.61
6663 7921 0.250727 ACACTTCATTCACCCCCACG 60.251 55.000 0.00 0.00 0.00 4.94
6664 7922 1.303317 ACTTCATTCACCCCCACGC 60.303 57.895 0.00 0.00 0.00 5.34
6665 7923 1.303236 CTTCATTCACCCCCACGCA 60.303 57.895 0.00 0.00 0.00 5.24
6666 7924 1.303236 TTCATTCACCCCCACGCAG 60.303 57.895 0.00 0.00 0.00 5.18
6667 7925 3.443045 CATTCACCCCCACGCAGC 61.443 66.667 0.00 0.00 0.00 5.25
6668 7926 4.740822 ATTCACCCCCACGCAGCC 62.741 66.667 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 1.714899 GCACACAAACAGGCTCGTGT 61.715 55.000 3.43 3.43 43.12 4.49
355 358 2.818132 CGCAGGAGGGAGTGATCC 59.182 66.667 0.00 0.00 35.71 3.36
406 409 1.004044 CTCCTGCACAGACCCAAAGAT 59.996 52.381 0.00 0.00 0.00 2.40
410 413 2.431683 GCTCCTGCACAGACCCAA 59.568 61.111 0.00 0.00 39.41 4.12
445 448 5.815233 ATCAGTCTATGTTACAGGGATGG 57.185 43.478 0.00 0.00 0.00 3.51
638 644 7.589574 ATTTTAGTGCGTTTGTCAACTTTTT 57.410 28.000 0.00 0.00 0.00 1.94
639 645 8.751335 CATATTTTAGTGCGTTTGTCAACTTTT 58.249 29.630 0.00 0.00 0.00 2.27
640 646 7.918562 ACATATTTTAGTGCGTTTGTCAACTTT 59.081 29.630 0.00 0.00 0.00 2.66
641 647 7.422399 ACATATTTTAGTGCGTTTGTCAACTT 58.578 30.769 0.00 0.00 0.00 2.66
642 648 6.966021 ACATATTTTAGTGCGTTTGTCAACT 58.034 32.000 0.00 0.00 0.00 3.16
643 649 7.617533 AACATATTTTAGTGCGTTTGTCAAC 57.382 32.000 0.00 0.00 0.00 3.18
644 650 9.900710 ATAAACATATTTTAGTGCGTTTGTCAA 57.099 25.926 0.00 0.00 0.00 3.18
681 687 9.216117 ACTAGCATTTTACGTACTTTTTCTGAT 57.784 29.630 0.00 0.00 0.00 2.90
682 688 8.492748 CACTAGCATTTTACGTACTTTTTCTGA 58.507 33.333 0.00 0.00 0.00 3.27
683 689 7.268447 GCACTAGCATTTTACGTACTTTTTCTG 59.732 37.037 0.00 0.00 41.58 3.02
684 690 7.172703 AGCACTAGCATTTTACGTACTTTTTCT 59.827 33.333 0.00 0.00 45.49 2.52
685 691 7.295930 AGCACTAGCATTTTACGTACTTTTTC 58.704 34.615 0.00 0.00 45.49 2.29
686 692 7.041644 TGAGCACTAGCATTTTACGTACTTTTT 60.042 33.333 0.00 0.00 45.49 1.94
687 693 6.425721 TGAGCACTAGCATTTTACGTACTTTT 59.574 34.615 0.00 0.00 45.49 2.27
688 694 5.929992 TGAGCACTAGCATTTTACGTACTTT 59.070 36.000 0.00 0.00 45.49 2.66
689 695 5.475719 TGAGCACTAGCATTTTACGTACTT 58.524 37.500 0.00 0.00 45.49 2.24
690 696 5.068234 TGAGCACTAGCATTTTACGTACT 57.932 39.130 0.00 0.00 45.49 2.73
691 697 5.773239 TTGAGCACTAGCATTTTACGTAC 57.227 39.130 0.00 0.00 45.49 3.67
708 715 5.984926 TGGTTTTTCTTCAACATGATTGAGC 59.015 36.000 0.00 0.00 0.00 4.26
744 757 2.960129 CCATACGCGCCGGAACTC 60.960 66.667 5.05 0.00 0.00 3.01
927 945 3.546543 CCGGGCGCTGGATAAGGA 61.547 66.667 7.64 0.00 29.82 3.36
