Multiple sequence alignment - TraesCS6D01G266700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G266700 chr6D 100.000 3383 0 0 1 3383 376940044 376943426 0.000000e+00 6248.0
1 TraesCS6D01G266700 chr6D 91.538 520 27 6 2856 3360 376971788 376972305 0.000000e+00 701.0
2 TraesCS6D01G266700 chr6D 86.007 293 21 7 2997 3284 376942589 376942866 2.550000e-76 296.0
3 TraesCS6D01G266700 chr6D 86.007 293 21 7 2546 2823 376943040 376943327 2.550000e-76 296.0
4 TraesCS6D01G266700 chr6D 84.158 303 21 10 2546 2823 376971929 376972229 5.560000e-68 268.0
5 TraesCS6D01G266700 chr6A 94.462 2907 104 24 518 3383 518544808 518547698 0.000000e+00 4423.0
6 TraesCS6D01G266700 chr6A 89.247 558 31 7 2830 3383 518595280 518595812 0.000000e+00 671.0
7 TraesCS6D01G266700 chr6A 95.067 223 3 4 300 521 518544537 518544752 8.990000e-91 344.0
8 TraesCS6D01G266700 chr6A 87.296 307 24 4 2997 3303 518546857 518547148 1.500000e-88 337.0
9 TraesCS6D01G266700 chr6A 86.851 289 26 8 2546 2823 518547312 518547599 2.530000e-81 313.0
10 TraesCS6D01G266700 chr6A 89.062 256 12 5 1 240 518544250 518544505 1.530000e-78 303.0
11 TraesCS6D01G266700 chr6A 90.308 227 18 2 2606 2828 518595491 518595717 9.180000e-76 294.0
12 TraesCS6D01G266700 chr6A 86.175 217 19 3 999 1213 585467263 585467470 1.220000e-54 224.0
13 TraesCS6D01G266700 chr6B 94.990 1956 55 19 877 2823 563129599 563131520 0.000000e+00 3029.0
14 TraesCS6D01G266700 chr6B 89.895 762 28 9 3 733 563128824 563129567 0.000000e+00 935.0
15 TraesCS6D01G266700 chr6B 91.950 559 38 5 2830 3383 563142953 563143509 0.000000e+00 776.0
16 TraesCS6D01G266700 chr6B 75.371 1145 200 62 1255 2346 55336636 55337751 8.490000e-131 477.0
17 TraesCS6D01G266700 chr6B 85.831 367 22 8 2997 3360 563131257 563131596 2.480000e-96 363.0
18 TraesCS6D01G266700 chr6B 86.760 287 23 8 2546 2819 563143120 563143404 4.240000e-79 305.0
19 TraesCS6D01G266700 chrUn 75.728 1133 196 58 1255 2346 291825928 291827022 2.340000e-136 496.0
20 TraesCS6D01G266700 chrUn 75.110 1133 209 53 1255 2340 30192416 30193522 2.380000e-126 462.0
21 TraesCS6D01G266700 chr4B 75.304 1150 198 61 1255 2346 666788251 666789372 3.950000e-129 472.0
22 TraesCS6D01G266700 chr4B 84.375 64 10 0 2252 2315 404124959 404125022 2.820000e-06 63.9
23 TraesCS6D01G266700 chr5A 74.377 1124 199 61 1255 2346 667029818 667028752 6.800000e-107 398.0
24 TraesCS6D01G266700 chr5A 86.905 84 8 3 3199 3281 646197149 646197068 1.290000e-14 91.6
25 TraesCS6D01G266700 chr2D 88.479 217 14 3 999 1213 461804964 461805171 5.600000e-63 252.0
26 TraesCS6D01G266700 chr7A 90.798 163 14 1 2835 2997 217699641 217699802 2.040000e-52 217.0
27 TraesCS6D01G266700 chr7A 89.362 94 7 3 999 1092 62891232 62891322 7.670000e-22 115.0
28 TraesCS6D01G266700 chr7A 83.582 67 11 0 2249 2315 645039714 645039780 2.820000e-06 63.9
29 TraesCS6D01G266700 chr5D 88.439 173 16 1 2830 3002 548669343 548669511 4.420000e-49 206.0
30 TraesCS6D01G266700 chr5D 90.196 153 15 0 2835 2987 447249546 447249394 2.060000e-47 200.0
31 TraesCS6D01G266700 chr7D 88.957 163 16 2 2835 2997 538288113 538287953 2.060000e-47 200.0
32 TraesCS6D01G266700 chr2B 88.961 154 16 1 2835 2988 90576722 90576874 4.460000e-44 189.0
33 TraesCS6D01G266700 chr3A 87.629 97 9 3 999 1095 164400609 164400516 3.570000e-20 110.0
34 TraesCS6D01G266700 chr4D 75.484 155 25 11 2166 2315 323604097 323604243 2.820000e-06 63.9
35 TraesCS6D01G266700 chr4A 75.497 151 26 9 2169 2315 147652720 147652577 2.820000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G266700 chr6D 376940044 376943426 3382 False 2280.000000 6248 90.671333 1 3383 3 chr6D.!!$F1 3382
