Multiple sequence alignment - TraesCS6D01G264800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G264800 chr6D 100.000 8890 0 0 1 8890 373427638 373418749 0.000000e+00 16417.0
1 TraesCS6D01G264800 chr6D 82.454 701 90 28 3371 4052 374108101 374107415 4.630000e-162 582.0
2 TraesCS6D01G264800 chr6D 89.594 394 34 6 1545 1934 373425933 373425543 2.230000e-135 494.0
3 TraesCS6D01G264800 chr6D 89.594 394 34 6 1706 2096 373426094 373425705 2.230000e-135 494.0
4 TraesCS6D01G264800 chr6D 77.358 901 132 41 1991 2860 374109048 374108189 1.350000e-127 468.0
5 TraesCS6D01G264800 chr6D 87.218 399 45 3 6568 6964 373420935 373420541 4.900000e-122 449.0
6 TraesCS6D01G264800 chr6D 87.218 399 45 3 6704 7098 373421071 373420675 4.900000e-122 449.0
7 TraesCS6D01G264800 chr6D 84.565 460 56 10 7709 8164 373407801 373407353 8.190000e-120 442.0
8 TraesCS6D01G264800 chr6D 86.932 352 36 8 4569 4913 374107314 374106966 3.890000e-103 387.0
9 TraesCS6D01G264800 chr6D 87.925 265 28 3 6569 6832 373420801 373420540 8.670000e-80 309.0
10 TraesCS6D01G264800 chr6D 87.925 265 28 3 6838 7099 373421070 373420807 8.670000e-80 309.0
11 TraesCS6D01G264800 chr6D 94.565 92 5 0 5670 5761 114587709 114587800 9.300000e-30 143.0
12 TraesCS6D01G264800 chr6D 90.476 63 0 1 5224 5286 373422377 373422321 2.660000e-10 78.7
13 TraesCS6D01G264800 chr6D 90.476 63 0 1 5262 5318 373422415 373422353 2.660000e-10 78.7
14 TraesCS6D01G264800 chr6A 94.278 3600 102 23 1718 5286 515674891 515671365 0.000000e+00 5411.0
15 TraesCS6D01G264800 chr6A 96.762 2409 57 7 5762 8164 515671004 515668611 0.000000e+00 3997.0
16 TraesCS6D01G264800 chr6A 91.115 1947 106 27 2 1934 515676406 515674513 0.000000e+00 2575.0
17 TraesCS6D01G264800 chr6A 94.952 416 19 2 5261 5676 515671422 515671009 0.000000e+00 651.0
18 TraesCS6D01G264800 chr6A 82.528 704 93 22 3371 4052 516160648 516159953 7.690000e-165 592.0
19 TraesCS6D01G264800 chr6A 85.895 475 44 13 7709 8164 515652991 515652521 1.340000e-132 484.0
20 TraesCS6D01G264800 chr6A 86.076 395 54 1 6704 7098 515670194 515669801 2.970000e-114 424.0
21 TraesCS6D01G264800 chr6A 85.464 399 42 7 6568 6964 515670061 515669677 1.390000e-107 401.0
22 TraesCS6D01G264800 chr6A 86.080 352 39 6 4569 4913 516159852 516159504 3.920000e-98 370.0
23 TraesCS6D01G264800 chr6A 81.316 380 36 8 8231 8605 515668600 515668251 8.790000e-70 276.0
24 TraesCS6D01G264800 chr6A 84.615 286 30 10 8605 8890 515666200 515665929 1.140000e-68 272.0
25 TraesCS6D01G264800 chr6A 86.038 265 23 7 6569 6832 515669927 515669676 1.140000e-68 272.0
26 TraesCS6D01G264800 chr6A 93.939 66 4 0 8164 8229 515647085 515647020 5.680000e-17 100.0
27 TraesCS6D01G264800 chr6A 95.918 49 2 0 8161 8209 515668645 515668597 7.400000e-11 80.5
28 TraesCS6D01G264800 chr6B 93.048 2805 120 27 1718 4487 561153585 561150821 0.000000e+00 4030.0
29 TraesCS6D01G264800 chr6B 95.641 2409 78 10 5762 8164 561149563 561147176 0.000000e+00 3842.0
30 TraesCS6D01G264800 chr6B 92.343 1959 105 23 2 1934 561155145 561153206 0.000000e+00 2745.0
31 TraesCS6D01G264800 chr6B 92.404 882 38 11 4544 5425 561150833 561149981 0.000000e+00 1230.0
32 TraesCS6D01G264800 chr6B 82.714 700 90 26 3371 4052 561274954 561274268 2.140000e-165 593.0
33 TraesCS6D01G264800 chr6B 87.528 449 42 11 7708 8146 561010595 561011039 2.860000e-139 507.0
34 TraesCS6D01G264800 chr6B 81.240 629 88 18 2245 2860 561275653 561275042 1.740000e-131 481.0
35 TraesCS6D01G264800 chr6B 87.250 400 41 6 6568 6964 561148634 561148242 1.760000e-121 448.0
36 TraesCS6D01G264800 chr6B 86.835 395 47 3 6704 7098 561148764 561148375 3.810000e-118 436.0
37 TraesCS6D01G264800 chr6B 86.080 352 39 8 4569 4913 561274167 561273819 3.920000e-98 370.0
38 TraesCS6D01G264800 chr6B 92.218 257 17 3 5420 5676 561149821 561149568 2.360000e-95 361.0
39 TraesCS6D01G264800 chr6B 88.213 263 23 5 6572 6832 561148497 561148241 3.120000e-79 307.0
40 TraesCS6D01G264800 chr6B 86.641 262 31 2 6838 7099 561148763 561148506 4.060000e-73 287.0
41 TraesCS6D01G264800 chr6B 82.490 257 32 7 7908 8160 561038553 561038800 6.990000e-51 213.0
42 TraesCS6D01G264800 chr6B 91.176 136 9 2 6568 6702 561148371 561148238 1.970000e-41 182.0
43 TraesCS6D01G264800 chr6B 84.564 149 14 3 7732 7874 561038403 561038548 1.200000e-28 139.0
44 TraesCS6D01G264800 chr7D 81.389 360 48 17 3631 3986 184099054 184099398 8.790000e-70 276.0
45 TraesCS6D01G264800 chr7B 80.863 371 43 22 3624 3989 153325995 153326342 5.290000e-67 267.0
46 TraesCS6D01G264800 chr7B 97.778 90 2 0 5670 5759 514630106 514630017 1.200000e-33 156.0
47 TraesCS6D01G264800 chr7A 80.328 366 53 16 3631 3992 186641565 186641215 8.850000e-65 259.0
48 TraesCS6D01G264800 chr4B 97.802 91 2 0 5670 5760 283233775 283233865 3.320000e-34 158.0
49 TraesCS6D01G264800 chr3A 98.864 88 1 0 5674 5761 436662063 436662150 3.320000e-34 158.0
50 TraesCS6D01G264800 chr5B 97.778 90 2 0 5670 5759 706389110 706389199 1.200000e-33 156.0
51 TraesCS6D01G264800 chr4D 97.778 90 1 1 5672 5761 62006720 62006808 4.300000e-33 154.0
52 TraesCS6D01G264800 chr4A 97.753 89 2 0 5671 5759 241153027 241152939 4.300000e-33 154.0
53 TraesCS6D01G264800 chr3D 97.753 89 2 0 5672 5760 23225579 23225491 4.300000e-33 154.0
54 TraesCS6D01G264800 chr2D 95.789 95 2 2 5670 5763 325754012 325754105 1.550000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G264800 chr6D 373418749 373427638 8889 True 16417.000000 16417 100.000000 1 8890 1 chr6D.!!$R2 8889
1 TraesCS6D01G264800 chr6D 374106966 374109048 2082 True 479.000000 582 82.248000 1991 4913 3 chr6D.!!$R4 2922
2 TraesCS6D01G264800 chr6D 373420540 373426094 5554 True 332.675000 494 88.803250 1545 7099 8 chr6D.!!$R3 5554
3 TraesCS6D01G264800 chr6A 515665929 515676406 10477 True 1435.950000 5411 89.653400 2 8890 10 chr6A.!!$R3 8888
4 TraesCS6D01G264800 chr6A 516159504 516160648 1144 True 481.000000 592 84.304000 3371 4913 2 chr6A.!!$R4 1542
5 TraesCS6D01G264800 chr6B 561147176 561155145 7969 True 1386.800000 4030 90.576900 2 8164 10 chr6B.!!$R1 8162
6 TraesCS6D01G264800 chr6B 561273819 561275653 1834 True 481.333333 593 83.344667 2245 4913 3 chr6B.!!$R2 2668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 928 0.386352 TCTACCGCGTGTTGACTTCG 60.386 55.0 4.92 0.0 0.00 3.79 F
1772 1975 0.037232 GCAGTCTTACGCTTGGGAGT 60.037 55.0 0.00 0.0 0.00 3.85 F
1774 1977 0.037232 AGTCTTACGCTTGGGAGTGC 60.037 55.0 0.00 0.0 36.87 4.40 F
1837 2040 0.106819 GGAGCATGCCTGGATCAGTT 60.107 55.0 15.66 0.0 0.00 3.16 F
5565 6041 1.043816 ATCGATCCGCCAGTCATTCT 58.956 50.0 0.00 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2100 0.033504 ACCGCTGTCGTTCTGTTCAT 59.966 50.000 0.0 0.0 0.0 2.57 R