1004 1022 3.246880 AGAAAAGGGCGACGGGGT 61.247 61.111 0.00 0.00 0.00 4.95
1350 1395 2.110967 CCAGTCAATCGCCTGCAGG 61.111 63.158 29.34 29.34 38.53 4.85
1375 1423 4.424711 GCTCCGGCAATCCCACCA 62.425 66.667 0.00 0.00 38.54 4.17
1536 1592 2.484264 ACGCAACCAAATCTAAGCAGAC 59.516 45.455 0.00 0.00 32.25 3.51
1614 1674 2.036475 CAGTAGGCACTAGGCAGTATGG 59.964 54.545 0.00 0.00 44.14 2.74
1659 1719 2.093764 GCAGCTATAGCCTGTAGATGGG 60.094 54.545 21.17 0.16 43.38 4.00
1666 1726 0.179062 GCAGTGCAGCTATAGCCTGT 60.179 55.000 21.17 0.00 43.38 4.00
1667 1727 1.220169 CGCAGTGCAGCTATAGCCTG 61.220 60.000 21.17 19.83 43.38 4.85
1800 1861 8.011844 ACTTGAGCCTAAAGAAAGAAAACATT 57.988 30.769 0.00 0.00 0.00 2.71
1802 1863 7.257722 CAACTTGAGCCTAAAGAAAGAAAACA 58.742 34.615 0.00 0.00 0.00 2.83
1805 1866 5.221244 GCCAACTTGAGCCTAAAGAAAGAAA 60.221 40.000 0.00 0.00 0.00 2.52
1806 1867 4.278419 GCCAACTTGAGCCTAAAGAAAGAA 59.722 41.667 0.00 0.00 0.00 2.52
1808 1869 3.569701 TGCCAACTTGAGCCTAAAGAAAG 59.430 43.478 0.00 0.00 0.00 2.62
1831 1929 2.671070 GCGGCACTAATCCCACTTTTTG 60.671 50.000 0.00 0.00 0.00 2.44
1869 1967 0.957395 ACAGATCGTTGCTGCCTTGG 60.957 55.000 0.00 0.00 36.86 3.61
1870 1968 0.167470 CACAGATCGTTGCTGCCTTG 59.833 55.000 0.00 0.00 36.86 3.61
2134 2251 8.749026 TCCGAAAATCAGAGAAGTACTACTAT 57.251 34.615 0.00 0.00 0.00 2.12
2136 2253 6.404954 GCTCCGAAAATCAGAGAAGTACTACT 60.405 42.308 0.00 0.00 0.00 2.57
2137 2254 5.744819 GCTCCGAAAATCAGAGAAGTACTAC 59.255 44.000 0.00 0.00 0.00 2.73
2138 2255 5.417894 TGCTCCGAAAATCAGAGAAGTACTA 59.582 40.000 0.00 0.00 0.00 1.82
2139 2256 4.220821 TGCTCCGAAAATCAGAGAAGTACT 59.779 41.667 0.00 0.00 0.00 2.73
2140 2257 4.495422 TGCTCCGAAAATCAGAGAAGTAC 58.505 43.478 0.00 0.00 0.00 2.73
2162 2294 6.119536 TGGAGTCAACACTGAAACTACATTT 58.880 36.000 0.00 0.00 31.88 2.32
2170 2302 7.639113 ACTTAAATTGGAGTCAACACTGAAA 57.361 32.000 0.00 0.00 35.48 2.69
2201 2335 8.964772 AGCATAAGAAGAGACAATAAAGCAAAT 58.035 29.630 0.00 0.00 0.00 2.32
2205 2339 9.709600 GTAAAGCATAAGAAGAGACAATAAAGC 57.290 33.333 0.00 0.00 0.00 3.51
2206 2340 9.907576 CGTAAAGCATAAGAAGAGACAATAAAG 57.092 33.333 0.00 0.00 0.00 1.85
2362 2717 4.837093 AGAATTCGAGGTTATCACCCAA 57.163 40.909 0.00 0.00 45.63 4.12
2363 2718 4.837093 AAGAATTCGAGGTTATCACCCA 57.163 40.909 0.00 0.00 45.63 4.51
2681 3048 2.969821 TAATCCACCCACTTTGCAGT 57.030 45.000 0.00 0.00 0.00 4.40
2701 3068 7.982354 CGATTCTAGAAGGAACAAGTTAGGAAT 59.018 37.037 11.53 0.00 0.00 3.01
2763 3130 5.223449 AGGTCGTTATCAACAAAGGAAGA 57.777 39.130 0.00 0.00 0.00 2.87