1 TraesCS6D01G266700 chr6D 376971788 376972305 517 False 484.500000 701 87.848000 2546 3360 2 chr6D.!!$F2 814
2 TraesCS6D01G266700 chr6A 518544250 518547698 3448 False 1144.000000 4423 90.547600 1 3383 5 chr6A.!!$F2 3382
3 TraesCS6D01G266700 chr6A 518595280 518595812 532 False 482.500000 671 89.777500 2606 3383 2 chr6A.!!$F3 777
4 TraesCS6D01G266700 chr6B 563128824 563131596 2772 False 1442.333333 3029 90.238667 3 3360 3 chr6B.!!$F2 3357
5 TraesCS6D01G266700 chr6B 563142953 563143509 556 False 540.500000 776 89.355000 2546 3383 2 chr6B.!!$F3 837
6 TraesCS6D01G266700 chr6B 55336636 55337751 1115 False 477.000000 477 75.371000 1255 2346 1 chr6B.!!$F1 1091
7 TraesCS6D01G266700 chrUn 291825928 291827022 1094 False 496.000000 496 75.728000 1255 2346 1 chrUn.!!$F2 1091
8 TraesCS6D01G266700 chrUn 30192416 30193522 1106 False 462.000000 462 75.110000 1255 2340 1 chrUn.!!$F1 1085
9 TraesCS6D01G266700 chr4B 666788251 666789372 1121 False 472.000000 472 75.304000 1255 2346 1 chr4B.!!$F2 1091
10 TraesCS6D01G266700 chr5A 667028752 667029818 1066 True 398.000000 398 74.377000 1255 2346 1 chr5A.!!$R2 1091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 201 0.682852 TCGATGTTCAAGTTCCGGGT 59.317 50.000 0.00 0.00 0.00 5.28 F
400 425 1.006220 AATCTCGTCGTGCACTGCA 60.006 52.632 16.19 0.00 35.60 4.41 F
1266 1380 0.870307 GTGATCGGCGCACGTTCTAT 60.870 55.000 21.48 9.29 44.69 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1027 1138 1.143401 GGGGCGCTGTAGTACTTCC 59.857 63.158 7.64 0.0 0.00 3.46 R
1375 1522 2.662596 GGACACCATCAGGACGCA 59.337 61.111 0.00 0.0 38.69 5.24 R
2592 2777 0.469917 CCTCGAATGGCCTGGTGTAT 59.530 55.000 3.32 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.664321 GACACGTCCGCTATGAGGGT 61.664 60.000 0.00 0.00 0.00 4.34
133 150 1.691976 TGATCTTGTTCACTGGTCGGT 59.308 47.619 0.00 0.00 0.00 4.69
161 178 2.664015 GGGGTGTAGTAGACTAGTGGG 58.336 57.143 0.00 0.00 0.00 4.61
169 186 2.170187 AGTAGACTAGTGGGTCGTCGAT 59.830 50.000 0.00 0.00 40.76 3.59
171 188 1.093159 GACTAGTGGGTCGTCGATGT 58.907 55.000 0.00 0.00 0.00 3.06
184 201 0.682852 TCGATGTTCAAGTTCCGGGT 59.317 50.000 0.00 0.00 0.00 5.28
268 285 4.229096 GCAAACATCTGCGATTCTCAAAA 58.771 39.130 0.00 0.00 31.50 2.44
269 286 4.089065 GCAAACATCTGCGATTCTCAAAAC 59.911 41.667 0.00 0.00 31.50 2.43
270 287 5.214417 CAAACATCTGCGATTCTCAAAACA 58.786 37.500 0.00 0.00 0.00 2.83
271 288 5.437289 AACATCTGCGATTCTCAAAACAA 57.563 34.783 0.00 0.00 0.00 2.83
272 289 5.437289 ACATCTGCGATTCTCAAAACAAA 57.563 34.783 0.00 0.00 0.00 2.83
273 290 5.215160 ACATCTGCGATTCTCAAAACAAAC 58.785 37.500 0.00 0.00 0.00 2.93
274 291 4.891627 TCTGCGATTCTCAAAACAAACA 57.108 36.364 0.00 0.00 0.00 2.83
341 366 2.438975 ATGCAGTCCATGGCCACG 60.439 61.111 8.16 0.00 31.48 4.94
399 424 1.687494 GGAATCTCGTCGTGCACTGC 61.687 60.000 16.19 6.36 0.00 4.40
400 425 1.006220 AATCTCGTCGTGCACTGCA 60.006 52.632 16.19 0.00 35.60 4.41
625 713 1.944430 GCACGTTGGTTAAGGGGAGAG 60.944 57.143 0.00 0.00 0.00 3.20
717 809 2.552743 GTCACCTTTTGGCTGTTAGTCC 59.447 50.000 0.00 0.00 45.59 3.85
746 838 7.615582 TTGTTATGCATGAAACAAACCAAAA 57.384 28.000 20.36 2.07 41.34 2.44
748 840 7.637229 TGTTATGCATGAAACAAACCAAAATG 58.363 30.769 10.16 0.00 32.86 2.32
749 841 4.548991 TGCATGAAACAAACCAAAATGC 57.451 36.364 0.00 0.00 39.44 3.56
843 937 1.903877 CGGTGCCCTCTTCCATCTGT 61.904 60.000 0.00 0.00 0.00 3.41
851 945 3.713764 CCCTCTTCCATCTGTTATCCAGT 59.286 47.826 0.00 0.00 42.19 4.00
852 946 4.444022 CCCTCTTCCATCTGTTATCCAGTG 60.444 50.000 0.00 0.00 42.19 3.66
854 948 3.519107 TCTTCCATCTGTTATCCAGTGCA 59.481 43.478 0.00 0.00 42.19 4.57
859 953 2.256306 TCTGTTATCCAGTGCACCTCA 58.744 47.619 14.63 0.00 42.19 3.86