7138 7623 3.788766 CGAAAAGGGAGCACGCCG 61.789 66.667 0.0 0.0 0.0 6.46 R
7142 7627 1.880027 ACAATGTCGAAAAGGGAGCAC 59.120 47.619 0.0 0.0 0.0 4.40 R
7287 7772 1.504359 TAACAACAAGCTTCCCGTCG 58.496 50.000 0.0 0.0 0.0 5.12 R
8366 8851 0.033601 AAGCACCACCAAACCAGACA 60.034 50.000 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.083806 TCATTCATCGGTGCGTCAGC 61.084 55.000 0.00 0.00 45.41 4.26
61 62 4.457496 CATCGGTGCGTCAGCCCT 62.457 66.667 3.98 0.00 44.33 5.19
62 63 4.148825 ATCGGTGCGTCAGCCCTC 62.149 66.667 3.98 0.00 44.33 4.30
96 100 2.937519 TGTGACCAAAATGCAGGTACA 58.062 42.857 0.00 0.00 38.50 2.90
103 107 1.826385 AAATGCAGGTACACAGGCTC 58.174 50.000 0.00 0.00 0.00 4.70
109 113 2.506438 GTACACAGGCTCCGACGC 60.506 66.667 0.00 0.00 0.00 5.19
194 198 1.674057 CCCTCGTCATGGCCCTATC 59.326 63.158 0.00 0.00 0.00 2.08
195 199 1.674057 CCTCGTCATGGCCCTATCC 59.326 63.158 0.00 0.00 0.00 2.59
196 200 1.674057 CTCGTCATGGCCCTATCCC 59.326 63.158 0.00 0.00 0.00 3.85
197 201 2.159819 CTCGTCATGGCCCTATCCCG 62.160 65.000 0.00 0.00 0.00 5.14
344 359 3.702048 CCAGAACGGGGAGCGGAA 61.702 66.667 0.00 0.00 0.00 4.30
345 360 2.345991 CAGAACGGGGAGCGGAAA 59.654 61.111 0.00 0.00 0.00 3.13
346 361 1.302192 CAGAACGGGGAGCGGAAAA 60.302 57.895 0.00 0.00 0.00 2.29
347 362 0.676782 CAGAACGGGGAGCGGAAAAT 60.677 55.000 0.00 0.00 0.00 1.82
348 363 0.906775 AGAACGGGGAGCGGAAAATA 59.093 50.000 0.00 0.00 0.00 1.40
349 364 1.134491 AGAACGGGGAGCGGAAAATAG 60.134 52.381 0.00 0.00 0.00 1.73
350 365 0.616891 AACGGGGAGCGGAAAATAGT 59.383 50.000 0.00 0.00 0.00 2.12
769 806 4.673328 TCAATGATTTTCAGGGAGGGAA 57.327 40.909 0.00 0.00 0.00 3.97
847 886 4.174762 ACTTTCTACTCGATTCGCTTTCC 58.825 43.478 0.00 0.00 0.00 3.13
858 897 1.948104 TCGCTTTCCCCGTTGATATG 58.052 50.000 0.00 0.00 0.00 1.78
889 928 0.386352 TCTACCGCGTGTTGACTTCG 60.386 55.000 4.92 0.00 0.00 3.79
921 960 2.416547 CTGCGGATTTTCTCGTCATGTT 59.583 45.455 0.00 0.00 0.00 2.71
927 966 4.618489 GGATTTTCTCGTCATGTTTGCTTG 59.382 41.667 0.00 0.00 0.00 4.01
939 978 6.472163 GTCATGTTTGCTTGTAATTATTCCCG 59.528 38.462 0.00 0.00 0.00 5.14
954 993 1.073199 CCCGAAGTGCCCAGAAACT 59.927 57.895 0.00 0.00 0.00 2.66
957 996 1.079503 CGAAGTGCCCAGAAACTAGC 58.920 55.000 0.00 0.00 0.00 3.42
958 997 1.079503 GAAGTGCCCAGAAACTAGCG 58.920 55.000 0.00 0.00 0.00 4.26
1022 1061 1.613255 GGAATGGAAACTGCGGAAGGA 60.613 52.381 0.00 0.00 0.00 3.36
1047 1087 3.863142 AGATTTGCAGCAATTCCTGTC 57.137 42.857 21.28 8.87 35.28 3.51
1072 1112 2.113860 TGGCAACTGCTCTTACCATC 57.886 50.000 1.06 0.00 41.70 3.51
1163 1205 0.385974 GCGTGGTTGCTGATGTTGTC 60.386 55.000 0.00 0.00 0.00 3.18
1164 1206 0.943673 CGTGGTTGCTGATGTTGTCA 59.056 50.000 0.00 0.00 35.05 3.58
1170 1212 0.889994 TGCTGATGTTGTCATTGGCC 59.110 50.000 0.00 0.00 35.97 5.36
1193 1235 1.978580 CTGTTTACAGGTCAGGGAGGT 59.021 52.381 1.88 0.00 40.20 3.85
1198 1240 1.821088 ACAGGTCAGGGAGGTTTCTT 58.179 50.000 0.00 0.00 0.00 2.52
1399 1441 2.416202 TGTATTGTTGTGATCGCTGCAG 59.584 45.455 10.11 10.11 0.00 4.41
1450 1492 5.760253 CAGGTCTTGTTGTGTTATCAGAAGT 59.240 40.000 0.00 0.00 0.00 3.01
1455 1497 8.181573 GTCTTGTTGTGTTATCAGAAGTTTGAA 58.818 33.333 0.00 0.00 0.00 2.69
1457 1499 6.482835 TGTTGTGTTATCAGAAGTTTGAACG 58.517 36.000 0.00 0.00 0.00 3.95
1463 1505 8.521059 GTGTTATCAGAAGTTTGAACGTTTTTC 58.479 33.333 0.46 2.65 0.00 2.29
1466 1508 5.636837 TCAGAAGTTTGAACGTTTTTCCAG 58.363 37.500 0.46 0.00 0.00 3.86
1539 1581 2.040278 ACTAACATGGAGCAAGCCTGAA 59.960 45.455 0.00 0.00 0.00 3.02
1540 1582 1.251251 AACATGGAGCAAGCCTGAAC 58.749 50.000 0.00 0.00 0.00 3.18
1541 1583 0.403271 ACATGGAGCAAGCCTGAACT 59.597 50.000 0.00 0.00 0.00 3.01
1715 1918 7.634671 ATGACTTGATTGTAGCATTGATTGA 57.365 32.000 0.00 0.00 0.00 2.57
1753 1956 2.232452 AGAGGGATGAACAGAACGACAG 59.768 50.000 0.00 0.00 0.00 3.51
1754 1957 1.079503 GGGATGAACAGAACGACAGC 58.920 55.000 0.00 0.00 0.00 4.40
1755 1958 1.608025 GGGATGAACAGAACGACAGCA 60.608 52.381 0.00 0.00 0.00 4.41
1756 1959 1.728971 GGATGAACAGAACGACAGCAG 59.271 52.381 0.00 0.00 0.00 4.24
1757 1960 2.408050 GATGAACAGAACGACAGCAGT 58.592 47.619 0.00 0.00 0.00 4.40
1758 1961 1.852942 TGAACAGAACGACAGCAGTC 58.147 50.000 0.00 0.00 41.46 3.51
1759 1962 1.409064 TGAACAGAACGACAGCAGTCT 59.591 47.619 7.71 0.00 42.73 3.24
1760 1963 2.159099 TGAACAGAACGACAGCAGTCTT 60.159 45.455 7.71 0.00 42.73 3.01
1761 1964 3.067601 TGAACAGAACGACAGCAGTCTTA 59.932 43.478 7.71 0.00 42.73 2.10
1762 1965 3.014604 ACAGAACGACAGCAGTCTTAC 57.985 47.619 7.71 0.00 42.73 2.34
1763 1966 1.979469 CAGAACGACAGCAGTCTTACG 59.021 52.381 7.71 0.00 42.73 3.18
1764 1967 0.708918 GAACGACAGCAGTCTTACGC 59.291 55.000 7.71 0.00 42.73 4.42
1765 1968 0.314302 AACGACAGCAGTCTTACGCT 59.686 50.000 7.71 0.00 42.73 5.07
1766 1969 0.314302 ACGACAGCAGTCTTACGCTT 59.686 50.000 7.71 0.00 42.73 4.68
1767 1970 0.710567 CGACAGCAGTCTTACGCTTG 59.289 55.000 7.71 0.00 42.73 4.01
1768 1971 1.071605 GACAGCAGTCTTACGCTTGG 58.928 55.000 1.35 0.00 41.64 3.61
1769 1972 0.320771 ACAGCAGTCTTACGCTTGGG 60.321 55.000 0.00 0.00 35.96 4.12
1770 1973 0.037326 CAGCAGTCTTACGCTTGGGA 60.037 55.000 0.00 0.00 35.96 4.37
1771 1974 0.247736 AGCAGTCTTACGCTTGGGAG 59.752 55.000 0.00 0.00 33.81 4.30
1772 1975 0.037232 GCAGTCTTACGCTTGGGAGT 60.037 55.000 0.00 0.00 0.00 3.85
1773 1976 1.714794 CAGTCTTACGCTTGGGAGTG 58.285 55.000 0.00 0.00 39.33 3.51
1774 1977 0.037232 AGTCTTACGCTTGGGAGTGC 60.037 55.000 0.00 0.00 36.87 4.40
1775 1978 0.037232 GTCTTACGCTTGGGAGTGCT 60.037 55.000 0.00 0.00 36.87 4.40
1776 1979 1.203994 GTCTTACGCTTGGGAGTGCTA 59.796 52.381 0.00 0.00 36.87 3.49
1777 1980 1.203994 TCTTACGCTTGGGAGTGCTAC 59.796 52.381 0.00 0.00 36.87 3.58
1778 1981 0.108992 TTACGCTTGGGAGTGCTACG 60.109 55.000 0.00 0.00 36.87 3.51
1779 1982 1.246056 TACGCTTGGGAGTGCTACGT 61.246 55.000 0.00 0.00 36.87 3.57
1780 1983 1.246056 ACGCTTGGGAGTGCTACGTA 61.246 55.000 0.00 0.00 36.87 3.57
1781 1984 0.108992 CGCTTGGGAGTGCTACGTAA 60.109 55.000 0.00 0.00 0.00 3.18
1782 1985 1.470979 CGCTTGGGAGTGCTACGTAAT 60.471 52.381 0.00 0.00 0.00 1.89
1783 1986 2.202566 GCTTGGGAGTGCTACGTAATC 58.797 52.381 0.00 0.00 0.00 1.75
1784 1987 2.822764 CTTGGGAGTGCTACGTAATCC 58.177 52.381 0.00 2.21 32.00 3.01
1785 1988 2.154567 TGGGAGTGCTACGTAATCCT 57.845 50.000 12.75 2.57 33.25 3.24
1786 1989 1.754803 TGGGAGTGCTACGTAATCCTG 59.245 52.381 12.75 0.00 33.25 3.86
1787 1990 2.029623 GGGAGTGCTACGTAATCCTGA 58.970 52.381 12.75 0.00 33.25 3.86
1788 1991 2.628657 GGGAGTGCTACGTAATCCTGAT 59.371 50.000 12.75 0.00 33.25 2.90
1789 1992 3.553096 GGGAGTGCTACGTAATCCTGATG 60.553 52.174 12.75 0.00 33.25 3.07
