Multiple sequence alignment - TraesCS6D01G265100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G265100 chr6D 100.000 3643 0 0 1 3643 374122082 374118440 0.000000e+00 6728.0
1 TraesCS6D01G265100 chr6B 91.365 3173 126 55 513 3583 561286485 561283359 0.000000e+00 4205.0
2 TraesCS6D01G265100 chr6B 86.649 382 25 11 1 370 561287005 561286638 2.040000e-107 399.0
3 TraesCS6D01G265100 chr6B 77.622 143 9 6 407 540 561286632 561286504 8.440000e-07 65.8
4 TraesCS6D01G265100 chr6A 88.146 2961 181 85 407 3273 516254487 516251603 0.000000e+00 3367.0
5 TraesCS6D01G265100 chr6A 96.296 324 11 1 3261 3583 516223313 516222990 6.930000e-147 531.0
6 TraesCS6D01G265100 chr6A 86.053 380 27 13 1 370 516254856 516254493 5.710000e-103 385.0
7 TraesCS6D01G265100 chr1B 96.825 63 2 0 3580 3642 404298121 404298059 4.980000e-19 106.0
8 TraesCS6D01G265100 chr2B 95.238 63 3 0 3580 3642 98473423 98473485 2.310000e-17 100.0
9 TraesCS6D01G265100 chr5B 93.443 61 4 0 3576 3636 670234523 670234583 1.390000e-14 91.6
10 TraesCS6D01G265100 chr4A 94.737 57 3 0 3580 3636 742326895 742326951 5.010000e-14 89.8
11 TraesCS6D01G265100 chr3B 94.737 57 3 0 3580 3636 672596783 672596839 5.010000e-14 89.8
12 TraesCS6D01G265100 chr7B 94.643 56 3 0 3586 3641 740997504 740997559 1.800000e-13 87.9
13 TraesCS6D01G265100 chr2D 95.918 49 1 1 3575 3623 99111859 99111906 1.080000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G265100 chr6D 374118440 374122082 3642 True 6728.0 6728 100.0000 1 3643 1 chr6D.!!$R1 3642
1 TraesCS6D01G265100 chr6B 561283359 561287005 3646 True 1556.6 4205 85.2120 1 3583 3 chr6B.!!$R1 3582
2 TraesCS6D01G265100 chr6A 516251603 516254856 3253 True 1876.0 3367 87.0995 1 3273 2 chr6A.!!$R2 3272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 679 0.035343 GCCTTGACCACTTCCCCTAC 60.035 60.0 0.0 0.0 0.0 3.18 F
629 716 0.107116 ATCTACCGTCGCTGTCTCCT 60.107 55.0 0.0 0.0 0.0 3.69 F
1333 1492 0.238553 GCTTGCTGGTTTCGGAGTTC 59.761 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1566 0.459899 CGGATCAGGGAATCGACACA 59.540 55.0 0.0 0.0 0.00 3.72 R
1576 1739 0.830648 TAGAGCACCCCAATTCCTCG 59.169 55.0 0.0 0.0 0.00 4.63 R
2650 2862 0.323629 AAGGTATCACCACCACCACG 59.676 55.0 0.0 0.0 41.95 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.209504 ACTACCATCGTTCCATGGGTG 59.790 52.381 13.02 1.92 46.98 4.61
82 83 1.378382 CCATCGTTCCATGGGTGCA 60.378 57.895 13.02 0.00 39.95 4.57
83 84 0.964860 CCATCGTTCCATGGGTGCAA 60.965 55.000 13.02 0.00 39.95 4.08
85 86 1.477700 CATCGTTCCATGGGTGCAAAT 59.522 47.619 13.02 0.00 0.00 2.32
86 87 1.626686 TCGTTCCATGGGTGCAAATT 58.373 45.000 13.02 0.00 0.00 1.82
88 89 1.545582 CGTTCCATGGGTGCAAATTCT 59.454 47.619 13.02 0.00 0.00 2.40
89 90 2.415893 CGTTCCATGGGTGCAAATTCTC 60.416 50.000 13.02 0.00 0.00 2.87
90 91 2.562298 GTTCCATGGGTGCAAATTCTCA 59.438 45.455 13.02 0.00 0.00 3.27
91 92 2.886913 TCCATGGGTGCAAATTCTCAA 58.113 42.857 13.02 0.00 0.00 3.02
92 93 2.562298 TCCATGGGTGCAAATTCTCAAC 59.438 45.455 13.02 0.00 0.00 3.18
93 94 2.354003 CCATGGGTGCAAATTCTCAACC 60.354 50.000 2.85 6.95 40.42 3.77
94 95 2.079170 TGGGTGCAAATTCTCAACCA 57.921 45.000 11.38 11.38 46.92 3.67
97 98 2.288395 GGGTGCAAATTCTCAACCACAG 60.288 50.000 8.60 0.00 39.79 3.66
105 106 6.615088 CAAATTCTCAACCACAGATTGTAGG 58.385 40.000 0.00 0.00 0.00 3.18
115 116 2.375174 ACAGATTGTAGGTTGGGCTTGA 59.625 45.455 0.00 0.00 0.00 3.02
121 122 1.412453 TAGGTTGGGCTTGACCACGT 61.412 55.000 0.00 0.00 41.03 4.49
123 124 2.112297 TTGGGCTTGACCACGTCC 59.888 61.111 0.00 0.00 41.03 4.79
129 130 1.021968 GCTTGACCACGTCCTGTTTT 58.978 50.000 0.00 0.00 0.00 2.43
130 131 1.268539 GCTTGACCACGTCCTGTTTTG 60.269 52.381 0.00 0.00 0.00 2.44
