Multiple sequence alignment - TraesCS6D01G264700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G264700 chr6D 100.000 2746 0 0 1 2746 373419506 373416761 0.000000e+00 5072.0
1 TraesCS6D01G264700 chr6D 85.965 342 40 7 904 1243 372951068 372950733 2.600000e-95 359.0
2 TraesCS6D01G264700 chr6D 90.435 115 8 2 2318 2432 373409138 373409027 6.130000e-32 148.0
3 TraesCS6D01G264700 chr6B 84.165 1263 75 46 560 1755 561146834 561145630 0.000000e+00 1109.0
4 TraesCS6D01G264700 chr6B 83.071 827 101 26 904 1711 558733669 558734475 0.000000e+00 715.0
5 TraesCS6D01G264700 chr6B 82.950 827 102 26 904 1711 558816264 558817070 0.000000e+00 710.0
6 TraesCS6D01G264700 chr6B 83.550 462 59 9 1290 1751 561005363 561004919 1.520000e-112 416.0
7 TraesCS6D01G264700 chr6B 88.591 298 34 0 939 1236 561043202 561043499 2.010000e-96 363.0
8 TraesCS6D01G264700 chr6B 90.196 255 12 6 1984 2229 561008944 561009194 1.230000e-83 320.0
9 TraesCS6D01G264700 chr6B 88.182 220 12 7 1773 1982 561008549 561008764 1.630000e-62 250.0
10 TraesCS6D01G264700 chr6B 94.340 53 2 1 2328 2380 558926203 558926254 2.270000e-11 80.5
11 TraesCS6D01G264700 chr6B 100.000 32 0 0 2440 2471 463235019 463235050 2.950000e-05 60.2
12 TraesCS6D01G264700 chr6A 90.578 658 35 6 1370 2000 515658080 515657423 0.000000e+00 846.0
13 TraesCS6D01G264700 chr6A 82.227 844 101 33 904 1729 515035006 515034194 0.000000e+00 682.0
14 TraesCS6D01G264700 chr6A 85.887 496 36 12 473 949 515666200 515665720 5.280000e-137 497.0
15 TraesCS6D01G264700 chr6A 94.631 298 16 0 996 1293 515665721 515665424 1.930000e-126 462.0
16 TraesCS6D01G264700 chr6A 88.215 297 34 1 940 1236 515644142 515643847 1.210000e-93 353.0
17 TraesCS6D01G264700 chr6A 81.316 380 36 8 99 473 515668600 515668251 2.690000e-70 276.0
18 TraesCS6D01G264700 chr6A 88.696 115 10 2 2318 2432 515650103 515649992 1.330000e-28 137.0
19 TraesCS6D01G264700 chr6A 93.939 66 4 0 32 97 515647085 515647020 1.740000e-17 100.0
20 TraesCS6D01G264700 chr6A 95.918 49 2 0 29 77 515668645 515668597 2.270000e-11 80.5
21 TraesCS6D01G264700 chr6A 80.952 105 9 5 2328 2432 515032234 515032141 3.790000e-09 73.1
22 TraesCS6D01G264700 chr6A 100.000 32 0 0 2440 2471 287307362 287307331 2.950000e-05 60.2
23 TraesCS6D01G264700 chr2B 95.699 279 7 1 2471 2744 793982638 793982916 6.980000e-121 444.0
24 TraesCS6D01G264700 chr4D 94.928 276 9 1 2474 2744 12187563 12187288 7.030000e-116 427.0
25 TraesCS6D01G264700 chrUn 89.597 298 25 5 992 1287 459912338 459912631 9.290000e-100 374.0
26 TraesCS6D01G264700 chr1B 93.200 250 8 2 2495 2744 52151534 52151774 2.600000e-95 359.0
27 TraesCS6D01G264700 chr1B 90.698 43 1 3 2433 2474 391850859 391850899 1.000000e-03 54.7
28 TraesCS6D01G264700 chr7A 96.535 202 7 0 2543 2744 547971888 547971687 4.380000e-88 335.0
29 TraesCS6D01G264700 chr5D 100.000 32 0 0 2440 2471 22588616 22588647 2.950000e-05 60.2
30 TraesCS6D01G264700 chr5D 89.130 46 3 2 2426 2471 253592351 253592308 3.820000e-04 56.5
31 TraesCS6D01G264700 chr5A 100.000 32 0 0 2440 2471 255342093 255342124 2.950000e-05 60.2
32 TraesCS6D01G264700 chr3D 100.000 32 0 0 2440 2471 544592391 544592360 2.950000e-05 60.2
33 TraesCS6D01G264700 chr3D 100.000 32 0 0 2440 2471 589021086 589021117 2.950000e-05 60.2
34 TraesCS6D01G264700 chr3B 100.000 32 0 0 2440 2471 550466940 550466971 2.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G264700 chr6D 373416761 373419506 2745 True 5072.000 5072 100.0000 1 2746 1 chr6D.!!$R3 2745
1 TraesCS6D01G264700 chr6B 561145630 561146834 1204 True 1109.000 1109 84.1650 560 1755 1 chr6B.!!$R2 1195
2 TraesCS6D01G264700 chr6B 558733669 558734475 806 False 715.000 715 83.0710 904 1711 1 chr6B.!!$F2 807
3 TraesCS6D01G264700 chr6B 558816264 558817070 806 False 710.000 710 82.9500 904 1711 1 chr6B.!!$F3 807
4 TraesCS6D01G264700 chr6B 561008549 561009194 645 False 285.000 320 89.1890 1773 2229 2 chr6B.!!$F6 456
5 TraesCS6D01G264700 chr6A 515657423 515658080 657 True 846.000 846 90.5780 1370 2000 1 chr6A.!!$R2 630
6 TraesCS6D01G264700 chr6A 515032141 515035006 2865 True 377.550 682 81.5895 904 2432 2 chr6A.!!$R3 1528
7 TraesCS6D01G264700 chr6A 515665424 515668645 3221 True 328.875 497 89.4380 29 1293 4 chr6A.!!$R5 1264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.100861 GACCTCCGGCTCTAGTTTCG 59.899 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 6008 0.109919 GCTTTTCCACCGCTTTACCG 60.11 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.138722 GTCGAGTGACGCTGTGAG 57.861 61.111 0.00 0.00 42.26 3.51
29 30 2.083522 GTCGAGTGACGCTGTGAGC 61.084 63.158 0.00 0.00 42.26 4.26
30 31 2.050077 CGAGTGACGCTGTGAGCA 60.050 61.111 0.00 0.00 42.58 4.26
31 32 1.445066 CGAGTGACGCTGTGAGCAT 60.445 57.895 0.00 0.00 42.58 3.79
32 33 1.409227 CGAGTGACGCTGTGAGCATC 61.409 60.000 0.00 0.00 42.58 3.91
41 42 2.630158 GCTGTGAGCATCTTGACTCAT 58.370 47.619 0.00 0.00 44.29 2.90
73 74 2.472886 GCTGTGAACATTGTCGTCGATG 60.473 50.000 8.16 8.16 40.33 3.84
74 75 2.986479 CTGTGAACATTGTCGTCGATGA 59.014 45.455 15.57 2.39 38.46 2.92
75 76 3.584834 TGTGAACATTGTCGTCGATGAT 58.415 40.909 11.16 4.76 38.46 2.45
76 77 3.367630 TGTGAACATTGTCGTCGATGATG 59.632 43.478 11.16 7.86 38.46 3.07
77 78 2.929398 TGAACATTGTCGTCGATGATGG 59.071 45.455 11.16 3.70 38.46 3.51
78 79 2.672961 ACATTGTCGTCGATGATGGT 57.327 45.000 11.16 4.32 38.46 3.55
79 80 2.270923 ACATTGTCGTCGATGATGGTG 58.729 47.619 11.16 11.66 38.46 4.17
80 81 2.270923 CATTGTCGTCGATGATGGTGT 58.729 47.619 11.16 0.00 37.58 4.16
81 82 1.708822 TTGTCGTCGATGATGGTGTG 58.291 50.000 11.16 0.00 0.00 3.82
82 83 0.885196 TGTCGTCGATGATGGTGTGA 59.115 50.000 11.16 0.00 0.00 3.58
83 84 1.269166 GTCGTCGATGATGGTGTGAC 58.731 55.000 11.16 0.00 0.00 3.67
84 85 1.135373 GTCGTCGATGATGGTGTGACT 60.135 52.381 11.16 0.00 0.00 3.41
85 86 1.544246 TCGTCGATGATGGTGTGACTT 59.456 47.619 2.39 0.00 0.00 3.01
86 87 1.655597 CGTCGATGATGGTGTGACTTG 59.344 52.381 0.00 0.00 0.00 3.16
87 88 2.688507 GTCGATGATGGTGTGACTTGT 58.311 47.619 0.00 0.00 0.00 3.16
88 89 2.413112 GTCGATGATGGTGTGACTTGTG 59.587 50.000 0.00 0.00 0.00 3.33
89 90 2.298729 TCGATGATGGTGTGACTTGTGA 59.701 45.455 0.00 0.00 0.00 3.58
90 91 2.669924 CGATGATGGTGTGACTTGTGAG 59.330 50.000 0.00 0.00 0.00 3.51
91 92 3.614870 CGATGATGGTGTGACTTGTGAGA 60.615 47.826 0.00 0.00 0.00 3.27
92 93 4.511527 GATGATGGTGTGACTTGTGAGAT 58.488 43.478 0.00 0.00 0.00 2.75
93 94 3.667360 TGATGGTGTGACTTGTGAGATG 58.333 45.455 0.00 0.00 0.00 2.90
94 95 3.324556 TGATGGTGTGACTTGTGAGATGA 59.675 43.478 0.00 0.00 0.00 2.92
95 96 3.836365 TGGTGTGACTTGTGAGATGAA 57.164 42.857 0.00 0.00 0.00 2.57
96 97 3.466836 TGGTGTGACTTGTGAGATGAAC 58.533 45.455 0.00 0.00 0.00 3.18
97 98 2.476619 GGTGTGACTTGTGAGATGAACG 59.523 50.000 0.00 0.00 0.00 3.95
102 103 2.932614 GACTTGTGAGATGAACGGATGG 59.067 50.000 0.00 0.00 0.00 3.51
113 114 1.531149 GAACGGATGGTGTGACTTGTG 59.469 52.381 0.00 0.00 0.00 3.33
114 115 0.756294 ACGGATGGTGTGACTTGTGA 59.244 50.000 0.00 0.00 0.00 3.58
123 124 2.476619 GTGTGACTTGTGAGATGAACGG 59.523 50.000 0.00 0.00 0.00 4.44
140 141 3.512516 GCATCCGCTTCACCTGCC 61.513 66.667 0.00 0.00 34.30 4.85
142 143 1.377725 CATCCGCTTCACCTGCCTT 60.378 57.895 0.00 0.00 0.00 4.35
151 152 2.113860 TCACCTGCCTTATGTTCTGC 57.886 50.000 0.00 0.00 0.00 4.26
159 160 4.402829 TGCCTTATGTTCTGCCTGTTAAA 58.597 39.130 0.00 0.00 0.00 1.52
168 169 7.609760 TGTTCTGCCTGTTAAATGTATGTAG 57.390 36.000 0.00 0.00 0.00 2.74
171 172 8.512138 GTTCTGCCTGTTAAATGTATGTAGTTT 58.488 33.333 0.00 0.00 0.00 2.66
172 173 8.039603 TCTGCCTGTTAAATGTATGTAGTTTG 57.960 34.615 0.00 0.00 0.00 2.93
177 178 7.273381 CCTGTTAAATGTATGTAGTTTGCTTGC 59.727 37.037 0.00 0.00 0.00 4.01
195 196 1.085091 GCTGGTCAGAATCTGTGCTG 58.915 55.000 10.36 1.59 32.61 4.41
200 201 2.028112 GGTCAGAATCTGTGCTGTGGTA 60.028 50.000 10.36 0.00 33.90 3.25
201 202 2.996621 GTCAGAATCTGTGCTGTGGTAC 59.003 50.000 10.36 0.00 33.90 3.34
202 203 2.632512 TCAGAATCTGTGCTGTGGTACA 59.367 45.455 10.36 0.00 36.66 2.90
203 204 3.261643 TCAGAATCTGTGCTGTGGTACAT 59.738 43.478 10.36 0.00 37.43 2.29
204 205 4.466015 TCAGAATCTGTGCTGTGGTACATA 59.534 41.667 10.36 0.00 37.43 2.29
205 206 5.394553 TCAGAATCTGTGCTGTGGTACATAG 60.395 44.000 10.36 0.00 40.44 2.23
206 207 8.302595 TCAGAATCTGTGCTGTGGTACATAGG 62.303 46.154 10.36 0.00 39.13 2.57
234 235 1.352352 CCCCTGTCAGTTTGAGTGGAT 59.648 52.381 0.00 0.00 0.00 3.41
269 270 0.249489 GCTTGTCATACGGAGCGGAT 60.249 55.000 0.00 0.00 0.00 4.18
