AutoCloner

Multiple sequence alignment - TraesCS6D01G266900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G266900	chr6D	100.000	5253	0	0	1	5253	376977516	376972264	0.000000e+00	9701.0
1	TraesCS6D01G266900	chr6D	97.109	5188	61	23	103	5253	376948497	376943362	0.000000e+00	8667.0
2	TraesCS6D01G266900	chr6D	90.964	2634	131	35	2134	4723	29114109	29116679	0.000000e+00	3446.0
3	TraesCS6D01G266900	chr6D	90.701	742	56	7	1291	2029	29113386	29114117	0.000000e+00	976.0
4	TraesCS6D01G266900	chr6D	88.372	731	71	4	1299	2029	13947767	13947051	0.000000e+00	867.0
5	TraesCS6D01G266900	chr6D	87.278	731	79	4	1299	2029	13959050	13958334	0.000000e+00	822.0
6	TraesCS6D01G266900	chr6D	91.461	445	26	3	57	491	29112189	29112631	7.530000e-168	601.0
7	TraesCS6D01G266900	chr6D	93.498	323	15	3	489	810	29112738	29113055	4.760000e-130	475.0
8	TraesCS6D01G266900	chr6D	90.145	345	29	3	857	1201	29113030	29113369	1.340000e-120	444.0
9	TraesCS6D01G266900	chr6D	83.784	185	22	5	4730	4908	29116730	29116912	9.050000e-38	169.0
10	TraesCS6D01G266900	chr6D	98.333	60	1	0	1	60	376977411	376977352	7.190000e-19	106.0
11	TraesCS6D01G266900	chr6B	95.592	5195	139	28	103	5253	563136703	563131555	0.000000e+00	8242.0
12	TraesCS6D01G266900	chr6B	95.742	2771	81	21	2512	5253	563146205	563143443	0.000000e+00	4429.0
13	TraesCS6D01G266900	chr6B	92.740	1281	46	12	1183	2450	563147449	563146203	0.000000e+00	1807.0
14	TraesCS6D01G266900	chr6B	91.113	1294	49	18	2134	3403	60605325	60604074	0.000000e+00	1692.0
15	TraesCS6D01G266900	chr6B	92.445	1178	39	6	47	1201	563148539	563147389	0.000000e+00	1637.0
16	TraesCS6D01G266900	chr6B	88.829	1298	84	29	3451	4730	60604074	60602820	0.000000e+00	1537.0
17	TraesCS6D01G266900	chr6B	87.969	906	78	19	2141	3034	25401445	25400559	0.000000e+00	1040.0
18	TraesCS6D01G266900	chr6B	88.079	906	64	23	2141	3033	25454414	25453540	0.000000e+00	1035.0
19	TraesCS6D01G266900	chr6B	87.982	907	65	23	2141	3034	25429122	25428247	0.000000e+00	1031.0
20	TraesCS6D01G266900	chr6B	89.054	740	60	8	1291	2029	60606036	60605317	0.000000e+00	898.0
21	TraesCS6D01G266900	chr6B	91.314	449	21	2	53	491	60607234	60606794	9.740000e-167	597.0
22	TraesCS6D01G266900	chr6B	88.454	485	30	11	2141	2617	25392168	25391702	3.550000e-156	562.0
23	TraesCS6D01G266900	chr6B	94.688	320	14	2	492	810	60606684	60606367	1.310000e-135	494.0
24	TraesCS6D01G266900	chr6B	89.275	345	32	3	857	1201	60606392	60606053	1.350000e-115	427.0
25	TraesCS6D01G266900	chr6B	87.164	335	19	7	2141	2467	25398055	25397737	5.000000e-95	359.0
26	TraesCS6D01G266900	chr6B	82.507	383	47	3	1304	1686	25451634	25451272	8.490000e-83	318.0
27	TraesCS6D01G266900	chr6B	82.245	383	48	3	1304	1686	25426342	25425980	3.950000e-81	313.0