860 954 2.028112 TCTGTTATCCAGTGCACCTCAC 60.028 50.000 14.63 2.81 45.98 3.51
868 962 4.357947 TGCACCTCACTCGGACGC 62.358 66.667 0.00 0.00 0.00 5.19
870 964 2.338620 CACCTCACTCGGACGCAA 59.661 61.111 0.00 0.00 0.00 4.85
871 965 2.022129 CACCTCACTCGGACGCAAC 61.022 63.158 0.00 0.00 0.00 4.17
872 966 2.805353 CCTCACTCGGACGCAACG 60.805 66.667 0.00 0.00 0.00 4.10
876 970 1.138036 CACTCGGACGCAACGGATA 59.862 57.895 0.00 0.00 0.00 2.59
877 971 1.138047 CACTCGGACGCAACGGATAC 61.138 60.000 0.00 0.00 0.00 2.24
1035 1146 2.261671 CGGTGCGCTGGAAGTACT 59.738 61.111 9.73 0.00 35.30 2.73
1036 1147 1.509463 CGGTGCGCTGGAAGTACTA 59.491 57.895 9.73 0.00 35.30 1.82
1266 1380 0.870307 GTGATCGGCGCACGTTCTAT 60.870 55.000 21.48 9.29 44.69 1.98
2430 2615 1.480545 GTGGGGTTTTGTCTTTGTGCT 59.519 47.619 0.00 0.00 0.00 4.40
2431 2616 1.480137 TGGGGTTTTGTCTTTGTGCTG 59.520 47.619 0.00 0.00 0.00 4.41
2432 2617 1.570813 GGGTTTTGTCTTTGTGCTGC 58.429 50.000 0.00 0.00 0.00 5.25
2433 2618 1.136891 GGGTTTTGTCTTTGTGCTGCT 59.863 47.619 0.00 0.00 0.00 4.24
2434 2619 2.195922 GGTTTTGTCTTTGTGCTGCTG 58.804 47.619 0.00 0.00 0.00 4.41
2510 2695 1.079127 CAGCCGTGGGGTTCAGTAG 60.079 63.158 0.00 0.00 34.97 2.57
2539 2724 3.938963 TGTCTGCCGTTATCCATTTTCTC 59.061 43.478 0.00 0.00 0.00 2.87
2540 2725 3.938963 GTCTGCCGTTATCCATTTTCTCA 59.061 43.478 0.00 0.00 0.00 3.27
2596 2781 7.795482 AAAAAGTTGCACAGTACTGTATACA 57.205 32.000 27.48 21.50 42.83 2.29
2599 2784 4.282449 AGTTGCACAGTACTGTATACACCA 59.718 41.667 27.48 14.33 42.83 4.17
2600 2785 4.450082 TGCACAGTACTGTATACACCAG 57.550 45.455 27.48 13.87 42.83 4.00
2601 2786 3.194755 TGCACAGTACTGTATACACCAGG 59.805 47.826 27.48 13.18 42.83 4.45
2603 2788 2.764572 ACAGTACTGTATACACCAGGCC 59.235 50.000 26.91 0.00 42.90 5.19
2605 2790 3.388024 CAGTACTGTATACACCAGGCCAT 59.612 47.826 15.06 0.00 34.16 4.40
2606 2791 4.037927 AGTACTGTATACACCAGGCCATT 58.962 43.478 5.01 0.00 34.16 3.16
2607 2792 3.560636 ACTGTATACACCAGGCCATTC 57.439 47.619 5.01 0.00 34.16 2.67
2608 2793 2.158957 ACTGTATACACCAGGCCATTCG 60.159 50.000 5.01 0.00 34.16 3.34
2609 2794 2.102420 CTGTATACACCAGGCCATTCGA 59.898 50.000 5.01 0.00 0.00 3.71
2610 2795 2.102420 TGTATACACCAGGCCATTCGAG 59.898 50.000 5.01 0.00 0.00 4.04
2611 2796 0.469917 ATACACCAGGCCATTCGAGG 59.530 55.000 5.01 0.00 0.00 4.63
2612 2797 1.622607 TACACCAGGCCATTCGAGGG 61.623 60.000 5.01 1.05 0.00 4.30
2613 2798 2.610859 ACCAGGCCATTCGAGGGT 60.611 61.111 5.01 0.00 0.00 4.34
2614 2799 2.231380 ACCAGGCCATTCGAGGGTT 61.231 57.895 5.01 0.00 0.00 4.11
2615 2800 1.000896 CCAGGCCATTCGAGGGTTT 60.001 57.895 5.01 0.00 0.00 3.27
2616 2801 0.254747 CCAGGCCATTCGAGGGTTTA 59.745 55.000 5.01 0.00 0.00 2.01
2620 2805 1.388547 GCCATTCGAGGGTTTATGCA 58.611 50.000 7.01 0.00 0.00 3.96
2621 2806 1.334869 GCCATTCGAGGGTTTATGCAG 59.665 52.381 7.01 0.00 0.00 4.41
2622 2807 2.643551 CCATTCGAGGGTTTATGCAGT 58.356 47.619 0.00 0.00 0.00 4.40
2623 2808 2.355756 CCATTCGAGGGTTTATGCAGTG 59.644 50.000 0.00 0.00 0.00 3.66
2624 2809 1.448985 TTCGAGGGTTTATGCAGTGC 58.551 50.000 8.58 8.58 0.00 4.40
2625 2810 0.613260 TCGAGGGTTTATGCAGTGCT 59.387 50.000 17.60 4.48 0.00 4.40
2626 2811 1.828595 TCGAGGGTTTATGCAGTGCTA 59.171 47.619 17.60 3.01 0.00 3.49
2627 2812 2.159099 TCGAGGGTTTATGCAGTGCTAG 60.159 50.000 17.60 0.00 0.00 3.42
2628 2813 2.418746 CGAGGGTTTATGCAGTGCTAGT 60.419 50.000 17.60 5.10 0.00 2.57
2629 2814 3.181479 CGAGGGTTTATGCAGTGCTAGTA 60.181 47.826 17.60 4.08 0.00 1.82
2630 2815 4.120589 GAGGGTTTATGCAGTGCTAGTAC 58.879 47.826 17.60 2.24 0.00 2.73
2631 2816 3.775316 AGGGTTTATGCAGTGCTAGTACT 59.225 43.478 17.60 7.78 0.00 2.73
2647 2832 4.625607 AGTACTAGCAAAGCAGTTTCCT 57.374 40.909 0.00 0.00 0.00 3.36