282 283 0.322816 AGCGGATGACATGGCTTTGT 60.323 50.000 0.00 0.00 30.04 2.83
283 284 0.179156 GCGGATGACATGGCTTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
284 285 1.167851 CGGATGACATGGCTTTGTGT 58.832 50.000 0.00 0.00 0.00 3.72
285 286 1.131126 CGGATGACATGGCTTTGTGTC 59.869 52.381 0.00 0.00 43.81 3.67
286 287 2.440409 GGATGACATGGCTTTGTGTCT 58.560 47.619 0.00 0.00 43.87 3.41
287 288 2.821969 GGATGACATGGCTTTGTGTCTT 59.178 45.455 0.00 1.10 43.87 3.01
288 289 3.366679 GGATGACATGGCTTTGTGTCTTG 60.367 47.826 0.00 0.00 43.87 3.02
289 290 1.955778 TGACATGGCTTTGTGTCTTGG 59.044 47.619 0.00 0.00 43.87 3.61
290 291 2.229792 GACATGGCTTTGTGTCTTGGA 58.770 47.619 0.00 0.00 41.10 3.53
295 296 1.239347 GCTTTGTGTCTTGGACCTCC 58.761 55.000 0.00 0.00 0.00 4.30
307 308 0.460722 GGACCTCCGGCTCTAGTTTC 59.539 60.000 0.00 0.00 0.00 2.78
308 309 0.100861 GACCTCCGGCTCTAGTTTCG 59.899 60.000 0.00 0.00 0.00 3.46
309 310 0.323178 ACCTCCGGCTCTAGTTTCGA 60.323 55.000 0.00 0.00 0.00 3.71
310 311 0.100861 CCTCCGGCTCTAGTTTCGAC 59.899 60.000 0.00 0.00 0.00 4.20
311 312 1.096416 CTCCGGCTCTAGTTTCGACT 58.904 55.000 0.00 0.00 0.00 4.18
312 313 0.809385 TCCGGCTCTAGTTTCGACTG 59.191 55.000 0.00 0.00 0.00 3.51
313 314 0.179134 CCGGCTCTAGTTTCGACTGG 60.179 60.000 0.00 0.00 0.00 4.00
314 315 0.802607 CGGCTCTAGTTTCGACTGGC 60.803 60.000 0.00 0.00 0.00 4.85
315 316 0.802607 GGCTCTAGTTTCGACTGGCG 60.803 60.000 0.00 0.00 42.69 5.69
367 368 2.088423 TGTGCGAGGTTTGTGTTTCTT 58.912 42.857 0.00 0.00 0.00 2.52
373 374 3.002348 CGAGGTTTGTGTTTCTTGACTCC 59.998 47.826 0.00 0.00 0.00 3.85
376 377 4.339247 AGGTTTGTGTTTCTTGACTCCATG 59.661 41.667 0.00 0.00 0.00 3.66
383 384 5.049405 GTGTTTCTTGACTCCATGTGGTTAG 60.049 44.000 0.00 0.00 36.34 2.34
384 385 5.163248 TGTTTCTTGACTCCATGTGGTTAGA 60.163 40.000 0.00 0.00 36.34 2.10
386 387 5.762179 TCTTGACTCCATGTGGTTAGATT 57.238 39.130 0.00 0.00 36.34 2.40
387 388 6.126863 TCTTGACTCCATGTGGTTAGATTT 57.873 37.500 0.00 0.00 36.34 2.17
388 389 6.542821 TCTTGACTCCATGTGGTTAGATTTT 58.457 36.000 0.00 0.00 36.34 1.82
389 390 6.430925 TCTTGACTCCATGTGGTTAGATTTTG 59.569 38.462 0.00 0.00 36.34 2.44
391 392 5.473162 TGACTCCATGTGGTTAGATTTTGTG 59.527 40.000 0.00 0.00 36.34 3.33
420 424 5.892568 TCTAGGACATCTAGCGTTTTCTTC 58.107 41.667 0.00 0.00 43.93 2.87
421 425 4.810191 AGGACATCTAGCGTTTTCTTCT 57.190 40.909 0.00 0.00 0.00 2.85
422 426 4.749976 AGGACATCTAGCGTTTTCTTCTC 58.250 43.478 0.00 0.00 0.00 2.87
423 427 3.548268 GGACATCTAGCGTTTTCTTCTCG 59.452 47.826 0.00 0.00 0.00 4.04
430 434 0.602905 CGTTTTCTTCTCGGGGCAGT 60.603 55.000 0.00 0.00 0.00 4.40
432 436 0.762418 TTTTCTTCTCGGGGCAGTGA 59.238 50.000 0.00 0.00 0.00 3.41
440 444 1.213537 CGGGGCAGTGATTTGCTTG 59.786 57.895 0.00 0.00 43.57 4.01
446 450 2.094078 GGCAGTGATTTGCTTGGCATTA 60.094 45.455 0.00 0.00 43.57 1.90
451 455 4.223477 AGTGATTTGCTTGGCATTATGGTT 59.777 37.500 0.00 0.00 38.76 3.67
452 456 4.330620 GTGATTTGCTTGGCATTATGGTTG 59.669 41.667 0.00 0.00 38.76 3.77
453 457 2.383368 TTGCTTGGCATTATGGTTGC 57.617 45.000 0.00 0.00 38.76 4.17
463 468 5.261209 GCATTATGGTTGCCAATGTCTTA 57.739 39.130 0.00 0.00 36.95 2.10
487 2543 6.073327 TGATCTACATACTTTCTAGCCACG 57.927 41.667 0.00 0.00 0.00 4.94
488 2544 5.826208 TGATCTACATACTTTCTAGCCACGA 59.174 40.000 0.00 0.00 0.00 4.35
504 2560 3.431233 GCCACGACCTTTCTACAAGTTAC 59.569 47.826 0.00 0.00 0.00 2.50
508 2564 4.243270 CGACCTTTCTACAAGTTACTGGG 58.757 47.826 0.00 0.00 0.00 4.45
511 2567 6.517194 CGACCTTTCTACAAGTTACTGGGTTA 60.517 42.308 0.00 0.00 0.00 2.85
512 2568 6.766429 ACCTTTCTACAAGTTACTGGGTTAG 58.234 40.000 0.00 0.00 0.00 2.34
513 2569 6.328410 ACCTTTCTACAAGTTACTGGGTTAGT 59.672 38.462 0.00 0.00 43.56 2.24
514 2570 7.147426 ACCTTTCTACAAGTTACTGGGTTAGTT 60.147 37.037 0.00 0.00 40.89 2.24
525 2581 9.281371 AGTTACTGGGTTAGTTTCAATAAGTTC 57.719 33.333 0.00 0.00 40.89 3.01
534 2590 6.506500 AGTTTCAATAAGTTCATGCTGAGG 57.493 37.500 0.00 0.00 0.00 3.86
543 2599 2.364842 ATGCTGAGGCGGAGGTCT 60.365 61.111 0.00 0.00 42.25 3.85
550 2606 4.821589 GGCGGAGGTCTGAAGGCG 62.822 72.222 0.00 0.00 0.00 5.52
555 2611 0.179097 GGAGGTCTGAAGGCGACATC 60.179 60.000 0.00 0.00 40.40 3.06
558 2614 0.454600 GGTCTGAAGGCGACATCGTA 59.545 55.000 2.85 0.00 42.22 3.43
603 2659 6.398918 TGCATGTAGAAGGAAGAAGACTTAC 58.601 40.000 0.00 0.00 37.23 2.34
619 2675 4.713321 AGACTTACTTCGGCACCCTTTATA 59.287 41.667 0.00 0.00 0.00 0.98
620 2676 5.019785 ACTTACTTCGGCACCCTTTATAG 57.980 43.478 0.00 0.00 0.00 1.31
634 2690 6.934645 CACCCTTTATAGAGTGTCAGAAAACA 59.065 38.462 0.00 0.00 0.00 2.83
692 2748 9.631639 CTTTTAATTTCTGTAAAGGCGTTTTTG 57.368 29.630 10.01 1.50 0.00 2.44
701 2759 3.710326 AAGGCGTTTTTGAAAGGTCTC 57.290 42.857 1.38 0.00 0.00 3.36
749 2809 6.040842 TGACCTTCTGAAAAAGAAAATGGAGG 59.959 38.462 0.00 0.00 44.38 4.30
751 2811 6.040955 ACCTTCTGAAAAAGAAAATGGAGGTC 59.959 38.462 0.00 0.00 44.38 3.85
763 2823 7.851228 AGAAAATGGAGGTCTGTTTTTCTTTT 58.149 30.769 0.00 0.00 41.43 2.27
850 2935 3.883744 AAGTGGAGGTGCCGAAGCG 62.884 63.158 0.00 0.00 44.31 4.68
867 2952 3.449528 AGCGATCGATGGATCCATATG 57.550 47.619 27.38 21.36 45.16 1.78
885 2970 0.184933 TGTAAAGCACCCAAGCTGGT 59.815 50.000 0.00 0.00 45.89 4.00
978 3065 1.749334 GAGGTAGGGGGATCAGTGCG 61.749 65.000 0.00 0.00 0.00 5.34
979 3066 2.109181 GTAGGGGGATCAGTGCGC 59.891 66.667 0.00 0.00 0.00 6.09
980 3067 3.536917 TAGGGGGATCAGTGCGCG 61.537 66.667 0.00 0.00 0.00 6.86
986 3073 2.125912 GATCAGTGCGCGACCACT 60.126 61.111 12.10 12.53 46.47 4.00
994 3091 4.508128 CGCGACCACTACCGGCAT 62.508 66.667 0.00 0.00 0.00 4.40
1058 3155 0.390998 GAACTGGAGCTGCTCTGGAC 60.391 60.000 27.09 12.46 0.00 4.02
1134 3231 2.494918 GAGGTGGTCATCGACGGG 59.505 66.667 0.00 0.00 32.65 5.28
1287 3384 3.696051 TGCATGCTTCCTCCATAAAAGAC 59.304 43.478 20.33 0.00 0.00 3.01
1294 3417 1.557832 CCTCCATAAAAGACCGACCCA 59.442 52.381 0.00 0.00 0.00 4.51
1296 3419 1.066716 TCCATAAAAGACCGACCCACG 60.067 52.381 0.00 0.00 42.18 4.94
1331 3454 1.134401 ACGATCGATGGGTCAATTGCT 60.134 47.619 24.34 0.00 0.00 3.91
1351 3478 3.677424 GCTCTCCCATAATATCCTGACGC 60.677 52.174 0.00 0.00 0.00 5.19
1391 3518 0.740868 CACTGCAGGTGTACCATCCG 60.741 60.000 19.93 0.00 40.79 4.18
1454 3581 1.515020 CGAGTGGAGGCCTTCTCTG 59.485 63.158 20.58 8.93 42.10 3.35
1629 3762 1.076192 ACCGCCTCCTTCTATCCGT 60.076 57.895 0.00 0.00 0.00 4.69
1712 3869 4.481112 GCAGGGCAATGGCGTTCG 62.481 66.667 0.00 0.00 42.47 3.95
1779 3974 0.650512 GGATGCACCACGTACGATTG 59.349 55.000 24.41 15.69 38.79 2.67
1873 4076 4.595986 AGCTAATTGGTAATTTCCGTGGT 58.404 39.130 0.00 0.00 32.38 4.16
1875 4078 3.586100 AATTGGTAATTTCCGTGGTGC 57.414 42.857 0.00 0.00 0.00 5.01
2056 5822 5.432645 TGTGTTACTTGATTGACAGGTGAA 58.567 37.500 0.00 0.00 39.15 3.18
2108 5875 1.804396 CTTTTGCGGCCATCACACCA 61.804 55.000 2.24 0.00 0.00 4.17
2150 5917 1.100463 ACACGTGAATGTGCAGCCAA 61.100 50.000 25.01 0.00 43.74 4.52
2151 5918 0.241749 CACGTGAATGTGCAGCCAAT 59.758 50.000 10.90 0.00 32.31 3.16
2153 5920 2.095314 CACGTGAATGTGCAGCCAATTA 60.095 45.455 10.90 0.00 32.31 1.40
2154 5921 2.556189 ACGTGAATGTGCAGCCAATTAA 59.444 40.909 0.00 0.00 0.00 1.40
2166 5933 4.622740 GCAGCCAATTAATGTGTCAAGAAC 59.377 41.667 0.00 0.00 0.00 3.01
2179 5955 4.335315 GTGTCAAGAACCTGTGATGAACAA 59.665 41.667 0.00 0.00 38.67 2.83
2188 5964 3.126514 CCTGTGATGAACAAGCTAAGCAG 59.873 47.826 0.00 0.00 38.67 4.24
2200 5976 1.698165 CTAAGCAGAGCGAACGAACA 58.302 50.000 0.00 0.00 0.00 3.18
2229 6005 1.212935 GGCCAGTCACCATATCAGGTT 59.787 52.381 0.00 0.00 40.77 3.50
2230 6006 2.565841 GCCAGTCACCATATCAGGTTC 58.434 52.381 0.00 0.00 40.77 3.62
2231 6007 2.171448 GCCAGTCACCATATCAGGTTCT 59.829 50.000 0.00 0.00 40.77 3.01
2232 6008 3.742640 GCCAGTCACCATATCAGGTTCTC 60.743 52.174 0.00 0.00 40.77 2.87
2233 6009 3.491619 CCAGTCACCATATCAGGTTCTCG 60.492 52.174 0.00 0.00 40.77 4.04
2234 6010 2.695666 AGTCACCATATCAGGTTCTCGG 59.304 50.000 0.00 0.00 40.77 4.63
2235 6011 2.431057 GTCACCATATCAGGTTCTCGGT 59.569 50.000 0.00 0.00 40.77 4.69
2236 6012 3.635373 GTCACCATATCAGGTTCTCGGTA 59.365 47.826 0.00 0.00 40.77 4.02
2237 6013 4.098960 GTCACCATATCAGGTTCTCGGTAA 59.901 45.833 0.00 0.00 40.77 2.85
2238 6014 4.712829 TCACCATATCAGGTTCTCGGTAAA 59.287 41.667 0.00 0.00 40.77 2.01
2239 6015 5.050490 CACCATATCAGGTTCTCGGTAAAG 58.950 45.833 0.00 0.00 40.77 1.85
2240 6016 4.058817 CCATATCAGGTTCTCGGTAAAGC 58.941 47.826 0.00 0.00 0.00 3.51
2241 6017 2.295253 ATCAGGTTCTCGGTAAAGCG 57.705 50.000 0.00 0.00 0.00 4.68
2242 6018 0.245539 TCAGGTTCTCGGTAAAGCGG 59.754 55.000 1.34 0.00 0.00 5.52