131 132 1.333619 CTTGACCACGTCCTGTTTTGG 59.666 52.381 0.00 0.00 35.06 3.28
145 146 4.035441 CCTGTTTTGGCAAAAATGGACAAG 59.965 41.667 27.29 14.43 37.59 3.16
147 148 1.863267 TTGGCAAAAATGGACAAGCG 58.137 45.000 0.00 0.00 0.00 4.68
161 162 3.426292 GGACAAGCGTCTTTTATTGAGCC 60.426 47.826 0.00 0.00 42.21 4.70
208 212 0.392998 GGTGGATCGCATGTTGAGGT 60.393 55.000 0.00 0.00 0.00 3.85
216 220 2.094390 TCGCATGTTGAGGTAGTGGTAC 60.094 50.000 0.00 0.00 0.00 3.34
245 249 1.526917 GGTGAGCTGTGTGGCACTT 60.527 57.895 19.83 0.00 35.11 3.16
253 257 2.417933 GCTGTGTGGCACTTGAAGATAG 59.582 50.000 19.83 6.01 35.11 2.08
262 269 3.553511 GCACTTGAAGATAGACCACATCG 59.446 47.826 0.00 0.00 0.00 3.84
356 366 2.208431 CAGATTGAAGACGGCATCTCC 58.792 52.381 0.00 0.00 36.27 3.71
370 383 2.610479 GCATCTCCGTCAACAGAAGACA 60.610 50.000 0.00 0.00 35.77 3.41
372 385 3.093717 TCTCCGTCAACAGAAGACAAC 57.906 47.619 0.00 0.00 35.77 3.32
373 386 1.787155 CTCCGTCAACAGAAGACAACG 59.213 52.381 0.00 0.00 35.77 4.10
374 387 0.859232 CCGTCAACAGAAGACAACGG 59.141 55.000 0.00 0.00 42.97 4.44
375 388 1.567504 CGTCAACAGAAGACAACGGT 58.432 50.000 0.00 0.00 35.77 4.83
376 389 1.257936 CGTCAACAGAAGACAACGGTG 59.742 52.381 0.00 0.00 35.77 4.94
377 390 1.003866 GTCAACAGAAGACAACGGTGC 60.004 52.381 0.00 0.00 36.06 5.01
378 391 1.134521 TCAACAGAAGACAACGGTGCT 60.135 47.619 0.00 0.00 0.00 4.40
379 392 1.003545 CAACAGAAGACAACGGTGCTG 60.004 52.381 0.00 1.70 0.00 4.41
380 393 1.160329 ACAGAAGACAACGGTGCTGC 61.160 55.000 0.00 0.00 0.00 5.25
381 394 1.146041 AGAAGACAACGGTGCTGCA 59.854 52.632 0.00 0.00 0.00 4.41
382 395 0.250467 AGAAGACAACGGTGCTGCAT 60.250 50.000 5.27 0.00 0.00 3.96
383 396 0.166814 GAAGACAACGGTGCTGCATC 59.833 55.000 5.27 3.55 0.00 3.91
384 397 0.534877 AAGACAACGGTGCTGCATCA 60.535 50.000 14.06 0.00 0.00 3.07
385 398 0.321919 AGACAACGGTGCTGCATCAT 60.322 50.000 14.06 0.00 0.00 2.45
386 399 0.179181 GACAACGGTGCTGCATCATG 60.179 55.000 14.06 13.18 0.00 3.07
387 400 1.138036 CAACGGTGCTGCATCATGG 59.862 57.895 14.06 0.00 0.00 3.66
388 401 2.048023 AACGGTGCTGCATCATGGG 61.048 57.895 14.06 0.00 0.00 4.00
389 402 2.438975 CGGTGCTGCATCATGGGT 60.439 61.111 14.06 0.00 0.00 4.51
390 403 2.767445 CGGTGCTGCATCATGGGTG 61.767 63.158 14.06 0.00 0.00 4.61
391 404 2.493030 GTGCTGCATCATGGGTGC 59.507 61.111 5.27 14.59 42.81 5.01
392 405 2.050350 GTGCTGCATCATGGGTGCT 61.050 57.895 19.81 0.00 42.92 4.40
393 406 2.049767 TGCTGCATCATGGGTGCTG 61.050 57.895 19.81 19.49 42.92 4.41
394 407 2.805546 CTGCATCATGGGTGCTGC 59.194 61.111 19.81 10.40 45.31 5.25
396 409 3.533720 GCATCATGGGTGCTGCAT 58.466 55.556 5.27 0.00 44.66 3.96
397 410 1.362717 GCATCATGGGTGCTGCATC 59.637 57.895 5.27 4.51 44.66 3.91
398 411 1.388837 GCATCATGGGTGCTGCATCA 61.389 55.000 15.74 12.60 44.66 3.07
399 412 1.328279 CATCATGGGTGCTGCATCAT 58.672 50.000 15.74 14.27 0.00 2.45
400 413 1.000274 CATCATGGGTGCTGCATCATG 60.000 52.381 27.69 27.69 38.54 3.07
401 414 0.753848 TCATGGGTGCTGCATCATGG 60.754 55.000 30.19 19.85 37.97 3.66
402 415 1.456892 ATGGGTGCTGCATCATGGG 60.457 57.895 15.74 0.00 0.00 4.00
405 418 1.225426 GGTGCTGCATCATGGGAGA 59.775 57.895 8.27 0.00 0.00 3.71
420 433 1.133294 GGGAGAAGGTTTGGGTTTGGA 60.133 52.381 0.00 0.00 0.00 3.53
424 437 2.246327 AGAAGGTTTGGGTTTGGAGGAA 59.754 45.455 0.00 0.00 0.00 3.36
425 438 2.381752 AGGTTTGGGTTTGGAGGAAG 57.618 50.000 0.00 0.00 0.00 3.46
426 439 1.573857 AGGTTTGGGTTTGGAGGAAGT 59.426 47.619 0.00 0.00 0.00 3.01
429 442 2.358322 TTGGGTTTGGAGGAAGTGAC 57.642 50.000 0.00 0.00 0.00 3.67
461 483 5.801947 TCAACGATTTTTACTCGCCTACTAC 59.198 40.000 0.00 0.00 39.71 2.73
