Multiple sequence alignment - TraesCS6D01G264400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G264400 chr6D 100.000 2676 0 0 1 2676 372951975 372949300 0.000000e+00 4942.0
1 TraesCS6D01G264400 chr6D 87.500 424 35 4 822 1243 373049534 373049127 8.670000e-130 473.0
2 TraesCS6D01G264400 chr6D 86.486 370 44 4 1296 1665 373392023 373391660 4.150000e-108 401.0
3 TraesCS6D01G264400 chr6D 85.965 342 40 7 908 1243 373418603 373418264 2.530000e-95 359.0
4 TraesCS6D01G264400 chr6D 83.081 396 54 12 854 1240 373392514 373392123 5.480000e-92 348.0
5 TraesCS6D01G264400 chr6D 79.097 421 61 16 1261 1663 373279799 373279388 5.680000e-67 265.0
6 TraesCS6D01G264400 chr6D 93.151 146 10 0 2334 2479 372956494 372956349 5.800000e-52 215.0
7 TraesCS6D01G264400 chr6D 94.203 138 8 0 2014 2151 372958676 372958539 7.510000e-51 211.0
8 TraesCS6D01G264400 chr6D 83.243 185 15 7 2136 2313 372956771 372956596 3.570000e-34 156.0
9 TraesCS6D01G264400 chr6D 89.720 107 8 1 1291 1394 373045670 373045564 1.670000e-27 134.0
10 TraesCS6D01G264400 chr6D 87.755 98 9 3 1878 1974 196357993 196357898 7.830000e-21 111.0
11 TraesCS6D01G264400 chr6D 100.000 29 0 0 2029 2057 373279208 373279180 1.000000e-03 54.7
12 TraesCS6D01G264400 chr6A 95.519 781 27 3 1 774 515057550 515056771 0.000000e+00 1242.0
13 TraesCS6D01G264400 chr6A 92.000 625 32 7 1261 1874 515034600 515033983 0.000000e+00 861.0
14 TraesCS6D01G264400 chr6A 95.789 475 19 1 769 1243 515035144 515034671 0.000000e+00 765.0
15 TraesCS6D01G264400 chr6A 90.331 362 14 6 2333 2676 515032400 515032042 3.140000e-124 455.0
16 TraesCS6D01G264400 chr6A 85.445 371 46 6 1296 1665 515643739 515643376 1.940000e-101 379.0
17 TraesCS6D01G264400 chr6A 86.711 301 36 4 943 1240 515644142 515643843 5.520000e-87 331.0
18 TraesCS6D01G264400 chr6A 89.615 260 19 4 2014 2273 515064797 515064546 9.240000e-85 324.0
19 TraesCS6D01G264400 chr6A 89.960 249 25 0 995 1243 515665722 515665474 3.320000e-84 322.0
20 TraesCS6D01G264400 chr6A 93.204 206 10 1 2016 2217 515032656 515032451 1.560000e-77 300.0
21 TraesCS6D01G264400 chr6A 92.357 157 11 1 2334 2489 515060305 515060149 3.470000e-54 222.0
22 TraesCS6D01G264400 chr6A 91.935 62 4 1 1963 2024 515032923 515032863 4.750000e-13 86.1
23 TraesCS6D01G264400 chr6B 91.125 800 53 10 456 1243 558733212 558734005 0.000000e+00 1068.0
24 TraesCS6D01G264400 chr6B 90.875 800 53 12 456 1243 558815809 558816600 0.000000e+00 1055.0
25 TraesCS6D01G264400 chr6B 90.976 543 32 6 1261 1795 558816682 558817215 0.000000e+00 715.0
26 TraesCS6D01G264400 chr6B 90.608 543 34 6 1261 1795 558734087 558734620 0.000000e+00 704.0
27 TraesCS6D01G264400 chr6B 94.725 455 13 1 1 455 558732736 558733179 0.000000e+00 697.0