2243 6019 0.037605 CAGGTTCTCGGTAAAGCGGT 60.038 55.000 1.34 0.00 0.00 5.68
2244 6020 0.037605 AGGTTCTCGGTAAAGCGGTG 60.038 55.000 1.34 0.00 0.00 4.94
2245 6021 1.017701 GGTTCTCGGTAAAGCGGTGG 61.018 60.000 1.34 0.00 0.00 4.61
2246 6022 0.037975 GTTCTCGGTAAAGCGGTGGA 60.038 55.000 1.34 0.00 0.00 4.02
2247 6023 0.680618 TTCTCGGTAAAGCGGTGGAA 59.319 50.000 1.34 2.44 0.00 3.53
2248 6024 0.680618 TCTCGGTAAAGCGGTGGAAA 59.319 50.000 1.34 0.00 0.00 3.13
2249 6025 1.070445 TCTCGGTAAAGCGGTGGAAAA 59.930 47.619 1.34 0.00 0.00 2.29
2250 6026 1.463444 CTCGGTAAAGCGGTGGAAAAG 59.537 52.381 1.34 0.00 0.00 2.27
2251 6027 0.109919 CGGTAAAGCGGTGGAAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
2252 6028 0.242825 GGTAAAGCGGTGGAAAAGCC 59.757 55.000 0.00 0.00 37.10 4.35
2253 6029 1.244816 GTAAAGCGGTGGAAAAGCCT 58.755 50.000 0.00 0.00 37.63 4.58
2254 6030 1.068541 GTAAAGCGGTGGAAAAGCCTG 60.069 52.381 0.00 0.00 37.63 4.85
2255 6031 0.755327 AAAGCGGTGGAAAAGCCTGT 60.755 50.000 0.00 0.00 37.63 4.00
2256 6032 0.755327 AAGCGGTGGAAAAGCCTGTT 60.755 50.000 0.00 0.00 37.63 3.16
2257 6033 1.172812 AGCGGTGGAAAAGCCTGTTC 61.173 55.000 0.00 0.00 37.63 3.18
2258 6034 1.172812 GCGGTGGAAAAGCCTGTTCT 61.173 55.000 0.00 0.00 37.63 3.01
2259 6035 0.875059 CGGTGGAAAAGCCTGTTCTC 59.125 55.000 0.00 0.00 37.63 2.87
2260 6036 0.875059 GGTGGAAAAGCCTGTTCTCG 59.125 55.000 0.00 0.00 37.63 4.04
2261 6037 0.875059 GTGGAAAAGCCTGTTCTCGG 59.125 55.000 0.00 0.00 37.63 4.63
2262 6038 0.472471 TGGAAAAGCCTGTTCTCGGT 59.528 50.000 0.00 0.00 37.63 4.69
2263 6039 1.695242 TGGAAAAGCCTGTTCTCGGTA 59.305 47.619 0.00 0.00 37.63 4.02
2272 6048 3.979495 GCCTGTTCTCGGTAATATACACG 59.021 47.826 0.00 0.00 0.00 4.49
2275 6051 4.353737 TGTTCTCGGTAATATACACGTGC 58.646 43.478 17.22 0.00 0.00 5.34
2276 6052 3.631145 TCTCGGTAATATACACGTGCC 57.369 47.619 17.22 5.71 0.00 5.01
2277 6053 3.216800 TCTCGGTAATATACACGTGCCT 58.783 45.455 17.22 5.50 0.00 4.75
2295 6071 1.287730 CTTGCTCCGTGACAGCACTC 61.288 60.000 0.00 0.00 46.65 3.51
2299 6075 3.406361 CCGTGACAGCACTCGCAC 61.406 66.667 0.00 0.00 42.93 5.34
2300 6076 3.756677 CGTGACAGCACTCGCACG 61.757 66.667 0.00 0.00 46.25 5.34
2301 6077 2.354656 GTGACAGCACTCGCACGA 60.355 61.111 0.00 0.00 41.84 4.35
2302 6078 1.734477 GTGACAGCACTCGCACGAT 60.734 57.895 0.00 0.00 41.84 3.73
2303 6079 1.444383 TGACAGCACTCGCACGATC 60.444 57.895 0.00 0.00 42.27 3.69
2305 6081 2.125952 CAGCACTCGCACGATCCA 60.126 61.111 0.00 0.00 42.27 3.41
2307 6083 3.558411 GCACTCGCACGATCCAGC 61.558 66.667 0.00 0.00 38.36 4.85
2308 6084 2.887568 CACTCGCACGATCCAGCC 60.888 66.667 0.00 0.00 0.00 4.85
2309 6085 3.381983 ACTCGCACGATCCAGCCA 61.382 61.111 0.00 0.00 0.00 4.75
2310 6086 2.107750 CTCGCACGATCCAGCCAT 59.892 61.111 0.00 0.00 0.00 4.40
2311 6087 1.363807 CTCGCACGATCCAGCCATA 59.636 57.895 0.00 0.00 0.00 2.74
2314 6090 1.598130 GCACGATCCAGCCATACCC 60.598 63.158 0.00 0.00 0.00 3.69
2315 6091 2.044806 GCACGATCCAGCCATACCCT 62.045 60.000 0.00 0.00 0.00 4.34
2316 6092 0.469917 CACGATCCAGCCATACCCTT 59.530 55.000 0.00 0.00 0.00 3.95
2317 6093 0.469917 ACGATCCAGCCATACCCTTG 59.530 55.000 0.00 0.00 0.00 3.61
2320 6096 0.552848 ATCCAGCCATACCCTTGGTG 59.447 55.000 0.00 0.00 39.11 4.17
2321 6097 1.754234 CCAGCCATACCCTTGGTGC 60.754 63.158 0.00 0.00 39.11 5.01
2322 6098 1.754234 CAGCCATACCCTTGGTGCC 60.754 63.158 0.00 0.00 39.11 5.01
2323 6099 2.828549 GCCATACCCTTGGTGCCG 60.829 66.667 0.00 0.00 39.11 5.69
2324 6100 2.674754 CCATACCCTTGGTGCCGT 59.325 61.111 0.00 0.00 36.19 5.68
2325 6101 1.001393 CCATACCCTTGGTGCCGTT 60.001 57.895 0.00 0.00 36.19 4.44
2326 6102 1.312371 CCATACCCTTGGTGCCGTTG 61.312 60.000 0.00 0.00 36.19 4.10
2355 6207 3.242252 CCAACACGTTTGCCAAAAATGAC 60.242 43.478 8.48 0.00 0.00 3.06
2358 6210 3.997021 ACACGTTTGCCAAAAATGACAAA 59.003 34.783 8.48 0.00 0.00 2.83
2360 6212 3.620821 ACGTTTGCCAAAAATGACAAAGG 59.379 39.130 8.17 8.17 41.31 3.11
2363 6215 5.391416 CGTTTGCCAAAAATGACAAAGGTTT 60.391 36.000 0.00 0.00 34.74 3.27
2364 6216 6.385843 GTTTGCCAAAAATGACAAAGGTTTT 58.614 32.000 0.00 0.00 33.02 2.43
2366 6218 4.637977 TGCCAAAAATGACAAAGGTTTTCC 59.362 37.500 0.00 0.00 41.05 3.13
2368 6220 5.124617 GCCAAAAATGACAAAGGTTTTCCAA 59.875 36.000 0.00 0.00 43.73 3.53
2369 6221 6.349694 GCCAAAAATGACAAAGGTTTTCCAAA 60.350 34.615 0.00 0.00 43.73 3.28
2371 6223 8.084684 CCAAAAATGACAAAGGTTTTCCAAAAA 58.915 29.630 0.00 0.00 43.73 1.94
2374 6226 7.751768 AATGACAAAGGTTTTCCAAAAACAA 57.248 28.000 15.03 0.00 43.73 2.83
2375 6227 7.936496 ATGACAAAGGTTTTCCAAAAACAAT 57.064 28.000 15.03 3.03 43.73 2.71
2376 6228 9.454859 AATGACAAAGGTTTTCCAAAAACAATA 57.545 25.926 15.03 0.00 43.73 1.90
2377 6229 8.485976 TGACAAAGGTTTTCCAAAAACAATAG 57.514 30.769 15.03 6.58 43.73 1.73
2378 6230 8.314751 TGACAAAGGTTTTCCAAAAACAATAGA 58.685 29.630 15.03 0.00 43.73 1.98
2379 6231 8.716646 ACAAAGGTTTTCCAAAAACAATAGAG 57.283 30.769 15.03 4.71 43.73 2.43
2380 6232 7.279981 ACAAAGGTTTTCCAAAAACAATAGAGC 59.720 33.333 15.03 0.00 43.73 4.09
2381 6233 5.528870 AGGTTTTCCAAAAACAATAGAGCG 58.471 37.500 15.03 0.00 43.73 5.03
2382 6234 4.149922 GGTTTTCCAAAAACAATAGAGCGC 59.850 41.667 15.03 0.00 40.31 5.92
2383 6235 3.569250 TTCCAAAAACAATAGAGCGCC 57.431 42.857 2.29 0.00 0.00 6.53
2384 6236 2.509569 TCCAAAAACAATAGAGCGCCA 58.490 42.857 2.29 0.00 0.00 5.69
2385 6237 2.887783 TCCAAAAACAATAGAGCGCCAA 59.112 40.909 2.29 0.00 0.00 4.52
2394 6246 4.077188 GAGCGCCAAGACGTGTGC 62.077 66.667 2.29 0.00 34.88 4.57
2403 6255 3.343421 GACGTGTGCGGTGAACCC 61.343 66.667 0.00 0.00 43.45 4.11
2407 6259 3.164977 TGTGCGGTGAACCCAGGA 61.165 61.111 0.00 0.00 0.00 3.86
2425 6277 1.540797 GGAGCAATTGTGGCAAAGCAA 60.541 47.619 7.40 0.00 0.00 3.91
2432 6284 0.175302 TGTGGCAAAGCAACAACAGG 59.825 50.000 0.00 0.00 39.77 4.00
2433 6285 0.175531 GTGGCAAAGCAACAACAGGT 59.824 50.000 0.00 0.00 31.84 4.00
2434 6286 1.407258 GTGGCAAAGCAACAACAGGTA 59.593 47.619 0.00 0.00 31.84 3.08
2435 6287 1.407258 TGGCAAAGCAACAACAGGTAC 59.593 47.619 0.00 0.00 0.00 3.34
2436 6288 1.599419 GGCAAAGCAACAACAGGTACG 60.599 52.381 0.00 0.00 0.00 3.67
2437 6289 1.064952 GCAAAGCAACAACAGGTACGT 59.935 47.619 0.00 0.00 0.00 3.57
2438 6290 2.853281 GCAAAGCAACAACAGGTACGTC 60.853 50.000 0.00 0.00 0.00 4.34
2439 6291 2.612212 CAAAGCAACAACAGGTACGTCT 59.388 45.455 0.00 0.00 0.00 4.18
2440 6292 2.150397 AGCAACAACAGGTACGTCTC 57.850 50.000 0.00 0.00 0.00 3.36
2441 6293 1.687123 AGCAACAACAGGTACGTCTCT 59.313 47.619 0.00 0.00 0.00 3.10
2442 6294 2.059541 GCAACAACAGGTACGTCTCTC 58.940 52.381 0.00 0.00 0.00 3.20
2443 6295 2.288273 GCAACAACAGGTACGTCTCTCT 60.288 50.000 0.00 0.00 0.00 3.10
2444 6296 3.566523 CAACAACAGGTACGTCTCTCTC 58.433 50.000 0.00 0.00 0.00 3.20
2445 6297 2.161030 ACAACAGGTACGTCTCTCTCC 58.839 52.381 0.00 0.00 0.00 3.71
2446 6298 1.473278 CAACAGGTACGTCTCTCTCCC 59.527 57.143 0.00 0.00 0.00 4.30
2447 6299 0.993470 ACAGGTACGTCTCTCTCCCT 59.007 55.000 0.00 0.00 0.00 4.20
2448 6300 2.194859 ACAGGTACGTCTCTCTCCCTA 58.805 52.381 0.00 0.00 0.00 3.53
2449 6301 2.575279 ACAGGTACGTCTCTCTCCCTAA 59.425 50.000 0.00 0.00 0.00 2.69
2450 6302 3.202595 ACAGGTACGTCTCTCTCCCTAAT 59.797 47.826 0.00 0.00 0.00 1.73
2451 6303 4.411540 ACAGGTACGTCTCTCTCCCTAATA 59.588 45.833 0.00 0.00 0.00 0.98
2452 6304 5.104193 ACAGGTACGTCTCTCTCCCTAATAA 60.104 44.000 0.00 0.00 0.00 1.40
2453 6305 6.005198 CAGGTACGTCTCTCTCCCTAATAAT 58.995 44.000 0.00 0.00 0.00 1.28
2454 6306 7.166851 CAGGTACGTCTCTCTCCCTAATAATA 58.833 42.308 0.00 0.00 0.00 0.98
2455 6307 7.664731 CAGGTACGTCTCTCTCCCTAATAATAA 59.335 40.741 0.00 0.00 0.00 1.40
2456 6308 8.223330 AGGTACGTCTCTCTCCCTAATAATAAA 58.777 37.037 0.00 0.00 0.00 1.40
2457 6309 8.513774 GGTACGTCTCTCTCCCTAATAATAAAG 58.486 40.741 0.00 0.00 0.00 1.85
2458 6310 6.983984 ACGTCTCTCTCCCTAATAATAAAGC 58.016 40.000 0.00 0.00 0.00 3.51
2459 6311 6.550108 ACGTCTCTCTCCCTAATAATAAAGCA 59.450 38.462 0.00 0.00 0.00 3.91
2460 6312 6.864165 CGTCTCTCTCCCTAATAATAAAGCAC 59.136 42.308 0.00 0.00 0.00 4.40
2461 6313 6.864165 GTCTCTCTCCCTAATAATAAAGCACG 59.136 42.308 0.00 0.00 0.00 5.34
2462 6314 6.015350 TCTCTCTCCCTAATAATAAAGCACGG 60.015 42.308 0.00 0.00 0.00 4.94
2463 6315 5.011738 TCTCTCCCTAATAATAAAGCACGGG 59.988 44.000 0.00 0.00 0.00 5.28
2464 6316 4.657039 TCTCCCTAATAATAAAGCACGGGT 59.343 41.667 0.00 0.00 0.00 5.28
2465 6317 5.131475 TCTCCCTAATAATAAAGCACGGGTT 59.869 40.000 0.00 0.00 0.00 4.11
2466 6318 5.127491 TCCCTAATAATAAAGCACGGGTTG 58.873 41.667 0.00 0.00 0.00 3.77
2467 6319 5.104444 TCCCTAATAATAAAGCACGGGTTGA 60.104 40.000 0.00 0.00 0.00 3.18