28	TraesCS6D01G266900	chr6B	83.333	186	21	6	4730	4906	60602781	60602597	4.210000e-36	163.0
29	TraesCS6D01G266900	chr6B	97.959	49	1	0	1198	1246	563135664	563135616	9.370000e-13	86.1
30	TraesCS6D01G266900	chr6A	94.371	5241	169	45	53	5253	518600901	518595747	0.000000e+00	7928.0
31	TraesCS6D01G266900	chr6A	94.931	4478	127	36	838	5253	518552073	518547634	0.000000e+00	6920.0
32	TraesCS6D01G266900	chr6A	90.296	2638	127	40	2134	4730	33294314	33291765	0.000000e+00	3334.0
33	TraesCS6D01G266900	chr6A	96.538	780	27	0	53	832	518552810	518552031	0.000000e+00	1291.0
34	TraesCS6D01G266900	chr6A	90.000	740	53	8	1291	2029	33295025	33294306	0.000000e+00	937.0
35	TraesCS6D01G266900	chr6A	86.475	732	68	10	1299	2029	14553979	14553278	0.000000e+00	774.0
36	TraesCS6D01G266900	chr6A	83.643	807	88	16	2756	3550	14522588	14521814	0.000000e+00	719.0
37	TraesCS6D01G266900	chr6A	91.593	452	24	6	53	491	33296240	33295790	3.480000e-171	612.0
38	TraesCS6D01G266900	chr6A	93.458	321	19	2	492	810	33295680	33295360	4.760000e-130	475.0
39	TraesCS6D01G266900	chr6A	87.679	349	34	5	857	1201	33295385	33295042	1.060000e-106	398.0
40	TraesCS6D01G266900	chr6A	89.362	141	12	3	1183	1323	518551770	518551633	1.940000e-39	174.0
41	TraesCS6D01G266900	chrUn	89.049	831	61	19	2218	3034	355299260	355298446	0.000000e+00	1003.0
42	TraesCS6D01G266900	chrUn	87.443	653	68	4	1377	2029	469507805	469507167	0.000000e+00	739.0
43	TraesCS6D01G266900	chr3D	84.080	201	29	3	53	251	196949534	196949733	1.930000e-44	191.0
44	TraesCS6D01G266900	chr3A	83.582	201	30	3	53	251	251339733	251339932	8.980000e-43	185.0
45	TraesCS6D01G266900	chr5A	88.387	155	14	4	646	799	214918580	214918731	3.230000e-42	183.0
46	TraesCS6D01G266900	chr4D	92.683	41	3	0	4952	4992	455480742	455480782	5.680000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G266900	chr6D	376972264	376977516	5252	True	4903.500000	9701	99.166500	1	5253	2	chr6D.!!$R4	5252
1	TraesCS6D01G266900	chr6D	376943362	376948497	5135	True	8667.000000	8667	97.109000	103	5253	1	chr6D.!!$R3	5150
2	TraesCS6D01G266900	chr6D	29112189	29116912	4723	False	1018.500000	3446	90.092167	57	4908	6	chr6D.!!$F1	4851
3	TraesCS6D01G266900	chr6D	13947051	13947767	716	True	867.000000	867	88.372000	1299	2029	1	chr6D.!!$R1	730
4	TraesCS6D01G266900	chr6D	13958334	13959050	716	True	822.000000	822	87.278000	1299	2029	1	chr6D.!!$R2	730
5	TraesCS6D01G266900	chr6B	563131555	563136703	5148	True	4164.050000	8242	96.775500	103	5253	2	chr6B.!!$R6	5150
6	TraesCS6D01G266900	chr6B	563143443	563148539	5096	True	2624.333333	4429	93.642333	47	5253	3	chr6B.!!$R7	5206