2648 2833 4.974399 AGTACTAGCAAAGCAGTTTCCTT 58.026 39.130 0.00 0.00 0.00 3.36
2649 2834 4.998033 AGTACTAGCAAAGCAGTTTCCTTC 59.002 41.667 0.00 0.00 0.00 3.46
2650 2835 3.149981 ACTAGCAAAGCAGTTTCCTTCC 58.850 45.455 0.00 0.00 0.00 3.46
2654 2839 3.197549 AGCAAAGCAGTTTCCTTCCAAAA 59.802 39.130 0.00 0.00 0.00 2.44
2655 2840 3.557185 GCAAAGCAGTTTCCTTCCAAAAG 59.443 43.478 0.00 0.00 0.00 2.27
2657 2842 5.418676 CAAAGCAGTTTCCTTCCAAAAGAA 58.581 37.500 0.00 0.00 34.14 2.52
2662 2847 6.070824 AGCAGTTTCCTTCCAAAAGAAAGAAA 60.071 34.615 0.00 0.00 40.84 2.52
2663 2848 6.593770 GCAGTTTCCTTCCAAAAGAAAGAAAA 59.406 34.615 1.82 0.00 43.31 2.29
2664 2849 7.201556 GCAGTTTCCTTCCAAAAGAAAGAAAAG 60.202 37.037 1.82 0.69 43.31 2.27
2667 2852 8.656849 GTTTCCTTCCAAAAGAAAGAAAAGAAC 58.343 33.333 1.82 0.00 43.31 3.01
2668 2853 7.718334 TCCTTCCAAAAGAAAGAAAAGAACT 57.282 32.000 0.00 0.00 34.14 3.01
2669 2854 8.817092 TCCTTCCAAAAGAAAGAAAAGAACTA 57.183 30.769 0.00 0.00 34.14 2.24
2670 2855 9.250246 TCCTTCCAAAAGAAAGAAAAGAACTAA 57.750 29.630 0.00 0.00 34.14 2.24
2685 2870 9.692749 GAAAAGAACTAAAAATTAGAACCAGGG 57.307 33.333 4.24 0.00 0.00 4.45
2686 2871 9.429109 AAAAGAACTAAAAATTAGAACCAGGGA 57.571 29.630 4.24 0.00 0.00 4.20
2687 2872 9.601810 AAAGAACTAAAAATTAGAACCAGGGAT 57.398 29.630 4.24 0.00 0.00 3.85
2702 2887 9.853177 AGAACCAGGGATATTTGATAGTTTTAG 57.147 33.333 0.00 0.00 0.00 1.85
2704 2889 9.628500 AACCAGGGATATTTGATAGTTTTAGAC 57.372 33.333 0.00 0.00 0.00 2.59
2706 2891 9.277783 CCAGGGATATTTGATAGTTTTAGACAG 57.722 37.037 0.00 0.00 0.00 3.51
2707 2892 8.778358 CAGGGATATTTGATAGTTTTAGACAGC 58.222 37.037 0.00 0.00 0.00 4.40
2708 2893 8.494433 AGGGATATTTGATAGTTTTAGACAGCA 58.506 33.333 0.00 0.00 0.00 4.41
2709 2894 8.778358 GGGATATTTGATAGTTTTAGACAGCAG 58.222 37.037 0.00 0.00 0.00 4.24
2710 2895 9.547753 GGATATTTGATAGTTTTAGACAGCAGA 57.452 33.333 0.00 0.00 0.00 4.26
2714 2899 9.678260 ATTTGATAGTTTTAGACAGCAGATTCT 57.322 29.630 0.00 0.00 0.00 2.40
2715 2900 8.709386 TTGATAGTTTTAGACAGCAGATTCTC 57.291 34.615 0.00 0.00 0.00 2.87
2717 2902 7.761704 TGATAGTTTTAGACAGCAGATTCTCAC 59.238 37.037 0.00 0.00 0.00 3.51
2719 2904 5.931146 AGTTTTAGACAGCAGATTCTCACAG 59.069 40.000 0.00 0.00 0.00 3.66
2721 2906 5.728637 TTAGACAGCAGATTCTCACAGAA 57.271 39.130 0.00 0.00 38.78 3.02
2723 2908 4.965814 AGACAGCAGATTCTCACAGAAAA 58.034 39.130 0.00 0.00 37.82 2.29
2724 2909 5.371526 AGACAGCAGATTCTCACAGAAAAA 58.628 37.500 0.00 0.00 37.82 1.94
2767 2952 7.396540 ACTATTAGAAATCAACTTTGCCAGG 57.603 36.000 0.00 0.00 0.00 4.45
2768 2953 5.665916 ATTAGAAATCAACTTTGCCAGGG 57.334 39.130 0.00 0.00 0.00 4.45
2771 2956 3.575687 AGAAATCAACTTTGCCAGGGAAG 59.424 43.478 0.00 0.00 0.00 3.46
2772 2957 1.260544 ATCAACTTTGCCAGGGAAGC 58.739 50.000 0.00 0.00 0.00 3.86
2773 2958 0.185901 TCAACTTTGCCAGGGAAGCT 59.814 50.000 0.00 0.00 0.00 3.74
2774 2959 1.423541 TCAACTTTGCCAGGGAAGCTA 59.576 47.619 0.00 0.00 0.00 3.32
2776 2961 2.627699 CAACTTTGCCAGGGAAGCTAAA 59.372 45.455 0.00 0.00 0.00 1.85
2778 2963 3.092301 ACTTTGCCAGGGAAGCTAAATC 58.908 45.455 0.00 0.00 0.00 2.17
2779 2964 3.245407 ACTTTGCCAGGGAAGCTAAATCT 60.245 43.478 0.00 0.00 0.00 2.40
2780 2965 4.018415 ACTTTGCCAGGGAAGCTAAATCTA 60.018 41.667 0.00 0.00 0.00 1.98
2781 2966 3.845781 TGCCAGGGAAGCTAAATCTAG 57.154 47.619 0.00 0.00 0.00 2.43
2782 2967 3.115390 TGCCAGGGAAGCTAAATCTAGT 58.885 45.455 0.00 0.00 0.00 2.57
2783 2968 3.523564 TGCCAGGGAAGCTAAATCTAGTT 59.476 43.478 0.00 0.00 0.00 2.24
2787 2972 5.339200 CCAGGGAAGCTAAATCTAGTTCCAA 60.339 44.000 7.97 0.00 37.22 3.53
2788 2973 5.586643 CAGGGAAGCTAAATCTAGTTCCAAC 59.413 44.000 7.97 0.00 37.22 3.77
2789 2974 4.882427 GGGAAGCTAAATCTAGTTCCAACC 59.118 45.833 7.97 0.00 37.22 3.77