28 TraesCS6D01G264400 chr6B 94.286 455 15 1 1 455 558815333 558815776 0.000000e+00 686.0
29 TraesCS6D01G264400 chr6B 90.769 325 22 5 2304 2628 558926009 558926325 6.850000e-116 427.0
30 TraesCS6D01G264400 chr6B 86.096 374 44 6 1293 1665 561043587 561043953 1.930000e-106 396.0
31 TraesCS6D01G264400 chr6B 91.765 255 21 0 989 1243 561146400 561146146 3.280000e-94 355.0
32 TraesCS6D01G264400 chr6B 85.260 346 36 6 1323 1662 561145992 561145656 2.550000e-90 342.0
33 TraesCS6D01G264400 chr6B 82.804 378 46 10 1276 1649 561005316 561004954 1.200000e-83 320.0
34 TraesCS6D01G264400 chr6B 88.732 142 11 4 1970 2111 558911079 558911215 4.580000e-38 169.0
35 TraesCS6D01G264400 chr6B 97.531 81 2 0 1795 1875 558910985 558911065 3.590000e-29 139.0
36 TraesCS6D01G264400 chrUn 89.750 800 49 13 456 1243 459911810 459912588 0.000000e+00 992.0
37 TraesCS6D01G264400 chrUn 91.618 513 31 5 1261 1765 410293144 410293652 0.000000e+00 699.0
38 TraesCS6D01G264400 chrUn 87.810 525 44 12 456 968 466368740 466368224 4.930000e-167 597.0
39 TraesCS6D01G264400 chrUn 97.046 237 7 0 219 455 466369009 466368773 1.490000e-107 399.0
40 TraesCS6D01G264400 chrUn 100.000 44 0 0 412 455 459911734 459911777 6.140000e-12 82.4
41 TraesCS6D01G264400 chr7A 94.828 116 4 2 1 114 711169788 711169673 2.120000e-41 180.0
42 TraesCS6D01G264400 chr4D 94.828 116 4 2 1 114 389491513 389491398 2.120000e-41 180.0
43 TraesCS6D01G264400 chr2D 94.828 116 4 2 1 114 628170131 628170016 2.120000e-41 180.0
44 TraesCS6D01G264400 chr2D 89.011 91 9 1 1874 1963 643235912 643235822 7.830000e-21 111.0
45 TraesCS6D01G264400 chr1D 92.308 117 7 1 1 115 47640193 47640309 5.930000e-37 165.0
46 TraesCS6D01G264400 chr1D 92.241 116 7 1 1 114 463532345 463532460 2.130000e-36 163.0
47 TraesCS6D01G264400 chr5D 92.241 116 7 1 1 114 322188567 322188452 2.130000e-36 163.0
48 TraesCS6D01G264400 chr5D 85.714 105 10 5 1866 1968 481806095 481806196 3.640000e-19 106.0
49 TraesCS6D01G264400 chr3A 93.671 79 5 0 1878 1956 374427550 374427628 4.680000e-23 119.0
50 TraesCS6D01G264400 chr3A 89.130 92 8 2 1878 1968 427762738 427762648 2.180000e-21 113.0
51 TraesCS6D01G264400 chr3B 87.379 103 9 4 1867 1966 802996073 802995972 6.050000e-22 115.0
52 TraesCS6D01G264400 chr5A 88.421 95 10 1 1870 1963 709611153 709611059 2.180000e-21 113.0
53 TraesCS6D01G264400 chr2A 87.755 98 10 2 1878 1974 94222191 94222095 2.180000e-21 113.0
54 TraesCS6D01G264400 chr7D 88.298 94 9 2 1871 1962 108173737 108173830 7.830000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G264400 chr6D 372949300 372951975 2675 True 4942.000000 4942 100.000000 1 2676 1 chr6D.!!$R2 2675
1 TraesCS6D01G264400 chr6D 373391660 373392514 854 True 374.500000 401 84.783500 854 1665 2 chr6D.!!$R7 811