1790 1993 3.053455 GAGTGCTACGTAATCCTGATGC 58.947 50.000 0.00 0.00 0.00 3.91
1791 1994 2.695666 AGTGCTACGTAATCCTGATGCT 59.304 45.455 0.00 0.00 0.00 3.79
1792 1995 2.797156 GTGCTACGTAATCCTGATGCTG 59.203 50.000 0.00 0.00 0.00 4.41
1793 1996 1.795286 GCTACGTAATCCTGATGCTGC 59.205 52.381 0.00 0.00 0.00 5.25
1794 1997 2.546795 GCTACGTAATCCTGATGCTGCT 60.547 50.000 0.00 0.00 0.00 4.24
1795 1998 2.698855 ACGTAATCCTGATGCTGCTT 57.301 45.000 0.00 0.00 0.00 3.91
1796 1999 2.283298 ACGTAATCCTGATGCTGCTTG 58.717 47.619 0.00 0.00 0.00 4.01
1797 2000 2.283298 CGTAATCCTGATGCTGCTTGT 58.717 47.619 0.00 0.00 0.00 3.16
1798 2001 2.286294 CGTAATCCTGATGCTGCTTGTC 59.714 50.000 0.00 0.00 0.00 3.18
1799 2002 1.376543 AATCCTGATGCTGCTTGTCG 58.623 50.000 0.00 0.00 0.00 4.35
1800 2003 0.251354 ATCCTGATGCTGCTTGTCGT 59.749 50.000 0.00 0.00 0.00 4.34
1801 2004 0.894835 TCCTGATGCTGCTTGTCGTA 59.105 50.000 0.00 0.00 0.00 3.43
1802 2005 1.482182 TCCTGATGCTGCTTGTCGTAT 59.518 47.619 0.00 0.00 0.00 3.06
1803 2006 2.693074 TCCTGATGCTGCTTGTCGTATA 59.307 45.455 0.00 0.00 0.00 1.47
1804 2007 2.797156 CCTGATGCTGCTTGTCGTATAC 59.203 50.000 0.00 0.00 0.00 1.47
1805 2008 3.491619 CCTGATGCTGCTTGTCGTATACT 60.492 47.826 0.00 0.00 0.00 2.12
1806 2009 4.261614 CCTGATGCTGCTTGTCGTATACTA 60.262 45.833 0.00 0.00 0.00 1.82
1807 2010 4.607955 TGATGCTGCTTGTCGTATACTAC 58.392 43.478 0.00 0.61 0.00 2.73
1808 2011 4.097286 TGATGCTGCTTGTCGTATACTACA 59.903 41.667 6.15 6.15 0.00 2.74
1809 2012 4.649088 TGCTGCTTGTCGTATACTACAT 57.351 40.909 10.69 0.00 0.00 2.29
1810 2013 5.761165 TGCTGCTTGTCGTATACTACATA 57.239 39.130 10.69 2.70 0.00 2.29
1811 2014 6.327279 TGCTGCTTGTCGTATACTACATAT 57.673 37.500 10.69 0.00 0.00 1.78
1812 2015 6.745116 TGCTGCTTGTCGTATACTACATATT 58.255 36.000 10.69 0.00 0.00 1.28
1813 2016 7.878036 TGCTGCTTGTCGTATACTACATATTA 58.122 34.615 10.69 0.00 0.00 0.98
1814 2017 8.354426 TGCTGCTTGTCGTATACTACATATTAA 58.646 33.333 10.69 0.00 0.00 1.40
1815 2018 8.636843 GCTGCTTGTCGTATACTACATATTAAC 58.363 37.037 10.69 0.00 0.00 2.01
1816 2019 9.673454 CTGCTTGTCGTATACTACATATTAACA 57.327 33.333 10.69 3.78 0.00 2.41
1822 2025 9.286946 GTCGTATACTACATATTAACATGGAGC 57.713 37.037 5.84 0.00 40.08 4.70
1823 2026 9.016438 TCGTATACTACATATTAACATGGAGCA 57.984 33.333 5.84 0.00 40.08 4.26
1824 2027 9.803315 CGTATACTACATATTAACATGGAGCAT 57.197 33.333 5.84 1.46 40.08 3.79
1826 2029 6.808008 ACTACATATTAACATGGAGCATGC 57.192 37.500 10.51 10.51 44.80 4.06
1827 2030 5.707298 ACTACATATTAACATGGAGCATGCC 59.293 40.000 15.66 5.80 44.80 4.40
1828 2031 4.733165 ACATATTAACATGGAGCATGCCT 58.267 39.130 15.66 1.01 44.80 4.75
1829 2032 4.521639 ACATATTAACATGGAGCATGCCTG 59.478 41.667 15.66 9.71 44.80 4.85
1830 2033 1.766494 TTAACATGGAGCATGCCTGG 58.234 50.000 15.66 2.34 44.80 4.45
1831 2034 0.918258 TAACATGGAGCATGCCTGGA 59.082 50.000 15.66 0.00 44.80 3.86
1832 2035 0.260816 AACATGGAGCATGCCTGGAT 59.739 50.000 15.66 0.00 44.80 3.41
1833 2036 0.178998 ACATGGAGCATGCCTGGATC 60.179 55.000 15.66 4.52 44.80 3.36
1834 2037 0.179001 CATGGAGCATGCCTGGATCA 60.179 55.000 15.66 4.44 35.02 2.92
1835 2038 0.110678 ATGGAGCATGCCTGGATCAG 59.889 55.000 15.66 0.00 0.00 2.90
1836 2039 1.276859 TGGAGCATGCCTGGATCAGT 61.277 55.000 15.66 0.00 0.00 3.41
1837 2040 0.106819 GGAGCATGCCTGGATCAGTT 60.107 55.000 15.66 0.00 0.00 3.16
1838 2041 1.141657 GGAGCATGCCTGGATCAGTTA 59.858 52.381 15.66 0.00 0.00 2.24
1839 2042 2.224719 GGAGCATGCCTGGATCAGTTAT 60.225 50.000 15.66 0.00 0.00 1.89
1840 2043 2.812591 GAGCATGCCTGGATCAGTTATG 59.187 50.000 15.66 0.00 0.00 1.90
1841 2044 2.174210 AGCATGCCTGGATCAGTTATGT 59.826 45.455 15.66 0.00 30.77 2.29
1842 2045 2.292569 GCATGCCTGGATCAGTTATGTG 59.707 50.000 6.36 0.00 30.77 3.21
1843 2046 3.812262 CATGCCTGGATCAGTTATGTGA 58.188 45.455 0.00 0.00 0.00 3.58
1844 2047 3.998913 TGCCTGGATCAGTTATGTGAA 57.001 42.857 0.00 0.00 0.00 3.18
1845 2048 3.609853 TGCCTGGATCAGTTATGTGAAC 58.390 45.455 0.00 0.00 0.00 3.18
1846 2049 3.008923 TGCCTGGATCAGTTATGTGAACA 59.991 43.478 0.00 0.00 0.00 3.18
1847 2050 4.202441 GCCTGGATCAGTTATGTGAACAT 58.798 43.478 0.00 0.95 40.22 2.71
1848 2051 5.104569 TGCCTGGATCAGTTATGTGAACATA 60.105 40.000 0.00 0.00 37.76 2.29
1849 2052 6.000219 GCCTGGATCAGTTATGTGAACATAT 59.000 40.000 0.00 0.00 38.49 1.78
1850 2053 7.161404 GCCTGGATCAGTTATGTGAACATATA 58.839 38.462 0.00 0.00 38.49 0.86
1851 2054 7.661437 GCCTGGATCAGTTATGTGAACATATAA 59.339 37.037 0.00 0.44 38.49 0.98
1852 2055 9.559732 CCTGGATCAGTTATGTGAACATATAAA 57.440 33.333 4.07 0.00 38.49 1.40
1875 2078 8.697846 AAATGACTTGATTGTAGCATTGATTG 57.302 30.769 0.00 0.00 0.00 2.67
1876 2079 6.198650 TGACTTGATTGTAGCATTGATTGG 57.801 37.500 0.00 0.00 0.00 3.16
1877 2080 5.002464 ACTTGATTGTAGCATTGATTGGC 57.998 39.130 0.00 0.00 0.00 4.52
1878 2081 4.142093 ACTTGATTGTAGCATTGATTGGCC 60.142 41.667 0.00 0.00 0.00 5.36
1879 2082 3.363627 TGATTGTAGCATTGATTGGCCA 58.636 40.909 0.00 0.00 0.00 5.36
1880 2083 3.962063 TGATTGTAGCATTGATTGGCCAT 59.038 39.130 6.09 0.00 0.00 4.40
1881 2084 4.406326 TGATTGTAGCATTGATTGGCCATT 59.594 37.500 6.09 1.72 0.00 3.16
1882 2085 4.389890 TTGTAGCATTGATTGGCCATTC 57.610 40.909 18.80 18.80 0.00 2.67
1883 2086 3.634504 TGTAGCATTGATTGGCCATTCT 58.365 40.909 24.22 9.66 0.00 2.40
1884 2087 3.633525 TGTAGCATTGATTGGCCATTCTC 59.366 43.478 24.22 14.48 0.00 2.87
1885 2088 3.028094 AGCATTGATTGGCCATTCTCT 57.972 42.857 24.22 14.50 0.00 3.10
1886 2089 3.371965 AGCATTGATTGGCCATTCTCTT 58.628 40.909 24.22 9.59 0.00 2.85
1887 2090 3.132289 AGCATTGATTGGCCATTCTCTTG 59.868 43.478 24.22 19.00 0.00 3.02
1888 2091 3.118884 GCATTGATTGGCCATTCTCTTGT 60.119 43.478 24.22 6.97 0.00 3.16
1889 2092 4.622220 GCATTGATTGGCCATTCTCTTGTT 60.622 41.667 24.22 4.59 0.00 2.83
1890 2093 5.484715 CATTGATTGGCCATTCTCTTGTTT 58.515 37.500 24.22 3.45 0.00 2.83
1891 2094 6.632909 CATTGATTGGCCATTCTCTTGTTTA 58.367 36.000 24.22 3.11 0.00 2.01
1892 2095 5.902613 TGATTGGCCATTCTCTTGTTTAG 57.097 39.130 24.22 0.00 0.00 1.85
1893 2096 5.569355 TGATTGGCCATTCTCTTGTTTAGA 58.431 37.500 24.22 0.00 0.00 2.10
1905 2108 6.042638 CTCTTGTTTAGAGGGATGAACAGA 57.957 41.667 0.00 0.00 45.61 3.41
1906 2109 6.433847 TCTTGTTTAGAGGGATGAACAGAA 57.566 37.500 0.00 0.00 33.97 3.02
1907 2110 6.231211 TCTTGTTTAGAGGGATGAACAGAAC 58.769 40.000 0.00 0.00 33.97 3.01
1908 2111 4.566004 TGTTTAGAGGGATGAACAGAACG 58.434 43.478 0.00 0.00 0.00 3.95
1909 2112 4.282449 TGTTTAGAGGGATGAACAGAACGA 59.718 41.667 0.00 0.00 0.00 3.85
1910 2113 4.451629 TTAGAGGGATGAACAGAACGAC 57.548 45.455 0.00 0.00 0.00 4.34
1911 2114 2.248248 AGAGGGATGAACAGAACGACA 58.752 47.619 0.00 0.00 0.00 4.35
5565 6041 1.043816 ATCGATCCGCCAGTCATTCT 58.956 50.000 0.00 0.00 0.00 2.40