2468 6320 5.238650 CCCTAATAATAAAGCACGGGTTGAG 59.761 44.000 0.00 0.00 0.00 3.02
2469 6321 5.820947 CCTAATAATAAAGCACGGGTTGAGT 59.179 40.000 0.00 0.00 0.00 3.41
2470 6322 5.813080 AATAATAAAGCACGGGTTGAGTC 57.187 39.130 0.00 0.00 0.00 3.36
2471 6323 1.722011 ATAAAGCACGGGTTGAGTCG 58.278 50.000 0.00 0.00 0.00 4.18
2472 6324 0.320073 TAAAGCACGGGTTGAGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
2473 6325 4.681978 AGCACGGGTTGAGTCGGC 62.682 66.667 0.00 0.00 0.00 5.54
2475 6327 4.003788 CACGGGTTGAGTCGGCCT 62.004 66.667 0.00 0.00 0.00 5.19
2476 6328 2.283388 ACGGGTTGAGTCGGCCTA 60.283 61.111 0.00 0.00 0.00 3.93
2477 6329 2.183555 CGGGTTGAGTCGGCCTAC 59.816 66.667 0.00 0.00 0.00 3.18
2478 6330 2.183555 GGGTTGAGTCGGCCTACG 59.816 66.667 0.00 0.00 46.11 3.51
2479 6331 2.183555 GGTTGAGTCGGCCTACGG 59.816 66.667 0.00 0.00 44.45 4.02
2492 6344 2.260481 GCCTACGGCGATTAGAATAGC 58.740 52.381 16.62 0.77 39.62 2.97
2493 6345 2.516923 CCTACGGCGATTAGAATAGCG 58.483 52.381 16.62 0.00 37.82 4.26
2494 6346 2.516923 CTACGGCGATTAGAATAGCGG 58.483 52.381 16.62 11.52 41.02 5.52
2495 6347 0.038526 ACGGCGATTAGAATAGCGGG 60.039 55.000 16.62 7.36 40.08 6.13
2496 6348 0.038526 CGGCGATTAGAATAGCGGGT 60.039 55.000 0.00 0.00 37.82 5.28
2497 6349 1.604693 CGGCGATTAGAATAGCGGGTT 60.605 52.381 0.00 0.00 37.82 4.11
2498 6350 2.490991 GGCGATTAGAATAGCGGGTTT 58.509 47.619 1.94 0.00 37.82 3.27
2499 6351 2.876550 GGCGATTAGAATAGCGGGTTTT 59.123 45.455 1.94 0.00 37.82 2.43
2500 6352 3.303791 GGCGATTAGAATAGCGGGTTTTG 60.304 47.826 1.94 0.00 37.82 2.44
2501 6353 3.558418 GCGATTAGAATAGCGGGTTTTGA 59.442 43.478 0.00 0.00 0.00 2.69
2502 6354 4.552184 GCGATTAGAATAGCGGGTTTTGAC 60.552 45.833 0.00 0.00 0.00 3.18
2503 6355 4.025145 CGATTAGAATAGCGGGTTTTGACC 60.025 45.833 0.00 0.00 0.00 4.02
2536 6388 4.778143 GGCGGCCGTTGATCCTGT 62.778 66.667 28.70 0.00 0.00 4.00
2537 6389 3.499737 GCGGCCGTTGATCCTGTG 61.500 66.667 28.70 0.00 0.00 3.66
2538 6390 2.047274 CGGCCGTTGATCCTGTGT 60.047 61.111 19.50 0.00 0.00 3.72
2539 6391 1.671054 CGGCCGTTGATCCTGTGTT 60.671 57.895 19.50 0.00 0.00 3.32
2540 6392 0.390603 CGGCCGTTGATCCTGTGTTA 60.391 55.000 19.50 0.00 0.00 2.41
2541 6393 1.084289 GGCCGTTGATCCTGTGTTAC 58.916 55.000 0.00 0.00 0.00 2.50
2542 6394 1.609580 GGCCGTTGATCCTGTGTTACA 60.610 52.381 0.00 0.00 0.00 2.41
2543 6395 1.732259 GCCGTTGATCCTGTGTTACAG 59.268 52.381 2.05 2.05 45.53 2.74
2552 6404 1.453155 CTGTGTTACAGGTCATGGGC 58.547 55.000 1.08 0.00 42.35 5.36
2553 6405 0.767998 TGTGTTACAGGTCATGGGCA 59.232 50.000 0.00 0.00 0.00 5.36
2554 6406 1.354031 TGTGTTACAGGTCATGGGCAT 59.646 47.619 0.00 0.00 0.00 4.40
2555 6407 2.017049 GTGTTACAGGTCATGGGCATC 58.983 52.381 0.00 0.00 0.00 3.91
2556 6408 1.915489 TGTTACAGGTCATGGGCATCT 59.085 47.619 0.00 0.00 0.00 2.90
2557 6409 2.308570 TGTTACAGGTCATGGGCATCTT 59.691 45.455 0.00 0.00 0.00 2.40
2558 6410 2.945668 GTTACAGGTCATGGGCATCTTC 59.054 50.000 0.00 0.00 0.00 2.87
2559 6411 0.994247 ACAGGTCATGGGCATCTTCA 59.006 50.000 0.00 0.00 0.00 3.02
2560 6412 1.567649 ACAGGTCATGGGCATCTTCAT 59.432 47.619 0.00 0.00 0.00 2.57
2561 6413 1.954382 CAGGTCATGGGCATCTTCATG 59.046 52.381 0.00 0.00 41.35 3.07
2578 6430 9.181805 CATCTTCATGCAATTACTTTGATGATC 57.818 33.333 8.74 0.00 37.53 2.92
2579 6431 8.515695 TCTTCATGCAATTACTTTGATGATCT 57.484 30.769 0.00 0.00 37.53 2.75
2580 6432 8.403236 TCTTCATGCAATTACTTTGATGATCTG 58.597 33.333 0.00 0.00 37.53 2.90
2581 6433 7.868906 TCATGCAATTACTTTGATGATCTGA 57.131 32.000 0.00 0.00 37.53 3.27
2582 6434 7.700505 TCATGCAATTACTTTGATGATCTGAC 58.299 34.615 0.00 0.00 37.53 3.51
2583 6435 6.110543 TGCAATTACTTTGATGATCTGACG 57.889 37.500 0.00 0.00 37.53 4.35
2584 6436 5.874261 TGCAATTACTTTGATGATCTGACGA 59.126 36.000 0.00 0.00 37.53 4.20
2585 6437 6.036408 TGCAATTACTTTGATGATCTGACGAG 59.964 38.462 0.00 0.00 37.53 4.18
2586 6438 6.256539 GCAATTACTTTGATGATCTGACGAGA 59.743 38.462 0.00 0.00 37.53 4.04
2587 6439 7.516470 GCAATTACTTTGATGATCTGACGAGAG 60.516 40.741 0.00 0.00 37.53 3.20
2588 6440 6.759497 TTACTTTGATGATCTGACGAGAGA 57.241 37.500 0.00 0.00 0.00 3.10
2589 6441 5.651387 ACTTTGATGATCTGACGAGAGAA 57.349 39.130 0.00 0.00 0.00 2.87
2590 6442 5.649557 ACTTTGATGATCTGACGAGAGAAG 58.350 41.667 0.00 0.00 0.00 2.85
2591 6443 4.645762 TTGATGATCTGACGAGAGAAGG 57.354 45.455 0.00 0.00 0.00 3.46
2592 6444 3.891049 TGATGATCTGACGAGAGAAGGA 58.109 45.455 0.00 0.00 0.00 3.36
2593 6445 3.882288 TGATGATCTGACGAGAGAAGGAG 59.118 47.826 0.00 0.00 0.00 3.69
2594 6446 3.636153 TGATCTGACGAGAGAAGGAGA 57.364 47.619 0.00 0.00 0.00 3.71
2595 6447 3.275143 TGATCTGACGAGAGAAGGAGAC 58.725 50.000 0.00 0.00 0.00 3.36
2596 6448 1.728068 TCTGACGAGAGAAGGAGACG 58.272 55.000 0.00 0.00 0.00 4.18
2597 6449 1.002201 TCTGACGAGAGAAGGAGACGT 59.998 52.381 0.00 0.00 39.82 4.34
2598 6450 1.129624 CTGACGAGAGAAGGAGACGTG 59.870 57.143 0.00 0.00 37.32 4.49
2599 6451 1.270678 TGACGAGAGAAGGAGACGTGA 60.271 52.381 0.00 0.00 37.32 4.35
2600 6452 2.011222 GACGAGAGAAGGAGACGTGAT 58.989 52.381 0.00 0.00 37.32 3.06
2601 6453 1.740585 ACGAGAGAAGGAGACGTGATG 59.259 52.381 0.00 0.00 35.91 3.07
2602 6454 1.532921 CGAGAGAAGGAGACGTGATGC 60.533 57.143 0.00 0.00 0.00 3.91
2618 6470 2.871021 TGCGTTCATGCATGGATGT 58.129 47.368 24.93 0.00 40.62 3.06
2619 6471 0.452585 TGCGTTCATGCATGGATGTG 59.547 50.000 24.93 16.75 40.62 3.21
2620 6472 0.452987 GCGTTCATGCATGGATGTGT 59.547 50.000 24.93 0.00 34.15 3.72
2621 6473 1.135315 GCGTTCATGCATGGATGTGTT 60.135 47.619 24.93 0.00 34.15 3.32
2622 6474 2.521996 CGTTCATGCATGGATGTGTTG 58.478 47.619 25.97 11.00 0.00 3.33
2623 6475 2.264813 GTTCATGCATGGATGTGTTGC 58.735 47.619 25.97 9.46 36.91 4.17
2624 6476 1.842052 TCATGCATGGATGTGTTGCT 58.158 45.000 25.97 0.00 37.28 3.91
2625 6477 1.746787 TCATGCATGGATGTGTTGCTC 59.253 47.619 25.97 0.00 37.28 4.26
2626 6478 1.108776 ATGCATGGATGTGTTGCTCC 58.891 50.000 0.00 0.00 37.28 4.70
2627 6479 0.966875 TGCATGGATGTGTTGCTCCC 60.967 55.000 0.00 0.00 37.28 4.30
2628 6480 1.996786 GCATGGATGTGTTGCTCCCG 61.997 60.000 0.00 0.00 33.61 5.14
2629 6481 1.077501 ATGGATGTGTTGCTCCCGG 60.078 57.895 0.00 0.00 0.00 5.73
2630 6482 3.134127 GGATGTGTTGCTCCCGGC 61.134 66.667 0.00 0.00 42.22 6.13
2631 6483 2.045926 GATGTGTTGCTCCCGGCT 60.046 61.111 0.00 0.00 42.39 5.52
2632 6484 2.360350 ATGTGTTGCTCCCGGCTG 60.360 61.111 0.00 0.00 42.39 4.85
2633 6485 2.803155 GATGTGTTGCTCCCGGCTGA 62.803 60.000 0.00 0.00 42.39 4.26
2634 6486 2.743928 GTGTTGCTCCCGGCTGAG 60.744 66.667 0.00 0.00 42.39 3.35
2635 6487 4.020617 TGTTGCTCCCGGCTGAGG 62.021 66.667 9.44 0.00 42.39 3.86
2644 6496 3.869272 CGGCTGAGGCGTTGATGC 61.869 66.667 20.91 0.00 46.33 3.91
2645 6497 2.747460 GGCTGAGGCGTTGATGCA 60.747 61.111 0.00 0.00 39.81 3.96
2646 6498 2.758089 GGCTGAGGCGTTGATGCAG 61.758 63.158 0.00 0.00 39.81 4.41
2647 6499 2.037136 GCTGAGGCGTTGATGCAGT 61.037 57.895 0.00 0.00 36.28 4.40
2648 6500 1.792301 CTGAGGCGTTGATGCAGTG 59.208 57.895 0.00 0.00 36.28 3.66
2649 6501 0.952497 CTGAGGCGTTGATGCAGTGT 60.952 55.000 0.00 0.00 36.28 3.55
2650 6502 0.534877 TGAGGCGTTGATGCAGTGTT 60.535 50.000 0.00 0.00 36.28 3.32
2651 6503 0.166814 GAGGCGTTGATGCAGTGTTC 59.833 55.000 0.00 0.00 36.28 3.18
2652 6504 1.210155 GGCGTTGATGCAGTGTTCC 59.790 57.895 0.00 0.00 36.28 3.62
2653 6505 1.237285 GGCGTTGATGCAGTGTTCCT 61.237 55.000 0.00 0.00 36.28 3.36
2654 6506 1.438651 GCGTTGATGCAGTGTTCCTA 58.561 50.000 0.00 0.00 34.15 2.94
2655 6507 1.394917 GCGTTGATGCAGTGTTCCTAG 59.605 52.381 0.00 0.00 34.15 3.02
2656 6508 1.394917 CGTTGATGCAGTGTTCCTAGC 59.605 52.381 0.00 0.00 0.00 3.42
2657 6509 2.704572 GTTGATGCAGTGTTCCTAGCT 58.295 47.619 0.00 0.00 0.00 3.32
2658 6510 3.676049 CGTTGATGCAGTGTTCCTAGCTA 60.676 47.826 0.00 0.00 0.00 3.32
2659 6511 3.526931 TGATGCAGTGTTCCTAGCTAC 57.473 47.619 0.00 0.00 0.00 3.58
2660 6512 2.831526 TGATGCAGTGTTCCTAGCTACA 59.168 45.455 0.00 0.00 0.00 2.74
2661 6513 3.118992 TGATGCAGTGTTCCTAGCTACAG 60.119 47.826 0.00 0.00 0.00 2.74
2662 6514 1.066858 TGCAGTGTTCCTAGCTACAGC 60.067 52.381 0.00 0.00 42.49 4.40
2663 6515 1.740718 GCAGTGTTCCTAGCTACAGCC 60.741 57.143 0.00 0.00 43.38 4.85
2664 6516 1.827969 CAGTGTTCCTAGCTACAGCCT 59.172 52.381 0.00 0.00 43.38 4.58
2665 6517 3.024547 CAGTGTTCCTAGCTACAGCCTA 58.975 50.000 0.00 0.00 43.38 3.93
2666 6518 3.067461 CAGTGTTCCTAGCTACAGCCTAG 59.933 52.174 0.00 0.04 43.38 3.02
2667 6519 3.053544 AGTGTTCCTAGCTACAGCCTAGA 60.054 47.826 0.00 0.00 43.38 2.43
2668 6520 3.067040 GTGTTCCTAGCTACAGCCTAGAC 59.933 52.174 0.00 0.00 43.38 2.59