7	TraesCS6D01G266900	chr6B	60602597	60607234	4637	True	829.714286	1692	89.658000	53	4906	7	chr6B.!!$R5	4853
8	TraesCS6D01G266900	chr6B	25397737	25401445	3708	True	699.500000	1040	87.566500	2141	3034	2	chr6B.!!$R2	893
9	TraesCS6D01G266900	chr6B	25451272	25454414	3142	True	676.500000	1035	85.293000	1304	3033	2	chr6B.!!$R4	1729
10	TraesCS6D01G266900	chr6B	25425980	25429122	3142	True	672.000000	1031	85.113500	1304	3034	2	chr6B.!!$R3	1730
11	TraesCS6D01G266900	chr6A	518595747	518600901	5154	True	7928.000000	7928	94.371000	53	5253	1	chr6A.!!$R3	5200
12	TraesCS6D01G266900	chr6A	518547634	518552810	5176	True	2795.000000	6920	93.610333	53	5253	3	chr6A.!!$R5	5200
13	TraesCS6D01G266900	chr6A	33291765	33296240	4475	True	1151.200000	3334	90.605200	53	4730	5	chr6A.!!$R4	4677
14	TraesCS6D01G266900	chr6A	14553278	14553979	701	True	774.000000	774	86.475000	1299	2029	1	chr6A.!!$R2	730
15	TraesCS6D01G266900	chr6A	14521814	14522588	774	True	719.000000	719	83.643000	2756	3550	1	chr6A.!!$R1	794
16	TraesCS6D01G266900	chrUn	355298446	355299260	814	True	1003.000000	1003	89.049000	2218	3034	1	chrUn.!!$R1	816
17	TraesCS6D01G266900	chrUn	469507167	469507805	638	True	739.000000	739	87.443000	1377	2029	1	chrUn.!!$R2	652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
834	1030	0.037419	GTGAAATTGCGGGGCACAAT	60.037	50.0	0.0	0.0	38.71	2.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
4984	7070	6.749923	AGAACAGAATAGGTTGCTTTGATC	57.25	37.5	0.0	0.0	0.0	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	6.736807	CACTTTTTGTGTGTATGACATGTG	57.263	37.500	1.15	0.00	41.53	3.21
25	26	5.686841	CACTTTTTGTGTGTATGACATGTGG	59.313	40.000	1.15	0.00	41.53	4.17
26	27	5.592282	ACTTTTTGTGTGTATGACATGTGGA	59.408	36.000	1.15	0.00	36.78	4.02
27	28	6.096141	ACTTTTTGTGTGTATGACATGTGGAA	59.904	34.615	1.15	0.00	36.78	3.53
28	29	6.456795	TTTTGTGTGTATGACATGTGGAAA	57.543	33.333	1.15	0.00	36.78	3.13
29	30	5.687770	TTGTGTGTATGACATGTGGAAAG	57.312	39.130	1.15	0.00	36.78	2.62
30	31	4.967036	TGTGTGTATGACATGTGGAAAGA	58.033	39.130	1.15	0.00	36.78	2.52
31	32	5.559770	TGTGTGTATGACATGTGGAAAGAT	58.440	37.500	1.15	0.00	36.78	2.40
32	33	6.003326	TGTGTGTATGACATGTGGAAAGATT	58.997	36.000	1.15	0.00	36.78	2.40
33	34	6.489700	TGTGTGTATGACATGTGGAAAGATTT	59.510	34.615	1.15	0.00	36.78	2.17
34	35	7.014134	TGTGTGTATGACATGTGGAAAGATTTT	59.986	33.333	1.15	0.00	36.78	1.82
35	36	7.326789	GTGTGTATGACATGTGGAAAGATTTTG	59.673	37.037	1.15	0.00	36.78	2.44
36	37	7.230309	TGTGTATGACATGTGGAAAGATTTTGA	59.770	33.333	1.15	0.00	0.00	2.69
37	38	8.081633	GTGTATGACATGTGGAAAGATTTTGAA	58.918	33.333	1.15	0.00	0.00	2.69
38	39	8.805175	TGTATGACATGTGGAAAGATTTTGAAT	58.195	29.630	1.15	0.00	0.00	2.57