2771 3138 7.766738 TGCAGATATAAAAGGTCGTTATCAACA 59.233 33.333 0.00 0.00 0.00 3.33
2773 3140 8.902540 ATGCAGATATAAAAGGTCGTTATCAA 57.097 30.769 0.00 0.00 0.00 2.57
2783 3150 7.944061 TGACATTGGAATGCAGATATAAAAGG 58.056 34.615 0.00 0.00 40.04 3.11
2786 3153 8.467963 ACATGACATTGGAATGCAGATATAAA 57.532 30.769 0.00 0.00 40.04 1.40
2789 3156 6.657966 CCTACATGACATTGGAATGCAGATAT 59.342 38.462 0.00 0.00 40.04 1.63
2833 3200 4.165372 ACTGTCCTGGGTTTTCTTAGTCAA 59.835 41.667 0.00 0.00 0.00 3.18
2834 3201 3.714798 ACTGTCCTGGGTTTTCTTAGTCA 59.285 43.478 0.00 0.00 0.00 3.41
2835 3202 4.065789 CACTGTCCTGGGTTTTCTTAGTC 58.934 47.826 0.00 0.00 0.00 2.59
2836 3203 3.747708 GCACTGTCCTGGGTTTTCTTAGT 60.748 47.826 0.00 0.00 0.00 2.24
2845 3212 0.466189 CAACAAGCACTGTCCTGGGT 60.466 55.000 0.00 0.00 37.23 4.51
2849 3216 2.485479 CCACTACAACAAGCACTGTCCT 60.485 50.000 0.00 0.00 37.23 3.85
2859 3226 0.106967 TGCCACTGCCACTACAACAA 60.107 50.000 0.00 0.00 36.33 2.83
2880 3247 1.938625 GCTCTTCCTCTAGCTGCTTG 58.061 55.000 7.79 6.03 35.80 4.01
2889 3256 1.071434 AAGGCCAAAGCTCTTCCTCT 58.929 50.000 5.01 0.00 39.73 3.69
2900 3267 0.955178 TTCGATCGCAAAAGGCCAAA 59.045 45.000 11.09 0.00 40.31 3.28
2901 3268 0.239879 GTTCGATCGCAAAAGGCCAA 59.760 50.000 11.09 0.00 40.31 4.52
2902 3269 0.886938 TGTTCGATCGCAAAAGGCCA 60.887 50.000 11.09 0.00 40.31 5.36
2903 3270 0.239879 TTGTTCGATCGCAAAAGGCC 59.760 50.000 11.09 0.00 40.31 5.19
2904 3271 1.327507 GTTGTTCGATCGCAAAAGGC 58.672 50.000 11.09 0.00 39.90 4.35
2905 3272 1.535462 AGGTTGTTCGATCGCAAAAGG 59.465 47.619 11.09 0.00 0.00 3.11
2906 3273 2.969443 AGGTTGTTCGATCGCAAAAG 57.031 45.000 11.09 0.00 0.00 2.27
2907 3274 3.997681 TCATAGGTTGTTCGATCGCAAAA 59.002 39.130 11.09 0.00 0.00 2.44
2908 3275 3.591023 TCATAGGTTGTTCGATCGCAAA 58.409 40.909 11.09 0.00 0.00 3.68
2909 3276 3.239587 TCATAGGTTGTTCGATCGCAA 57.760 42.857 11.09 7.17 0.00 4.85
2910 3277 2.927477 GTTCATAGGTTGTTCGATCGCA 59.073 45.455 11.09 0.00 0.00 5.10
2911 3278 2.927477 TGTTCATAGGTTGTTCGATCGC 59.073 45.455 11.09 0.00 0.00 4.58
2912 3279 4.174009 ACTGTTCATAGGTTGTTCGATCG 58.826 43.478 9.36 9.36 0.00 3.69
2913 3280 5.637810 TCAACTGTTCATAGGTTGTTCGATC 59.362 40.000 0.00 0.00 40.52 3.69
2914 3281 5.547465 TCAACTGTTCATAGGTTGTTCGAT 58.453 37.500 0.00 0.00 40.52 3.59
2915 3282 4.951254 TCAACTGTTCATAGGTTGTTCGA 58.049 39.130 0.00 0.00 40.52 3.71
2916 3283 5.666969 TTCAACTGTTCATAGGTTGTTCG 57.333 39.130 0.00 0.00 40.52 3.95
2917 3284 5.452777 GCTTCAACTGTTCATAGGTTGTTC 58.547 41.667 0.00 0.00 40.52 3.18
2918 3285 4.278419 GGCTTCAACTGTTCATAGGTTGTT 59.722 41.667 0.00 0.00 40.52 2.83