2790 2975 4.882427 GGAAGCTAAATCTAGTTCCAACCC 59.118 45.833 0.00 0.00 36.42 4.11
2791 2976 5.497474 GAAGCTAAATCTAGTTCCAACCCA 58.503 41.667 0.00 0.00 0.00 4.51
2792 2977 5.717119 AGCTAAATCTAGTTCCAACCCAT 57.283 39.130 0.00 0.00 0.00 4.00
2793 2978 6.079712 AGCTAAATCTAGTTCCAACCCATT 57.920 37.500 0.00 0.00 0.00 3.16
2795 2980 6.954102 AGCTAAATCTAGTTCCAACCCATTTT 59.046 34.615 0.00 0.00 0.00 1.82
2800 2985 6.588719 TCTAGTTCCAACCCATTTTCAATG 57.411 37.500 0.00 0.00 0.00 2.82
2801 2986 4.006780 AGTTCCAACCCATTTTCAATGC 57.993 40.909 0.00 0.00 0.00 3.56
2802 2987 3.390639 AGTTCCAACCCATTTTCAATGCA 59.609 39.130 0.00 0.00 0.00 3.96
2803 2988 4.133078 GTTCCAACCCATTTTCAATGCAA 58.867 39.130 0.00 0.00 0.00 4.08
2805 2990 4.983053 TCCAACCCATTTTCAATGCAATT 58.017 34.783 0.00 0.00 36.63 2.32
2819 3004 5.410355 AATGCAATTGGCTGAAGTATGTT 57.590 34.783 7.72 0.00 45.15 2.71
2820 3005 4.439305 TGCAATTGGCTGAAGTATGTTC 57.561 40.909 7.72 0.00 45.15 3.18
2821 3006 3.825585 TGCAATTGGCTGAAGTATGTTCA 59.174 39.130 7.72 0.00 45.15 3.18
2822 3007 4.082625 TGCAATTGGCTGAAGTATGTTCAG 60.083 41.667 7.72 12.97 46.42 3.02
2823 3008 4.676196 GCAATTGGCTGAAGTATGTTCAGG 60.676 45.833 17.02 5.08 44.46 3.86
2829 3014 5.818136 GCTGAAGTATGTTCAGGCATAAA 57.182 39.130 17.02 0.00 44.46 1.40
2830 3015 6.194796 GCTGAAGTATGTTCAGGCATAAAA 57.805 37.500 17.02 0.00 44.46 1.52
2831 3016 6.799512 GCTGAAGTATGTTCAGGCATAAAAT 58.200 36.000 17.02 0.00 44.46 1.82
2833 3018 7.015226 TGAAGTATGTTCAGGCATAAAATCG 57.985 36.000 0.00 0.00 33.67 3.34
2880 3069 5.174037 TCCACTTTACGAAGATCCCATTT 57.826 39.130 0.00 0.00 36.69 2.32
2936 3125 7.822822 GCTAATAAAACCTACTCCTTCAACTCA 59.177 37.037 0.00 0.00 0.00 3.41
3225 3432 6.144402 ACAAACTATTGAAAATCAGCTTTGCG 59.856 34.615 0.00 0.00 38.94 4.85
3267 3474 3.685756 CCGAGCCATTTTCAATGCAATTT 59.314 39.130 0.00 0.00 31.22 1.82
3368 3577 4.704057 AGAGAAAGGACTCAAATCAATGCC 59.296 41.667 0.00 0.00 39.14 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.253832 TCTTTAATCAGATTGGGCTAATTTGAA 57.746 29.630 18.28 3.23 41.51 2.69
161 178 1.385743 CGGAACTTGAACATCGACGAC 59.614 52.381 0.00 0.00 0.00 4.34
169 186 2.166664 CCAAAAACCCGGAACTTGAACA 59.833 45.455 0.73 0.00 0.00 3.18
171 188 1.757699 CCCAAAAACCCGGAACTTGAA 59.242 47.619 0.73 0.00 0.00 2.69
184 201 3.143728 GTCTCGGTAGAAAGCCCAAAAA 58.856 45.455 0.00 0.00 32.16 1.94
283 300 6.734104 ATACTGAGAGCAGAATTTTGTGTC 57.266 37.500 0.00 0.00 45.17 3.67
284 301 6.939163 AGAATACTGAGAGCAGAATTTTGTGT 59.061 34.615 0.00 0.00 45.17 3.72
286 303 6.939163 ACAGAATACTGAGAGCAGAATTTTGT 59.061 34.615 0.00 0.00 46.03 2.83
625 713 0.884704 TCGCTTGACTTGTTGCCTCC 60.885 55.000 0.00 0.00 0.00 4.30
717 809 3.906998 TGTTTCATGCATAACAAACCCG 58.093 40.909 11.72 0.00 31.75 5.28
746 838 1.369091 GACGGAAATGACAGGCGCAT 61.369 55.000 10.83 0.00 0.00 4.73
748 840 2.750888 GGACGGAAATGACAGGCGC 61.751 63.158 0.00 0.00 0.00 6.53
749 841 2.106683 GGGACGGAAATGACAGGCG 61.107 63.158 0.00 0.00 0.00 5.52
851 945 4.357947 GCGTCCGAGTGAGGTGCA 62.358 66.667 0.00 0.00 35.15 4.57
852 946 3.858868 TTGCGTCCGAGTGAGGTGC 62.859 63.158 0.00 0.00 35.44 5.01
854 948 2.338984 GTTGCGTCCGAGTGAGGT 59.661 61.111 0.00 0.00 0.00 3.85
859 953 1.138247 GTATCCGTTGCGTCCGAGT 59.862 57.895 0.00 0.00 0.00 4.18
860 954 1.937846 CGTATCCGTTGCGTCCGAG 60.938 63.158 0.00 0.00 0.00 4.63
862 956 3.613702 GCGTATCCGTTGCGTCCG 61.614 66.667 0.00 0.00 35.67 4.79
864 958 2.095847 TTGGCGTATCCGTTGCGTC 61.096 57.895 0.00 0.00 38.64 5.19
865 959 2.048033 TTGGCGTATCCGTTGCGT 60.048 55.556 0.00 0.00 37.80 5.24
866 960 2.398036 GTTGGCGTATCCGTTGCG 59.602 61.111 0.00 0.00 37.80 4.85