7142 7627 1.846541 TTTTCTTCCTTTTTGCGGCG 58.153 45.000 0.51 0.51 0.00 6.46
7287 7772 2.547642 GCAGCATACATCTCTGAGTCCC 60.548 54.545 4.32 0.00 0.00 4.46
7362 7847 6.613699 TGATGCCAATTCAGGAAAGGTATAT 58.386 36.000 7.20 0.00 29.84 0.86
7385 7870 1.427368 TCCCAGGCATAAAACACCAGT 59.573 47.619 0.00 0.00 0.00 4.00
7703 8188 1.841663 CGGAACCAGCGGACTTTGTG 61.842 60.000 1.50 0.00 0.00 3.33
7808 8293 1.734477 CACAGACGCCCTCTTCGTG 60.734 63.158 0.00 0.00 40.59 4.35
7881 8366 2.244695 ACAACTGGTACCATGACTCGA 58.755 47.619 20.06 0.00 0.00 4.04
8133 8618 4.395231 GGTTCCAGTTAGTTGTAAGGCATC 59.605 45.833 0.00 0.00 0.00 3.91
8134 8619 5.246307 GTTCCAGTTAGTTGTAAGGCATCT 58.754 41.667 0.00 0.00 0.00 2.90
8135 8620 5.499004 TCCAGTTAGTTGTAAGGCATCTT 57.501 39.130 0.00 0.00 37.03 2.40
8136 8621 5.245531 TCCAGTTAGTTGTAAGGCATCTTG 58.754 41.667 0.00 0.00 34.59 3.02
8137 8622 5.012664 TCCAGTTAGTTGTAAGGCATCTTGA 59.987 40.000 0.00 0.00 34.59 3.02
8138 8623 5.122396 CCAGTTAGTTGTAAGGCATCTTGAC 59.878 44.000 0.00 0.00 34.59 3.18
8139 8624 5.934625 CAGTTAGTTGTAAGGCATCTTGACT 59.065 40.000 0.00 0.00 37.28 3.41
8140 8625 6.091441 CAGTTAGTTGTAAGGCATCTTGACTC 59.909 42.308 0.00 0.00 31.94 3.36
8141 8626 4.623932 AGTTGTAAGGCATCTTGACTCA 57.376 40.909 0.00 0.00 31.94 3.41
8142 8627 4.973168 AGTTGTAAGGCATCTTGACTCAA 58.027 39.130 0.00 0.00 31.94 3.02
8143 8628 4.999950 AGTTGTAAGGCATCTTGACTCAAG 59.000 41.667 12.02 12.02 31.94 3.02
8144 8629 4.623932 TGTAAGGCATCTTGACTCAAGT 57.376 40.909 16.75 3.93 31.94 3.16
8145 8630 4.569943 TGTAAGGCATCTTGACTCAAGTC 58.430 43.478 16.75 3.13 31.94 3.01
8160 8645 4.138722 GTCGAGTGACGCTGTGAG 57.861 61.111 0.00 0.00 42.26 3.51
8161 8646 2.083522 GTCGAGTGACGCTGTGAGC 61.084 63.158 0.00 0.00 42.26 4.26
8162 8647 2.050077 CGAGTGACGCTGTGAGCA 60.050 61.111 0.00 0.00 42.58 4.26
8163 8648 1.445066 CGAGTGACGCTGTGAGCAT 60.445 57.895 0.00 0.00 42.58 3.79
8173 8658 2.630158 GCTGTGAGCATCTTGACTCAT 58.370 47.619 0.00 0.00 44.29 2.90
8205 8690 2.472886 GCTGTGAACATTGTCGTCGATG 60.473 50.000 8.16 8.16 40.33 3.84
8206 8691 2.986479 CTGTGAACATTGTCGTCGATGA 59.014 45.455 15.57 2.39 38.46 2.92
8207 8692 3.584834 TGTGAACATTGTCGTCGATGAT 58.415 40.909 11.16 4.76 38.46 2.45
8208 8693 3.367630 TGTGAACATTGTCGTCGATGATG 59.632 43.478 11.16 7.86 38.46 3.07
8209 8694 2.929398 TGAACATTGTCGTCGATGATGG 59.071 45.455 11.16 3.70 38.46 3.51
8210 8695 2.672961 ACATTGTCGTCGATGATGGT 57.327 45.000 11.16 4.32 38.46 3.55
8211 8696 2.270923 ACATTGTCGTCGATGATGGTG 58.729 47.619 11.16 11.66 38.46 4.17
8212 8697 2.270923 CATTGTCGTCGATGATGGTGT 58.729 47.619 11.16 0.00 37.58 4.16
8213 8698 1.708822 TTGTCGTCGATGATGGTGTG 58.291 50.000 11.16 0.00 0.00 3.82
8214 8699 0.885196 TGTCGTCGATGATGGTGTGA 59.115 50.000 11.16 0.00 0.00 3.58
8215 8700 1.269166 GTCGTCGATGATGGTGTGAC 58.731 55.000 11.16 0.00 0.00 3.67
8216 8701 1.135373 GTCGTCGATGATGGTGTGACT 60.135 52.381 11.16 0.00 0.00 3.41
8217 8702 1.544246 TCGTCGATGATGGTGTGACTT 59.456 47.619 2.39 0.00 0.00 3.01
8218 8703 1.655597 CGTCGATGATGGTGTGACTTG 59.344 52.381 0.00 0.00 0.00 3.16
8219 8704 2.688507 GTCGATGATGGTGTGACTTGT 58.311 47.619 0.00 0.00 0.00 3.16
8220 8705 2.413112 GTCGATGATGGTGTGACTTGTG 59.587 50.000 0.00 0.00 0.00 3.33
8221 8706 2.298729 TCGATGATGGTGTGACTTGTGA 59.701 45.455 0.00 0.00 0.00 3.58
8222 8707 2.669924 CGATGATGGTGTGACTTGTGAG 59.330 50.000 0.00 0.00 0.00 3.51
8223 8708 3.614870 CGATGATGGTGTGACTTGTGAGA 60.615 47.826 0.00 0.00 0.00 3.27
8224 8709 4.511527 GATGATGGTGTGACTTGTGAGAT 58.488 43.478 0.00 0.00 0.00 2.75
8225 8710 3.667360 TGATGGTGTGACTTGTGAGATG 58.333 45.455 0.00 0.00 0.00 2.90
8226 8711 3.324556 TGATGGTGTGACTTGTGAGATGA 59.675 43.478 0.00 0.00 0.00 2.92
8227 8712 3.836365 TGGTGTGACTTGTGAGATGAA 57.164 42.857 0.00 0.00 0.00 2.57
8228 8713 3.466836 TGGTGTGACTTGTGAGATGAAC 58.533 45.455 0.00 0.00 0.00 3.18
8229 8714 2.476619 GGTGTGACTTGTGAGATGAACG 59.523 50.000 0.00 0.00 0.00 3.95
8234 8719 2.932614 GACTTGTGAGATGAACGGATGG 59.067 50.000 0.00 0.00 0.00 3.51
8245 8730 1.531149 GAACGGATGGTGTGACTTGTG 59.469 52.381 0.00 0.00 0.00 3.33
8246 8731 0.756294 ACGGATGGTGTGACTTGTGA 59.244 50.000 0.00 0.00 0.00 3.58
8255 8740 2.476619 GTGTGACTTGTGAGATGAACGG 59.523 50.000 0.00 0.00 0.00 4.44
8272 8757 3.512516 GCATCCGCTTCACCTGCC 61.513 66.667 0.00 0.00 34.30 4.85
8274 8759 1.377725 CATCCGCTTCACCTGCCTT 60.378 57.895 0.00 0.00 0.00 4.35
8283 8768 2.113860 TCACCTGCCTTATGTTCTGC 57.886 50.000 0.00 0.00 0.00 4.26
8291 8776 4.402829 TGCCTTATGTTCTGCCTGTTAAA 58.597 39.130 0.00 0.00 0.00 1.52
8300 8785 7.609760 TGTTCTGCCTGTTAAATGTATGTAG 57.390 36.000 0.00 0.00 0.00 2.74
8303 8788 8.512138 GTTCTGCCTGTTAAATGTATGTAGTTT 58.488 33.333 0.00 0.00 0.00 2.66
8304 8789 8.039603 TCTGCCTGTTAAATGTATGTAGTTTG 57.960 34.615 0.00 0.00 0.00 2.93
8309 8794 7.273381 CCTGTTAAATGTATGTAGTTTGCTTGC 59.727 37.037 0.00 0.00 0.00 4.01
8327 8812 1.085091 GCTGGTCAGAATCTGTGCTG 58.915 55.000 10.36 1.59 32.61 4.41
8332 8817 2.028112 GGTCAGAATCTGTGCTGTGGTA 60.028 50.000 10.36 0.00 33.90 3.25
8333 8818 2.996621 GTCAGAATCTGTGCTGTGGTAC 59.003 50.000 10.36 0.00 33.90 3.34
8334 8819 2.632512 TCAGAATCTGTGCTGTGGTACA 59.367 45.455 10.36 0.00 36.66 2.90
8335 8820 3.261643 TCAGAATCTGTGCTGTGGTACAT 59.738 43.478 10.36 0.00 37.43 2.29
8336 8821 4.466015 TCAGAATCTGTGCTGTGGTACATA 59.534 41.667 10.36 0.00 37.43 2.29
8337 8822 5.394553 TCAGAATCTGTGCTGTGGTACATAG 60.395 44.000 10.36 0.00 40.44 2.23
8338 8823 8.302595 TCAGAATCTGTGCTGTGGTACATAGG 62.303 46.154 10.36 0.00 39.13 2.57
8366 8851 1.352352 CCCCTGTCAGTTTGAGTGGAT 59.648 52.381 0.00 0.00 0.00 3.41
8401 8886 0.249489 GCTTGTCATACGGAGCGGAT 60.249 55.000 0.00 0.00 0.00 4.18
8414 8899 0.322816 AGCGGATGACATGGCTTTGT 60.323 50.000 0.00 0.00 30.04 2.83
8415 8900 0.179156 GCGGATGACATGGCTTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
8416 8901 1.167851 CGGATGACATGGCTTTGTGT 58.832 50.000 0.00 0.00 0.00 3.72
8417 8902 1.131126 CGGATGACATGGCTTTGTGTC 59.869 52.381 0.00 0.00 43.81 3.67
8418 8903 2.440409 GGATGACATGGCTTTGTGTCT 58.560 47.619 0.00 0.00 43.87 3.41
8419 8904 2.821969 GGATGACATGGCTTTGTGTCTT 59.178 45.455 0.00 1.10 43.87 3.01
8420 8905 3.366679 GGATGACATGGCTTTGTGTCTTG 60.367 47.826 0.00 0.00 43.87 3.02
8421 8906 1.955778 TGACATGGCTTTGTGTCTTGG 59.044 47.619 0.00 0.00 43.87 3.61
8422 8907 2.229792 GACATGGCTTTGTGTCTTGGA 58.770 47.619 0.00 0.00 41.10 3.53
8427 8912 1.239347 GCTTTGTGTCTTGGACCTCC 58.761 55.000 0.00 0.00 0.00 4.30
8439 8924 0.460722 GGACCTCCGGCTCTAGTTTC 59.539 60.000 0.00 0.00 0.00 2.78
8440 8925 0.100861 GACCTCCGGCTCTAGTTTCG 59.899 60.000 0.00 0.00 0.00 3.46
8441 8926 0.323178 ACCTCCGGCTCTAGTTTCGA 60.323 55.000 0.00 0.00 0.00 3.71