72	73	5.321102	TGCCTTAGGTGCTCAAATTCTTAA	58.679	37.500	0.00	0.00	0.00	1.85
133	134	3.760580	TGTGTGTATGACATGTGGACA	57.239	42.857	1.15	1.04	36.78	4.02
134	135	3.663025	TGTGTGTATGACATGTGGACAG	58.337	45.455	1.15	0.00	36.78	3.51
812	1008	1.077915	GAAATTGCGGGGCACAATTG	58.922	50.000	3.24	3.24	44.76	2.32
813	1009	0.683973	AAATTGCGGGGCACAATTGA	59.316	45.000	13.59	0.00	44.76	2.57
814	1010	0.683973	AATTGCGGGGCACAATTGAA	59.316	45.000	13.59	0.00	44.05	2.69
815	1011	0.247185	ATTGCGGGGCACAATTGAAG	59.753	50.000	13.59	5.37	38.71	3.02
816	1012	1.112315	TTGCGGGGCACAATTGAAGT	61.112	50.000	13.59	0.00	38.71	3.01
817	1013	1.080569	GCGGGGCACAATTGAAGTG	60.081	57.895	13.59	0.86	39.92	3.16
818	1014	1.523154	GCGGGGCACAATTGAAGTGA	61.523	55.000	13.59	0.00	39.30	3.41
819	1015	0.958091	CGGGGCACAATTGAAGTGAA	59.042	50.000	13.59	0.00	39.30	3.18
820	1016	1.339610	CGGGGCACAATTGAAGTGAAA	59.660	47.619	13.59	0.00	39.30	2.69
821	1017	2.029110	CGGGGCACAATTGAAGTGAAAT	60.029	45.455	13.59	0.00	39.30	2.17
822	1018	3.554752	CGGGGCACAATTGAAGTGAAATT	60.555	43.478	13.59	0.00	39.30	1.82
823	1019	3.747529	GGGGCACAATTGAAGTGAAATTG	59.252	43.478	13.59	7.21	46.06	2.32
824	1020	3.187022	GGGCACAATTGAAGTGAAATTGC	59.813	43.478	13.59	7.86	45.02	3.56
825	1021	3.120923	GGCACAATTGAAGTGAAATTGCG	60.121	43.478	13.59	1.66	45.02	4.85
826	1022	3.120923	GCACAATTGAAGTGAAATTGCGG	60.121	43.478	13.59	3.71	45.02	5.69
827	1023	3.429543	CACAATTGAAGTGAAATTGCGGG	59.570	43.478	13.59	0.00	45.02	6.13
828	1024	2.995258	CAATTGAAGTGAAATTGCGGGG	59.005	45.455	0.00	0.00	37.97	5.73
829	1025	0.316841	TTGAAGTGAAATTGCGGGGC	59.683	50.000	0.00	0.00	0.00	5.80
830	1026	0.825425	TGAAGTGAAATTGCGGGGCA	60.825	50.000	0.00	0.00	36.47	5.36
831	1027	0.388520	GAAGTGAAATTGCGGGGCAC	60.389	55.000	0.00	0.00	38.71	5.01
832	1028	1.112315	AAGTGAAATTGCGGGGCACA	61.112	50.000	0.00	0.00	38.71	4.57
833	1029	1.112315	AGTGAAATTGCGGGGCACAA	61.112	50.000	0.00	0.00	38.71	3.33
834	1030	0.037419	GTGAAATTGCGGGGCACAAT	60.037	50.000	0.00	0.00	38.71	2.71
835	1031	0.683973	TGAAATTGCGGGGCACAATT	59.316	45.000	6.56	6.56	46.85	2.32
836	1032	1.077915	GAAATTGCGGGGCACAATTG	58.922	50.000	3.24	3.24	44.76	2.32
919	1115	6.341316	ACCAGCGCCTATATATTGAGTTATG	58.659	40.000	2.29	0.00	0.00	1.90
1171	1413	0.978146	CCACCCCTCGGTCATCTCTT	60.978	60.000	0.00	0.00	42.04	2.85
1274	1516	1.006766	TTCATCCCCCTATGCCCCA	59.993	57.895	0.00	0.00	0.00	4.96
1295	1564	1.225704	CAGCCATCTCCTTCCCCAC	59.774	63.158	0.00	0.00	0.00	4.61
4817	6859	9.391006	AGAACGATTAGCAATCCTACATAAAAA	57.609	29.630	0.00	0.00	34.35	1.94
4984	7070	8.970859	ATTCCTGTGTTTTGAGAATCCTATAG	57.029	34.615	0.00	0.00	0.00	1.31
5001	7097	9.732130	AATCCTATAGATCAAAGCAACCTATTC	57.268	33.333	0.00	0.00	32.47	1.75