2669 6521 2.257691 TCCTAGCTACAGCCTAGACG 57.742 55.000 0.00 0.00 43.38 4.18
2670 6522 0.594110 CCTAGCTACAGCCTAGACGC 59.406 60.000 0.00 0.00 43.38 5.19
2671 6523 1.600023 CTAGCTACAGCCTAGACGCT 58.400 55.000 0.00 0.00 43.38 5.07
2677 6529 3.947173 AGCCTAGACGCTGCTGAT 58.053 55.556 0.00 0.00 37.82 2.90
2678 6530 3.117657 AGCCTAGACGCTGCTGATA 57.882 52.632 0.00 0.00 37.82 2.15
2679 6531 1.403814 AGCCTAGACGCTGCTGATAA 58.596 50.000 0.00 0.00 37.82 1.75
2680 6532 1.967066 AGCCTAGACGCTGCTGATAAT 59.033 47.619 0.00 0.00 37.82 1.28
2681 6533 2.064762 GCCTAGACGCTGCTGATAATG 58.935 52.381 0.00 0.00 0.00 1.90
2682 6534 2.064762 CCTAGACGCTGCTGATAATGC 58.935 52.381 0.00 0.00 0.00 3.56
2686 6538 3.138296 CGCTGCTGATAATGCGTTG 57.862 52.632 0.08 0.00 42.93 4.10
2687 6539 0.927083 CGCTGCTGATAATGCGTTGC 60.927 55.000 0.08 0.00 42.93 4.17
2688 6540 0.379669 GCTGCTGATAATGCGTTGCT 59.620 50.000 0.08 0.00 0.00 3.91
2689 6541 1.596464 GCTGCTGATAATGCGTTGCTC 60.596 52.381 0.08 0.00 0.00 4.26
2690 6542 1.003116 CTGCTGATAATGCGTTGCTCC 60.003 52.381 0.08 0.00 0.00 4.70
2691 6543 0.308993 GCTGATAATGCGTTGCTCCC 59.691 55.000 0.08 0.00 0.00 4.30
2692 6544 0.583438 CTGATAATGCGTTGCTCCCG 59.417 55.000 0.08 0.00 0.00 5.14
2693 6545 0.813610 TGATAATGCGTTGCTCCCGG 60.814 55.000 0.08 0.00 0.00 5.73
2694 6546 2.117941 GATAATGCGTTGCTCCCGGC 62.118 60.000 0.08 0.00 42.22 6.13
2700 6552 3.733960 GTTGCTCCCGGCCGTTTC 61.734 66.667 26.12 10.60 40.92 2.78
2701 6553 4.257654 TTGCTCCCGGCCGTTTCA 62.258 61.111 26.12 13.25 40.92 2.69
2702 6554 3.776347 TTGCTCCCGGCCGTTTCAA 62.776 57.895 26.12 18.31 40.92 2.69
2703 6555 2.981350 GCTCCCGGCCGTTTCAAA 60.981 61.111 26.12 1.16 34.27 2.69
2704 6556 2.978018 GCTCCCGGCCGTTTCAAAG 61.978 63.158 26.12 12.28 34.27 2.77
2705 6557 2.281900 TCCCGGCCGTTTCAAAGG 60.282 61.111 26.12 16.31 0.00 3.11
2706 6558 2.281900 CCCGGCCGTTTCAAAGGA 60.282 61.111 26.12 0.00 0.00 3.36
2707 6559 1.677633 CCCGGCCGTTTCAAAGGAT 60.678 57.895 26.12 0.00 0.00 3.24
2708 6560 1.248101 CCCGGCCGTTTCAAAGGATT 61.248 55.000 26.12 0.00 0.00 3.01
2709 6561 0.601057 CCGGCCGTTTCAAAGGATTT 59.399 50.000 26.12 0.00 40.26 2.17
2719 6571 1.875963 AAAGGATTTGACGGCTGCG 59.124 52.632 0.00 0.00 36.60 5.18
2720 6572 0.889186 AAAGGATTTGACGGCTGCGT 60.889 50.000 0.00 0.00 36.60 5.24
2721 6573 0.889186 AAGGATTTGACGGCTGCGTT 60.889 50.000 0.00 0.00 0.00 4.84
2722 6574 1.154225 GGATTTGACGGCTGCGTTG 60.154 57.895 0.00 0.00 0.00 4.10
2723 6575 1.574428 GATTTGACGGCTGCGTTGT 59.426 52.632 0.00 0.00 0.00 3.32
2724 6576 0.040425 GATTTGACGGCTGCGTTGTT 60.040 50.000 0.00 0.00 0.00 2.83
2725 6577 0.040425 ATTTGACGGCTGCGTTGTTC 60.040 50.000 0.00 0.00 0.00 3.18
2726 6578 1.369839 TTTGACGGCTGCGTTGTTCA 61.370 50.000 0.00 0.00 0.00 3.18
2727 6579 2.042520 TTGACGGCTGCGTTGTTCAC 62.043 55.000 0.00 0.00 0.00 3.18
2736 6588 1.779061 CGTTGTTCACGTCCCATCG 59.221 57.895 0.00 0.00 44.49 3.84
2737 6589 1.495951 GTTGTTCACGTCCCATCGC 59.504 57.895 0.00 0.00 0.00 4.58
2738 6590 0.949105 GTTGTTCACGTCCCATCGCT 60.949 55.000 0.00 0.00 0.00 4.93
2739 6591 0.669318 TTGTTCACGTCCCATCGCTC 60.669 55.000 0.00 0.00 0.00 5.03
2740 6592 2.158959 GTTCACGTCCCATCGCTCG 61.159 63.158 0.00 0.00 0.00 5.03
2741 6593 3.982372 TTCACGTCCCATCGCTCGC 62.982 63.158 0.00 0.00 0.00 5.03
2742 6594 4.498520 CACGTCCCATCGCTCGCT 62.499 66.667 0.00 0.00 0.00 4.93
2743 6595 4.194720 ACGTCCCATCGCTCGCTC 62.195 66.667 0.00 0.00 0.00 5.03
2744 6596 3.893763 CGTCCCATCGCTCGCTCT 61.894 66.667 0.00 0.00 0.00 4.09
2745 6597 2.279120 GTCCCATCGCTCGCTCTG 60.279 66.667 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.317854 CACAGCGTCACTCGACTTGA 60.318 55.000 0.00 0.00 42.86 3.02
8 9 0.317854 TCACAGCGTCACTCGACTTG 60.318 55.000 0.00 0.00 42.86 3.16
9 10 0.039978 CTCACAGCGTCACTCGACTT 60.040 55.000 0.00 0.00 42.86 3.01
10 11 1.576920 CTCACAGCGTCACTCGACT 59.423 57.895 0.00 0.00 42.86 4.18
11 12 2.083522 GCTCACAGCGTCACTCGAC 61.084 63.158 0.00 0.00 42.86 4.20
12 13 1.866853 ATGCTCACAGCGTCACTCGA 61.867 55.000 0.00 0.00 46.26 4.04
13 14 1.445066 ATGCTCACAGCGTCACTCG 60.445 57.895 0.00 0.00 46.26 4.18
14 15 4.586618 ATGCTCACAGCGTCACTC 57.413 55.556 0.00 0.00 46.26 3.51
19 20 0.319728 AGTCAAGATGCTCACAGCGT 59.680 50.000 0.00 0.00 46.26 5.07
20 21 0.997932 GAGTCAAGATGCTCACAGCG 59.002 55.000 0.00 0.00 46.26 5.18
21 22 2.090400 TGAGTCAAGATGCTCACAGC 57.910 50.000 0.00 0.00 42.82 4.40
22 23 3.597255 ACATGAGTCAAGATGCTCACAG 58.403 45.455 0.00 0.00 43.45 3.66
23 24 3.593096 GACATGAGTCAAGATGCTCACA 58.407 45.455 0.00 0.00 43.45 3.58
24 25 2.602211 CGACATGAGTCAAGATGCTCAC 59.398 50.000 0.00 0.00 45.23 3.51
25 26 2.493278 TCGACATGAGTCAAGATGCTCA 59.507 45.455 0.00 0.00 45.23 4.26
26 27 3.114809 CTCGACATGAGTCAAGATGCTC 58.885 50.000 0.00 0.00 45.23 4.26
27 28 3.162202 CTCGACATGAGTCAAGATGCT 57.838 47.619 0.00 0.00 45.23 3.79
41 42 0.594028 GTTCACAGCGTCACTCGACA 60.594 55.000 0.00 0.00 42.74 4.35
73 74 3.930336 TCATCTCACAAGTCACACCATC 58.070 45.455 0.00 0.00 0.00 3.51
74 75 4.067896 GTTCATCTCACAAGTCACACCAT 58.932 43.478 0.00 0.00 0.00 3.55
75 76 3.466836 GTTCATCTCACAAGTCACACCA 58.533 45.455 0.00 0.00 0.00 4.17
76 77 2.476619 CGTTCATCTCACAAGTCACACC 59.523 50.000 0.00 0.00 0.00 4.16
77 78 2.476619 CCGTTCATCTCACAAGTCACAC 59.523 50.000 0.00 0.00 0.00 3.82
78 79 2.364002 TCCGTTCATCTCACAAGTCACA 59.636 45.455 0.00 0.00 0.00 3.58
79 80 3.026630 TCCGTTCATCTCACAAGTCAC 57.973 47.619 0.00 0.00 0.00 3.67
80 81 3.588955 CATCCGTTCATCTCACAAGTCA 58.411 45.455 0.00 0.00 0.00 3.41
81 82 2.932614 CCATCCGTTCATCTCACAAGTC 59.067 50.000 0.00 0.00 0.00 3.01
82 83 2.303022 ACCATCCGTTCATCTCACAAGT 59.697 45.455 0.00 0.00 0.00 3.16
83 84 2.674852 CACCATCCGTTCATCTCACAAG 59.325 50.000 0.00 0.00 0.00 3.16
84 85 2.038426 ACACCATCCGTTCATCTCACAA 59.962 45.455 0.00 0.00 0.00 3.33
85 86 1.623311 ACACCATCCGTTCATCTCACA 59.377 47.619 0.00 0.00 0.00 3.58
86 87 2.002586 CACACCATCCGTTCATCTCAC 58.997 52.381 0.00 0.00 0.00 3.51
87 88 1.899142 TCACACCATCCGTTCATCTCA 59.101 47.619 0.00 0.00 0.00 3.27
88 89 2.093973 AGTCACACCATCCGTTCATCTC 60.094 50.000 0.00 0.00 0.00 2.75
89 90 1.902508 AGTCACACCATCCGTTCATCT 59.097 47.619 0.00 0.00 0.00 2.90
90 91 2.386661 AGTCACACCATCCGTTCATC 57.613 50.000 0.00 0.00 0.00 2.92
91 92 2.224523 ACAAGTCACACCATCCGTTCAT 60.225 45.455 0.00 0.00 0.00 2.57
92 93 1.140052 ACAAGTCACACCATCCGTTCA 59.860 47.619 0.00 0.00 0.00 3.18
93 94 1.531149 CACAAGTCACACCATCCGTTC 59.469 52.381 0.00 0.00 0.00 3.95
94 95 1.140052 TCACAAGTCACACCATCCGTT 59.860 47.619 0.00 0.00 0.00 4.44
95 96 0.756294 TCACAAGTCACACCATCCGT 59.244 50.000 0.00 0.00 0.00 4.69
96 97 1.000843 TCTCACAAGTCACACCATCCG 59.999 52.381 0.00 0.00 0.00 4.18
97 98 2.839486 TCTCACAAGTCACACCATCC 57.161 50.000 0.00 0.00 0.00 3.51
102 103 2.476619 CCGTTCATCTCACAAGTCACAC 59.523 50.000 0.00 0.00 0.00 3.82
123 124 3.512516 GGCAGGTGAAGCGGATGC 61.513 66.667 0.00 0.00 43.24 3.91
133 134 1.098050 GGCAGAACATAAGGCAGGTG 58.902 55.000 0.00 0.00 0.00 4.00
136 137 2.119801 ACAGGCAGAACATAAGGCAG 57.880 50.000 0.00 0.00 0.00 4.85
140 141 8.677300 ACATACATTTAACAGGCAGAACATAAG 58.323 33.333 0.00 0.00 0.00 1.73
142 143 9.325198 CTACATACATTTAACAGGCAGAACATA 57.675 33.333 0.00 0.00 0.00 2.29
151 152 7.273381 GCAAGCAAACTACATACATTTAACAGG 59.727 37.037 0.00 0.00 0.00 4.00
159 160 4.335416 ACCAGCAAGCAAACTACATACAT 58.665 39.130 0.00 0.00 0.00 2.29
168 169 2.555757 AGATTCTGACCAGCAAGCAAAC 59.444 45.455 0.00 0.00 0.00 2.93
171 172 1.072806 ACAGATTCTGACCAGCAAGCA 59.927 47.619 20.33 0.00 35.18 3.91
172 173 1.467734 CACAGATTCTGACCAGCAAGC 59.532 52.381 20.33 0.00 35.18 4.01
177 178 2.074576 CACAGCACAGATTCTGACCAG 58.925 52.381 20.33 9.29 35.18 4.00
195 196 1.746517 CCTCCGCCCTATGTACCAC 59.253 63.158 0.00 0.00 0.00 4.16
208 209 2.895424 AAACTGACAGGGGCCTCCG 61.895 63.158 0.00 0.00 41.52 4.63
215 216 2.224621 ACATCCACTCAAACTGACAGGG 60.225 50.000 7.51 0.00 0.00 4.45
221 222 3.131709 ACCAGACATCCACTCAAACTG 57.868 47.619 0.00 0.00 0.00 3.16
234 235 0.033601 AAGCACCACCAAACCAGACA 60.034 50.000 0.00 0.00 0.00 3.41
269 270 1.955778 CCAAGACACAAAGCCATGTCA 59.044 47.619 7.10 0.00 46.34 3.58
290 291 4.853668 AGTCGAAACTAGAGCCGGAGGT 62.854 54.545 5.05 0.00 42.42 3.85
295 296 0.802607 GCCAGTCGAAACTAGAGCCG 60.803 60.000 0.00 0.00 33.25 5.52
307 308 1.517257 GACCAGTCATCGCCAGTCG 60.517 63.158 0.00 0.00 40.15 4.18
308 309 1.517257 CGACCAGTCATCGCCAGTC 60.517 63.158 0.00 0.00 31.96 3.51
309 310 1.323271 ATCGACCAGTCATCGCCAGT 61.323 55.000 0.00 0.00 39.46 4.00