868 962 0.956410 TTGGGTTGGCGTATCCGTTG 60.956 55.000 0.00 0.00 37.80 4.10
870 964 0.463116 GATTGGGTTGGCGTATCCGT 60.463 55.000 0.00 0.00 37.80 4.69
871 965 1.164041 GGATTGGGTTGGCGTATCCG 61.164 60.000 0.00 0.00 37.80 4.18
872 966 0.822121 GGGATTGGGTTGGCGTATCC 60.822 60.000 0.00 0.00 35.18 2.59
878 972 3.758931 GTGCGGGATTGGGTTGGC 61.759 66.667 0.00 0.00 0.00 4.52
879 973 3.068064 GGTGCGGGATTGGGTTGG 61.068 66.667 0.00 0.00 0.00 3.77
880 974 3.439540 CGGTGCGGGATTGGGTTG 61.440 66.667 0.00 0.00 0.00 3.77
993 1104 4.337060 CGCGATGGCATGCATGGG 62.337 66.667 27.34 9.94 39.92 4.00
1027 1138 1.143401 GGGGCGCTGTAGTACTTCC 59.857 63.158 7.64 0.00 0.00 3.46
1034 1145 4.554363 CGTCTCGGGGCGCTGTAG 62.554 72.222 7.64 6.15 0.00 2.74
1266 1380 2.987547 GTCACCTCCGGGTCGTCA 60.988 66.667 0.00 0.00 45.41 4.35
1375 1522 2.662596 GGACACCATCAGGACGCA 59.337 61.111 0.00 0.00 38.69 5.24
1662 1812 4.657824 ACGACGAGGTTGTGGCCG 62.658 66.667 0.00 0.00 0.00 6.13
2414 2598 2.195922 CAGCAGCACAAAGACAAAACC 58.804 47.619 0.00 0.00 0.00 3.27
2432 2617 4.021631 CAGCCACGCACAGCACAG 62.022 66.667 0.00 0.00 0.00 3.66
2468 2653 5.840940 AGTACATGACTTTCGTTGCTAAC 57.159 39.130 0.00 0.00 33.13 2.34
2510 2695 3.876914 TGGATAACGGCAGACATCAAATC 59.123 43.478 0.00 0.00 0.00 2.17
2539 2724 8.911662 GTTACTGTGCAACTTTTTATTGGTATG 58.088 33.333 0.00 0.00 38.04 2.39
2540 2725 8.856103 AGTTACTGTGCAACTTTTTATTGGTAT 58.144 29.630 0.00 0.00 38.04 2.73
2581 2766 3.430374 GGCCTGGTGTATACAGTACTGTG 60.430 52.174 33.77 17.17 44.63 3.66
2589 2774 2.102420 CTCGAATGGCCTGGTGTATACA 59.898 50.000 3.32 0.08 0.00 2.29
2590 2775 2.548067 CCTCGAATGGCCTGGTGTATAC 60.548 54.545 3.32 0.00 0.00 1.47
2591 2776 1.691976 CCTCGAATGGCCTGGTGTATA 59.308 52.381 3.32 0.00 0.00 1.47
2592 2777 0.469917 CCTCGAATGGCCTGGTGTAT 59.530 55.000 3.32 0.00 0.00 2.29
2593 2778 1.622607 CCCTCGAATGGCCTGGTGTA 61.623 60.000 3.32 0.00 0.00 2.90
2595 2780 2.124570 CCCTCGAATGGCCTGGTG 60.125 66.667 3.32 0.00 0.00 4.17
2596 2781 1.789576 AAACCCTCGAATGGCCTGGT 61.790 55.000 3.32 0.00 0.00 4.00
2599 2784 1.750682 GCATAAACCCTCGAATGGCCT 60.751 52.381 3.32 0.00 0.00 5.19
2600 2785 0.668535 GCATAAACCCTCGAATGGCC 59.331 55.000 0.00 0.00 0.00 5.36
2601 2786 1.334869 CTGCATAAACCCTCGAATGGC 59.665 52.381 0.63 0.00 0.00 4.40
2603 2788 2.223340 GCACTGCATAAACCCTCGAATG 60.223 50.000 0.00 0.00 0.00 2.67
2605 2790 1.003118 AGCACTGCATAAACCCTCGAA 59.997 47.619 3.30 0.00 0.00 3.71
2606 2791 0.613260 AGCACTGCATAAACCCTCGA 59.387 50.000 3.30 0.00 0.00 4.04
2607 2792 2.205074 CTAGCACTGCATAAACCCTCG 58.795 52.381 3.30 0.00 0.00 4.63
2608 2793 3.268023 ACTAGCACTGCATAAACCCTC 57.732 47.619 3.30 0.00 0.00 4.30
2609 2794 3.775316 AGTACTAGCACTGCATAAACCCT 59.225 43.478 3.30 0.00 0.00 4.34
2610 2795 4.138487 AGTACTAGCACTGCATAAACCC 57.862 45.455 3.30 0.00 0.00 4.11
2624 2809 5.725362 AGGAAACTGCTTTGCTAGTACTAG 58.275 41.667 23.25 23.25 41.13 2.57
2625 2810 5.740290 AGGAAACTGCTTTGCTAGTACTA 57.260 39.130 1.89 1.89 41.13 1.82
2626 2811 4.625607 AGGAAACTGCTTTGCTAGTACT 57.374 40.909 0.00 0.00 41.13 2.73
2627 2812 4.154375 GGAAGGAAACTGCTTTGCTAGTAC 59.846 45.833 0.00 0.00 42.68 2.73
2628 2813 4.202419 TGGAAGGAAACTGCTTTGCTAGTA 60.202 41.667 0.00 0.00 42.68 1.82
2629 2814 3.149981 GGAAGGAAACTGCTTTGCTAGT 58.850 45.455 0.00 0.00 42.68 2.57
2630 2815 3.149196 TGGAAGGAAACTGCTTTGCTAG 58.851 45.455 0.00 0.00 42.68 3.42
2631 2816 3.222173 TGGAAGGAAACTGCTTTGCTA 57.778 42.857 0.00 0.00 42.68 3.49
2636 2821 5.422012 TCTTTCTTTTGGAAGGAAACTGCTT 59.578 36.000 0.00 0.00 42.68 3.91
2637 2822 4.956075 TCTTTCTTTTGGAAGGAAACTGCT 59.044 37.500 0.00 0.00 42.68 4.24
2638 2823 5.262588 TCTTTCTTTTGGAAGGAAACTGC 57.737 39.130 0.00 0.00 42.68 4.40