8442 8927 0.100861 CCTCCGGCTCTAGTTTCGAC 59.899 60.000 0.00 0.00 0.00 4.20
8443 8928 1.096416 CTCCGGCTCTAGTTTCGACT 58.904 55.000 0.00 0.00 0.00 4.18
8444 8929 0.809385 TCCGGCTCTAGTTTCGACTG 59.191 55.000 0.00 0.00 0.00 3.51
8445 8930 0.179134 CCGGCTCTAGTTTCGACTGG 60.179 60.000 0.00 0.00 0.00 4.00
8446 8931 0.802607 CGGCTCTAGTTTCGACTGGC 60.803 60.000 0.00 0.00 0.00 4.85
8447 8932 0.802607 GGCTCTAGTTTCGACTGGCG 60.803 60.000 0.00 0.00 42.69 5.69
8499 8984 2.088423 TGTGCGAGGTTTGTGTTTCTT 58.912 42.857 0.00 0.00 0.00 2.52
8505 8990 3.002348 CGAGGTTTGTGTTTCTTGACTCC 59.998 47.826 0.00 0.00 0.00 3.85
8508 8993 4.339247 AGGTTTGTGTTTCTTGACTCCATG 59.661 41.667 0.00 0.00 0.00 3.66
8515 9000 5.049405 GTGTTTCTTGACTCCATGTGGTTAG 60.049 44.000 0.00 0.00 36.34 2.34
8516 9001 5.163248 TGTTTCTTGACTCCATGTGGTTAGA 60.163 40.000 0.00 0.00 36.34 2.10
8518 9003 5.762179 TCTTGACTCCATGTGGTTAGATT 57.238 39.130 0.00 0.00 36.34 2.40
8519 9004 6.126863 TCTTGACTCCATGTGGTTAGATTT 57.873 37.500 0.00 0.00 36.34 2.17
8520 9005 6.542821 TCTTGACTCCATGTGGTTAGATTTT 58.457 36.000 0.00 0.00 36.34 1.82
8521 9006 6.430925 TCTTGACTCCATGTGGTTAGATTTTG 59.569 38.462 0.00 0.00 36.34 2.44
8523 9008 5.473162 TGACTCCATGTGGTTAGATTTTGTG 59.527 40.000 0.00 0.00 36.34 3.33
8552 9040 5.892568 TCTAGGACATCTAGCGTTTTCTTC 58.107 41.667 0.00 0.00 43.93 2.87
8553 9041 4.810191 AGGACATCTAGCGTTTTCTTCT 57.190 40.909 0.00 0.00 0.00 2.85
8554 9042 4.749976 AGGACATCTAGCGTTTTCTTCTC 58.250 43.478 0.00 0.00 0.00 2.87
8555 9043 3.548268 GGACATCTAGCGTTTTCTTCTCG 59.452 47.826 0.00 0.00 0.00 4.04
8562 9050 0.602905 CGTTTTCTTCTCGGGGCAGT 60.603 55.000 0.00 0.00 0.00 4.40
8564 9052 0.762418 TTTTCTTCTCGGGGCAGTGA 59.238 50.000 0.00 0.00 0.00 3.41
8572 9060 1.213537 CGGGGCAGTGATTTGCTTG 59.786 57.895 0.00 0.00 43.57 4.01
8578 9066 2.094078 GGCAGTGATTTGCTTGGCATTA 60.094 45.455 0.00 0.00 43.57 1.90
8583 9071 4.223477 AGTGATTTGCTTGGCATTATGGTT 59.777 37.500 0.00 0.00 38.76 3.67
8584 9072 4.330620 GTGATTTGCTTGGCATTATGGTTG 59.669 41.667 0.00 0.00 38.76 3.77
8585 9073 2.383368 TTGCTTGGCATTATGGTTGC 57.617 45.000 0.00 0.00 38.76 4.17
8595 9084 5.261209 GCATTATGGTTGCCAATGTCTTA 57.739 39.130 0.00 0.00 36.95 2.10
8619 11159 6.073327 TGATCTACATACTTTCTAGCCACG 57.927 41.667 0.00 0.00 0.00 4.94
8620 11160 5.826208 TGATCTACATACTTTCTAGCCACGA 59.174 40.000 0.00 0.00 0.00 4.35
8636 11176 3.431233 GCCACGACCTTTCTACAAGTTAC 59.569 47.826 0.00 0.00 0.00 2.50
8640 11180 4.243270 CGACCTTTCTACAAGTTACTGGG 58.757 47.826 0.00 0.00 0.00 4.45
8643 11183 6.517194 CGACCTTTCTACAAGTTACTGGGTTA 60.517 42.308 0.00 0.00 0.00 2.85
8644 11184 6.766429 ACCTTTCTACAAGTTACTGGGTTAG 58.234 40.000 0.00 0.00 0.00 2.34
8645 11185 6.328410 ACCTTTCTACAAGTTACTGGGTTAGT 59.672 38.462 0.00 0.00 43.56 2.24
8646 11186 7.147426 ACCTTTCTACAAGTTACTGGGTTAGTT 60.147 37.037 0.00 0.00 40.89 2.24
8657 11197 9.281371 AGTTACTGGGTTAGTTTCAATAAGTTC 57.719 33.333 0.00 0.00 40.89 3.01
8666 11206 6.506500 AGTTTCAATAAGTTCATGCTGAGG 57.493 37.500 0.00 0.00 0.00 3.86
8675 11215 2.364842 ATGCTGAGGCGGAGGTCT 60.365 61.111 0.00 0.00 42.25 3.85
8682 11222 4.821589 GGCGGAGGTCTGAAGGCG 62.822 72.222 0.00 0.00 0.00 5.52
8687 11227 0.179097 GGAGGTCTGAAGGCGACATC 60.179 60.000 0.00 0.00 40.40 3.06
8690 11230 0.454600 GGTCTGAAGGCGACATCGTA 59.545 55.000 2.85 0.00 42.22 3.43
8702 11242 3.911940 CGACATCGTATGCTCACAGCAC 61.912 54.545 0.00 0.00 43.83 4.40
8716 11256 0.519792 CAGCACGTCAACGATGCATG 60.520 55.000 22.44 16.32 43.48 4.06
8731 11271 4.505922 CGATGCATGTAGAAGGAAGAAGAC 59.494 45.833 2.46 0.00 0.00 3.01
8732 11272 5.669477 GATGCATGTAGAAGGAAGAAGACT 58.331 41.667 2.46 0.00 0.00 3.24
8733 11273 5.489792 TGCATGTAGAAGGAAGAAGACTT 57.510 39.130 0.00 0.00 39.24 3.01
8734 11274 6.605471 TGCATGTAGAAGGAAGAAGACTTA 57.395 37.500 0.00 0.00 36.39 2.24
8735 11275 6.398918 TGCATGTAGAAGGAAGAAGACTTAC 58.601 40.000 0.00 0.00 37.23 2.34
8745 11285 1.723220 GAAGACTTACTTCGGCACCC 58.277 55.000 0.00 0.00 44.15 4.61
8750 11290 3.518303 AGACTTACTTCGGCACCCTTTAT 59.482 43.478 0.00 0.00 0.00 1.40
8751 11291 4.713321 AGACTTACTTCGGCACCCTTTATA 59.287 41.667 0.00 0.00 0.00 0.98
8752 11292 5.019785 ACTTACTTCGGCACCCTTTATAG 57.980 43.478 0.00 0.00 0.00 1.31
8765 11305 6.128254 GCACCCTTTATAGAGTGTCAGAAAAC 60.128 42.308 0.00 0.00 32.75 2.43
8766 11306 6.934645 CACCCTTTATAGAGTGTCAGAAAACA 59.065 38.462 0.00 0.00 0.00 2.83
8768 11308 7.824779 ACCCTTTATAGAGTGTCAGAAAACATC 59.175 37.037 0.00 0.00 0.00 3.06
8824 11364 9.631639 CTTTTAATTTCTGTAAAGGCGTTTTTG 57.368 29.630 10.01 1.50 0.00 2.44
8828 11368 6.879188 TTTCTGTAAAGGCGTTTTTGAAAG 57.121 33.333 10.01 0.00 0.00 2.62
8833 11373 3.710326 AAGGCGTTTTTGAAAGGTCTC 57.290 42.857 1.38 0.00 0.00 3.36
8877 11417 9.369904 TCTTTTGACCTTCTGAAAAAGAAAATG 57.630 29.630 10.29 3.42 44.38 2.32
8881 11421 6.040842 TGACCTTCTGAAAAAGAAAATGGAGG 59.959 38.462 0.00 0.00 44.38 4.30
8883 11423 6.040955 ACCTTCTGAAAAAGAAAATGGAGGTC 59.959 38.462 0.00 0.00 44.38 3.85
8885 11425 6.639632 TCTGAAAAAGAAAATGGAGGTCTG 57.360 37.500 0.00 0.00 29.54 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.042208 AGGGACTAAGGCTATATGTGTCTTTC 59.958 42.308 3.38 0.00 36.02 2.62
64 65 2.171725 GGTCACATCGGCGCTAACC 61.172 63.158 7.64 1.28 0.00 2.85
76 80 2.621055 GTGTACCTGCATTTTGGTCACA 59.379 45.455 14.71 9.20 37.74 3.58
133 137 2.508439 GGAGGCGCGAAATGACGA 60.508 61.111 12.10 0.00 35.09 4.20
171 175 4.899239 GCCATGACGAGGGCGGAG 62.899 72.222 0.00 0.00 39.75 4.63
197 201 4.716977 AGGGACAGGGACGGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
312 327 3.388024 CGTTCTGGGATTTATCCTCTCCA 59.612 47.826 8.58 0.00 46.35 3.86
349 364 9.678941 GGGAAGAAATGATTAATATTTTCCGAC 57.321 33.333 14.48 9.06 30.46 4.79
350 365 8.564574 CGGGAAGAAATGATTAATATTTTCCGA 58.435 33.333 14.48 0.00 33.88 4.55
565 599 2.429069 GCCAAAAACAGCGCGGAG 60.429 61.111 16.26 5.14 0.00 4.63
575 609 3.896317 CGGGAAAATCCGCCAAAAA 57.104 47.368 0.00 0.00 43.71 1.94
847 886 1.775039 CGCAGGCACATATCAACGGG 61.775 60.000 0.00 0.00 0.00 5.28
858 897 2.006772 CGGTAGAATTCGCAGGCAC 58.993 57.895 0.00 0.00 0.00 5.01
889 928 4.157840 AGAAAATCCGCAGTAAATGGAACC 59.842 41.667 0.00 0.00 34.97 3.62
921 960 5.392595 GCACTTCGGGAATAATTACAAGCAA 60.393 40.000 0.00 0.00 0.00 3.91
927 966 3.547746 TGGGCACTTCGGGAATAATTAC 58.452 45.455 0.00 0.00 0.00 1.89
939 978 1.079503 CGCTAGTTTCTGGGCACTTC 58.920 55.000 0.00 0.00 0.00 3.01
954 993 0.462937 ACATATGTTTGCCCGCGCTA 60.463 50.000 5.56 0.00 35.36 4.26
957 996 0.248054 GTCACATATGTTTGCCCGCG 60.248 55.000 5.37 0.00 0.00 6.46
958 997 0.248054 CGTCACATATGTTTGCCCGC 60.248 55.000 5.37 0.00 0.00 6.13