2 TraesCS6D01G264400 chr6D 373045564 373049534 3970 True 303.500000 473 88.610000 822 1394 2 chr6D.!!$R5 572
3 TraesCS6D01G264400 chr6A 515056771 515060305 3534 True 732.000000 1242 93.938000 1 2489 2 chr6A.!!$R4 2488
4 TraesCS6D01G264400 chr6A 515032042 515035144 3102 True 493.420000 861 92.651800 769 2676 5 chr6A.!!$R3 1907
5 TraesCS6D01G264400 chr6A 515643376 515644142 766 True 355.000000 379 86.078000 943 1665 2 chr6A.!!$R5 722
6 TraesCS6D01G264400 chr6B 558732736 558734620 1884 False 823.000000 1068 92.152667 1 1795 3 chr6B.!!$F3 1794
7 TraesCS6D01G264400 chr6B 558815333 558817215 1882 False 818.666667 1055 92.045667 1 1795 3 chr6B.!!$F4 1794
8 TraesCS6D01G264400 chr6B 561145656 561146400 744 True 348.500000 355 88.512500 989 1662 2 chr6B.!!$R2 673
9 TraesCS6D01G264400 chrUn 410293144 410293652 508 False 699.000000 699 91.618000 1261 1765 1 chrUn.!!$F1 504
10 TraesCS6D01G264400 chrUn 459911734 459912588 854 False 537.200000 992 94.875000 412 1243 2 chrUn.!!$F2 831
11 TraesCS6D01G264400 chrUn 466368224 466369009 785 True 498.000000 597 92.428000 219 968 2 chrUn.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 3732 0.883833 AGATTTTCCTTGCGCCACAG 59.116 50.0 4.18 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 10084 0.039708 GAGTTGGAACTTGCTGCTGC 60.04 55.0 8.89 8.89 39.88 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 2826 1.130749 CACGACTCTCCCAACGAGTAG 59.869 57.143 0.00 0.00 41.53 2.57
128 2884 2.494059 TGAGAAGAAAAAGTCCGCCAG 58.506 47.619 0.00 0.00 0.00 4.85
378 3134 5.501156 CAAAGAAATAAGCTACTCCCACCT 58.499 41.667 0.00 0.00 0.00 4.00
518 3306 8.600625 CACAAAGCTGATTTTCATCCATAATTG 58.399 33.333 0.00 0.00 0.00 2.32
591 3388 7.653503 TGTTTCCACCATATTATTAGGGGAAA 58.346 34.615 12.78 12.78 38.38 3.13
677 3474 3.034635 TGAATCTGCCTAGAGAAGTCCC 58.965 50.000 0.00 0.00 36.14 4.46
803 3603 4.212636 ACAACCTACACAGAATTACAACGC 59.787 41.667 0.00 0.00 0.00 4.84
834 3634 2.343758 GCAGCGTTCTGTCTCCCA 59.656 61.111 0.00 0.00 42.29 4.37
843 3643 1.738099 CTGTCTCCCAAAGTCGCGG 60.738 63.158 6.13 0.00 0.00 6.46
928 3732 0.883833 AGATTTTCCTTGCGCCACAG 59.116 50.000 4.18 0.00 0.00 3.66
983 3789 3.897681 TAGGGAGGAGGTGCGCACA 62.898 63.158 38.60 14.95 0.00 4.57
1252 5697 2.780714 AGGTAAGTCGGATCGATCGAT 58.219 47.619 29.76 29.76 38.42 3.59
1409 7655 1.674651 CTCCTGTCCGTCGTCTCCA 60.675 63.158 0.00 0.00 0.00 3.86
1411 7657 1.139734 CCTGTCCGTCGTCTCCATG 59.860 63.158 0.00 0.00 0.00 3.66
1587 7833 1.306825 ATGAGCTGCTGGAGGAGGT 60.307 57.895 7.01 0.00 46.71 3.85
1675 7921 1.526887 CCTCCTTGGCGCCATCTAA 59.473 57.895 33.25 15.08 0.00 2.10
1683 7929 0.600255 GGCGCCATCTAATACGTGCT 60.600 55.000 24.80 0.00 32.41 4.40
1698 7950 0.953727 GTGCTTGTGTTCAGCCATGA 59.046 50.000 0.00 0.00 0.00 3.07