2644 2829 7.718334 AGTTCTTTTCTTTCTTTTGGAAGGA 57.282 32.000 0.00 0.00 38.09 3.36
2676 2861 9.853177 CTAAAACTATCAAATATCCCTGGTTCT 57.147 33.333 0.00 0.00 0.00 3.01
2677 2862 9.847224 TCTAAAACTATCAAATATCCCTGGTTC 57.153 33.333 0.00 0.00 0.00 3.62
2678 2863 9.628500 GTCTAAAACTATCAAATATCCCTGGTT 57.372 33.333 0.00 0.00 0.00 3.67
2679 2864 8.778059 TGTCTAAAACTATCAAATATCCCTGGT 58.222 33.333 0.00 0.00 0.00 4.00
2680 2865 9.277783 CTGTCTAAAACTATCAAATATCCCTGG 57.722 37.037 0.00 0.00 0.00 4.45
2681 2866 8.778358 GCTGTCTAAAACTATCAAATATCCCTG 58.222 37.037 0.00 0.00 0.00 4.45
2682 2867 8.494433 TGCTGTCTAAAACTATCAAATATCCCT 58.506 33.333 0.00 0.00 0.00 4.20
2683 2868 8.677148 TGCTGTCTAAAACTATCAAATATCCC 57.323 34.615 0.00 0.00 0.00 3.85
2684 2869 9.547753 TCTGCTGTCTAAAACTATCAAATATCC 57.452 33.333 0.00 0.00 0.00 2.59
2690 2875 8.314021 TGAGAATCTGCTGTCTAAAACTATCAA 58.686 33.333 0.00 0.00 34.92 2.57
2691 2876 7.761704 GTGAGAATCTGCTGTCTAAAACTATCA 59.238 37.037 0.00 0.00 34.92 2.15
2692 2877 7.761704 TGTGAGAATCTGCTGTCTAAAACTATC 59.238 37.037 0.00 0.00 34.92 2.08
2693 2878 7.615403 TGTGAGAATCTGCTGTCTAAAACTAT 58.385 34.615 0.00 0.00 34.92 2.12
2695 2880 5.858381 TGTGAGAATCTGCTGTCTAAAACT 58.142 37.500 0.00 0.00 34.92 2.66
2696 2881 5.928839 TCTGTGAGAATCTGCTGTCTAAAAC 59.071 40.000 0.00 0.00 34.92 2.43
2697 2882 6.101650 TCTGTGAGAATCTGCTGTCTAAAA 57.898 37.500 0.00 0.00 34.92 1.52
2698 2883 5.728637 TCTGTGAGAATCTGCTGTCTAAA 57.271 39.130 0.00 0.00 34.92 1.85
2699 2884 5.728637 TTCTGTGAGAATCTGCTGTCTAA 57.271 39.130 0.00 0.00 34.92 2.10
2700 2885 5.728637 TTTCTGTGAGAATCTGCTGTCTA 57.271 39.130 0.00 0.00 33.67 2.59
2701 2886 4.613925 TTTCTGTGAGAATCTGCTGTCT 57.386 40.909 0.00 0.00 33.67 3.41
2702 2887 5.679734 TTTTTCTGTGAGAATCTGCTGTC 57.320 39.130 0.00 0.00 33.67 3.51
2742 2927 7.093771 CCCTGGCAAAGTTGATTTCTAATAGTT 60.094 37.037 0.00 0.00 0.00 2.24
2743 2928 6.378280 CCCTGGCAAAGTTGATTTCTAATAGT 59.622 38.462 0.00 0.00 0.00 2.12
2744 2929 6.603201 TCCCTGGCAAAGTTGATTTCTAATAG 59.397 38.462 0.00 0.00 0.00 1.73
2745 2930 6.489603 TCCCTGGCAAAGTTGATTTCTAATA 58.510 36.000 0.00 0.00 0.00 0.98
2747 2932 4.735369 TCCCTGGCAAAGTTGATTTCTAA 58.265 39.130 0.00 0.00 0.00 2.10
2748 2933 4.380843 TCCCTGGCAAAGTTGATTTCTA 57.619 40.909 0.00 0.00 0.00 2.10
2749 2934 3.243359 TCCCTGGCAAAGTTGATTTCT 57.757 42.857 0.00 0.00 0.00 2.52
2750 2935 3.862264 GCTTCCCTGGCAAAGTTGATTTC 60.862 47.826 8.33 0.00 0.00 2.17
2752 2937 1.620323 GCTTCCCTGGCAAAGTTGATT 59.380 47.619 8.33 0.00 0.00 2.57
2753 2938 1.203100 AGCTTCCCTGGCAAAGTTGAT 60.203 47.619 8.33 0.00 0.00 2.57
2755 2940 1.909700 TAGCTTCCCTGGCAAAGTTG 58.090 50.000 0.00 0.00 0.00 3.16
2756 2941 2.675658 TTAGCTTCCCTGGCAAAGTT 57.324 45.000 0.00 5.62 0.00 2.66
2757 2942 2.675658 TTTAGCTTCCCTGGCAAAGT 57.324 45.000 0.00 0.73 0.00 2.66
2759 2944 3.456380 AGATTTAGCTTCCCTGGCAAA 57.544 42.857 0.00 0.00 0.00 3.68
2760 2945 3.523564 ACTAGATTTAGCTTCCCTGGCAA 59.476 43.478 0.00 0.00 0.00 4.52
2761 2946 3.115390 ACTAGATTTAGCTTCCCTGGCA 58.885 45.455 0.00 0.00 0.00 4.92
2762 2947 3.847671 ACTAGATTTAGCTTCCCTGGC 57.152 47.619 0.00 0.00 0.00 4.85
2763 2948 4.164221 TGGAACTAGATTTAGCTTCCCTGG 59.836 45.833 15.63 0.00 36.86 4.45
2764 2949 5.359194 TGGAACTAGATTTAGCTTCCCTG 57.641 43.478 15.63 0.00 36.86 4.45
2767 2952 4.882427 GGGTTGGAACTAGATTTAGCTTCC 59.118 45.833 13.27 13.27 37.47 3.46
2768 2953 5.497474 TGGGTTGGAACTAGATTTAGCTTC 58.503 41.667 0.00 0.00 0.00 3.86
2771 2956 6.775594 AAATGGGTTGGAACTAGATTTAGC 57.224 37.500 0.00 0.00 0.00 3.09
2772 2957 8.348285 TGAAAATGGGTTGGAACTAGATTTAG 57.652 34.615 0.00 0.00 0.00 1.85
2773 2958 8.713708 TTGAAAATGGGTTGGAACTAGATTTA 57.286 30.769 0.00 0.00 0.00 1.40