1022 1061 5.655532 ACAGGAATTGCTGCAAATCTAGAAT 59.344 36.000 25.09 8.32 0.00 2.40
1047 1087 0.381801 AAGAGCAGTTGCCAAACACG 59.618 50.000 0.00 0.00 43.38 4.49
1072 1112 4.608948 AGAACTTCCTACACAAGTCAGG 57.391 45.455 0.00 0.00 32.71 3.86
1127 1167 1.954146 GCACGGTCTCGCTGAAACA 60.954 57.895 0.00 0.00 40.63 2.83
1163 1205 3.157087 ACCTGTAAACAGAAGGCCAATG 58.843 45.455 11.69 2.38 46.59 2.82
1164 1206 3.181434 TGACCTGTAAACAGAAGGCCAAT 60.181 43.478 11.69 0.00 46.59 3.16
1170 1212 3.307059 CCTCCCTGACCTGTAAACAGAAG 60.307 52.174 11.69 6.17 46.59 2.85
1450 1492 4.158764 ACCATCACTGGAAAAACGTTCAAA 59.841 37.500 0.00 0.00 46.37 2.69
1455 1497 4.345859 TCTACCATCACTGGAAAAACGT 57.654 40.909 0.00 0.00 46.37 3.99
1457 1499 5.673818 GCGAATCTACCATCACTGGAAAAAC 60.674 44.000 0.00 0.00 46.37 2.43
1463 1505 5.316028 CGTAAGCGAATCTACCATCACTGG 61.316 50.000 0.00 0.00 44.08 4.00
1466 1508 3.703420 ACGTAAGCGAATCTACCATCAC 58.297 45.455 0.00 0.00 45.62 3.06
1519 1561 2.408271 TCAGGCTTGCTCCATGTTAG 57.592 50.000 0.00 0.00 0.00 2.34
1753 1956 0.037232 ACTCCCAAGCGTAAGACTGC 60.037 55.000 0.00 0.00 43.02 4.40
1754 1957 1.714794 CACTCCCAAGCGTAAGACTG 58.285 55.000 0.00 0.00 43.02 3.51
1755 1958 0.037232 GCACTCCCAAGCGTAAGACT 60.037 55.000 0.00 0.00 43.02 3.24
1756 1959 0.037232 AGCACTCCCAAGCGTAAGAC 60.037 55.000 0.00 0.00 43.02 3.01
1757 1960 1.203994 GTAGCACTCCCAAGCGTAAGA 59.796 52.381 0.00 0.00 43.02 2.10
1758 1961 1.641577 GTAGCACTCCCAAGCGTAAG 58.358 55.000 0.00 0.00 35.48 2.34
1759 1962 0.108992 CGTAGCACTCCCAAGCGTAA 60.109 55.000 0.00 0.00 35.48 3.18
1760 1963 1.246056 ACGTAGCACTCCCAAGCGTA 61.246 55.000 0.00 0.00 35.48 4.42
1761 1964 1.246056 TACGTAGCACTCCCAAGCGT 61.246 55.000 0.00 0.00 35.48 5.07
1762 1965 0.108992 TTACGTAGCACTCCCAAGCG 60.109 55.000 0.00 0.00 35.48 4.68
1763 1966 2.202566 GATTACGTAGCACTCCCAAGC 58.797 52.381 0.00 0.00 0.00 4.01
1764 1967 2.431057 AGGATTACGTAGCACTCCCAAG 59.569 50.000 0.00 0.00 0.00 3.61
1765 1968 2.167693 CAGGATTACGTAGCACTCCCAA 59.832 50.000 0.00 0.00 0.00 4.12
1766 1969 1.754803 CAGGATTACGTAGCACTCCCA 59.245 52.381 0.00 0.00 0.00 4.37
1767 1970 2.029623 TCAGGATTACGTAGCACTCCC 58.970 52.381 0.00 0.00 0.00 4.30
1768 1971 3.643763 CATCAGGATTACGTAGCACTCC 58.356 50.000 0.00 1.73 0.00 3.85
1769 1972 3.053455 GCATCAGGATTACGTAGCACTC 58.947 50.000 0.00 0.00 0.00 3.51
1770 1973 2.695666 AGCATCAGGATTACGTAGCACT 59.304 45.455 0.00 0.00 0.00 4.40
1771 1974 2.797156 CAGCATCAGGATTACGTAGCAC 59.203 50.000 0.00 0.00 0.00 4.40
1772 1975 2.803133 GCAGCATCAGGATTACGTAGCA 60.803 50.000 0.00 0.00 0.00 3.49
1773 1976 1.795286 GCAGCATCAGGATTACGTAGC 59.205 52.381 0.00 0.00 0.00 3.58
1774 1977 3.377346 AGCAGCATCAGGATTACGTAG 57.623 47.619 0.00 0.00 0.00 3.51
1775 1978 3.118775 ACAAGCAGCATCAGGATTACGTA 60.119 43.478 0.00 0.00 0.00 3.57
1776 1979 2.283298 CAAGCAGCATCAGGATTACGT 58.717 47.619 0.00 0.00 0.00 3.57
1777 1980 2.283298 ACAAGCAGCATCAGGATTACG 58.717 47.619 0.00 0.00 0.00 3.18
1778 1981 2.286294 CGACAAGCAGCATCAGGATTAC 59.714 50.000 0.00 0.00 0.00 1.89
1779 1982 2.093500 ACGACAAGCAGCATCAGGATTA 60.093 45.455 0.00 0.00 0.00 1.75
1780 1983 1.339438 ACGACAAGCAGCATCAGGATT 60.339 47.619 0.00 0.00 0.00 3.01
1781 1984 0.251354 ACGACAAGCAGCATCAGGAT 59.749 50.000 0.00 0.00 0.00 3.24
1782 1985 0.894835 TACGACAAGCAGCATCAGGA 59.105 50.000 0.00 0.00 0.00 3.86
1783 1986 1.945387 ATACGACAAGCAGCATCAGG 58.055 50.000 0.00 0.00 0.00 3.86
1784 1987 3.711086 AGTATACGACAAGCAGCATCAG 58.289 45.455 0.00 0.00 0.00 2.90
1785 1988 3.801114 AGTATACGACAAGCAGCATCA 57.199 42.857 0.00 0.00 0.00 3.07
1786 1989 4.607955 TGTAGTATACGACAAGCAGCATC 58.392 43.478 15.43 0.00 46.99 3.91
1787 1990 4.649088 TGTAGTATACGACAAGCAGCAT 57.351 40.909 15.43 0.00 46.99 3.79
1788 1991 4.649088 ATGTAGTATACGACAAGCAGCA 57.351 40.909 20.56 0.00 46.99 4.41
1789 1992 8.636843 GTTAATATGTAGTATACGACAAGCAGC 58.363 37.037 20.56 8.06 46.99 5.25
1790 1993 9.673454 TGTTAATATGTAGTATACGACAAGCAG 57.327 33.333 20.56 0.00 46.99 4.24
1796 1999 9.286946 GCTCCATGTTAATATGTAGTATACGAC 57.713 37.037 9.00 9.00 46.99 4.34
1797 2000 9.016438 TGCTCCATGTTAATATGTAGTATACGA 57.984 33.333 10.82 0.00 46.99 3.43
1798 2001 9.803315 ATGCTCCATGTTAATATGTAGTATACG 57.197 33.333 10.82 0.00 46.99 3.06
1800 2003 9.599866 GCATGCTCCATGTTAATATGTAGTATA 57.400 33.333 11.37 0.00 43.10 1.47
1801 2004 7.554118 GGCATGCTCCATGTTAATATGTAGTAT 59.446 37.037 18.92 6.93 43.10 2.12
1802 2005 6.878923 GGCATGCTCCATGTTAATATGTAGTA 59.121 38.462 18.92 4.97 43.10 1.82
1803 2006 5.707298 GGCATGCTCCATGTTAATATGTAGT 59.293 40.000 18.92 0.00 43.10 2.73
1804 2007 5.942236 AGGCATGCTCCATGTTAATATGTAG 59.058 40.000 18.92 6.01 43.10 2.74
1805 2008 5.706833 CAGGCATGCTCCATGTTAATATGTA 59.293 40.000 18.92 0.00 43.10 2.29
1806 2009 4.521639 CAGGCATGCTCCATGTTAATATGT 59.478 41.667 18.92 0.00 43.10 2.29
1807 2010 4.082408 CCAGGCATGCTCCATGTTAATATG 60.082 45.833 18.92 5.27 43.10 1.78
1808 2011 4.084287 CCAGGCATGCTCCATGTTAATAT 58.916 43.478 18.92 0.00 43.10 1.28
1809 2012 3.138098 TCCAGGCATGCTCCATGTTAATA 59.862 43.478 18.92 0.00 43.10 0.98
1810 2013 2.091720 TCCAGGCATGCTCCATGTTAAT 60.092 45.455 18.92 0.00 43.10 1.40
1811 2014 1.284491 TCCAGGCATGCTCCATGTTAA 59.716 47.619 18.92 0.00 43.10 2.01
1812 2015 0.918258 TCCAGGCATGCTCCATGTTA 59.082 50.000 18.92 0.20 43.10 2.41
1813 2016 0.260816 ATCCAGGCATGCTCCATGTT 59.739 50.000 18.92 0.00 43.10 2.71
1814 2017 0.178998 GATCCAGGCATGCTCCATGT 60.179 55.000 18.92 0.00 43.10 3.21
1815 2018 0.179001 TGATCCAGGCATGCTCCATG 60.179 55.000 18.92 11.19 43.91 3.66
1816 2019 0.110678 CTGATCCAGGCATGCTCCAT 59.889 55.000 18.92 4.68 0.00 3.41
1817 2020 1.276859 ACTGATCCAGGCATGCTCCA 61.277 55.000 18.92 5.93 35.51 3.86
1818 2021 0.106819 AACTGATCCAGGCATGCTCC 60.107 55.000 18.92 1.03 35.51 4.70
1819 2022 2.627515 TAACTGATCCAGGCATGCTC 57.372 50.000 18.92 7.32 35.51 4.26
1820 2023 2.174210 ACATAACTGATCCAGGCATGCT 59.826 45.455 18.92 0.11 35.51 3.79
1821 2024 2.292569 CACATAACTGATCCAGGCATGC 59.707 50.000 9.90 9.90 35.51 4.06
1822 2025 3.812262 TCACATAACTGATCCAGGCATG 58.188 45.455 0.00 0.00 35.51 4.06
1823 2026 4.202441 GTTCACATAACTGATCCAGGCAT 58.798 43.478 0.00 0.00 35.51 4.40
1824 2027 3.008923 TGTTCACATAACTGATCCAGGCA 59.991 43.478 0.00 0.00 35.51 4.75
1825 2028 3.609853 TGTTCACATAACTGATCCAGGC 58.390 45.455 0.00 0.00 35.51 4.85
1826 2029 9.559732 TTTATATGTTCACATAACTGATCCAGG 57.440 33.333 3.78 0.00 41.60 4.45
1849 2052 9.791820 CAATCAATGCTACAATCAAGTCATTTA 57.208 29.630 0.00 0.00 0.00 1.40
1850 2053 7.762615 CCAATCAATGCTACAATCAAGTCATTT 59.237 33.333 0.00 0.00 0.00 2.32
1851 2054 7.262772 CCAATCAATGCTACAATCAAGTCATT 58.737 34.615 0.00 0.00 0.00 2.57