2919 3286 3.821033 GGCTTCAACTGTTCATAGGTTGT 59.179 43.478 0.00 0.00 40.52 3.32
2920 3287 4.074970 AGGCTTCAACTGTTCATAGGTTG 58.925 43.478 0.00 0.00 40.87 3.77
2921 3288 4.373156 AGGCTTCAACTGTTCATAGGTT 57.627 40.909 0.00 0.00 0.00 3.50
2922 3289 4.286032 TGTAGGCTTCAACTGTTCATAGGT 59.714 41.667 0.00 0.00 0.00 3.08
2923 3290 4.832248 TGTAGGCTTCAACTGTTCATAGG 58.168 43.478 0.00 0.00 0.00 2.57
2924 3291 7.011482 GGTTATGTAGGCTTCAACTGTTCATAG 59.989 40.741 0.00 0.00 0.00 2.23
2925 3292 6.821665 GGTTATGTAGGCTTCAACTGTTCATA 59.178 38.462 0.00 0.00 0.00 2.15
2926 3293 5.648092 GGTTATGTAGGCTTCAACTGTTCAT 59.352 40.000 0.00 0.00 0.00 2.57
2927 3294 5.001232 GGTTATGTAGGCTTCAACTGTTCA 58.999 41.667 0.00 0.00 0.00 3.18
2928 3295 5.001232 TGGTTATGTAGGCTTCAACTGTTC 58.999 41.667 0.00 0.00 0.00 3.18
2929 3296 4.980573 TGGTTATGTAGGCTTCAACTGTT 58.019 39.130 0.00 0.00 0.00 3.16
2930 3297 4.634012 TGGTTATGTAGGCTTCAACTGT 57.366 40.909 0.00 0.00 0.00 3.55
2931 3298 5.185454 TCATGGTTATGTAGGCTTCAACTG 58.815 41.667 0.00 0.00 35.73 3.16
2932 3299 5.435686 TCATGGTTATGTAGGCTTCAACT 57.564 39.130 0.00 0.00 35.73 3.16
2933 3300 5.822519 TGATCATGGTTATGTAGGCTTCAAC 59.177 40.000 0.00 0.00 35.73 3.18
2934 3301 6.000246 TGATCATGGTTATGTAGGCTTCAA 58.000 37.500 0.00 0.00 35.73 2.69
2935 3302 5.628797 TGATCATGGTTATGTAGGCTTCA 57.371 39.130 0.00 0.00 35.73 3.02
2936 3303 6.492007 CATGATCATGGTTATGTAGGCTTC 57.508 41.667 25.37 0.00 35.73 3.86
2961 3328 2.163010 CCGCAGAAATCACAAAGAGCAT 59.837 45.455 0.00 0.00 0.00 3.79
3045 3412 3.315191 GGTGTTAGCCGAATGCACATTAT 59.685 43.478 0.00 0.00 44.83 1.28
3305 3672 0.827925 TCCTCACAGTTCGGCTCAGT 60.828 55.000 0.00 0.00 0.00 3.41
3441 3808 4.090930 CGTCTTCGGATTTAAGCTTTTCGA 59.909 41.667 3.20 0.00 0.00 3.71
3578 3946 6.917217 ATGCAGAAACTTAGCAGAATAGTC 57.083 37.500 0.00 0.00 42.14 2.59
3591 3959 4.778579 AGCTGATGACATATGCAGAAACT 58.221 39.130 11.04 2.60 0.00 2.66
3627 3995 5.352016 TGTTTGGCTACATTCGTATGGTAAC 59.648 40.000 6.98 2.77 36.01 2.50
3631 4010 5.499139 AATGTTTGGCTACATTCGTATGG 57.501 39.130 6.98 0.00 43.39 2.74
3691 4074 5.821995 CCCCGAATTCCAAAATATTGCATTT 59.178 36.000 0.00 0.00 35.10 2.32
3729 4649 5.263599 AGGCCATTTAAGAATCATGTGACA 58.736 37.500 5.01 0.00 0.00 3.58
3735 4655 4.734266 GGAGGAGGCCATTTAAGAATCAT 58.266 43.478 5.01 0.00 0.00 2.45
3736 4656 3.433598 CGGAGGAGGCCATTTAAGAATCA 60.434 47.826 5.01 0.00 0.00 2.57
3737 4657 3.142174 CGGAGGAGGCCATTTAAGAATC 58.858 50.000 5.01 0.00 0.00 2.52