1699 7951 1.068748 GTGCTTGTGTTCAGCCATGAG 60.069 52.381 0.00 0.00 36.61 2.90
1700 7952 0.109412 GCTTGTGTTCAGCCATGAGC 60.109 55.000 0.00 0.00 44.25 4.26
1710 7962 3.214123 CCATGAGCCATGCACCGG 61.214 66.667 0.00 0.00 40.20 5.28
1721 7973 1.471829 ATGCACCGGGATGATCGCTA 61.472 55.000 6.32 0.00 0.00 4.26
1724 7976 1.948104 CACCGGGATGATCGCTAAAA 58.052 50.000 6.32 0.00 0.00 1.52
1725 7977 2.494059 CACCGGGATGATCGCTAAAAT 58.506 47.619 6.32 0.00 0.00 1.82
1727 7979 4.062293 CACCGGGATGATCGCTAAAATAA 58.938 43.478 6.32 0.00 0.00 1.40
1728 7980 4.152402 CACCGGGATGATCGCTAAAATAAG 59.848 45.833 6.32 0.00 0.00 1.73
1754 8008 1.265905 GCACAAGTTAAGTTCACCGGG 59.734 52.381 6.32 0.00 0.00 5.73
1762 8016 0.693049 AAGTTCACCGGGAGAATGCT 59.307 50.000 6.32 1.33 0.00 3.79
1763 8017 0.693049 AGTTCACCGGGAGAATGCTT 59.307 50.000 6.32 0.00 0.00 3.91
1764 8018 0.804989 GTTCACCGGGAGAATGCTTG 59.195 55.000 6.32 0.00 0.00 4.01
1765 8019 0.960364 TTCACCGGGAGAATGCTTGC 60.960 55.000 6.32 0.00 0.00 4.01
1766 8020 1.675310 CACCGGGAGAATGCTTGCA 60.675 57.895 6.32 0.00 0.00 4.08
1855 8109 9.770097 ATTACTAGTCATGTTTGGTGATCTATG 57.230 33.333 0.00 0.00 0.00 2.23
1916 8170 9.605951 AATAAATATAAGGGCATTTGGATCACT 57.394 29.630 0.00 0.00 0.00 3.41
1919 8173 9.605951 AAATATAAGGGCATTTGGATCACTATT 57.394 29.630 0.00 0.00 0.00 1.73
1920 8174 9.605951 AATATAAGGGCATTTGGATCACTATTT 57.394 29.630 0.00 0.00 0.00 1.40
1921 8175 7.919385 ATAAGGGCATTTGGATCACTATTTT 57.081 32.000 0.00 0.00 0.00 1.82
1923 8177 6.966534 AGGGCATTTGGATCACTATTTTAG 57.033 37.500 0.00 0.00 0.00 1.85
1958 8212 6.701841 TGCTCTTATATTTCTTTACGGAGCAG 59.298 38.462 9.29 0.00 45.28 4.24
1960 8214 7.866393 GCTCTTATATTTCTTTACGGAGCAGTA 59.134 37.037 0.00 0.00 41.90 2.74
1961 8215 9.182933 CTCTTATATTTCTTTACGGAGCAGTAC 57.817 37.037 0.00 0.00 0.00 2.73
1977 9202 8.857216 CGGAGCAGTACTATATATTTTTAACGG 58.143 37.037 0.00 0.00 0.00 4.44
1978 9203 9.702494 GGAGCAGTACTATATATTTTTAACGGT 57.298 33.333 0.00 0.00 0.00 4.83
1993 9218 2.178912 ACGGTGTCCAGTAATTGTGG 57.821 50.000 2.83 2.83 36.28 4.17
2062 9502 4.037446 TGAGGTGATTGCAACCAAGTTAAC 59.963 41.667 0.00 0.00 33.80 2.01
2072 9512 5.295787 TGCAACCAAGTTAACTGTTCTGTAG 59.704 40.000 9.34 0.00 0.00 2.74
2094 9534 2.159627 GTGGAGGTTACTTTCATGCGTG 59.840 50.000 0.00 0.00 0.00 5.34
2147 9591 4.157105 GGTATTTGTGCCTTGTTCCGTATT 59.843 41.667 0.00 0.00 0.00 1.89
2170 9614 4.337274 TCGTACGATGTATGATCTGGTTGT 59.663 41.667 15.28 0.00 0.00 3.32
2172 9616 4.736126 ACGATGTATGATCTGGTTGTCA 57.264 40.909 0.00 0.00 0.00 3.58
2180 9624 0.036952 ATCTGGTTGTCAGGTCGCAG 60.037 55.000 0.00 0.00 43.53 5.18
2227 9671 7.976734 TCATTTCTTTTCTTTTCTTTTGCGGTA 59.023 29.630 0.00 0.00 0.00 4.02
2228 9672 8.599774 CATTTCTTTTCTTTTCTTTTGCGGTAA 58.400 29.630 0.00 0.00 0.00 2.85