462 484 5.573337 ACGATTTTTACTCGCCTACTACT 57.427 39.130 0.00 0.00 39.71 2.57
464 486 6.723282 ACGATTTTTACTCGCCTACTACTAG 58.277 40.000 0.00 0.00 39.71 2.57
470 492 7.452880 TTTACTCGCCTACTACTAGAACAAA 57.547 36.000 0.00 0.00 0.00 2.83
472 494 6.336842 ACTCGCCTACTACTAGAACAAAAA 57.663 37.500 0.00 0.00 0.00 1.94
473 495 6.155136 ACTCGCCTACTACTAGAACAAAAAC 58.845 40.000 0.00 0.00 0.00 2.43
476 498 6.985645 TCGCCTACTACTAGAACAAAAACAAA 59.014 34.615 0.00 0.00 0.00 2.83
530 602 1.294659 GACGGCAGGAGAAACAGCTG 61.295 60.000 13.48 13.48 39.22 4.24
589 669 2.741985 CATGCGTCGCCTTGACCA 60.742 61.111 15.88 0.00 45.23 4.02
599 679 0.035343 GCCTTGACCACTTCCCCTAC 60.035 60.000 0.00 0.00 0.00 3.18
600 680 0.618981 CCTTGACCACTTCCCCTACC 59.381 60.000 0.00 0.00 0.00 3.18
601 681 1.657804 CTTGACCACTTCCCCTACCT 58.342 55.000 0.00 0.00 0.00 3.08
602 682 2.561297 CCTTGACCACTTCCCCTACCTA 60.561 54.545 0.00 0.00 0.00 3.08
603 683 3.178865 CTTGACCACTTCCCCTACCTAA 58.821 50.000 0.00 0.00 0.00 2.69
604 684 3.502051 TGACCACTTCCCCTACCTAAT 57.498 47.619 0.00 0.00 0.00 1.73
605 685 4.630382 TGACCACTTCCCCTACCTAATA 57.370 45.455 0.00 0.00 0.00 0.98
629 716 0.107116 ATCTACCGTCGCTGTCTCCT 60.107 55.000 0.00 0.00 0.00 3.69
644 732 3.952323 TGTCTCCTGTCTAATAACCTCGG 59.048 47.826 0.00 0.00 0.00 4.63
764 861 4.585162 TCACGTCCTTCTCTTCTTCTTCTT 59.415 41.667 0.00 0.00 0.00 2.52
765 862 4.920927 CACGTCCTTCTCTTCTTCTTCTTC 59.079 45.833 0.00 0.00 0.00 2.87
766 863 4.830600 ACGTCCTTCTCTTCTTCTTCTTCT 59.169 41.667 0.00 0.00 0.00 2.85
767 864 5.303333 ACGTCCTTCTCTTCTTCTTCTTCTT 59.697 40.000 0.00 0.00 0.00 2.52
768 865 5.861787 CGTCCTTCTCTTCTTCTTCTTCTTC 59.138 44.000 0.00 0.00 0.00 2.87
769 866 6.294508 CGTCCTTCTCTTCTTCTTCTTCTTCT 60.295 42.308 0.00 0.00 0.00 2.85
770 867 7.441836 GTCCTTCTCTTCTTCTTCTTCTTCTT 58.558 38.462 0.00 0.00 0.00 2.52
779 876 3.403038 TCTTCTTCTTCTTCCCTTTGCG 58.597 45.455 0.00 0.00 0.00 4.85
796 893 2.343758 GTCCTGTTCCAGCTCGCA 59.656 61.111 0.00 0.00 0.00 5.10
798 895 2.210013 TCCTGTTCCAGCTCGCAGT 61.210 57.895 0.00 0.00 0.00 4.40
936 1072 4.783841 CGTCCGTCGTCGTCGTCC 62.784 72.222 10.76 0.46 38.33 4.79
955 1091 2.122768 CCTCCTAGATCCAACAGCCTT 58.877 52.381 0.00 0.00 0.00 4.35
956 1092 2.507471 CCTCCTAGATCCAACAGCCTTT 59.493 50.000 0.00 0.00 0.00 3.11
970 1106 1.078848 CCTTTGTCCCTGCTCGGAG 60.079 63.158 0.00 0.00 30.62 4.63
971 1107 1.743252 CTTTGTCCCTGCTCGGAGC 60.743 63.158 22.78 22.78 42.82 4.70
1119 1264 4.405671 GCTCCTGCTCTGCTGCCA 62.406 66.667 0.00 0.00 36.03 4.92
1121 1266 3.972971 CTCCTGCTCTGCTGCCACC 62.973 68.421 0.00 0.00 0.00 4.61
1181 1334 0.315869 GGTTCGTCGTGCTGTGTTTG 60.316 55.000 0.00 0.00 0.00 2.93
1268 1421 2.614734 CCAAGAGGGGTACGTTTCCTTC 60.615 54.545 0.00 1.73 0.00 3.46
1287 1442 1.075600 CTCCTCTCCACCTCCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1333 1492 0.238553 GCTTGCTGGTTTCGGAGTTC 59.761 55.000 0.00 0.00 0.00 3.01
1354 1513 7.108847 AGTTCGATCTGGAATTTGAGAAGATT 58.891 34.615 0.00 0.00 0.00 2.40
1355 1514 6.915544 TCGATCTGGAATTTGAGAAGATTG 57.084 37.500 0.00 0.00 32.29 2.67
1356 1515 5.819379 TCGATCTGGAATTTGAGAAGATTGG 59.181 40.000 0.00 0.00 32.04 3.16
1357 1516 5.008415 CGATCTGGAATTTGAGAAGATTGGG 59.992 44.000 0.00 0.00 0.00 4.12
1358 1517 4.019174 TCTGGAATTTGAGAAGATTGGGC 58.981 43.478 0.00 0.00 0.00 5.36
1379 1538 2.539081 GGCTGGGACCTGGGAGTTT 61.539 63.158 0.00 0.00 0.00 2.66
1394 1553 0.606401 AGTTTGGTCACATGCTCCGG 60.606 55.000 0.00 0.00 0.00 5.14
1407 1566 1.515954 CTCCGGTTAGATGCGTGGT 59.484 57.895 0.00 0.00 0.00 4.16
1473 1632 1.676678 ATGTCGTCAGATCGGGGTGG 61.677 60.000 0.00 0.00 0.00 4.61
1516 1679 5.661056 TGAACTGTAGACGATGAGGAATT 57.339 39.130 0.00 0.00 0.00 2.17