3738 4658 2.509964 ACGGAGGAGGCCATTTAAGAAT 59.490 45.455 5.01 0.00 0.00 2.40
3741 4661 1.209504 TGACGGAGGAGGCCATTTAAG 59.790 52.381 5.01 0.00 0.00 1.85
3742 4662 1.065709 GTGACGGAGGAGGCCATTTAA 60.066 52.381 5.01 0.00 0.00 1.52
3849 4771 6.588756 TCATCCACACAGAAGTTTTCGTATAC 59.411 38.462 0.00 0.00 34.02 1.47
3854 4776 6.480524 TTATCATCCACACAGAAGTTTTCG 57.519 37.500 0.00 0.00 34.02 3.46
4238 5232 7.174080 GCATTCCTTCTCTTTTGATAGGATACC 59.826 40.741 0.00 0.00 38.29 2.73
4324 5319 4.733542 ATTCGGGTTGCACGGGGG 62.734 66.667 0.00 0.00 0.00 5.40
4368 5363 1.338020 CCTTGCAGGAACACAAAGACC 59.662 52.381 0.00 0.00 37.67 3.85
4428 5423 1.654954 CCAGCATTGCTCTCACCAGC 61.655 60.000 8.54 0.00 36.40 4.85
4522 5517 0.679505 GCTACCACCGGCAGATGATA 59.320 55.000 0.00 0.00 0.00 2.15
4789 5786 7.607991 AGCTATAAAGAAAAGCTTAGCTGAACA 59.392 33.333 7.77 0.00 43.97 3.18
4860 5857 1.144913 TGAAGCTAAGGTGGCCAAACT 59.855 47.619 7.24 6.11 0.00 2.66
4956 5986 5.405797 TGATCTTCTTGTCGAATCTGTCAG 58.594 41.667 0.00 0.00 0.00 3.51
5151 6184 2.393768 CGACACCACATGAGCTGCC 61.394 63.158 0.00 0.00 0.00 4.85
5308 6512 1.153958 GAAAATGGAGCAGCGGCAC 60.154 57.895 12.44 4.33 44.61 5.01
5396 6600 0.179048 TAATGCGCAGATGGTGGAGG 60.179 55.000 18.32 0.00 0.00 4.30
5437 6641 1.152030 TGGTGAGCTGGGAGGACTT 60.152 57.895 0.00 0.00 0.00 3.01
5606 6824 1.746470 ACAAGTTATAACAGGCGCCC 58.254 50.000 26.15 4.59 0.00 6.13
5609 6827 6.367969 ACAGACTTTACAAGTTATAACAGGCG 59.632 38.462 17.65 5.41 43.03 5.52
5643 6861 5.009010 CGCTTCATACCCAGCATCTTTAAAT 59.991 40.000 0.00 0.00 35.60 1.40
5666 6885 3.728864 GCTGACATACATGCAAACTTCCG 60.729 47.826 0.00 0.00 0.00 4.30
5672 6891 3.119424 CCACATGCTGACATACATGCAAA 60.119 43.478 15.13 0.00 46.08 3.68
5675 6894 1.335810 CCCACATGCTGACATACATGC 59.664 52.381 15.13 0.00 46.08 4.06
5695 6914 3.909086 AAGAACAGAGGCCCAGCGC 62.909 63.158 0.00 0.00 0.00 5.92
5749 6968 5.986741 TCTGTGAAGAAAACGTGCACTATTA 59.013 36.000 16.19 0.00 0.00 0.98
5825 7044 3.129638 GGTGTTTTGCAAGTTAGGACACA 59.870 43.478 19.76 6.64 38.05 3.72
5846 7065 2.468831 CCACGTTTTGAATTGTGGTGG 58.531 47.619 2.15 0.00 45.34 4.61
5923 7143 3.673594 GCTTAGACACGTCACATACTGCT 60.674 47.826 0.00 0.00 0.00 4.24
5955 7176 3.292500 CTGCTGTCAGCTCTGCCGA 62.293 63.158 24.76 2.56 42.97 5.54
6186 7438 3.821600 AGAGAAAGCTTACGTGAGAGTCA 59.178 43.478 12.13 0.00 0.00 3.41
6240 7494 7.590907 TCAAATCCAGTATATCCCCAAATCAA 58.409 34.615 0.00 0.00 0.00 2.57
6343 7601 2.951642 TGCCCTCAAAGTCAAAGTCTTG 59.048 45.455 0.00 0.00 0.00 3.02
6431 7689 4.022329 CACAACCATAAAACCTCCTTCCAC 60.022 45.833 0.00 0.00 0.00 4.02