2234 9678 5.516090 TCTTTTCTTTTGCGGTAATCACAC 58.484 37.500 0.00 0.00 0.00 3.82
2235 9679 3.529634 TTCTTTTGCGGTAATCACACG 57.470 42.857 0.00 0.00 0.00 4.49
2236 9680 2.756829 TCTTTTGCGGTAATCACACGA 58.243 42.857 0.00 0.00 0.00 4.35
2237 9681 3.132160 TCTTTTGCGGTAATCACACGAA 58.868 40.909 0.00 0.00 0.00 3.85
2238 9682 2.953640 TTTGCGGTAATCACACGAAC 57.046 45.000 0.00 0.00 0.00 3.95
2242 9686 1.201736 GCGGTAATCACACGAACGAAC 60.202 52.381 0.14 0.00 0.00 3.95
2256 9700 3.031457 GAACGCGCACACACGGTA 61.031 61.111 5.73 0.00 0.00 4.02
2259 9703 3.331630 CGCGCACACACGGTAACA 61.332 61.111 8.75 0.00 0.00 2.41
2260 9704 2.247267 GCGCACACACGGTAACAC 59.753 61.111 0.30 0.00 0.00 3.32
2262 9706 1.837538 GCGCACACACGGTAACACAT 61.838 55.000 0.30 0.00 0.00 3.21
2263 9707 0.162933 CGCACACACGGTAACACATC 59.837 55.000 0.00 0.00 0.00 3.06
2264 9708 0.162933 GCACACACGGTAACACATCG 59.837 55.000 0.00 0.00 0.00 3.84
2266 9710 0.320073 ACACACGGTAACACATCGGG 60.320 55.000 0.00 0.00 0.00 5.14
2267 9711 0.038067 CACACGGTAACACATCGGGA 60.038 55.000 0.00 0.00 0.00 5.14
2269 9713 2.101783 ACACGGTAACACATCGGGATA 58.898 47.619 0.00 0.00 0.00 2.59
2271 9715 3.890756 ACACGGTAACACATCGGGATATA 59.109 43.478 0.00 0.00 0.00 0.86
2272 9716 4.525487 ACACGGTAACACATCGGGATATAT 59.475 41.667 0.00 0.00 0.00 0.86
2273 9717 5.100259 CACGGTAACACATCGGGATATATC 58.900 45.833 3.96 3.96 0.00 1.63
2274 9718 5.014858 ACGGTAACACATCGGGATATATCT 58.985 41.667 12.42 0.00 0.00 1.98
2275 9719 5.105877 ACGGTAACACATCGGGATATATCTG 60.106 44.000 12.42 5.55 0.00 2.90
2276 9720 5.105877 CGGTAACACATCGGGATATATCTGT 60.106 44.000 12.42 6.15 0.00 3.41
2277 9721 6.100004 GGTAACACATCGGGATATATCTGTG 58.900 44.000 22.07 22.07 39.78 3.66
2278 9722 5.808366 AACACATCGGGATATATCTGTGT 57.192 39.130 23.01 23.01 46.53 3.72
2279 9723 6.911250 AACACATCGGGATATATCTGTGTA 57.089 37.500 26.28 7.29 44.53 2.90
2280 9724 7.482169 AACACATCGGGATATATCTGTGTAT 57.518 36.000 26.28 18.08 44.53 2.29
2281 9725 7.101652 ACACATCGGGATATATCTGTGTATC 57.898 40.000 25.47 5.77 43.75 2.24
2282 9726 6.663523 ACACATCGGGATATATCTGTGTATCA 59.336 38.462 25.47 2.42 43.75 2.15
2283 9727 7.178451 ACACATCGGGATATATCTGTGTATCAA 59.822 37.037 25.47 1.89 43.75 2.57
2284 9728 7.704047 CACATCGGGATATATCTGTGTATCAAG 59.296 40.741 18.17 4.00 31.97 3.02
2285 9729 7.615757 ACATCGGGATATATCTGTGTATCAAGA 59.384 37.037 12.42 0.00 31.97 3.02
2286 9730 8.470002 CATCGGGATATATCTGTGTATCAAGAA 58.530 37.037 12.42 0.00 31.97 2.52
2287 9731 7.827701 TCGGGATATATCTGTGTATCAAGAAC 58.172 38.462 12.42 0.00 31.97 3.01
2288 9732 6.747739 CGGGATATATCTGTGTATCAAGAACG 59.252 42.308 12.42 0.00 31.97 3.95
2289 9733 7.036220 GGGATATATCTGTGTATCAAGAACGG 58.964 42.308 12.42 0.00 31.97 4.44
2290 9734 7.036220 GGATATATCTGTGTATCAAGAACGGG 58.964 42.308 12.42 0.00 31.97 5.28