1517 1680 6.769134 TGAACTGTAGACGATGAGGAATTA 57.231 37.500 0.00 0.00 0.00 1.40
1518 1681 7.348080 TGAACTGTAGACGATGAGGAATTAT 57.652 36.000 0.00 0.00 0.00 1.28
1554 1717 2.091333 ACTGAGGGAACATTTTGGTGGT 60.091 45.455 0.00 0.00 0.00 4.16
1566 1729 4.993029 TTTTGGTGGTTGAGTTGTTAGG 57.007 40.909 0.00 0.00 0.00 2.69
1576 1739 3.592059 TGAGTTGTTAGGTGATTACGGC 58.408 45.455 0.00 0.00 0.00 5.68
1645 1808 4.521146 AGCTTTCCGATGATGTTCTTCAT 58.479 39.130 1.71 1.71 39.04 2.57
1680 1847 2.779755 TGACATGGTTTGCCGACTAT 57.220 45.000 0.00 0.00 37.67 2.12
1803 1985 4.022068 TGATGTGAAATTTCTGAACCTGCC 60.022 41.667 18.64 0.77 0.00 4.85
1860 2042 2.941453 TAGAGAGCGTGCTAAACTGG 57.059 50.000 0.00 0.00 0.00 4.00
1883 2065 4.436852 GCATACATACGATAAAATGCCGGG 60.437 45.833 2.18 0.00 34.95 5.73
1889 2071 2.294074 CGATAAAATGCCGGGAAGGAA 58.706 47.619 0.00 0.00 45.00 3.36
1913 2095 3.057969 TGTTGAGCCTGTGATGGTAAG 57.942 47.619 0.00 0.00 0.00 2.34
1927 2114 1.764134 TGGTAAGACCTTGTTGTCCGT 59.236 47.619 0.00 0.00 39.58 4.69
2118 2320 7.470009 GCCCCAAAGTACATATTTTGGTATCTG 60.470 40.741 19.04 7.98 45.91 2.90
2555 2767 1.080025 CGTCCCCCAGAAAGACGTC 60.080 63.158 7.70 7.70 46.23 4.34
2639 2851 5.012664 TGGACTAGTAGCATTGTTCTTCCAA 59.987 40.000 0.00 0.00 0.00 3.53
2643 2855 8.079211 ACTAGTAGCATTGTTCTTCCAATAGA 57.921 34.615 0.00 0.00 33.37 1.98
2644 2856 7.982354 ACTAGTAGCATTGTTCTTCCAATAGAC 59.018 37.037 0.00 0.00 33.37 2.59
2649 2861 2.695359 TGTTCTTCCAATAGACGGTGC 58.305 47.619 0.00 0.00 0.00 5.01
2650 2862 2.007608 GTTCTTCCAATAGACGGTGCC 58.992 52.381 0.00 0.00 0.00 5.01
2835 3047 6.072508 GCCAACTTAGAATTCACTGATTGTCA 60.073 38.462 8.44 0.00 0.00 3.58
2887 3099 6.495706 TGTCTCACTCGTGTATAATGATGAC 58.504 40.000 0.00 0.00 0.00 3.06
2896 3108 9.478019 CTCGTGTATAATGATGACAACTTTTTC 57.522 33.333 0.00 0.00 0.00 2.29
2969 3182 9.712305 CCTAGTTCATTCTAGTCTCAAAGAAAA 57.288 33.333 0.00 0.00 35.47 2.29
3143 3365 6.105397 TCTGTGGGAAGTAGTTAAAATCGT 57.895 37.500 0.00 0.00 0.00 3.73
3183 3406 6.956202 AGAATAAGAATCCTTGCATGGAAG 57.044 37.500 23.77 19.26 39.85 3.46
3233 3466 3.206150 CTTCAATCCATGTCCTTACCCG 58.794 50.000 0.00 0.00 0.00 5.28
3239 3472 3.376636 TCCATGTCCTTACCCGATTGTA 58.623 45.455 0.00 0.00 0.00 2.41
3374 3607 6.871844 CAGAGTCTGGAGATTTGATTGTCTA 58.128 40.000 12.67 0.00 0.00 2.59
3417 3650 7.388460 TCGTAGTTGGGTTTTGAAACTAAAA 57.612 32.000 6.57 0.00 38.89 1.52
3471 3704 9.801873 CAAACTTATCTCCTTTGTCTTTTGAAA 57.198 29.630 0.00 0.00 0.00 2.69
3583 3816 2.762535 AACTAACTCCATGGTGGACG 57.237 50.000 17.76 7.65 42.67 4.79
3584 3817 0.249398 ACTAACTCCATGGTGGACGC 59.751 55.000 17.76 0.00 42.67 5.19
3585 3818 0.249120 CTAACTCCATGGTGGACGCA 59.751 55.000 17.76 0.00 42.67 5.24
3586 3819 0.249120 TAACTCCATGGTGGACGCAG 59.751 55.000 17.76 5.83 42.67 5.18
3587 3820 2.821366 CTCCATGGTGGACGCAGC 60.821 66.667 12.58 0.00 42.67 5.25
3588 3821 4.758251 TCCATGGTGGACGCAGCG 62.758 66.667 14.82 14.82 42.67 5.18
3589 3822 4.758251 CCATGGTGGACGCAGCGA 62.758 66.667 24.65 0.00 40.96 4.93
3590 3823 2.512286 CATGGTGGACGCAGCGAT 60.512 61.111 24.65 5.58 0.00 4.58
3591 3824 2.108514 CATGGTGGACGCAGCGATT 61.109 57.895 24.65 0.00 0.00 3.34
3592 3825 1.815421 ATGGTGGACGCAGCGATTC 60.815 57.895 24.65 9.61 0.00 2.52
3593 3826 3.554692 GGTGGACGCAGCGATTCG 61.555 66.667 24.65 0.62 0.00 3.34
3594 3827 3.554692 GTGGACGCAGCGATTCGG 61.555 66.667 24.65 0.00 0.00 4.30
3595 3828 4.063967 TGGACGCAGCGATTCGGT 62.064 61.111 24.65 4.68 38.40 4.69
3618 3851 3.774528 AGCGCATCTGCTCCCGAA 61.775 61.111 11.47 0.00 42.95 4.30
3619 3852 2.819595 GCGCATCTGCTCCCGAAA 60.820 61.111 0.30 0.00 39.32 3.46
3620 3853 2.182842 GCGCATCTGCTCCCGAAAT 61.183 57.895 0.30 0.00 39.32 2.17