6531 7789 8.992073 GGATTAGCTTTTCAATTGACACAATTT 58.008 29.630 7.89 0.00 0.00 1.82
6556 7814 6.396450 GGGGCGAACTTCTTAAGTATATAGG 58.604 44.000 1.63 0.00 41.91 2.57
6557 7815 6.014840 TGGGGGCGAACTTCTTAAGTATATAG 60.015 42.308 1.63 0.00 41.91 1.31
6558 7816 5.840149 TGGGGGCGAACTTCTTAAGTATATA 59.160 40.000 1.63 0.00 41.91 0.86
6559 7817 4.657039 TGGGGGCGAACTTCTTAAGTATAT 59.343 41.667 1.63 0.00 41.91 0.86
6560 7818 4.032310 TGGGGGCGAACTTCTTAAGTATA 58.968 43.478 1.63 0.00 41.91 1.47
6561 7819 2.841881 TGGGGGCGAACTTCTTAAGTAT 59.158 45.455 1.63 0.00 41.91 2.12
6562 7820 2.027837 GTGGGGGCGAACTTCTTAAGTA 60.028 50.000 1.63 0.00 41.91 2.24
6563 7821 1.061546 TGGGGGCGAACTTCTTAAGT 58.938 50.000 1.63 0.00 45.46 2.24
6564 7822 1.003233 AGTGGGGGCGAACTTCTTAAG 59.997 52.381 0.00 0.00 0.00 1.85
6565 7823 1.061546 AGTGGGGGCGAACTTCTTAA 58.938 50.000 0.00 0.00 0.00 1.85
6566 7824 1.551883 GTAGTGGGGGCGAACTTCTTA 59.448 52.381 0.00 0.00 0.00 2.10
6567 7825 0.323957 GTAGTGGGGGCGAACTTCTT 59.676 55.000 0.00 0.00 0.00 2.52
6568 7826 0.544595 AGTAGTGGGGGCGAACTTCT 60.545 55.000 0.00 0.00 0.00 2.85
6569 7827 0.323957 AAGTAGTGGGGGCGAACTTC 59.676 55.000 0.00 0.00 0.00 3.01
6570 7828 0.036306 CAAGTAGTGGGGGCGAACTT 59.964 55.000 0.00 0.00 0.00 2.66
6571 7829 0.834687 TCAAGTAGTGGGGGCGAACT 60.835 55.000 0.00 0.00 0.00 3.01
6572 7830 0.252197 ATCAAGTAGTGGGGGCGAAC 59.748 55.000 0.00 0.00 0.00 3.95
6573 7831 0.988832 AATCAAGTAGTGGGGGCGAA 59.011 50.000 0.00 0.00 0.00 4.70
6574 7832 0.988832 AAATCAAGTAGTGGGGGCGA 59.011 50.000 0.00 0.00 0.00 5.54
6575 7833 2.702592 TAAATCAAGTAGTGGGGGCG 57.297 50.000 0.00 0.00 0.00 6.13
6576 7834 4.141482 TGAGATAAATCAAGTAGTGGGGGC 60.141 45.833 0.00 0.00 0.00 5.80
6577 7835 5.630415 TGAGATAAATCAAGTAGTGGGGG 57.370 43.478 0.00 0.00 0.00 5.40
6578 7836 6.414732 TGTTGAGATAAATCAAGTAGTGGGG 58.585 40.000 0.00 0.00 39.78 4.96
6579 7837 7.467811 GCATGTTGAGATAAATCAAGTAGTGGG 60.468 40.741 0.00 0.00 39.78 4.61
6580 7838 7.066163 TGCATGTTGAGATAAATCAAGTAGTGG 59.934 37.037 0.00 0.00 39.78 4.00
6581 7839 7.977904 TGCATGTTGAGATAAATCAAGTAGTG 58.022 34.615 0.00 0.00 39.78 2.74
6582 7840 8.565896 TTGCATGTTGAGATAAATCAAGTAGT 57.434 30.769 0.00 0.00 39.78 2.73
6583 7841 8.886719 TCTTGCATGTTGAGATAAATCAAGTAG 58.113 33.333 0.00 0.00 39.78 2.57
6584 7842 8.791327 TCTTGCATGTTGAGATAAATCAAGTA 57.209 30.769 0.00 0.00 39.78 2.24
6585 7843 7.692460 TCTTGCATGTTGAGATAAATCAAGT 57.308 32.000 0.00 0.00 39.78 3.16
6586 7844 9.880064 CTATCTTGCATGTTGAGATAAATCAAG 57.120 33.333 6.53 5.92 39.78 3.02