310 311 0.596083 GATCGACCAGTCATCGCCAG 60.596 60.000 0.00 0.00 39.46 4.85
311 312 1.037579 AGATCGACCAGTCATCGCCA 61.038 55.000 0.00 0.00 39.46 5.69
312 313 0.318275 GAGATCGACCAGTCATCGCC 60.318 60.000 0.00 0.00 39.46 5.54
313 314 0.658829 CGAGATCGACCAGTCATCGC 60.659 60.000 0.00 2.30 43.02 4.58
314 315 0.040870 CCGAGATCGACCAGTCATCG 60.041 60.000 3.31 2.41 43.02 3.84
315 316 0.318275 GCCGAGATCGACCAGTCATC 60.318 60.000 3.31 1.28 43.02 2.92
316 317 1.736586 GCCGAGATCGACCAGTCAT 59.263 57.895 3.31 0.00 43.02 3.06
367 368 5.473162 CACAAAATCTAACCACATGGAGTCA 59.527 40.000 4.53 0.00 38.94 3.41
373 374 4.789012 AGGCACAAAATCTAACCACATG 57.211 40.909 0.00 0.00 0.00 3.21
376 377 4.762251 AGAGAAGGCACAAAATCTAACCAC 59.238 41.667 0.00 0.00 0.00 4.16
383 384 4.579869 TGTCCTAGAGAAGGCACAAAATC 58.420 43.478 0.00 0.00 46.10 2.17
384 385 4.640771 TGTCCTAGAGAAGGCACAAAAT 57.359 40.909 0.00 0.00 46.10 1.82
386 387 3.840666 AGATGTCCTAGAGAAGGCACAAA 59.159 43.478 0.00 0.00 46.10 2.83
387 388 3.445008 AGATGTCCTAGAGAAGGCACAA 58.555 45.455 0.00 0.00 46.10 3.33
388 389 3.107402 AGATGTCCTAGAGAAGGCACA 57.893 47.619 0.00 0.00 46.10 4.57
389 390 3.005367 GCTAGATGTCCTAGAGAAGGCAC 59.995 52.174 0.00 0.00 46.17 5.01
391 392 2.227865 CGCTAGATGTCCTAGAGAAGGC 59.772 54.545 0.00 0.00 46.17 4.35
404 408 2.860735 CCCGAGAAGAAAACGCTAGATG 59.139 50.000 0.00 0.00 0.00 2.90
405 409 2.159085 CCCCGAGAAGAAAACGCTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
420 424 0.962356 AAGCAAATCACTGCCCCGAG 60.962 55.000 0.00 0.00 43.73 4.63
421 425 1.074775 AAGCAAATCACTGCCCCGA 59.925 52.632 0.00 0.00 43.73 5.14
422 426 1.213537 CAAGCAAATCACTGCCCCG 59.786 57.895 0.00 0.00 43.73 5.73
423 427 1.593265 CCAAGCAAATCACTGCCCC 59.407 57.895 0.00 0.00 43.73 5.80
430 434 4.505808 CAACCATAATGCCAAGCAAATCA 58.494 39.130 0.00 0.00 43.62 2.57
432 436 3.272581 GCAACCATAATGCCAAGCAAAT 58.727 40.909 0.00 0.00 43.62 2.32
446 450 5.452255 AGATCATAAGACATTGGCAACCAT 58.548 37.500 0.00 0.00 31.53 3.55
451 455 7.966812 AGTATGTAGATCATAAGACATTGGCA 58.033 34.615 0.00 0.00 40.21 4.92
452 456 8.839310 AAGTATGTAGATCATAAGACATTGGC 57.161 34.615 0.00 0.00 40.21 4.52
463 468 6.490381 TCGTGGCTAGAAAGTATGTAGATCAT 59.510 38.462 0.00 0.00 40.25 2.45
487 2543 5.224821 ACCCAGTAACTTGTAGAAAGGTC 57.775 43.478 0.00 0.00 0.00 3.85
488 2544 5.641789 AACCCAGTAACTTGTAGAAAGGT 57.358 39.130 0.00 0.00 0.00 3.50
504 2560 7.029563 GCATGAACTTATTGAAACTAACCCAG 58.970 38.462 0.00 0.00 0.00 4.45
525 2581 2.202987 GACCTCCGCCTCAGCATG 60.203 66.667 0.00 0.00 39.83 4.06
534 2590 3.760035 TCGCCTTCAGACCTCCGC 61.760 66.667 0.00 0.00 0.00 5.54
543 2599 0.459899 AGCATACGATGTCGCCTTCA 59.540 50.000 1.77 0.00 44.43 3.02
576 2632 4.505922 GTCTTCTTCCTTCTACATGCATCG 59.494 45.833 0.00 0.00 0.00 3.84
603 2659 3.458189 CACTCTATAAAGGGTGCCGAAG 58.542 50.000 0.00 0.00 46.93 3.79
619 2675 8.682936 AAATGTAAGATGTTTTCTGACACTCT 57.317 30.769 0.00 0.00 46.63 3.24
620 2676 9.173939 CAAAATGTAAGATGTTTTCTGACACTC 57.826 33.333 0.00 0.00 46.63 3.51
664 2720 9.758651 AAAACGCCTTTACAGAAATTAAAAGAT 57.241 25.926 0.00 0.00 31.96 2.40
692 2748 9.968870 CCATGTATTAAGTAGTAGAGACCTTTC 57.031 37.037 0.00 0.00 0.00 2.62
749 2809 4.205181 GCAGCGAAGAAAAGAAAAACAGAC 59.795 41.667 0.00 0.00 0.00 3.51
751 2811 3.178423 CGCAGCGAAGAAAAGAAAAACAG 59.822 43.478 9.98 0.00 0.00 3.16
763 2823 2.815211 GCACCATCGCAGCGAAGA 60.815 61.111 23.76 0.00 39.99 2.87
836 2921 2.586357 GATCGCTTCGGCACCTCC 60.586 66.667 0.00 0.00 41.88 4.30
850 2935 6.036517 GTGCTTTACATATGGATCCATCGATC 59.963 42.308 30.61 12.71 43.73 3.69
867 2952 0.881796 GACCAGCTTGGGTGCTTTAC 59.118 55.000 0.00 0.00 43.37 2.01
885 2970 3.138798 GTACGCTGGCTCTCCGGA 61.139 66.667 2.93 2.93 41.45 5.14
961 3048 2.822399 CGCACTGATCCCCCTACC 59.178 66.667 0.00 0.00 0.00 3.18
978 3065 2.585247 GATGCCGGTAGTGGTCGC 60.585 66.667 1.90 0.00 0.00 5.19
979 3066 2.278596 CGATGCCGGTAGTGGTCG 60.279 66.667 1.90 0.12 0.00 4.79
980 3067 1.226888 GTCGATGCCGGTAGTGGTC 60.227 63.158 1.90 0.00 36.24 4.02
983 3070 0.875908 CATGGTCGATGCCGGTAGTG 60.876 60.000 1.90 0.00 36.24 2.74
994 3091 2.362503 AGACTCCGGCATGGTCGA 60.363 61.111 0.00 0.00 39.52 4.20
1294 3417 3.196394 TTTGGCACGAACACGCGT 61.196 55.556 5.58 5.58 46.88 6.01
1304 3427 1.024579 ACCCATCGATCGTTTGGCAC 61.025 55.000 24.94 0.00 0.00 5.01
1319 3442 2.473768 TGGGAGAGCAATTGACCCA 58.526 52.632 20.89 20.89 46.74 4.51
1320 3443 3.297134 TTATGGGAGAGCAATTGACCC 57.703 47.619 10.34 15.05 40.79 4.46
1331 3454 3.258372 GTGCGTCAGGATATTATGGGAGA 59.742 47.826 0.00 0.00 0.00 3.71
1358 3485 1.300465 CAGTGCAGTGCAGAGACGT 60.300 57.895 20.42 0.00 40.08 4.34
1359 3486 2.665395 GCAGTGCAGTGCAGAGACG 61.665 63.158 35.84 6.43 43.41 4.18
1360 3487 3.251974 GCAGTGCAGTGCAGAGAC 58.748 61.111 35.84 6.70 43.41 3.36
1391 3518 4.547367 CCCTCCGGGCCGATGTTC 62.547 72.222 30.79 0.00 35.35 3.18
1454 3581 1.591863 GAGGGCCGTGCTTATCGTC 60.592 63.158 0.65 0.00 0.00 4.20
1611 3744 1.076192 ACGGATAGAAGGAGGCGGT 60.076 57.895 0.00 0.00 0.00 5.68
1757 3934 2.441378 CGTACGTGGTGCATCCGTG 61.441 63.158 19.54 8.69 39.52 4.94
1758 3935 1.940883 ATCGTACGTGGTGCATCCGT 61.941 55.000 16.05 15.96 39.52 4.69
1759 3936 0.804544 AATCGTACGTGGTGCATCCG 60.805 55.000 16.05 6.34 39.52 4.18
1760 3937 0.650512 CAATCGTACGTGGTGCATCC 59.349 55.000 16.05 0.00 0.00 3.51
1761 3938 1.323534 GACAATCGTACGTGGTGCATC 59.676 52.381 16.05 0.00 0.00 3.91
1779 3974 3.426568 GTGCTCTTGCTGGGCGAC 61.427 66.667 0.00 0.00 40.48 5.19
1873 4076 3.874543 ACAAGTAATCAAGACAACACGCA 59.125 39.130 0.00 0.00 0.00 5.24
1875 4078 6.043327 TCAACAAGTAATCAAGACAACACG 57.957 37.500 0.00 0.00 0.00 4.49
1988 5754 4.073293 AGTCACACAACTAAAGACCAGG 57.927 45.455 0.00 0.00 0.00 4.45
2056 5822 0.179073 AGCGTCACAGCTCACAACTT 60.179 50.000 0.00 0.00 45.67 2.66
2108 5875 3.762992 CGTGTGTGCGCGTTCGAT 61.763 61.111 8.43 0.00 42.94 3.59
2150 5917 6.942005 TCATCACAGGTTCTTGACACATTAAT 59.058 34.615 0.00 0.00 0.00 1.40
2151 5918 6.295249 TCATCACAGGTTCTTGACACATTAA 58.705 36.000 0.00 0.00 0.00 1.40
2153 5920 4.717877 TCATCACAGGTTCTTGACACATT 58.282 39.130 0.00 0.00 0.00 2.71
2154 5921 4.356405 TCATCACAGGTTCTTGACACAT 57.644 40.909 0.00 0.00 0.00 3.21
2166 5933 3.076621 TGCTTAGCTTGTTCATCACAGG 58.923 45.455 5.60 0.00 36.48 4.00
2179 5955 0.243907 TTCGTTCGCTCTGCTTAGCT 59.756 50.000 5.60 0.00 40.49 3.32
2188 5964 2.099633 TTTTTGCTGTTCGTTCGCTC 57.900 45.000 0.00 0.00 0.00 5.03
2229 6005 0.680618 TTTCCACCGCTTTACCGAGA 59.319 50.000 0.00 0.00 0.00 4.04
2230 6006 1.463444 CTTTTCCACCGCTTTACCGAG 59.537 52.381 0.00 0.00 0.00 4.63
2231 6007 1.515081 CTTTTCCACCGCTTTACCGA 58.485 50.000 0.00 0.00 0.00 4.69
2232 6008 0.109919 GCTTTTCCACCGCTTTACCG 60.110 55.000 0.00 0.00 0.00 4.02
2233 6009 0.242825 GGCTTTTCCACCGCTTTACC 59.757 55.000 0.00 0.00 34.01 2.85
2234 6010 1.068541 CAGGCTTTTCCACCGCTTTAC 60.069 52.381 0.00 0.00 37.29 2.01
2235 6011 1.243902 CAGGCTTTTCCACCGCTTTA 58.756 50.000 0.00 0.00 37.29 1.85
2236 6012 0.755327 ACAGGCTTTTCCACCGCTTT 60.755 50.000 0.00 0.00 37.29 3.51
2237 6013 0.755327 AACAGGCTTTTCCACCGCTT 60.755 50.000 0.00 0.00 37.29 4.68
2238 6014 1.152756 AACAGGCTTTTCCACCGCT 60.153 52.632 0.00 0.00 37.29 5.52
2239 6015 1.172812 AGAACAGGCTTTTCCACCGC 61.173 55.000 9.68 0.00 37.29 5.68
2240 6016 0.875059 GAGAACAGGCTTTTCCACCG 59.125 55.000 9.68 0.00 37.29 4.94
2241 6017 0.875059 CGAGAACAGGCTTTTCCACC 59.125 55.000 9.68 0.00 37.29 4.61
2242 6018 0.875059 CCGAGAACAGGCTTTTCCAC 59.125 55.000 9.68 4.35 37.29 4.02
2243 6019 0.472471 ACCGAGAACAGGCTTTTCCA 59.528 50.000 9.68 0.00 37.29 3.53
2244 6020 2.467566 TACCGAGAACAGGCTTTTCC 57.532 50.000 9.68 1.55 0.00 3.13
2245 6021 6.759827 TGTATATTACCGAGAACAGGCTTTTC 59.240 38.462 5.24 5.24 0.00 2.29
2246 6022 6.537660 GTGTATATTACCGAGAACAGGCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
2247 6023 6.047231 GTGTATATTACCGAGAACAGGCTTT 58.953 40.000 0.00 0.00 0.00 3.51
2248 6024 5.598769 GTGTATATTACCGAGAACAGGCTT 58.401 41.667 0.00 0.00 0.00 4.35
2249 6025 4.261489 CGTGTATATTACCGAGAACAGGCT 60.261 45.833 0.00 0.00 0.00 4.58
2250 6026 3.979495 CGTGTATATTACCGAGAACAGGC 59.021 47.826 0.00 0.00 0.00 4.85
2251 6027 4.974275 CACGTGTATATTACCGAGAACAGG 59.026 45.833 7.58 0.00 0.00 4.00
2252 6028 4.440103 GCACGTGTATATTACCGAGAACAG 59.560 45.833 18.38 0.00 0.00 3.16
2253 6029 4.353737 GCACGTGTATATTACCGAGAACA 58.646 43.478 18.38 0.00 0.00 3.18
2254 6030 3.732721 GGCACGTGTATATTACCGAGAAC 59.267 47.826 18.38 0.00 0.00 3.01
2255 6031 3.633525 AGGCACGTGTATATTACCGAGAA 59.366 43.478 18.38 0.00 0.00 2.87