5137	7583	3.820467	TGGTAGGTGATCAAAGTTTGCTG	59.180	43.478	10.90	0.00	0.00	4.41
5198	7645	4.398319	TCCTTTGAAGACATCCCTGTTTC	58.602	43.478	0.00	0.00	35.14	2.78
5219	7672	2.420687	CCCTAGTTCTGCATTGAGTCCC	60.421	54.545	0.00	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	6.070897	TCCACATGTCATACACACAAAAAG	57.929	37.500	0.00	0.00	38.04	2.27
4	5	6.456795	TTCCACATGTCATACACACAAAAA	57.543	33.333	0.00	0.00	38.04	1.94
5	6	6.319911	TCTTTCCACATGTCATACACACAAAA	59.680	34.615	0.00	0.00	38.04	2.44
6	7	5.825151	TCTTTCCACATGTCATACACACAAA	59.175	36.000	0.00	0.00	38.04	2.83
7	8	5.372373	TCTTTCCACATGTCATACACACAA	58.628	37.500	0.00	0.00	38.04	3.33
8	9	4.967036	TCTTTCCACATGTCATACACACA	58.033	39.130	0.00	0.00	38.04	3.72
9	10	6.500684	AATCTTTCCACATGTCATACACAC	57.499	37.500	0.00	0.00	38.04	3.82
10	11	7.230309	TCAAAATCTTTCCACATGTCATACACA	59.770	33.333	0.00	0.00	40.18	3.72
11	12	7.592938	TCAAAATCTTTCCACATGTCATACAC	58.407	34.615	0.00	0.00	0.00	2.90
12	13	7.757941	TCAAAATCTTTCCACATGTCATACA	57.242	32.000	0.00	0.00	0.00	2.29
31	32	9.927668	CCTAAGGCAAGATTCTTTTATTCAAAA	57.072	29.630	0.00	0.00	32.73	2.44
32	33	9.088987	ACCTAAGGCAAGATTCTTTTATTCAAA	57.911	29.630	0.00	0.00	0.00	2.69
33	34	8.522830	CACCTAAGGCAAGATTCTTTTATTCAA	58.477	33.333	0.00	0.00	0.00	2.69
34	35	7.362920	GCACCTAAGGCAAGATTCTTTTATTCA	60.363	37.037	0.00	0.00	0.00	2.57
35	36	6.975197	GCACCTAAGGCAAGATTCTTTTATTC	59.025	38.462	0.00	0.00	0.00	1.75
36	37	6.665248	AGCACCTAAGGCAAGATTCTTTTATT	59.335	34.615	0.00	0.00	0.00	1.40
37	38	6.190587	AGCACCTAAGGCAAGATTCTTTTAT	58.809	36.000	0.00	0.00	0.00	1.40
38	39	5.570320	AGCACCTAAGGCAAGATTCTTTTA	58.430	37.500	0.00	0.00	0.00	1.52
39	40	4.411013	AGCACCTAAGGCAAGATTCTTTT	58.589	39.130	0.00	0.00	0.00	2.27
40	41	4.013050	GAGCACCTAAGGCAAGATTCTTT	58.987	43.478	0.00	0.00	0.00	2.52
41	42	3.009473	TGAGCACCTAAGGCAAGATTCTT	59.991	43.478	0.00	0.00	0.00	2.52
42	43	2.573462	TGAGCACCTAAGGCAAGATTCT	59.427	45.455	0.00	0.00	0.00	2.40
43	44	2.991250	TGAGCACCTAAGGCAAGATTC	58.009	47.619	0.00	0.00	0.00	2.52
44	45	3.439857	TTGAGCACCTAAGGCAAGATT	57.560	42.857	0.00	0.00	0.00	2.40
45	46	3.439857	TTTGAGCACCTAAGGCAAGAT	57.560	42.857	0.00	0.00	0.00	2.40
46	47	2.949177	TTTGAGCACCTAAGGCAAGA	57.051	45.000	0.00	0.00	0.00	3.02
47	48	3.760684	AGAATTTGAGCACCTAAGGCAAG	59.239	43.478	0.00	0.00	0.00	4.01
48	49	3.766545	AGAATTTGAGCACCTAAGGCAA	58.233	40.909	0.00	0.00	0.00	4.52
49	50	3.439857	AGAATTTGAGCACCTAAGGCA	57.560	42.857	0.00	0.00	0.00	4.75
50	51	5.393135	GGTTAAGAATTTGAGCACCTAAGGC	60.393	44.000	0.00	0.00	0.00	4.35
51	52	5.946377	AGGTTAAGAATTTGAGCACCTAAGG	59.054	40.000	0.00	0.00	31.15	2.69
72	73	0.609131	CGGGCAATCCAAAGTGAGGT	60.609	55.000	0.00	0.00	34.36	3.85