1852 2055 6.682113 GCCAATCAATGCTACAATCAAGTCAT 60.682 38.462 0.00 0.00 0.00 3.06
1853 2056 5.393352 GCCAATCAATGCTACAATCAAGTCA 60.393 40.000 0.00 0.00 0.00 3.41
1854 2057 5.039333 GCCAATCAATGCTACAATCAAGTC 58.961 41.667 0.00 0.00 0.00 3.01
1855 2058 4.142093 GGCCAATCAATGCTACAATCAAGT 60.142 41.667 0.00 0.00 0.00 3.16
1856 2059 4.142116 TGGCCAATCAATGCTACAATCAAG 60.142 41.667 0.61 0.00 0.00 3.02
1857 2060 3.768215 TGGCCAATCAATGCTACAATCAA 59.232 39.130 0.61 0.00 0.00 2.57
1858 2061 3.363627 TGGCCAATCAATGCTACAATCA 58.636 40.909 0.61 0.00 0.00 2.57
1859 2062 4.595762 ATGGCCAATCAATGCTACAATC 57.404 40.909 10.96 0.00 0.00 2.67
1860 2063 4.652421 AGAATGGCCAATCAATGCTACAAT 59.348 37.500 22.75 0.00 0.00 2.71
1861 2064 4.025360 AGAATGGCCAATCAATGCTACAA 58.975 39.130 22.75 0.00 0.00 2.41
1862 2065 3.633525 GAGAATGGCCAATCAATGCTACA 59.366 43.478 22.75 0.00 0.00 2.74
1863 2066 3.887716 AGAGAATGGCCAATCAATGCTAC 59.112 43.478 22.75 5.20 0.00 3.58
1864 2067 4.174704 AGAGAATGGCCAATCAATGCTA 57.825 40.909 22.75 0.00 0.00 3.49
1865 2068 3.028094 AGAGAATGGCCAATCAATGCT 57.972 42.857 22.75 10.92 0.00 3.79
1866 2069 3.118884 ACAAGAGAATGGCCAATCAATGC 60.119 43.478 22.75 8.90 0.00 3.56
1867 2070 4.730949 ACAAGAGAATGGCCAATCAATG 57.269 40.909 22.75 18.33 0.00 2.82
1868 2071 5.750352 AAACAAGAGAATGGCCAATCAAT 57.250 34.783 22.75 7.73 0.00 2.57
1869 2072 6.009589 TCTAAACAAGAGAATGGCCAATCAA 58.990 36.000 22.75 0.00 0.00 2.57
1870 2073 5.569355 TCTAAACAAGAGAATGGCCAATCA 58.431 37.500 22.75 0.00 0.00 2.57
1883 2086 6.231211 GTTCTGTTCATCCCTCTAAACAAGA 58.769 40.000 0.00 0.00 31.75 3.02
1884 2087 5.120830 CGTTCTGTTCATCCCTCTAAACAAG 59.879 44.000 0.00 0.00 31.75 3.16
1885 2088 4.994852 CGTTCTGTTCATCCCTCTAAACAA 59.005 41.667 0.00 0.00 31.75 2.83
1886 2089 4.282449 TCGTTCTGTTCATCCCTCTAAACA 59.718 41.667 0.00 0.00 0.00 2.83
1887 2090 4.626172 GTCGTTCTGTTCATCCCTCTAAAC 59.374 45.833 0.00 0.00 0.00 2.01
1888 2091 4.282449 TGTCGTTCTGTTCATCCCTCTAAA 59.718 41.667 0.00 0.00 0.00 1.85
1889 2092 3.830178 TGTCGTTCTGTTCATCCCTCTAA 59.170 43.478 0.00 0.00 0.00 2.10
1890 2093 3.427573 TGTCGTTCTGTTCATCCCTCTA 58.572 45.455 0.00 0.00 0.00 2.43
1891 2094 2.232452 CTGTCGTTCTGTTCATCCCTCT 59.768 50.000 0.00 0.00 0.00 3.69
1892 2095 2.611518 CTGTCGTTCTGTTCATCCCTC 58.388 52.381 0.00 0.00 0.00 4.30
1893 2096 1.338200 GCTGTCGTTCTGTTCATCCCT 60.338 52.381 0.00 0.00 0.00 4.20
1894 2097 1.079503 GCTGTCGTTCTGTTCATCCC 58.920 55.000 0.00 0.00 0.00 3.85
1895 2098 0.716108 CGCTGTCGTTCTGTTCATCC 59.284 55.000 0.00 0.00 0.00 3.51
1896 2099 0.716108 CCGCTGTCGTTCTGTTCATC 59.284 55.000 0.00 0.00 0.00 2.92
1897 2100 0.033504 ACCGCTGTCGTTCTGTTCAT 59.966 50.000 0.00 0.00 0.00 2.57
1898 2101 0.596600 GACCGCTGTCGTTCTGTTCA 60.597 55.000 0.00 0.00 0.00 3.18
1899 2102 0.318784 AGACCGCTGTCGTTCTGTTC 60.319 55.000 2.37 0.00 46.51 3.18
1900 2103 0.104304 AAGACCGCTGTCGTTCTGTT 59.896 50.000 2.37 0.00 46.51 3.16
1901 2104 0.956633 TAAGACCGCTGTCGTTCTGT 59.043 50.000 1.67 0.00 46.51 3.41
1902 2105 1.337821 GTAAGACCGCTGTCGTTCTG 58.662 55.000 1.67 0.00 46.51 3.02
1903 2106 0.109873 CGTAAGACCGCTGTCGTTCT 60.110 55.000 1.67 0.00 46.51 3.01
1904 2107 2.346884 CGTAAGACCGCTGTCGTTC 58.653 57.895 1.67 0.00 46.51 3.95
1905 2108 4.546637 CGTAAGACCGCTGTCGTT 57.453 55.556 1.67 0.95 46.51 3.85
7138 7623 3.788766 CGAAAAGGGAGCACGCCG 61.789 66.667 0.00 0.00 0.00 6.46
7142 7627 1.880027 ACAATGTCGAAAAGGGAGCAC 59.120 47.619 0.00 0.00 0.00 4.40
7287 7772 1.504359 TAACAACAAGCTTCCCGTCG 58.496 50.000 0.00 0.00 0.00 5.12
7362 7847 2.042297 TGGTGTTTTATGCCTGGGATCA 59.958 45.455 3.14 0.00 0.00 2.92
7385 7870 8.429237 AATATTAATCAGGGTTTGGTGAACAA 57.571 30.769 0.00 0.00 40.13 2.83
7703 8188 3.302092 CGCTCTTCACGTCAAAGATATGC 60.302 47.826 9.67 9.11 32.56 3.14
7787 8272 1.666011 GAAGAGGGCGTCTGTGTCA 59.334 57.895 10.92 0.00 34.84 3.58
7808 8293 0.180406 ATGTTCTATCCCACACGCCC 59.820 55.000 0.00 0.00 0.00 6.13
7990 8475 6.839124 ATTTGAATTATGCAGGTCAACTCA 57.161 33.333 0.00 0.00 30.00 3.41
8139 8624 0.317854 CACAGCGTCACTCGACTTGA 60.318 55.000 0.00 0.00 42.86 3.02
8140 8625 0.317854 TCACAGCGTCACTCGACTTG 60.318 55.000 0.00 0.00 42.86 3.16
8141 8626 0.039978 CTCACAGCGTCACTCGACTT 60.040 55.000 0.00 0.00 42.86 3.01
8142 8627 1.576920 CTCACAGCGTCACTCGACT 59.423 57.895 0.00 0.00 42.86 4.18
8143 8628 2.083522 GCTCACAGCGTCACTCGAC 61.084 63.158 0.00 0.00 42.86 4.20
8144 8629 1.866853 ATGCTCACAGCGTCACTCGA 61.867 55.000 0.00 0.00 46.26 4.04
8145 8630 1.445066 ATGCTCACAGCGTCACTCG 60.445 57.895 0.00 0.00 46.26 4.18
8146 8631 4.586618 ATGCTCACAGCGTCACTC 57.413 55.556 0.00 0.00 46.26 3.51
8151 8636 0.319728 AGTCAAGATGCTCACAGCGT 59.680 50.000 0.00 0.00 46.26 5.07
8152 8637 0.997932 GAGTCAAGATGCTCACAGCG 59.002 55.000 0.00 0.00 46.26 5.18
8153 8638 2.090400 TGAGTCAAGATGCTCACAGC 57.910 50.000 0.00 0.00 42.82 4.40
8154 8639 3.597255 ACATGAGTCAAGATGCTCACAG 58.403 45.455 0.00 0.00 43.45 3.66
8155 8640 3.593096 GACATGAGTCAAGATGCTCACA 58.407 45.455 0.00 0.00 43.45 3.58
8156 8641 2.602211 CGACATGAGTCAAGATGCTCAC 59.398 50.000 0.00 0.00 45.23 3.51
8157 8642 2.493278 TCGACATGAGTCAAGATGCTCA 59.507 45.455 0.00 0.00 45.23 4.26
8158 8643 3.114809 CTCGACATGAGTCAAGATGCTC 58.885 50.000 0.00 0.00 45.23 4.26
8159 8644 3.162202 CTCGACATGAGTCAAGATGCT 57.838 47.619 0.00 0.00 45.23 3.79
8173 8658 0.594028 GTTCACAGCGTCACTCGACA 60.594 55.000 0.00 0.00 42.74 4.35
8205 8690 3.930336 TCATCTCACAAGTCACACCATC 58.070 45.455 0.00 0.00 0.00 3.51
8206 8691 4.067896 GTTCATCTCACAAGTCACACCAT 58.932 43.478 0.00 0.00 0.00 3.55
8207 8692 3.466836 GTTCATCTCACAAGTCACACCA 58.533 45.455 0.00 0.00 0.00 4.17
8208 8693 2.476619 CGTTCATCTCACAAGTCACACC 59.523 50.000 0.00 0.00 0.00 4.16
8209 8694 2.476619 CCGTTCATCTCACAAGTCACAC 59.523 50.000 0.00 0.00 0.00 3.82
8210 8695 2.364002 TCCGTTCATCTCACAAGTCACA 59.636 45.455 0.00 0.00 0.00 3.58
8211 8696 3.026630 TCCGTTCATCTCACAAGTCAC 57.973 47.619 0.00 0.00 0.00 3.67
8212 8697 3.588955 CATCCGTTCATCTCACAAGTCA 58.411 45.455 0.00 0.00 0.00 3.41
8213 8698 2.932614 CCATCCGTTCATCTCACAAGTC 59.067 50.000 0.00 0.00 0.00 3.01
8214 8699 2.303022 ACCATCCGTTCATCTCACAAGT 59.697 45.455 0.00 0.00 0.00 3.16
8215 8700 2.674852 CACCATCCGTTCATCTCACAAG 59.325 50.000 0.00 0.00 0.00 3.16
8216 8701 2.038426 ACACCATCCGTTCATCTCACAA 59.962 45.455 0.00 0.00 0.00 3.33
8217 8702 1.623311 ACACCATCCGTTCATCTCACA 59.377 47.619 0.00 0.00 0.00 3.58
8218 8703 2.002586 CACACCATCCGTTCATCTCAC 58.997 52.381 0.00 0.00 0.00 3.51
8219 8704 1.899142 TCACACCATCCGTTCATCTCA 59.101 47.619 0.00 0.00 0.00 3.27
8220 8705 2.093973 AGTCACACCATCCGTTCATCTC 60.094 50.000 0.00 0.00 0.00 2.75