2291 9735 5.871396 ATATCTGTGTATCAAGAACGGGT 57.129 39.130 0.00 0.00 0.00 5.28
2292 9736 3.313012 TCTGTGTATCAAGAACGGGTG 57.687 47.619 0.00 0.00 0.00 4.61
2293 9737 2.894765 TCTGTGTATCAAGAACGGGTGA 59.105 45.455 0.00 0.00 0.00 4.02
2294 9738 3.056821 TCTGTGTATCAAGAACGGGTGAG 60.057 47.826 0.00 0.00 0.00 3.51
2295 9739 2.000447 GTGTATCAAGAACGGGTGAGC 59.000 52.381 0.00 0.00 0.00 4.26
2296 9740 1.621317 TGTATCAAGAACGGGTGAGCA 59.379 47.619 0.00 0.00 0.00 4.26
2297 9741 2.037902 TGTATCAAGAACGGGTGAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
2298 9742 1.813513 ATCAAGAACGGGTGAGCAAG 58.186 50.000 0.00 0.00 0.00 4.01
2299 9743 0.884704 TCAAGAACGGGTGAGCAAGC 60.885 55.000 0.00 0.00 0.00 4.01
2300 9744 1.148273 AAGAACGGGTGAGCAAGCA 59.852 52.632 0.00 0.00 0.00 3.91
2301 9745 0.465460 AAGAACGGGTGAGCAAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
2302 9746 1.166531 AGAACGGGTGAGCAAGCAAC 61.167 55.000 0.00 0.00 0.00 4.17
2303 9747 2.443957 GAACGGGTGAGCAAGCAACG 62.444 60.000 0.00 0.00 0.00 4.10
2304 9748 4.389576 CGGGTGAGCAAGCAACGC 62.390 66.667 0.00 0.17 0.00 4.84
2305 9749 3.286751 GGGTGAGCAAGCAACGCA 61.287 61.111 9.13 0.00 0.00 5.24
2306 9750 2.050985 GGTGAGCAAGCAACGCAC 60.051 61.111 0.00 0.00 0.00 5.34
2307 9751 2.715005 GTGAGCAAGCAACGCACA 59.285 55.556 0.00 0.00 0.00 4.57
2308 9752 1.369689 GTGAGCAAGCAACGCACAG 60.370 57.895 0.00 0.00 30.44 3.66
2309 9753 2.428071 GAGCAAGCAACGCACAGC 60.428 61.111 0.00 0.00 0.00 4.40
2310 9754 3.185082 GAGCAAGCAACGCACAGCA 62.185 57.895 0.00 0.00 0.00 4.41
2311 9755 2.278726 GCAAGCAACGCACAGCAA 60.279 55.556 0.00 0.00 0.00 3.91
2312 9756 1.877617 GCAAGCAACGCACAGCAAA 60.878 52.632 0.00 0.00 0.00 3.68
2313 9757 1.814211 GCAAGCAACGCACAGCAAAG 61.814 55.000 0.00 0.00 0.00 2.77
2314 9758 1.589727 AAGCAACGCACAGCAAAGC 60.590 52.632 0.00 0.00 0.00 3.51
2315 9759 2.959220 AAGCAACGCACAGCAAAGCC 62.959 55.000 0.00 0.00 0.00 4.35
2316 9760 2.412525 CAACGCACAGCAAAGCCA 59.587 55.556 0.00 0.00 0.00 4.75
2317 9761 1.226916 CAACGCACAGCAAAGCCAA 60.227 52.632 0.00 0.00 0.00 4.52
2318 9762 0.598158 CAACGCACAGCAAAGCCAAT 60.598 50.000 0.00 0.00 0.00 3.16
2319 9763 0.958091 AACGCACAGCAAAGCCAATA 59.042 45.000 0.00 0.00 0.00 1.90
2320 9764 0.958091 ACGCACAGCAAAGCCAATAA 59.042 45.000 0.00 0.00 0.00 1.40
2321 9765 1.339610 ACGCACAGCAAAGCCAATAAA 59.660 42.857 0.00 0.00 0.00 1.40
2322 9766 1.720852 CGCACAGCAAAGCCAATAAAC 59.279 47.619 0.00 0.00 0.00 2.01
2323 9767 2.753296 GCACAGCAAAGCCAATAAACA 58.247 42.857 0.00 0.00 0.00 2.83
2324 9768 2.733026 GCACAGCAAAGCCAATAAACAG 59.267 45.455 0.00 0.00 0.00 3.16
2325 9769 2.733026 CACAGCAAAGCCAATAAACAGC 59.267 45.455 0.00 0.00 0.00 4.40
2326 9770 2.364970 ACAGCAAAGCCAATAAACAGCA 59.635 40.909 0.00 0.00 0.00 4.41