6587 7845 9.617523 TCTATCTTGCATGTTGAGATAAATCAA 57.382 29.630 6.53 0.00 36.85 2.57
6588 7846 9.049523 GTCTATCTTGCATGTTGAGATAAATCA 57.950 33.333 6.53 0.00 33.38 2.57
6589 7847 9.049523 TGTCTATCTTGCATGTTGAGATAAATC 57.950 33.333 6.53 2.31 33.38 2.17
6590 7848 8.834465 GTGTCTATCTTGCATGTTGAGATAAAT 58.166 33.333 6.53 0.00 33.38 1.40
6591 7849 7.823799 TGTGTCTATCTTGCATGTTGAGATAAA 59.176 33.333 6.53 0.00 33.38 1.40
6592 7850 7.330262 TGTGTCTATCTTGCATGTTGAGATAA 58.670 34.615 6.53 0.00 33.38 1.75
6593 7851 6.877236 TGTGTCTATCTTGCATGTTGAGATA 58.123 36.000 5.23 5.23 32.68 1.98
6594 7852 5.737860 TGTGTCTATCTTGCATGTTGAGAT 58.262 37.500 3.47 3.47 34.67 2.75
6595 7853 5.151297 TGTGTCTATCTTGCATGTTGAGA 57.849 39.130 0.00 0.00 0.00 3.27
6596 7854 5.583457 TGATGTGTCTATCTTGCATGTTGAG 59.417 40.000 0.00 0.00 0.00 3.02
6597 7855 5.490159 TGATGTGTCTATCTTGCATGTTGA 58.510 37.500 0.00 0.00 0.00 3.18
6598 7856 5.729732 GCTGATGTGTCTATCTTGCATGTTG 60.730 44.000 0.00 0.00 32.09 3.33
6599 7857 4.334759 GCTGATGTGTCTATCTTGCATGTT 59.665 41.667 0.00 0.00 32.09 2.71
6600 7858 3.875727 GCTGATGTGTCTATCTTGCATGT 59.124 43.478 0.00 0.00 32.09 3.21
6601 7859 3.875134 TGCTGATGTGTCTATCTTGCATG 59.125 43.478 0.00 0.00 34.75 4.06
6602 7860 4.146745 TGCTGATGTGTCTATCTTGCAT 57.853 40.909 0.00 0.00 34.75 3.96
6603 7861 3.615224 TGCTGATGTGTCTATCTTGCA 57.385 42.857 0.00 0.00 36.08 4.08
6604 7862 3.497640 GGATGCTGATGTGTCTATCTTGC 59.502 47.826 0.00 0.00 0.00 4.01
6605 7863 4.700700 TGGATGCTGATGTGTCTATCTTG 58.299 43.478 0.00 0.00 0.00 3.02
6606 7864 5.363562 TTGGATGCTGATGTGTCTATCTT 57.636 39.130 0.00 0.00 0.00 2.40
6607 7865 5.071384 TGATTGGATGCTGATGTGTCTATCT 59.929 40.000 0.00 0.00 0.00 1.98
6608 7866 5.178996 GTGATTGGATGCTGATGTGTCTATC 59.821 44.000 0.00 0.00 0.00 2.08
6609 7867 5.061853 GTGATTGGATGCTGATGTGTCTAT 58.938 41.667 0.00 0.00 0.00 1.98
6610 7868 4.445453 GTGATTGGATGCTGATGTGTCTA 58.555 43.478 0.00 0.00 0.00 2.59
6611 7869 3.276857 GTGATTGGATGCTGATGTGTCT 58.723 45.455 0.00 0.00 0.00 3.41
6612 7870 2.031314 CGTGATTGGATGCTGATGTGTC 59.969 50.000 0.00 0.00 0.00 3.67
6613 7871 2.011947 CGTGATTGGATGCTGATGTGT 58.988 47.619 0.00 0.00 0.00 3.72
6614 7872 1.332686 CCGTGATTGGATGCTGATGTG 59.667 52.381 0.00 0.00 0.00 3.21
6615 7873 1.210234 TCCGTGATTGGATGCTGATGT 59.790 47.619 0.00 0.00 31.53 3.06
6616 7874 1.871676 CTCCGTGATTGGATGCTGATG 59.128 52.381 0.00 0.00 37.41 3.07
6617 7875 1.813092 GCTCCGTGATTGGATGCTGAT 60.813 52.381 0.00 0.00 37.41 2.90
6618 7876 0.462581 GCTCCGTGATTGGATGCTGA 60.463 55.000 0.00 0.00 37.41 4.26