2256 6032 3.216800 AGGCACGTGTATATTACCGAGA 58.783 45.455 18.38 0.00 0.00 4.04
2257 6033 3.637998 AGGCACGTGTATATTACCGAG 57.362 47.619 18.38 0.00 0.00 4.63
2258 6034 3.708890 CAAGGCACGTGTATATTACCGA 58.291 45.455 18.38 0.00 31.96 4.69
2259 6035 2.220133 GCAAGGCACGTGTATATTACCG 59.780 50.000 18.38 0.00 40.70 4.02
2260 6036 3.463944 AGCAAGGCACGTGTATATTACC 58.536 45.455 18.38 7.73 40.70 2.85
2261 6037 3.493503 GGAGCAAGGCACGTGTATATTAC 59.506 47.826 18.38 4.77 40.70 1.89
2262 6038 3.724374 GGAGCAAGGCACGTGTATATTA 58.276 45.455 18.38 0.00 40.70 0.98
2263 6039 2.561569 GGAGCAAGGCACGTGTATATT 58.438 47.619 18.38 4.22 40.70 1.28
2272 6048 2.280797 TGTCACGGAGCAAGGCAC 60.281 61.111 0.00 0.00 0.00 5.01
2275 6051 2.031012 TGCTGTCACGGAGCAAGG 59.969 61.111 0.00 0.00 43.47 3.61
2295 6071 1.956170 GGTATGGCTGGATCGTGCG 60.956 63.158 3.11 0.00 0.00 5.34
2299 6075 0.250467 CCAAGGGTATGGCTGGATCG 60.250 60.000 0.00 0.00 32.78 3.69
2300 6076 0.846693 ACCAAGGGTATGGCTGGATC 59.153 55.000 0.00 0.00 44.75 3.36
2301 6077 0.552848 CACCAAGGGTATGGCTGGAT 59.447 55.000 0.00 0.00 44.75 3.41
2302 6078 1.998530 CACCAAGGGTATGGCTGGA 59.001 57.895 0.00 0.00 44.75 3.86
2303 6079 1.754234 GCACCAAGGGTATGGCTGG 60.754 63.158 0.00 0.00 44.75 4.85
2305 6081 2.683475 GGCACCAAGGGTATGGCT 59.317 61.111 0.00 0.00 44.75 4.75
2307 6083 1.001393 AACGGCACCAAGGGTATGG 60.001 57.895 0.00 0.00 46.38 2.74
2308 6084 1.312371 CCAACGGCACCAAGGGTATG 61.312 60.000 0.00 0.00 32.11 2.39
2309 6085 1.001393 CCAACGGCACCAAGGGTAT 60.001 57.895 0.00 0.00 32.11 2.73
2310 6086 2.432563 CCAACGGCACCAAGGGTA 59.567 61.111 0.00 0.00 32.11 3.69
2326 6102 0.939106 GCAAACGTGTTGGTGATGCC 60.939 55.000 10.89 0.00 37.90 4.40
2355 6207 7.516627 CGCTCTATTGTTTTTGGAAAACCTTTG 60.517 37.037 12.25 3.55 0.00 2.77
2358 6210 5.528870 CGCTCTATTGTTTTTGGAAAACCT 58.471 37.500 12.25 4.51 0.00 3.50
2360 6212 4.149922 GGCGCTCTATTGTTTTTGGAAAAC 59.850 41.667 7.64 8.85 0.00 2.43
2363 6215 2.887783 TGGCGCTCTATTGTTTTTGGAA 59.112 40.909 7.64 0.00 0.00 3.53
2364 6216 2.509569 TGGCGCTCTATTGTTTTTGGA 58.490 42.857 7.64 0.00 0.00 3.53
2366 6218 3.914364 GTCTTGGCGCTCTATTGTTTTTG 59.086 43.478 7.64 0.00 0.00 2.44
2368 6220 2.159627 CGTCTTGGCGCTCTATTGTTTT 59.840 45.455 7.64 0.00 0.00 2.43
2369 6221 1.732259 CGTCTTGGCGCTCTATTGTTT 59.268 47.619 7.64 0.00 0.00 2.83
2371 6223 0.246635 ACGTCTTGGCGCTCTATTGT 59.753 50.000 7.64 0.00 34.88 2.71
2374 6226 0.458543 CACACGTCTTGGCGCTCTAT 60.459 55.000 7.64 0.00 34.88 1.98
2375 6227 1.080772 CACACGTCTTGGCGCTCTA 60.081 57.895 7.64 0.00 34.88 2.43
2376 6228 2.356313 CACACGTCTTGGCGCTCT 60.356 61.111 7.64 0.00 34.88 4.09
2377 6229 4.077188 GCACACGTCTTGGCGCTC 62.077 66.667 7.64 0.00 34.88 5.03
2381 6233 4.012895 CACCGCACACGTCTTGGC 62.013 66.667 0.00 0.00 37.70 4.52
2382 6234 1.885388 TTCACCGCACACGTCTTGG 60.885 57.895 0.00 0.00 37.70 3.61
2383 6235 1.275657 GTTCACCGCACACGTCTTG 59.724 57.895 0.00 0.00 37.70 3.02
2384 6236 1.885850 GGTTCACCGCACACGTCTT 60.886 57.895 0.00 0.00 37.70 3.01
2385 6237 2.279918 GGTTCACCGCACACGTCT 60.280 61.111 0.00 0.00 37.70 4.18
2394 6246 0.609131 AATTGCTCCTGGGTTCACCG 60.609 55.000 0.00 0.00 44.64 4.94
2396 6248 1.270550 CACAATTGCTCCTGGGTTCAC 59.729 52.381 5.05 0.00 0.00 3.18
2403 6255 1.938016 GCTTTGCCACAATTGCTCCTG 60.938 52.381 5.05 0.00 0.00 3.86
2407 6259 1.134461 TGTTGCTTTGCCACAATTGCT 60.134 42.857 5.05 0.00 31.36 3.91
2425 6277 2.161030 GGAGAGAGACGTACCTGTTGT 58.839 52.381 0.00 0.00 0.00 3.32
2432 6284 8.022550 GCTTTATTATTAGGGAGAGAGACGTAC 58.977 40.741 0.00 0.00 0.00 3.67
2433 6285 7.722728 TGCTTTATTATTAGGGAGAGAGACGTA 59.277 37.037 0.00 0.00 0.00 3.57
2434 6286 6.550108 TGCTTTATTATTAGGGAGAGAGACGT 59.450 38.462 0.00 0.00 0.00 4.34
2435 6287 6.864165 GTGCTTTATTATTAGGGAGAGAGACG 59.136 42.308 0.00 0.00 0.00 4.18
2436 6288 6.864165 CGTGCTTTATTATTAGGGAGAGAGAC 59.136 42.308 0.00 0.00 0.00 3.36
2437 6289 6.015350 CCGTGCTTTATTATTAGGGAGAGAGA 60.015 42.308 0.00 0.00 0.00 3.10
2438 6290 6.159988 CCGTGCTTTATTATTAGGGAGAGAG 58.840 44.000 0.00 0.00 0.00 3.20
2439 6291 5.011738 CCCGTGCTTTATTATTAGGGAGAGA 59.988 44.000 0.00 0.00 39.95 3.10
2440 6292 5.221661 ACCCGTGCTTTATTATTAGGGAGAG 60.222 44.000 4.00 0.00 39.95 3.20
2441 6293 4.657039 ACCCGTGCTTTATTATTAGGGAGA 59.343 41.667 4.00 0.00 39.95 3.71
2442 6294 4.969484 ACCCGTGCTTTATTATTAGGGAG 58.031 43.478 4.00 0.00 39.95 4.30
2443 6295 5.104444 TCAACCCGTGCTTTATTATTAGGGA 60.104 40.000 4.00 0.00 39.95 4.20
2444 6296 5.127491 TCAACCCGTGCTTTATTATTAGGG 58.873 41.667 0.00 0.00 43.03 3.53
2445 6297 5.820947 ACTCAACCCGTGCTTTATTATTAGG 59.179 40.000 0.00 0.00 0.00 2.69
2446 6298 6.292168 CGACTCAACCCGTGCTTTATTATTAG 60.292 42.308 0.00 0.00 0.00 1.73
2447 6299 5.521010 CGACTCAACCCGTGCTTTATTATTA 59.479 40.000 0.00 0.00 0.00 0.98
2448 6300 4.331717 CGACTCAACCCGTGCTTTATTATT 59.668 41.667 0.00 0.00 0.00 1.40
2449 6301 3.869246 CGACTCAACCCGTGCTTTATTAT 59.131 43.478 0.00 0.00 0.00 1.28
2450 6302 3.255725 CGACTCAACCCGTGCTTTATTA 58.744 45.455 0.00 0.00 0.00 0.98
2451 6303 2.073816 CGACTCAACCCGTGCTTTATT 58.926 47.619 0.00 0.00 0.00 1.40
2452 6304 1.674817 CCGACTCAACCCGTGCTTTAT 60.675 52.381 0.00 0.00 0.00 1.40
2453 6305 0.320073 CCGACTCAACCCGTGCTTTA 60.320 55.000 0.00 0.00 0.00 1.85
2454 6306 1.597027 CCGACTCAACCCGTGCTTT 60.597 57.895 0.00 0.00 0.00 3.51
2455 6307 2.030562 CCGACTCAACCCGTGCTT 59.969 61.111 0.00 0.00 0.00 3.91
2456 6308 4.681978 GCCGACTCAACCCGTGCT 62.682 66.667 0.00 0.00 0.00 4.40
2458 6310 2.642254 TAGGCCGACTCAACCCGTG 61.642 63.158 0.00 0.00 0.00 4.94
2459 6311 2.283388 TAGGCCGACTCAACCCGT 60.283 61.111 0.00 0.00 0.00 5.28
2460 6312 2.183555 GTAGGCCGACTCAACCCG 59.816 66.667 9.01 0.00 0.00 5.28
2461 6313 2.183555 CGTAGGCCGACTCAACCC 59.816 66.667 14.49 0.00 39.56 4.11
2462 6314 2.183555 CCGTAGGCCGACTCAACC 59.816 66.667 14.49 0.00 46.14 3.77
2474 6326 2.516923 CCGCTATTCTAATCGCCGTAG 58.483 52.381 0.00 0.00 0.00 3.51
2475 6327 1.200716 CCCGCTATTCTAATCGCCGTA 59.799 52.381 0.00 0.00 0.00 4.02
2476 6328 0.038526 CCCGCTATTCTAATCGCCGT 60.039 55.000 0.00 0.00 0.00 5.68
2477 6329 0.038526 ACCCGCTATTCTAATCGCCG 60.039 55.000 0.00 0.00 0.00 6.46
2478 6330 2.165319 AACCCGCTATTCTAATCGCC 57.835 50.000 0.00 0.00 0.00 5.54
2479 6331 3.558418 TCAAAACCCGCTATTCTAATCGC 59.442 43.478 0.00 0.00 0.00 4.58
2480 6332 4.025145 GGTCAAAACCCGCTATTCTAATCG 60.025 45.833 0.00 0.00 39.93 3.34
2481 6333 4.025145 CGGTCAAAACCCGCTATTCTAATC 60.025 45.833 0.00 0.00 43.21 1.75
2482 6334 3.875134 CGGTCAAAACCCGCTATTCTAAT 59.125 43.478 0.00 0.00 43.21 1.73
2483 6335 3.264104 CGGTCAAAACCCGCTATTCTAA 58.736 45.455 0.00 0.00 43.21 2.10
2484 6336 2.896168 CGGTCAAAACCCGCTATTCTA 58.104 47.619 0.00 0.00 43.21 2.10
2485 6337 1.734163 CGGTCAAAACCCGCTATTCT 58.266 50.000 0.00 0.00 43.21 2.40
2519 6371 4.778143 ACAGGATCAACGGCCGCC 62.778 66.667 28.58 18.51 0.00 6.13
2520 6372 3.499737 CACAGGATCAACGGCCGC 61.500 66.667 28.58 8.35 0.00 6.53
2521 6373 0.390603 TAACACAGGATCAACGGCCG 60.391 55.000 26.86 26.86 0.00 6.13
2522 6374 1.084289 GTAACACAGGATCAACGGCC 58.916 55.000 0.00 0.00 0.00 6.13
2523 6375 1.732259 CTGTAACACAGGATCAACGGC 59.268 52.381 0.00 0.00 42.35 5.68
2533 6385 1.271325 TGCCCATGACCTGTAACACAG 60.271 52.381 0.00 0.00 45.53 3.66
2534 6386 0.767998 TGCCCATGACCTGTAACACA 59.232 50.000 0.00 0.00 0.00 3.72
2535 6387 2.017049 GATGCCCATGACCTGTAACAC 58.983 52.381 0.00 0.00 0.00 3.32
2536 6388 1.915489 AGATGCCCATGACCTGTAACA 59.085 47.619 0.00 0.00 0.00 2.41
2537 6389 2.717639 AGATGCCCATGACCTGTAAC 57.282 50.000 0.00 0.00 0.00 2.50
2538 6390 2.575735 TGAAGATGCCCATGACCTGTAA 59.424 45.455 0.00 0.00 0.00 2.41
2539 6391 2.195727 TGAAGATGCCCATGACCTGTA 58.804 47.619 0.00 0.00 0.00 2.74
2540 6392 0.994247 TGAAGATGCCCATGACCTGT 59.006 50.000 0.00 0.00 0.00 4.00
2541 6393 1.954382 CATGAAGATGCCCATGACCTG 59.046 52.381 0.00 0.00 41.88 4.00
2542 6394 2.359981 CATGAAGATGCCCATGACCT 57.640 50.000 0.00 0.00 41.88 3.85
2552 6404 9.181805 GATCATCAAAGTAATTGCATGAAGATG 57.818 33.333 17.85 12.77 38.19 2.90
2553 6405 9.132923 AGATCATCAAAGTAATTGCATGAAGAT 57.867 29.630 14.90 14.90 38.19 2.40
2554 6406 8.403236 CAGATCATCAAAGTAATTGCATGAAGA 58.597 33.333 0.00 8.75 38.19 2.87
2555 6407 8.403236 TCAGATCATCAAAGTAATTGCATGAAG 58.597 33.333 0.00 3.21 38.19 3.02
2556 6408 8.186163 GTCAGATCATCAAAGTAATTGCATGAA 58.814 33.333 0.00 0.00 38.19 2.57
2557 6409 7.466320 CGTCAGATCATCAAAGTAATTGCATGA 60.466 37.037 0.00 4.91 38.61 3.07