3621 3854 1.937391 CGCATCTGCTCCCGAAATC 59.063 57.895 0.09 0.00 39.32 2.17
3622 3855 1.825285 CGCATCTGCTCCCGAAATCG 61.825 60.000 0.09 0.00 39.32 3.34
3623 3856 1.937391 CATCTGCTCCCGAAATCGC 59.063 57.895 0.00 0.00 38.18 4.58
3624 3857 0.531532 CATCTGCTCCCGAAATCGCT 60.532 55.000 0.00 0.00 38.18 4.93
3625 3858 0.531532 ATCTGCTCCCGAAATCGCTG 60.532 55.000 0.00 0.00 38.18 5.18
3626 3859 2.125147 TGCTCCCGAAATCGCTGG 60.125 61.111 0.00 0.00 38.18 4.85
3627 3860 3.577313 GCTCCCGAAATCGCTGGC 61.577 66.667 0.00 0.00 38.18 4.85
3628 3861 3.264897 CTCCCGAAATCGCTGGCG 61.265 66.667 8.80 8.80 38.18 5.69
3629 3862 4.077184 TCCCGAAATCGCTGGCGT 62.077 61.111 14.55 0.00 40.74 5.68
3630 3863 3.124921 CCCGAAATCGCTGGCGTT 61.125 61.111 14.55 3.78 40.74 4.84
3631 3864 2.098298 CCGAAATCGCTGGCGTTG 59.902 61.111 14.55 0.13 40.74 4.10
3632 3865 2.098298 CGAAATCGCTGGCGTTGG 59.902 61.111 14.55 0.97 40.74 3.77
3633 3866 2.677003 CGAAATCGCTGGCGTTGGT 61.677 57.895 14.55 0.00 40.74 3.67
3634 3867 1.579429 GAAATCGCTGGCGTTGGTT 59.421 52.632 14.55 5.16 40.74 3.67
3635 3868 0.454452 GAAATCGCTGGCGTTGGTTC 60.454 55.000 14.55 9.89 40.74 3.62
3636 3869 1.169661 AAATCGCTGGCGTTGGTTCA 61.170 50.000 14.55 0.00 40.74 3.18
3637 3870 1.852067 AATCGCTGGCGTTGGTTCAC 61.852 55.000 14.55 0.00 40.74 3.18
3638 3871 4.368808 CGCTGGCGTTGGTTCACG 62.369 66.667 6.83 0.00 43.36 4.35
3639 3872 3.276846 GCTGGCGTTGGTTCACGT 61.277 61.111 0.00 0.00 42.43 4.49
3640 3873 2.935955 CTGGCGTTGGTTCACGTC 59.064 61.111 0.00 0.00 45.23 4.34
3641 3874 1.594293 CTGGCGTTGGTTCACGTCT 60.594 57.895 0.00 0.00 45.24 4.18
3642 3875 1.831389 CTGGCGTTGGTTCACGTCTG 61.831 60.000 0.00 0.00 45.24 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.383761 GCTGTACAAAATGCACTTTGCT 58.616 40.909 19.81 10.08 45.31 3.91
18 19 2.476241 GGCTGTACAAAATGCACTTTGC 59.524 45.455 19.81 5.98 45.29 3.68
58 59 2.698797 ACCCATGGAACGATGGTAGTAG 59.301 50.000 15.22 0.00 41.38 2.57
59 60 2.432874 CACCCATGGAACGATGGTAGTA 59.567 50.000 15.22 0.00 41.38 1.82
60 61 1.209504 CACCCATGGAACGATGGTAGT 59.790 52.381 15.22 0.00 41.38 2.73
80 81 4.874970 ACAATCTGTGGTTGAGAATTTGC 58.125 39.130 0.00 0.00 0.00 3.68
82 83 6.306987 ACCTACAATCTGTGGTTGAGAATTT 58.693 36.000 0.00 0.00 31.09 1.82
83 84 5.880901 ACCTACAATCTGTGGTTGAGAATT 58.119 37.500 0.00 0.00 31.09 2.17
85 86 4.974645 ACCTACAATCTGTGGTTGAGAA 57.025 40.909 0.00 0.00 31.09 2.87
86 87 4.974645 AACCTACAATCTGTGGTTGAGA 57.025 40.909 10.74 0.00 38.97 3.27
89 90 2.819608 CCCAACCTACAATCTGTGGTTG 59.180 50.000 21.56 21.56 46.66 3.77
90 91 2.817839 GCCCAACCTACAATCTGTGGTT 60.818 50.000 7.43 7.43 40.10 3.67
91 92 1.271926 GCCCAACCTACAATCTGTGGT 60.272 52.381 0.00 0.00 34.71 4.16
92 93 1.004745 AGCCCAACCTACAATCTGTGG 59.995 52.381 0.00 0.00 0.00 4.17
93 94 2.489329 CAAGCCCAACCTACAATCTGTG 59.511 50.000 0.00 0.00 0.00 3.66
94 95 2.375174 TCAAGCCCAACCTACAATCTGT 59.625 45.455 0.00 0.00 0.00 3.41
97 98 2.092323 GGTCAAGCCCAACCTACAATC 58.908 52.381 0.00 0.00 32.54 2.67
105 106 2.258726 GGACGTGGTCAAGCCCAAC 61.259 63.158 0.00 0.00 35.92 3.77
115 116 0.681564 TTGCCAAAACAGGACGTGGT 60.682 50.000 0.00 0.00 33.43 4.16
121 122 3.198635 TGTCCATTTTTGCCAAAACAGGA 59.801 39.130 15.03 15.03 37.20 3.86
123 124 4.496175 GCTTGTCCATTTTTGCCAAAACAG 60.496 41.667 1.25 0.00 34.63 3.16
129 130 0.749649 ACGCTTGTCCATTTTTGCCA 59.250 45.000 0.00 0.00 0.00 4.92
130 131 1.000274 AGACGCTTGTCCATTTTTGCC 60.000 47.619 0.00 0.00 43.97 4.52
131 132 2.422276 AGACGCTTGTCCATTTTTGC 57.578 45.000 0.00 0.00 43.97 3.68
145 146 0.377203 CGGGGCTCAATAAAAGACGC 59.623 55.000 0.00 0.00 0.00 5.19
147 148 1.664151 CGACGGGGCTCAATAAAAGAC 59.336 52.381 0.00 0.00 0.00 3.01