2327 9771 2.991190 CAGCAAAGCCAATAAACAGCAG 59.009 45.455 0.00 0.00 0.00 4.24
2328 9772 2.629617 AGCAAAGCCAATAAACAGCAGT 59.370 40.909 0.00 0.00 0.00 4.40
2329 9773 3.826157 AGCAAAGCCAATAAACAGCAGTA 59.174 39.130 0.00 0.00 0.00 2.74
2330 9774 4.280677 AGCAAAGCCAATAAACAGCAGTAA 59.719 37.500 0.00 0.00 0.00 2.24
2331 9775 4.622740 GCAAAGCCAATAAACAGCAGTAAG 59.377 41.667 0.00 0.00 0.00 2.34
2362 9806 4.287238 CCGTTTGGCTTTATCCATGTAC 57.713 45.455 0.00 0.00 35.77 2.90
2401 9845 1.283487 CAGCACTTGCATTGCACGA 59.717 52.632 20.55 2.52 42.83 4.35
2422 9866 0.037590 TCAGCCACCCGTTTAAGCAT 59.962 50.000 0.00 0.00 0.00 3.79
2511 9955 1.506309 GACACAGCATCGCCAACACA 61.506 55.000 0.00 0.00 0.00 3.72
2515 9959 1.068333 ACAGCATCGCCAACACATTTC 60.068 47.619 0.00 0.00 0.00 2.17
2539 9983 4.333926 CCAAAAATGAAAAGGTTTGCCGAA 59.666 37.500 0.00 0.00 40.50 4.30
2540 9984 5.163713 CCAAAAATGAAAAGGTTTGCCGAAA 60.164 36.000 0.00 0.00 40.50 3.46
2551 10011 0.464013 TTGCCGAAAACAACCGAGGA 60.464 50.000 0.00 0.00 0.00 3.71
2570 10030 1.000060 GAGCAATTGTGGCAAAGCAGA 60.000 47.619 7.40 0.00 0.00 4.26
2578 10038 0.102844 TGGCAAAGCAGAAACAGCAC 59.897 50.000 0.00 0.00 0.00 4.40
2624 10084 2.755655 TCTTCCTGAAGCTTAGAGACGG 59.244 50.000 0.00 0.00 38.28 4.79
2625 10085 0.818296 TCCTGAAGCTTAGAGACGGC 59.182 55.000 0.00 0.00 0.00 5.68
2626 10086 0.532573 CCTGAAGCTTAGAGACGGCA 59.467 55.000 0.00 0.00 0.00 5.69
2667 10129 9.303116 CTCATCTACTCCCTAATAGAGCTAAAA 57.697 37.037 0.00 0.00 34.56 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 2761 5.667626 AGGATTCAGCTACCAGAAATAAGGA 59.332 40.000 0.00 0.00 0.00 3.36
123 2879 1.532505 GCATGATTGCTTGTACTGGCG 60.533 52.381 0.00 0.00 45.77 5.69
378 3134 8.492673 AGAGCTTGTGTCAATTAATTCGAATA 57.507 30.769 11.83 0.00 0.00 1.75
591 3388 8.264347 TGTTTCTCTTTTCCTTTTGGCTAAAAT 58.736 29.630 8.54 0.00 40.12 1.82
677 3474 4.701651 TGATTTGTCATAGCCAAGTTCAGG 59.298 41.667 0.00 0.00 0.00 3.86
803 3603 0.794229 CGCTGCGGCATGTTAAACAG 60.794 55.000 19.50 0.00 38.60 3.16
834 3634 4.572571 TTGGCCACCCGCGACTTT 62.573 61.111 3.88 0.00 38.94 2.66
852 3652 2.416547 CGGATGCTTTATATGGAAGGCG 59.583 50.000 3.71 0.00 34.31 5.52
856 3656 3.674997 GGCTCGGATGCTTTATATGGAA 58.325 45.455 0.00 0.00 0.00 3.53
956 3762 1.749033 CTCCTCCCTATTCCCGTGC 59.251 63.158 0.00 0.00 0.00 5.34
1338 7578 1.617018 CCTCCCGAAGATGTCCAGCA 61.617 60.000 0.00 0.00 0.00 4.41
1475 7721 1.349026 CTTCTGCTCAAAGAGACCCCA 59.651 52.381 0.00 0.00 0.00 4.96
1570 7816 2.121385 ACCTCCTCCAGCAGCTCA 59.879 61.111 0.00 0.00 0.00 4.26
1587 7833 3.390521 CTGCCCCACTAGTCGCCA 61.391 66.667 0.00 0.00 0.00 5.69
1675 7921 1.156736 GGCTGAACACAAGCACGTAT 58.843 50.000 0.00 0.00 0.00 3.06
1683 7929 0.178995 TGGCTCATGGCTGAACACAA 60.179 50.000 6.20 0.00 41.46 3.33