2558 6410 6.631636 CGTCAGATCATCAAAGTAATTGCATG 59.368 38.462 0.00 0.00 38.98 4.06
2559 6411 6.539826 TCGTCAGATCATCAAAGTAATTGCAT 59.460 34.615 0.00 0.00 38.98 3.96
2560 6412 5.874261 TCGTCAGATCATCAAAGTAATTGCA 59.126 36.000 0.00 0.00 38.98 4.08
2561 6413 6.256539 TCTCGTCAGATCATCAAAGTAATTGC 59.743 38.462 0.00 0.00 38.98 3.56
2562 6414 7.704047 TCTCTCGTCAGATCATCAAAGTAATTG 59.296 37.037 0.00 0.00 40.58 2.32
2563 6415 7.776107 TCTCTCGTCAGATCATCAAAGTAATT 58.224 34.615 0.00 0.00 0.00 1.40
2564 6416 7.340122 TCTCTCGTCAGATCATCAAAGTAAT 57.660 36.000 0.00 0.00 0.00 1.89
2565 6417 6.759497 TCTCTCGTCAGATCATCAAAGTAA 57.241 37.500 0.00 0.00 0.00 2.24
2566 6418 6.183360 CCTTCTCTCGTCAGATCATCAAAGTA 60.183 42.308 0.00 0.00 0.00 2.24
2567 6419 5.394005 CCTTCTCTCGTCAGATCATCAAAGT 60.394 44.000 0.00 0.00 0.00 2.66
2568 6420 5.042593 CCTTCTCTCGTCAGATCATCAAAG 58.957 45.833 0.00 0.00 0.00 2.77
2569 6421 4.706962 TCCTTCTCTCGTCAGATCATCAAA 59.293 41.667 0.00 0.00 0.00 2.69
2570 6422 4.273318 TCCTTCTCTCGTCAGATCATCAA 58.727 43.478 0.00 0.00 0.00 2.57
2571 6423 3.882288 CTCCTTCTCTCGTCAGATCATCA 59.118 47.826 0.00 0.00 0.00 3.07
2572 6424 4.024048 GTCTCCTTCTCTCGTCAGATCATC 60.024 50.000 0.00 0.00 0.00 2.92
2573 6425 3.882888 GTCTCCTTCTCTCGTCAGATCAT 59.117 47.826 0.00 0.00 0.00 2.45
2574 6426 3.275143 GTCTCCTTCTCTCGTCAGATCA 58.725 50.000 0.00 0.00 0.00 2.92
2575 6427 2.286833 CGTCTCCTTCTCTCGTCAGATC 59.713 54.545 0.00 0.00 0.00 2.75
2576 6428 2.285083 CGTCTCCTTCTCTCGTCAGAT 58.715 52.381 0.00 0.00 0.00 2.90
2577 6429 1.002201 ACGTCTCCTTCTCTCGTCAGA 59.998 52.381 0.00 0.00 0.00 3.27
2578 6430 1.129624 CACGTCTCCTTCTCTCGTCAG 59.870 57.143 0.00 0.00 32.47 3.51
2579 6431 1.157585 CACGTCTCCTTCTCTCGTCA 58.842 55.000 0.00 0.00 32.47 4.35
2580 6432 1.440708 TCACGTCTCCTTCTCTCGTC 58.559 55.000 0.00 0.00 32.47 4.20
2581 6433 1.740585 CATCACGTCTCCTTCTCTCGT 59.259 52.381 0.00 0.00 35.12 4.18
2582 6434 1.532921 GCATCACGTCTCCTTCTCTCG 60.533 57.143 0.00 0.00 0.00 4.04
2583 6435 1.532921 CGCATCACGTCTCCTTCTCTC 60.533 57.143 0.00 0.00 36.87 3.20
2584 6436 0.453793 CGCATCACGTCTCCTTCTCT 59.546 55.000 0.00 0.00 36.87 3.10
2585 6437 2.950877 CGCATCACGTCTCCTTCTC 58.049 57.895 0.00 0.00 36.87 2.87
2601 6453 0.452987 ACACATCCATGCATGAACGC 59.547 50.000 28.31 0.00 0.00 4.84
2602 6454 2.521996 CAACACATCCATGCATGAACG 58.478 47.619 28.31 16.50 0.00 3.95
2603 6455 2.094390 AGCAACACATCCATGCATGAAC 60.094 45.455 28.31 6.07 42.45 3.18
2604 6456 2.164827 GAGCAACACATCCATGCATGAA 59.835 45.455 28.31 8.59 42.45 2.57
2605 6457 1.746787 GAGCAACACATCCATGCATGA 59.253 47.619 28.31 14.16 42.45 3.07
2606 6458 1.202371 GGAGCAACACATCCATGCATG 60.202 52.381 20.19 20.19 42.45 4.06
2607 6459 1.108776 GGAGCAACACATCCATGCAT 58.891 50.000 0.00 0.00 42.45 3.96
2608 6460 0.966875 GGGAGCAACACATCCATGCA 60.967 55.000 0.00 0.00 42.45 3.96
2609 6461 1.811860 GGGAGCAACACATCCATGC 59.188 57.895 0.00 0.00 37.33 4.06
2610 6462 1.378882 CCGGGAGCAACACATCCATG 61.379 60.000 0.00 0.00 37.33 3.66
2611 6463 1.077501 CCGGGAGCAACACATCCAT 60.078 57.895 0.00 0.00 37.33 3.41
2612 6464 2.350895 CCGGGAGCAACACATCCA 59.649 61.111 0.00 0.00 37.33 3.41
2613 6465 3.134127 GCCGGGAGCAACACATCC 61.134 66.667 2.18 0.00 42.97 3.51
2625 6477 4.473520 ATCAACGCCTCAGCCGGG 62.474 66.667 2.18 0.00 34.57 5.73
2626 6478 3.197790 CATCAACGCCTCAGCCGG 61.198 66.667 0.00 0.00 34.57 6.13
2627 6479 3.869272 GCATCAACGCCTCAGCCG 61.869 66.667 0.00 0.00 34.57 5.52
2628 6480 2.747460 TGCATCAACGCCTCAGCC 60.747 61.111 0.00 0.00 34.57 4.85
2629 6481 2.037136 ACTGCATCAACGCCTCAGC 61.037 57.895 0.00 0.00 0.00 4.26
2630 6482 0.952497 ACACTGCATCAACGCCTCAG 60.952 55.000 0.00 0.00 0.00 3.35
2631 6483 0.534877 AACACTGCATCAACGCCTCA 60.535 50.000 0.00 0.00 0.00 3.86
2632 6484 0.166814 GAACACTGCATCAACGCCTC 59.833 55.000 0.00 0.00 0.00 4.70
2633 6485 1.237285 GGAACACTGCATCAACGCCT 61.237 55.000 0.00 0.00 0.00 5.52
2634 6486 1.210155 GGAACACTGCATCAACGCC 59.790 57.895 0.00 0.00 0.00 5.68
2635 6487 1.394917 CTAGGAACACTGCATCAACGC 59.605 52.381 0.00 0.00 0.00 4.84
2636 6488 1.394917 GCTAGGAACACTGCATCAACG 59.605 52.381 0.00 0.00 0.00 4.10
2637 6489 2.704572 AGCTAGGAACACTGCATCAAC 58.295 47.619 0.00 0.00 0.00 3.18
2638 6490 3.260632 TGTAGCTAGGAACACTGCATCAA 59.739 43.478 0.00 0.00 0.00 2.57
2639 6491 2.831526 TGTAGCTAGGAACACTGCATCA 59.168 45.455 0.00 0.00 0.00 3.07
2640 6492 3.452474 CTGTAGCTAGGAACACTGCATC 58.548 50.000 0.00 0.00 0.00 3.91
2641 6493 2.419297 GCTGTAGCTAGGAACACTGCAT 60.419 50.000 8.53 0.00 36.30 3.96
2642 6494 1.066858 GCTGTAGCTAGGAACACTGCA 60.067 52.381 8.53 0.00 36.30 4.41
2643 6495 1.646189 GCTGTAGCTAGGAACACTGC 58.354 55.000 0.00 0.00 38.21 4.40
2644 6496 1.827969 AGGCTGTAGCTAGGAACACTG 59.172 52.381 3.63 0.00 41.70 3.66
2645 6497 2.239681 AGGCTGTAGCTAGGAACACT 57.760 50.000 3.63 0.00 41.70 3.55
2646 6498 3.067040 GTCTAGGCTGTAGCTAGGAACAC 59.933 52.174 0.00 0.00 41.70 3.32
2647 6499 3.288964 GTCTAGGCTGTAGCTAGGAACA 58.711 50.000 0.00 0.00 41.70 3.18
2648 6500 2.291190 CGTCTAGGCTGTAGCTAGGAAC 59.709 54.545 0.00 0.00 41.70 3.62
2649 6501 2.573369 CGTCTAGGCTGTAGCTAGGAA 58.427 52.381 0.00 0.00 41.70 3.36
2650 6502 1.814634 GCGTCTAGGCTGTAGCTAGGA 60.815 57.143 0.00 0.00 41.70 2.94
2651 6503 0.594110 GCGTCTAGGCTGTAGCTAGG 59.406 60.000 0.00 0.00 41.70 3.02
2652 6504 1.600023 AGCGTCTAGGCTGTAGCTAG 58.400 55.000 0.00 4.38 42.86 3.42
2653 6505 3.802862 AGCGTCTAGGCTGTAGCTA 57.197 52.632 0.00 0.00 42.86 3.32
2654 6506 4.668151 AGCGTCTAGGCTGTAGCT 57.332 55.556 0.00 0.00 42.86 3.32
2660 6512 1.403814 TTATCAGCAGCGTCTAGGCT 58.596 50.000 0.00 0.00 46.13 4.58
2661 6513 2.064762 CATTATCAGCAGCGTCTAGGC 58.935 52.381 0.00 0.00 0.00 3.93
2662 6514 2.064762 GCATTATCAGCAGCGTCTAGG 58.935 52.381 0.00 0.00 0.00 3.02
2663 6515 1.718178 CGCATTATCAGCAGCGTCTAG 59.282 52.381 0.00 0.00 44.67 2.43
2664 6516 1.770957 CGCATTATCAGCAGCGTCTA 58.229 50.000 0.00 0.00 44.67 2.59
2665 6517 2.598045 CGCATTATCAGCAGCGTCT 58.402 52.632 0.00 0.00 44.67 4.18
2669 6521 0.379669 AGCAACGCATTATCAGCAGC 59.620 50.000 0.00 0.00 0.00 5.25
2670 6522 1.003116 GGAGCAACGCATTATCAGCAG 60.003 52.381 0.00 0.00 0.00 4.24
2671 6523 1.016627 GGAGCAACGCATTATCAGCA 58.983 50.000 0.00 0.00 0.00 4.41
2672 6524 0.308993 GGGAGCAACGCATTATCAGC 59.691 55.000 0.00 0.00 0.00 4.26
2673 6525 0.583438 CGGGAGCAACGCATTATCAG 59.417 55.000 0.00 0.00 0.00 2.90
2674 6526 0.813610 CCGGGAGCAACGCATTATCA 60.814 55.000 0.00 0.00 0.00 2.15
2675 6527 1.941812 CCGGGAGCAACGCATTATC 59.058 57.895 0.00 0.00 0.00 1.75
2676 6528 2.186826 GCCGGGAGCAACGCATTAT 61.187 57.895 2.18 0.00 42.97 1.28
2677 6529 2.822255 GCCGGGAGCAACGCATTA 60.822 61.111 2.18 0.00 42.97 1.90
2683 6535 3.733960 GAAACGGCCGGGAGCAAC 61.734 66.667 31.76 9.41 46.50 4.17
2684 6536 3.776347 TTGAAACGGCCGGGAGCAA 62.776 57.895 31.76 23.09 46.50 3.91
2685 6537 3.776347 TTTGAAACGGCCGGGAGCA 62.776 57.895 31.76 18.54 46.50 4.26
2686 6538 2.978018 CTTTGAAACGGCCGGGAGC 61.978 63.158 31.76 16.00 42.60 4.70
2687 6539 2.332654 CCTTTGAAACGGCCGGGAG 61.333 63.158 31.76 16.13 0.00 4.30
2688 6540 2.132089 ATCCTTTGAAACGGCCGGGA 62.132 55.000 31.76 23.87 0.00 5.14
2689 6541 1.248101 AATCCTTTGAAACGGCCGGG 61.248 55.000 31.76 19.05 0.00 5.73
2690 6542 0.601057 AAATCCTTTGAAACGGCCGG 59.399 50.000 31.76 11.88 0.00 6.13
2691 6543 1.268352 TCAAATCCTTTGAAACGGCCG 59.732 47.619 26.86 26.86 45.94 6.13
2699 6551 0.881118 GCAGCCGTCAAATCCTTTGA 59.119 50.000 0.00 0.00 46.68 2.69
2700 6552 0.454957 CGCAGCCGTCAAATCCTTTG 60.455 55.000 0.00 0.00 41.96 2.77
2701 6553 0.889186 ACGCAGCCGTCAAATCCTTT 60.889 50.000 0.00 0.00 46.39 3.11
2702 6554 1.302511 ACGCAGCCGTCAAATCCTT 60.303 52.632 0.00 0.00 46.39 3.36
2703 6555 2.347490 ACGCAGCCGTCAAATCCT 59.653 55.556 0.00 0.00 46.39 3.24
2719 6571 0.949105 AGCGATGGGACGTGAACAAC 60.949 55.000 0.00 0.00 35.59 3.32
2720 6572 0.669318 GAGCGATGGGACGTGAACAA 60.669 55.000 0.00 0.00 35.59 2.83
2721 6573 1.080093 GAGCGATGGGACGTGAACA 60.080 57.895 0.00 0.00 35.59 3.18
2722 6574 2.158959 CGAGCGATGGGACGTGAAC 61.159 63.158 0.00 0.00 35.59 3.18
2723 6575 2.180769 CGAGCGATGGGACGTGAA 59.819 61.111 0.00 0.00 35.59 3.18
2724 6576 4.492160 GCGAGCGATGGGACGTGA 62.492 66.667 0.00 0.00 35.59 4.35
2725 6577 4.498520 AGCGAGCGATGGGACGTG 62.499 66.667 0.00 0.00 35.59 4.49
2726 6578 4.194720 GAGCGAGCGATGGGACGT 62.195 66.667 0.00 0.00 35.59 4.34
2727 6579 3.893763 AGAGCGAGCGATGGGACG 61.894 66.667 0.00 0.00 0.00 4.79
2728 6580 2.279120 CAGAGCGAGCGATGGGAC 60.279 66.667 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.