682	827	1.134818	TGCCACGTGGATAGCTAACTG	60.135	52.381	38.30	7.23	37.39	3.16
812	1008	0.388520	GTGCCCCGCAATTTCACTTC	60.389	55.000	0.00	0.00	41.47	3.01
813	1009	1.112315	TGTGCCCCGCAATTTCACTT	61.112	50.000	0.00	0.00	41.47	3.16
814	1010	1.112315	TTGTGCCCCGCAATTTCACT	61.112	50.000	0.00	0.00	41.47	3.41
815	1011	0.037419	ATTGTGCCCCGCAATTTCAC	60.037	50.000	0.00	0.00	41.01	3.18
816	1012	2.360138	ATTGTGCCCCGCAATTTCA	58.640	47.368	0.00	0.00	41.01	2.69
820	1016	0.247185	CTTCAATTGTGCCCCGCAAT	59.753	50.000	5.13	0.00	44.92	3.56
821	1017	1.112315	ACTTCAATTGTGCCCCGCAA	61.112	50.000	5.13	0.00	41.47	4.85
822	1018	1.530419	ACTTCAATTGTGCCCCGCA	60.530	52.632	5.13	0.00	35.60	5.69
823	1019	1.080569	CACTTCAATTGTGCCCCGC	60.081	57.895	5.13	0.00	0.00	6.13
824	1020	0.958091	TTCACTTCAATTGTGCCCCG	59.042	50.000	5.13	0.00	35.58	5.73
825	1021	3.683365	ATTTCACTTCAATTGTGCCCC	57.317	42.857	5.13	0.00	35.58	5.80
826	1022	3.187022	GCAATTTCACTTCAATTGTGCCC	59.813	43.478	5.13	0.00	41.72	5.36
827	1023	3.120923	CGCAATTTCACTTCAATTGTGCC	60.121	43.478	5.13	0.00	42.27	5.01
828	1024	3.120923	CCGCAATTTCACTTCAATTGTGC	60.121	43.478	5.13	3.71	45.04	4.57
829	1025	3.429543	CCCGCAATTTCACTTCAATTGTG	59.570	43.478	5.13	10.59	45.57	3.33
830	1026	3.554752	CCCCGCAATTTCACTTCAATTGT	60.555	43.478	5.13	0.00	41.72	2.71
831	1027	2.995258	CCCCGCAATTTCACTTCAATTG	59.005	45.455	0.00	0.00	42.32	2.32
832	1028	2.612721	GCCCCGCAATTTCACTTCAATT	60.613	45.455	0.00	0.00	0.00	2.32
833	1029	1.066929	GCCCCGCAATTTCACTTCAAT	60.067	47.619	0.00	0.00	0.00	2.57
834	1030	0.316841	GCCCCGCAATTTCACTTCAA	59.683	50.000	0.00	0.00	0.00	2.69
835	1031	1.861542	CGCCCCGCAATTTCACTTCA	61.862	55.000	0.00	0.00	0.00	3.02
836	1032	1.154035	CGCCCCGCAATTTCACTTC	60.154	57.895	0.00	0.00	0.00	3.01
919	1115	0.326927	TGAACCGGAAATGGAGGTCC	59.673	55.000	9.46	0.00	37.26	4.46
1274	1516	2.003548	GGGAAGGAGATGGCTGGGT	61.004	63.158	0.00	0.00	0.00	4.51
1302	1571	2.194326	GGGAAGGAGATGGCTGGC	59.806	66.667	0.00	0.00	0.00	4.85
4984	7070	6.749923	AGAACAGAATAGGTTGCTTTGATC	57.250	37.500	0.00	0.00	0.00	2.92
5001	7097	9.626045	GGTTTTATGTTTGATTCCTAAGAACAG	57.374	33.333	0.00	0.00	33.97	3.16
5080	7524	5.409826	GCAGCAGATATATCTAAACACACCC	59.590	44.000	14.92	0.00	34.85	4.61
5081	7525	6.226787	AGCAGCAGATATATCTAAACACACC	58.773	40.000	14.92	0.00	34.85	4.16
5082	7526	7.571026	CAAGCAGCAGATATATCTAAACACAC	58.429	38.462	14.92	2.32	34.85	3.82
5083	7527	6.203530	GCAAGCAGCAGATATATCTAAACACA	59.796	38.462	14.92	0.00	44.79	3.72
5198	7645	2.420687	GGGACTCAATGCAGAACTAGGG	60.421	54.545	0.00	0.00	0.00	3.53
5219	7672	4.878397	ACTGAAACAAACAGGTCAGAGAAG	59.122	41.667	6.53	0.00	39.94	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.