161 162 1.511318 TTGCACCAATCAACGACGGG 61.511 55.000 0.00 0.00 0.00 5.28
208 212 1.888018 GCACGGCAGAGTACCACTA 59.112 57.895 0.00 0.00 0.00 2.74
245 249 3.291584 AGCTCGATGTGGTCTATCTTCA 58.708 45.455 0.00 0.00 0.00 3.02
253 257 1.565305 CAGCTAAGCTCGATGTGGTC 58.435 55.000 0.00 0.00 36.40 4.02
262 269 2.959071 CGCTCGCCAGCTAAGCTC 60.959 66.667 0.79 0.00 44.40 4.09
285 292 3.039588 GCCCGCAAGAACGAACGA 61.040 61.111 0.14 0.00 43.02 3.85
286 293 2.887889 TTGCCCGCAAGAACGAACG 61.888 57.895 0.00 0.00 43.02 3.95
287 294 3.027292 TTGCCCGCAAGAACGAAC 58.973 55.556 0.00 0.00 43.02 3.95
311 318 2.416431 GCTGGCTGTTTTCCTGCTTATG 60.416 50.000 4.05 0.00 42.85 1.90
312 319 1.821136 GCTGGCTGTTTTCCTGCTTAT 59.179 47.619 4.05 0.00 42.85 1.73
313 320 1.247567 GCTGGCTGTTTTCCTGCTTA 58.752 50.000 4.05 0.00 42.85 3.09
314 321 2.044452 GCTGGCTGTTTTCCTGCTT 58.956 52.632 4.05 0.00 42.85 3.91
316 323 1.288127 CAGCTGGCTGTTTTCCTGC 59.712 57.895 13.76 3.18 45.39 4.85
317 324 1.288127 GCAGCTGGCTGTTTTCCTG 59.712 57.895 21.34 0.00 45.24 3.86
356 366 1.257936 CACCGTTGTCTTCTGTTGACG 59.742 52.381 0.00 0.00 37.26 4.35
357 367 1.003866 GCACCGTTGTCTTCTGTTGAC 60.004 52.381 0.00 0.00 35.21 3.18
358 368 1.134521 AGCACCGTTGTCTTCTGTTGA 60.135 47.619 0.00 0.00 0.00 3.18
370 383 2.048023 CCCATGATGCAGCACCGTT 61.048 57.895 6.89 0.00 0.00 4.44
372 385 2.438975 ACCCATGATGCAGCACCG 60.439 61.111 6.89 0.58 0.00 4.94
373 386 3.072486 GCACCCATGATGCAGCACC 62.072 63.158 6.89 0.00 42.88 5.01
374 387 2.050350 AGCACCCATGATGCAGCAC 61.050 57.895 6.89 0.00 45.92 4.40
375 388 2.049767 CAGCACCCATGATGCAGCA 61.050 57.895 20.00 7.31 45.92 4.41
376 389 2.805546 CAGCACCCATGATGCAGC 59.194 61.111 20.00 0.00 45.92 5.25
380 393 1.000274 CATGATGCAGCACCCATGATG 60.000 52.381 24.91 6.33 45.39 3.07
381 394 1.328279 CATGATGCAGCACCCATGAT 58.672 50.000 24.91 0.00 38.83 2.45
382 395 0.753848 CCATGATGCAGCACCCATGA 60.754 55.000 28.34 0.00 38.83 3.07
383 396 1.739667 CCATGATGCAGCACCCATG 59.260 57.895 23.31 23.31 36.92 3.66
384 397 1.456892 CCCATGATGCAGCACCCAT 60.457 57.895 6.89 1.21 0.00 4.00
385 398 2.043752 CCCATGATGCAGCACCCA 60.044 61.111 6.89 0.00 0.00 4.51
386 399 1.826921 CTCCCATGATGCAGCACCC 60.827 63.158 6.89 0.00 0.00 4.61
387 400 0.394762 TTCTCCCATGATGCAGCACC 60.395 55.000 6.89 0.00 0.00 5.01
388 401 1.022735 CTTCTCCCATGATGCAGCAC 58.977 55.000 6.89 0.00 0.00 4.40
389 402 0.106868 CCTTCTCCCATGATGCAGCA 60.107 55.000 7.31 7.31 0.00 4.41
390 403 0.106819 ACCTTCTCCCATGATGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
391 404 2.426024 CAAACCTTCTCCCATGATGCAG 59.574 50.000 0.00 0.00 0.00 4.41
392 405 2.449464 CAAACCTTCTCCCATGATGCA 58.551 47.619 0.00 0.00 0.00 3.96
393 406 1.753073 CCAAACCTTCTCCCATGATGC 59.247 52.381 0.00 0.00 0.00 3.91
394 407 2.291800 ACCCAAACCTTCTCCCATGATG 60.292 50.000 0.00 0.00 0.00 3.07
395 408 2.003072 ACCCAAACCTTCTCCCATGAT 58.997 47.619 0.00 0.00 0.00 2.45
396 409 1.455822 ACCCAAACCTTCTCCCATGA 58.544 50.000 0.00 0.00 0.00 3.07
397 410 2.299867 CAAACCCAAACCTTCTCCCATG 59.700 50.000 0.00 0.00 0.00 3.66
398 411 2.608623 CAAACCCAAACCTTCTCCCAT 58.391 47.619 0.00 0.00 0.00 4.00
399 412 1.412361 CCAAACCCAAACCTTCTCCCA 60.412 52.381 0.00 0.00 0.00 4.37
400 413 1.133294 TCCAAACCCAAACCTTCTCCC 60.133 52.381 0.00 0.00 0.00 4.30
401 414 2.239400 CTCCAAACCCAAACCTTCTCC 58.761 52.381 0.00 0.00 0.00 3.71
402 415 2.158519 TCCTCCAAACCCAAACCTTCTC 60.159 50.000 0.00 0.00 0.00 2.87
405 418 2.023404 ACTTCCTCCAAACCCAAACCTT 60.023 45.455 0.00 0.00 0.00 3.50
420 433 3.203716 GTTGAACCTTTCGTCACTTCCT 58.796 45.455 0.00 0.00 0.00 3.36
424 437 2.589798 TCGTTGAACCTTTCGTCACT 57.410 45.000 0.00 0.00 0.00 3.41