6619 7877 1.442526 GGCTCCGTGATTGGATGCTG 61.443 60.000 0.00 0.00 37.41 4.41
6620 7878 1.153086 GGCTCCGTGATTGGATGCT 60.153 57.895 0.00 0.00 37.41 3.79
6621 7879 1.451927 TGGCTCCGTGATTGGATGC 60.452 57.895 0.00 0.00 37.41 3.91
6622 7880 1.431488 CGTGGCTCCGTGATTGGATG 61.431 60.000 0.00 0.00 37.41 3.51
6623 7881 1.153369 CGTGGCTCCGTGATTGGAT 60.153 57.895 0.00 0.00 37.41 3.41
6624 7882 2.264480 CGTGGCTCCGTGATTGGA 59.736 61.111 0.00 0.00 36.37 3.53
6625 7883 2.047274 ACGTGGCTCCGTGATTGG 60.047 61.111 2.11 0.00 40.08 3.16
6626 7884 1.374125 TGACGTGGCTCCGTGATTG 60.374 57.895 7.48 0.00 41.98 2.67
6627 7885 1.374252 GTGACGTGGCTCCGTGATT 60.374 57.895 7.48 0.00 41.98 2.57
6628 7886 2.261671 GTGACGTGGCTCCGTGAT 59.738 61.111 7.48 0.00 41.98 3.06
6629 7887 3.220658 TGTGACGTGGCTCCGTGA 61.221 61.111 7.48 0.00 41.98 4.35
6630 7888 2.971428 AAGTGTGACGTGGCTCCGTG 62.971 60.000 7.48 0.00 41.98 4.94
6631 7889 2.694829 GAAGTGTGACGTGGCTCCGT 62.695 60.000 0.00 2.54 45.18 4.69
6632 7890 2.022129 GAAGTGTGACGTGGCTCCG 61.022 63.158 0.00 0.00 0.00 4.63
6633 7891 0.320771 ATGAAGTGTGACGTGGCTCC 60.321 55.000 0.00 0.00 0.00 4.70
6634 7892 1.461127 GAATGAAGTGTGACGTGGCTC 59.539 52.381 0.00 0.00 0.00 4.70
6635 7893 1.202639 TGAATGAAGTGTGACGTGGCT 60.203 47.619 0.00 0.00 0.00 4.75
6636 7894 1.069906 GTGAATGAAGTGTGACGTGGC 60.070 52.381 0.00 0.00 0.00 5.01
6637 7895 1.531149 GGTGAATGAAGTGTGACGTGG 59.469 52.381 0.00 0.00 0.00 4.94
6638 7896 1.531149 GGGTGAATGAAGTGTGACGTG 59.469 52.381 0.00 0.00 0.00 4.49
6639 7897 1.542547 GGGGTGAATGAAGTGTGACGT 60.543 52.381 0.00 0.00 0.00 4.34
6640 7898 1.156736 GGGGTGAATGAAGTGTGACG 58.843 55.000 0.00 0.00 0.00 4.35
6641 7899 1.202879 TGGGGGTGAATGAAGTGTGAC 60.203 52.381 0.00 0.00 0.00 3.67
6642 7900 1.144691 TGGGGGTGAATGAAGTGTGA 58.855 50.000 0.00 0.00 0.00 3.58
6643 7901 1.247567 GTGGGGGTGAATGAAGTGTG 58.752 55.000 0.00 0.00 0.00 3.82
6644 7902 0.250727 CGTGGGGGTGAATGAAGTGT 60.251 55.000 0.00 0.00 0.00 3.55
6645 7903 1.586154 GCGTGGGGGTGAATGAAGTG 61.586 60.000 0.00 0.00 0.00 3.16
6646 7904 1.303317 GCGTGGGGGTGAATGAAGT 60.303 57.895 0.00 0.00 0.00 3.01
6647 7905 1.303236 TGCGTGGGGGTGAATGAAG 60.303 57.895 0.00 0.00 0.00 3.02
6648 7906 1.303236 CTGCGTGGGGGTGAATGAA 60.303 57.895 0.00 0.00 0.00 2.57
6649 7907 2.350895 CTGCGTGGGGGTGAATGA 59.649 61.111 0.00 0.00 0.00 2.57
6650 7908 3.443045 GCTGCGTGGGGGTGAATG 61.443 66.667 0.00 0.00 0.00 2.67
6651 7909 4.740822 GGCTGCGTGGGGGTGAAT 62.741 66.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.