8221 8706 1.902508 AGTCACACCATCCGTTCATCT 59.097 47.619 0.00 0.00 0.00 2.90
8222 8707 2.386661 AGTCACACCATCCGTTCATC 57.613 50.000 0.00 0.00 0.00 2.92
8223 8708 2.224523 ACAAGTCACACCATCCGTTCAT 60.225 45.455 0.00 0.00 0.00 2.57
8224 8709 1.140052 ACAAGTCACACCATCCGTTCA 59.860 47.619 0.00 0.00 0.00 3.18
8225 8710 1.531149 CACAAGTCACACCATCCGTTC 59.469 52.381 0.00 0.00 0.00 3.95
8226 8711 1.140052 TCACAAGTCACACCATCCGTT 59.860 47.619 0.00 0.00 0.00 4.44
8227 8712 0.756294 TCACAAGTCACACCATCCGT 59.244 50.000 0.00 0.00 0.00 4.69
8228 8713 1.000843 TCTCACAAGTCACACCATCCG 59.999 52.381 0.00 0.00 0.00 4.18
8229 8714 2.839486 TCTCACAAGTCACACCATCC 57.161 50.000 0.00 0.00 0.00 3.51
8234 8719 2.476619 CCGTTCATCTCACAAGTCACAC 59.523 50.000 0.00 0.00 0.00 3.82
8255 8740 3.512516 GGCAGGTGAAGCGGATGC 61.513 66.667 0.00 0.00 43.24 3.91
8265 8750 1.098050 GGCAGAACATAAGGCAGGTG 58.902 55.000 0.00 0.00 0.00 4.00
8268 8753 2.119801 ACAGGCAGAACATAAGGCAG 57.880 50.000 0.00 0.00 0.00 4.85
8272 8757 8.677300 ACATACATTTAACAGGCAGAACATAAG 58.323 33.333 0.00 0.00 0.00 1.73
8274 8759 9.325198 CTACATACATTTAACAGGCAGAACATA 57.675 33.333 0.00 0.00 0.00 2.29
8283 8768 7.273381 GCAAGCAAACTACATACATTTAACAGG 59.727 37.037 0.00 0.00 0.00 4.00
8291 8776 4.335416 ACCAGCAAGCAAACTACATACAT 58.665 39.130 0.00 0.00 0.00 2.29
8300 8785 2.555757 AGATTCTGACCAGCAAGCAAAC 59.444 45.455 0.00 0.00 0.00 2.93
8303 8788 1.072806 ACAGATTCTGACCAGCAAGCA 59.927 47.619 20.33 0.00 35.18 3.91
8304 8789 1.467734 CACAGATTCTGACCAGCAAGC 59.532 52.381 20.33 0.00 35.18 4.01
8309 8794 2.074576 CACAGCACAGATTCTGACCAG 58.925 52.381 20.33 9.29 35.18 4.00
8327 8812 1.746517 CCTCCGCCCTATGTACCAC 59.253 63.158 0.00 0.00 0.00 4.16
8340 8825 2.895424 AAACTGACAGGGGCCTCCG 61.895 63.158 0.00 0.00 41.52 4.63
8347 8832 2.224621 ACATCCACTCAAACTGACAGGG 60.225 50.000 7.51 0.00 0.00 4.45
8353 8838 3.131709 ACCAGACATCCACTCAAACTG 57.868 47.619 0.00 0.00 0.00 3.16
8366 8851 0.033601 AAGCACCACCAAACCAGACA 60.034 50.000 0.00 0.00 0.00 3.41
8401 8886 1.955778 CCAAGACACAAAGCCATGTCA 59.044 47.619 7.10 0.00 46.34 3.58
8422 8907 4.853668 AGTCGAAACTAGAGCCGGAGGT 62.854 54.545 5.05 0.00 42.42 3.85
8427 8912 0.802607 GCCAGTCGAAACTAGAGCCG 60.803 60.000 0.00 0.00 33.25 5.52
8439 8924 1.517257 GACCAGTCATCGCCAGTCG 60.517 63.158 0.00 0.00 40.15 4.18
8440 8925 1.517257 CGACCAGTCATCGCCAGTC 60.517 63.158 0.00 0.00 31.96 3.51
8441 8926 1.323271 ATCGACCAGTCATCGCCAGT 61.323 55.000 0.00 0.00 39.46 4.00
8442 8927 0.596083 GATCGACCAGTCATCGCCAG 60.596 60.000 0.00 0.00 39.46 4.85
8443 8928 1.037579 AGATCGACCAGTCATCGCCA 61.038 55.000 0.00 0.00 39.46 5.69
8444 8929 0.318275 GAGATCGACCAGTCATCGCC 60.318 60.000 0.00 0.00 39.46 5.54
8445 8930 0.658829 CGAGATCGACCAGTCATCGC 60.659 60.000 0.00 2.30 43.02 4.58
8446 8931 0.040870 CCGAGATCGACCAGTCATCG 60.041 60.000 3.31 2.41 43.02 3.84
8447 8932 0.318275 GCCGAGATCGACCAGTCATC 60.318 60.000 3.31 1.28 43.02 2.92
8448 8933 1.736586 GCCGAGATCGACCAGTCAT 59.263 57.895 3.31 0.00 43.02 3.06
8499 8984 5.473162 CACAAAATCTAACCACATGGAGTCA 59.527 40.000 4.53 0.00 38.94 3.41
8505 8990 4.789012 AGGCACAAAATCTAACCACATG 57.211 40.909 0.00 0.00 0.00 3.21
8508 8993 4.762251 AGAGAAGGCACAAAATCTAACCAC 59.238 41.667 0.00 0.00 0.00 4.16
8515 9000 4.579869 TGTCCTAGAGAAGGCACAAAATC 58.420 43.478 0.00 0.00 46.10 2.17
8516 9001 4.640771 TGTCCTAGAGAAGGCACAAAAT 57.359 40.909 0.00 0.00 46.10 1.82
8518 9003 3.840666 AGATGTCCTAGAGAAGGCACAAA 59.159 43.478 0.00 0.00 46.10 2.83
8519 9004 3.445008 AGATGTCCTAGAGAAGGCACAA 58.555 45.455 0.00 0.00 46.10 3.33
8520 9005 3.107402 AGATGTCCTAGAGAAGGCACA 57.893 47.619 0.00 0.00 46.10 4.57
8521 9006 3.005367 GCTAGATGTCCTAGAGAAGGCAC 59.995 52.174 0.00 0.00 46.17 5.01
8523 9008 2.227865 CGCTAGATGTCCTAGAGAAGGC 59.772 54.545 0.00 0.00 46.17 4.35
8536 9024 2.860735 CCCGAGAAGAAAACGCTAGATG 59.139 50.000 0.00 0.00 0.00 2.90
8537 9025 2.159085 CCCCGAGAAGAAAACGCTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
8552 9040 0.962356 AAGCAAATCACTGCCCCGAG 60.962 55.000 0.00 0.00 43.73 4.63
8553 9041 1.074775 AAGCAAATCACTGCCCCGA 59.925 52.632 0.00 0.00 43.73 5.14
8554 9042 1.213537 CAAGCAAATCACTGCCCCG 59.786 57.895 0.00 0.00 43.73 5.73
8555 9043 1.593265 CCAAGCAAATCACTGCCCC 59.407 57.895 0.00 0.00 43.73 5.80
8562 9050 4.505808 CAACCATAATGCCAAGCAAATCA 58.494 39.130 0.00 0.00 43.62 2.57
8564 9052 3.272581 GCAACCATAATGCCAAGCAAAT 58.727 40.909 0.00 0.00 43.62 2.32
8578 9066 5.452255 AGATCATAAGACATTGGCAACCAT 58.548 37.500 0.00 0.00 31.53 3.55
8583 9071 7.966812 AGTATGTAGATCATAAGACATTGGCA 58.033 34.615 0.00 0.00 40.21 4.92
8584 9072 8.839310 AAGTATGTAGATCATAAGACATTGGC 57.161 34.615 0.00 0.00 40.21 4.52
8595 9084 6.490381 TCGTGGCTAGAAAGTATGTAGATCAT 59.510 38.462 0.00 0.00 40.25 2.45
8619 11159 5.224821 ACCCAGTAACTTGTAGAAAGGTC 57.775 43.478 0.00 0.00 0.00 3.85
8620 11160 5.641789 AACCCAGTAACTTGTAGAAAGGT 57.358 39.130 0.00 0.00 0.00 3.50
8636 11176 7.029563 GCATGAACTTATTGAAACTAACCCAG 58.970 38.462 0.00 0.00 0.00 4.45
8657 11197 2.202987 GACCTCCGCCTCAGCATG 60.203 66.667 0.00 0.00 39.83 4.06
8666 11206 3.760035 TCGCCTTCAGACCTCCGC 61.760 66.667 0.00 0.00 0.00 5.54
8675 11215 0.459899 AGCATACGATGTCGCCTTCA 59.540 50.000 1.77 0.00 44.43 3.02
8702 11242 2.282555 CCTTCTACATGCATCGTTGACG 59.717 50.000 0.00 3.65 41.45 4.35
8704 11244 3.885724 TCCTTCTACATGCATCGTTGA 57.114 42.857 0.00 2.89 0.00 3.18
8708 11248 4.505922 GTCTTCTTCCTTCTACATGCATCG 59.494 45.833 0.00 0.00 0.00 3.84
8731 11271 5.163437 ACTCTATAAAGGGTGCCGAAGTAAG 60.163 44.000 0.00 0.00 34.13 2.34
8732 11272 4.713321 ACTCTATAAAGGGTGCCGAAGTAA 59.287 41.667 0.00 0.00 34.13 2.24
8733 11273 4.098960 CACTCTATAAAGGGTGCCGAAGTA 59.901 45.833 0.00 0.00 46.93 2.24
8734 11274 3.105283 ACTCTATAAAGGGTGCCGAAGT 58.895 45.455 0.00 0.00 34.13 3.01
8735 11275 3.458189 CACTCTATAAAGGGTGCCGAAG 58.542 50.000 0.00 0.00 46.93 3.79
8750 11290 9.778741 AAATGTAAGATGTTTTCTGACACTCTA 57.221 29.630 0.00 0.00 46.63 2.43
8751 11291 8.682936 AAATGTAAGATGTTTTCTGACACTCT 57.317 30.769 0.00 0.00 46.63 3.24
8752 11292 9.173939 CAAAATGTAAGATGTTTTCTGACACTC 57.826 33.333 0.00 0.00 46.63 3.51
8796 11336 9.758651 AAAACGCCTTTACAGAAATTAAAAGAT 57.241 25.926 0.00 0.00 31.96 2.40
8802 11342 8.928270 TTTCAAAAACGCCTTTACAGAAATTA 57.072 26.923 0.00 0.00 0.00 1.40
8811 11351 4.885325 AGAGACCTTTCAAAAACGCCTTTA 59.115 37.500 0.00 0.00 0.00 1.85
8816 11356 5.695363 AGTAGTAGAGACCTTTCAAAAACGC 59.305 40.000 0.00 0.00 0.00 4.84
8824 11364 9.968870 CCATGTATTAAGTAGTAGAGACCTTTC 57.031 37.037 0.00 0.00 0.00 2.62
8828 11368 8.694581 AGACCATGTATTAAGTAGTAGAGACC 57.305 38.462 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.