425 438 3.872560 AATCGTTGAACCTTTCGTCAC 57.127 42.857 0.00 0.00 0.00 3.67
426 439 4.886247 AAAATCGTTGAACCTTTCGTCA 57.114 36.364 0.00 0.00 0.00 4.35
429 442 5.558888 CGAGTAAAAATCGTTGAACCTTTCG 59.441 40.000 0.00 0.00 35.48 3.46
461 483 5.338559 CACGCCGTATTTGTTTTTGTTCTAG 59.661 40.000 0.00 0.00 0.00 2.43
462 484 5.206299 CACGCCGTATTTGTTTTTGTTCTA 58.794 37.500 0.00 0.00 0.00 2.10
464 486 3.361243 GCACGCCGTATTTGTTTTTGTTC 60.361 43.478 0.00 0.00 0.00 3.18
470 492 4.830708 CGCACGCCGTATTTGTTT 57.169 50.000 0.00 0.00 0.00 2.83
521 593 2.587522 AGTTTTCCCCTCAGCTGTTTC 58.412 47.619 14.67 0.00 0.00 2.78
571 651 4.166011 GGTCAAGGCGACGCATGC 62.166 66.667 23.09 7.91 46.42 4.06
589 669 9.994017 GTAGATAGATTATTAGGTAGGGGAAGT 57.006 37.037 0.00 0.00 0.00 3.01
599 679 6.093771 ACAGCGACGGTAGATAGATTATTAGG 59.906 42.308 0.00 0.00 0.00 2.69
600 680 7.064847 AGACAGCGACGGTAGATAGATTATTAG 59.935 40.741 0.00 0.00 0.00 1.73
601 681 6.877855 AGACAGCGACGGTAGATAGATTATTA 59.122 38.462 0.00 0.00 0.00 0.98
602 682 5.706369 AGACAGCGACGGTAGATAGATTATT 59.294 40.000 0.00 0.00 0.00 1.40
603 683 5.247084 AGACAGCGACGGTAGATAGATTAT 58.753 41.667 0.00 0.00 0.00 1.28
604 684 4.639334 AGACAGCGACGGTAGATAGATTA 58.361 43.478 0.00 0.00 0.00 1.75
605 685 3.478509 AGACAGCGACGGTAGATAGATT 58.521 45.455 0.00 0.00 0.00 2.40
629 716 2.159198 GGCGAACCGAGGTTATTAGACA 60.159 50.000 7.59 0.00 38.60 3.41
659 747 1.152963 CGGATGGATTGTGGGACCC 60.153 63.158 2.45 2.45 0.00 4.46
709 805 0.926628 CGCGTTTTGTTTCGGTGTCC 60.927 55.000 0.00 0.00 0.00 4.02
764 861 1.056660 AGGACGCAAAGGGAAGAAGA 58.943 50.000 0.00 0.00 0.00 2.87
765 862 1.160137 CAGGACGCAAAGGGAAGAAG 58.840 55.000 0.00 0.00 0.00 2.85
766 863 0.472471 ACAGGACGCAAAGGGAAGAA 59.528 50.000 0.00 0.00 0.00 2.52
767 864 0.472471 AACAGGACGCAAAGGGAAGA 59.528 50.000 0.00 0.00 0.00 2.87
768 865 0.875059 GAACAGGACGCAAAGGGAAG 59.125 55.000 0.00 0.00 0.00 3.46
769 866 0.536460 GGAACAGGACGCAAAGGGAA 60.536 55.000 0.00 0.00 0.00 3.97
770 867 1.072505 GGAACAGGACGCAAAGGGA 59.927 57.895 0.00 0.00 0.00 4.20
796 893 1.079543 GACGGATGCTGCTGTGACT 60.080 57.895 0.00 0.00 0.00 3.41
798 895 2.125952 CGACGGATGCTGCTGTGA 60.126 61.111 0.00 0.00 0.00 3.58
870 980 2.888863 GACTCTCCTCGCTGGTGG 59.111 66.667 0.00 0.00 37.07 4.61
936 1072 3.054802 ACAAAGGCTGTTGGATCTAGGAG 60.055 47.826 12.03 0.00 32.99 3.69
955 1091 3.706373 GGCTCCGAGCAGGGACAA 61.706 66.667 21.76 0.00 44.75 3.18
1119 1264 2.202518 CGTAACGCGGACGATGGT 60.203 61.111 25.73 0.00 42.98 3.55
1224 1377 1.987855 CAGCAAGGTCCTCCCCGTA 60.988 63.158 0.00 0.00 0.00 4.02
1268 1421 1.075600 GAGGGAGGTGGAGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
1287 1442 2.757508 TGGAGCTCAGCGAGGAGG 60.758 66.667 17.19 0.00 35.41 4.30
1313 1468 1.507141 AACTCCGAAACCAGCAAGCG 61.507 55.000 0.00 0.00 0.00 4.68
1333 1492 5.008415 CCCAATCTTCTCAAATTCCAGATCG 59.992 44.000 0.00 0.00 0.00 3.69
1379 1538 0.249120 CTAACCGGAGCATGTGACCA 59.751 55.000 9.46 0.00 0.00 4.02
1394 1553 0.713883 CGACACACCACGCATCTAAC 59.286 55.000 0.00 0.00 0.00 2.34
1407 1566 0.459899 CGGATCAGGGAATCGACACA 59.540 55.000 0.00 0.00 0.00 3.72
1454 1613 1.676678 CCACCCCGATCTGACGACAT 61.677 60.000 0.00 0.00 35.09 3.06
1473 1632 1.663074 GACCGCTGATCCTCGATGC 60.663 63.158 5.42 0.00 0.00 3.91
1517 1680 9.654663 GTTCCCTCAGTCGCTATTTATTATTAT 57.345 33.333 0.00 0.00 0.00 1.28
1518 1681 8.644216 TGTTCCCTCAGTCGCTATTTATTATTA 58.356 33.333 0.00 0.00 0.00 0.98
1523 1686 5.552870 ATGTTCCCTCAGTCGCTATTTAT 57.447 39.130 0.00 0.00 0.00 1.40
1534 1697 2.597455 ACCACCAAAATGTTCCCTCAG 58.403 47.619 0.00 0.00 0.00 3.35
1554 1717 3.998341 GCCGTAATCACCTAACAACTCAA 59.002 43.478 0.00 0.00 0.00 3.02