2774 2959 7.610580 TTGAAAATGGGTTGGAACTAGATTT 57.389 32.000 0.00 0.00 0.00 2.17
2776 2961 6.351286 GCATTGAAAATGGGTTGGAACTAGAT 60.351 38.462 0.00 0.00 0.00 1.98
2778 2963 5.170748 GCATTGAAAATGGGTTGGAACTAG 58.829 41.667 2.41 0.00 0.00 2.57
2779 2964 4.590647 TGCATTGAAAATGGGTTGGAACTA 59.409 37.500 2.41 0.00 0.00 2.24
2780 2965 3.390639 TGCATTGAAAATGGGTTGGAACT 59.609 39.130 2.41 0.00 0.00 3.01
2781 2966 3.737850 TGCATTGAAAATGGGTTGGAAC 58.262 40.909 2.41 0.00 0.00 3.62
2782 2967 4.428294 TTGCATTGAAAATGGGTTGGAA 57.572 36.364 2.41 0.00 0.00 3.53
2783 2968 4.637387 ATTGCATTGAAAATGGGTTGGA 57.363 36.364 2.41 0.00 0.00 3.53
2787 2972 3.083293 GCCAATTGCATTGAAAATGGGT 58.917 40.909 12.55 0.00 42.83 4.51
2788 2973 3.127895 CAGCCAATTGCATTGAAAATGGG 59.872 43.478 12.55 7.38 44.83 4.00
2789 2974 4.004314 TCAGCCAATTGCATTGAAAATGG 58.996 39.130 7.07 7.07 44.83 3.16
2790 2975 5.180492 ACTTCAGCCAATTGCATTGAAAATG 59.820 36.000 14.37 8.65 44.83 2.32
2791 2976 5.310451 ACTTCAGCCAATTGCATTGAAAAT 58.690 33.333 14.37 6.96 44.83 1.82
2792 2977 4.706035 ACTTCAGCCAATTGCATTGAAAA 58.294 34.783 14.37 0.51 44.83 2.29
2793 2978 4.339872 ACTTCAGCCAATTGCATTGAAA 57.660 36.364 14.37 0.00 44.83 2.69
2795 2980 4.463539 ACATACTTCAGCCAATTGCATTGA 59.536 37.500 0.00 0.43 44.83 2.57
2800 2985 4.418392 CTGAACATACTTCAGCCAATTGC 58.582 43.478 0.00 0.00 39.36 3.56
2801 2986 4.676196 GCCTGAACATACTTCAGCCAATTG 60.676 45.833 0.00 0.00 43.33 2.32
2802 2987 3.445096 GCCTGAACATACTTCAGCCAATT 59.555 43.478 4.79 0.00 43.33 2.32
2803 2988 3.019564 GCCTGAACATACTTCAGCCAAT 58.980 45.455 4.79 0.00 43.33 3.16
2805 2990 1.350684 TGCCTGAACATACTTCAGCCA 59.649 47.619 4.79 0.00 43.33 4.75
2806 2991 2.113860 TGCCTGAACATACTTCAGCC 57.886 50.000 4.79 0.00 43.33 4.85
2807 2992 5.818136 TTTATGCCTGAACATACTTCAGC 57.182 39.130 4.79 2.32 43.33 4.26
2808 2993 7.011389 TCGATTTTATGCCTGAACATACTTCAG 59.989 37.037 3.50 3.50 44.05 3.02
2810 2995 7.246674 TCGATTTTATGCCTGAACATACTTC 57.753 36.000 0.00 0.00 32.32 3.01
2811 2996 7.624360 TTCGATTTTATGCCTGAACATACTT 57.376 32.000 0.00 0.00 32.32 2.24
2812 2997 7.807977 ATTCGATTTTATGCCTGAACATACT 57.192 32.000 0.00 0.00 32.32 2.12
2813 2998 7.379529 CCAATTCGATTTTATGCCTGAACATAC 59.620 37.037 0.00 0.00 32.32 2.39
2814 2999 7.068103 ACCAATTCGATTTTATGCCTGAACATA 59.932 33.333 0.00 0.00 0.00 2.29
2815 3000 6.127366 ACCAATTCGATTTTATGCCTGAACAT 60.127 34.615 0.00 0.00 0.00 2.71
2816 3001 5.184864 ACCAATTCGATTTTATGCCTGAACA 59.815 36.000 0.00 0.00 0.00 3.18
2818 3003 5.913137 ACCAATTCGATTTTATGCCTGAA 57.087 34.783 0.00 0.00 0.00 3.02
2819 3004 5.184864 ACAACCAATTCGATTTTATGCCTGA 59.815 36.000 0.00 0.00 0.00 3.86
2820 3005 5.410067 ACAACCAATTCGATTTTATGCCTG 58.590 37.500 0.00 0.00 0.00 4.85
2821 3006 5.659440 ACAACCAATTCGATTTTATGCCT 57.341 34.783 0.00 0.00 0.00 4.75
2822 3007 7.820044 TTTACAACCAATTCGATTTTATGCC 57.180 32.000 0.00 0.00 0.00 4.40
2823 3008 8.921670 AGTTTTACAACCAATTCGATTTTATGC 58.078 29.630 0.00 0.00 32.70 3.14
2829 3014 9.840427 CTTATGAGTTTTACAACCAATTCGATT 57.160 29.630 0.00 0.00 32.70 3.34
2830 3015 8.458843 CCTTATGAGTTTTACAACCAATTCGAT 58.541 33.333 0.00 0.00 32.70 3.59
2831 3016 7.662258 TCCTTATGAGTTTTACAACCAATTCGA 59.338 33.333 0.00 0.00 32.70 3.71
2833 3018 9.788960 GATCCTTATGAGTTTTACAACCAATTC 57.211 33.333 0.00 0.00 32.70 2.17
2880 3069 5.763204 AGAAGATTACGAGCTTTTGGAACAA 59.237 36.000 0.00 0.00 35.74 2.83
3210 3414 3.542712 TCACTCGCAAAGCTGATTTTC 57.457 42.857 0.00 0.00 0.00 2.29
3211 3415 3.854784 GCTTCACTCGCAAAGCTGATTTT 60.855 43.478 0.00 0.00 43.57 1.82
3225 3432 5.892568 TCGGAACTAGATTTAGCTTCACTC 58.107 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.