1566 1729 1.597663 CCAATTCCTCGCCGTAATCAC 59.402 52.381 0.00 0.00 0.00 3.06
1576 1739 0.830648 TAGAGCACCCCAATTCCTCG 59.169 55.000 0.00 0.00 0.00 4.63
1645 1808 7.461182 ACCATGTCAATTCCTTTTTAATCGA 57.539 32.000 0.00 0.00 0.00 3.59
1680 1847 1.333347 CGAACAACATGAAACGCGGAA 60.333 47.619 12.47 0.00 0.00 4.30
1803 1985 2.979676 TGCCAAGAAGCAGCACCG 60.980 61.111 0.00 0.00 38.00 4.94
1831 2013 5.269505 AGCACGCTCTCTATTTAGTGATT 57.730 39.130 0.00 0.00 0.00 2.57
1860 2042 4.436852 CCCGGCATTTTATCGTATGTATGC 60.437 45.833 0.00 0.00 38.06 3.14
1883 2065 4.037923 TCACAGGCTCAACAAATTTCCTTC 59.962 41.667 0.00 0.00 0.00 3.46
1889 2071 3.233507 ACCATCACAGGCTCAACAAATT 58.766 40.909 0.00 0.00 0.00 1.82
1913 2095 1.534163 GCCTTAACGGACAACAAGGTC 59.466 52.381 0.00 0.00 39.82 3.85
1927 2114 2.101783 CCTGGACATTGCATGCCTTAA 58.898 47.619 16.68 2.88 0.00 1.85
2555 2767 3.243267 CCCTTTGGACACCACTTTTAACG 60.243 47.826 0.00 0.00 30.78 3.18
2649 2861 1.078708 GGTATCACCACCACCACGG 60.079 63.158 0.00 0.00 38.42 4.94
2650 2862 0.323629 AAGGTATCACCACCACCACG 59.676 55.000 0.00 0.00 41.95 4.94
2835 3047 5.265191 ACAGTGTGAGAGGTATGATACAGT 58.735 41.667 4.83 0.00 0.00 3.55
2887 3099 6.162777 TCCAGTGACCAAAAAGAAAAAGTTG 58.837 36.000 0.00 0.00 0.00 3.16
2896 3108 5.582689 AACTCTTTCCAGTGACCAAAAAG 57.417 39.130 0.00 0.00 0.00 2.27
3036 3249 7.201732 CCAGTGACTACAAAATTTGTCTGAAGT 60.202 37.037 15.22 12.61 44.12 3.01
3201 3434 6.587608 GGACATGGATTGAAGTGAAATGTTTC 59.412 38.462 0.00 0.00 37.69 2.78
3233 3466 4.519540 ACAGTGGTTTTGGCATACAATC 57.480 40.909 0.00 0.00 39.21 2.67
3239 3472 3.894427 TGTGATAACAGTGGTTTTGGCAT 59.106 39.130 0.00 0.00 38.45 4.40
3374 3607 8.561738 ACTACGAATCAAGTATGGTTTTGAAT 57.438 30.769 0.00 0.00 36.93 2.57
3417 3650 5.447778 AATCTCCAAACTCTGGTCATGAT 57.552 39.130 0.00 0.00 46.51 2.45
3471 3704 6.904654 TCCATAGGGGTACTGTACATTTAAGT 59.095 38.462 18.79 0.00 38.11 2.24
3580 3813 4.210304 GCACCGAATCGCTGCGTC 62.210 66.667 22.48 12.13 29.09 5.19
3583 3816 3.918220 CGAGCACCGAATCGCTGC 61.918 66.667 14.38 14.38 38.99 5.25
3584 3817 2.202610 TCGAGCACCGAATCGCTG 60.203 61.111 0.00 0.00 45.43 5.18
3603 3836 1.825285 CGATTTCGGGAGCAGATGCG 61.825 60.000 0.00 0.00 40.05 4.73
3604 3837 1.937391 CGATTTCGGGAGCAGATGC 59.063 57.895 0.00 0.00 37.19 3.91
3605 3838 0.531532 AGCGATTTCGGGAGCAGATG 60.532 55.000 1.75 0.00 40.23 2.90
3606 3839 0.531532 CAGCGATTTCGGGAGCAGAT 60.532 55.000 1.75 0.00 40.23 2.90
3607 3840 1.153568 CAGCGATTTCGGGAGCAGA 60.154 57.895 1.75 0.00 40.23 4.26
3608 3841 2.176273 CCAGCGATTTCGGGAGCAG 61.176 63.158 1.75 0.00 40.23 4.24
3609 3842 2.125147 CCAGCGATTTCGGGAGCA 60.125 61.111 1.75 0.00 40.23 4.26
3610 3843 3.577313 GCCAGCGATTTCGGGAGC 61.577 66.667 1.75 0.00 40.23 4.70
3611 3844 3.264897 CGCCAGCGATTTCGGGAG 61.265 66.667 6.06 0.00 42.83 4.30
3612 3845 3.599285 AACGCCAGCGATTTCGGGA 62.599 57.895 20.32 0.00 42.83 5.14
3613 3846 3.124921 AACGCCAGCGATTTCGGG 61.125 61.111 20.32 0.00 42.83 5.14
3614 3847 2.098298 CAACGCCAGCGATTTCGG 59.902 61.111 20.32 0.00 42.83 4.30
3615 3848 2.098298 CCAACGCCAGCGATTTCG 59.902 61.111 20.32 0.00 42.83 3.46
3616 3849 0.454452 GAACCAACGCCAGCGATTTC 60.454 55.000 20.32 10.72 42.83 2.17
3617 3850 1.169661 TGAACCAACGCCAGCGATTT 61.170 50.000 20.32 0.00 42.83 2.17
3618 3851 1.599518 TGAACCAACGCCAGCGATT 60.600 52.632 20.32 6.54 42.83 3.34
3619 3852 2.031919 TGAACCAACGCCAGCGAT 59.968 55.556 20.32 3.46 42.83 4.58
3620 3853 2.970324 GTGAACCAACGCCAGCGA 60.970 61.111 20.32 0.00 42.83 4.93
3621 3854 4.368808 CGTGAACCAACGCCAGCG 62.369 66.667 11.05 11.05 46.03 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.