1698 7950 2.687418 GATCATCCCGGTGCATGGCT 62.687 60.000 0.00 0.00 0.00 4.75
1699 7951 2.203394 ATCATCCCGGTGCATGGC 60.203 61.111 0.00 0.00 0.00 4.40
1700 7952 1.962822 CGATCATCCCGGTGCATGG 60.963 63.158 0.00 0.00 0.00 3.66
1710 7962 6.128688 GCTCAGTCTTATTTTAGCGATCATCC 60.129 42.308 0.00 0.00 0.00 3.51
1721 7973 8.451908 ACTTAACTTGTGCTCAGTCTTATTTT 57.548 30.769 0.00 0.00 0.00 1.82
1724 7976 7.171678 GTGAACTTAACTTGTGCTCAGTCTTAT 59.828 37.037 0.00 0.00 0.00 1.73
1725 7977 6.479001 GTGAACTTAACTTGTGCTCAGTCTTA 59.521 38.462 0.00 0.00 0.00 2.10
1727 7979 4.811557 GTGAACTTAACTTGTGCTCAGTCT 59.188 41.667 0.00 0.00 0.00 3.24
1728 7980 4.024809 GGTGAACTTAACTTGTGCTCAGTC 60.025 45.833 0.00 0.00 0.00 3.51
1754 8008 1.739466 TCGTCCAATGCAAGCATTCTC 59.261 47.619 16.75 9.48 43.92 2.87
1890 8144 9.605951 AGTGATCCAAATGCCCTTATATTTATT 57.394 29.630 0.00 0.00 0.00 1.40
1894 8148 9.605951 AAATAGTGATCCAAATGCCCTTATATT 57.394 29.630 0.00 0.00 0.00 1.28
1895 8149 9.605951 AAAATAGTGATCCAAATGCCCTTATAT 57.394 29.630 0.00 0.00 0.00 0.86
1899 8153 6.897413 ACTAAAATAGTGATCCAAATGCCCTT 59.103 34.615 0.00 0.00 37.69 3.95
1900 8154 6.435164 ACTAAAATAGTGATCCAAATGCCCT 58.565 36.000 0.00 0.00 37.69 5.19
1930 8184 8.560374 GCTCCGTAAAGAAATATAAGAGCATTT 58.440 33.333 0.00 0.00 0.00 2.32
1931 8185 7.715249 TGCTCCGTAAAGAAATATAAGAGCATT 59.285 33.333 6.76 0.00 36.13 3.56
1932 8186 7.217200 TGCTCCGTAAAGAAATATAAGAGCAT 58.783 34.615 6.76 0.00 36.13 3.79
1933 8187 6.578944 TGCTCCGTAAAGAAATATAAGAGCA 58.421 36.000 6.76 6.76 38.27 4.26
1934 8188 6.702282 ACTGCTCCGTAAAGAAATATAAGAGC 59.298 38.462 0.00 0.00 0.00 4.09
1935 8189 9.182933 GTACTGCTCCGTAAAGAAATATAAGAG 57.817 37.037 0.00 0.00 0.00 2.85
1950 8204 9.403110 CGTTAAAAATATATAGTACTGCTCCGT 57.597 33.333 5.39 0.00 0.00 4.69
1952 8206 9.702494 ACCGTTAAAAATATATAGTACTGCTCC 57.298 33.333 5.39 0.00 0.00 4.70
1972 9197 3.071312 ACCACAATTACTGGACACCGTTA 59.929 43.478 8.09 0.00 32.55 3.18
1974 9199 1.418637 ACCACAATTACTGGACACCGT 59.581 47.619 8.09 0.00 32.55 4.83
1975 9200 2.073816 GACCACAATTACTGGACACCG 58.926 52.381 8.09 0.00 32.55 4.94
1977 9202 5.730550 TCATAGACCACAATTACTGGACAC 58.269 41.667 8.09 1.12 32.55 3.67
1978 9203 6.408092 GGATCATAGACCACAATTACTGGACA 60.408 42.308 8.09 0.00 32.55 4.02
1979 9204 5.992217 GGATCATAGACCACAATTACTGGAC 59.008 44.000 8.09 2.80 32.55 4.02
1993 9218 4.452455 CCAACGCCAATAAGGATCATAGAC 59.548 45.833 0.00 0.00 41.22 2.59
2062 9502 3.833070 AGTAACCTCCACCTACAGAACAG 59.167 47.826 0.00 0.00 0.00 3.16
2072 9512 1.737793 CGCATGAAAGTAACCTCCACC 59.262 52.381 0.00 0.00 0.00 4.61
2094 9534 5.057149 TCTTTTCTCAGAAGTTGCCTACAC 58.943 41.667 0.00 0.00 0.00 2.90
2111 9551 7.602753 AGGCACAAATACCATACTTTCTTTTC 58.397 34.615 0.00 0.00 0.00 2.29
2131 9575 1.435577 ACGAATACGGAACAAGGCAC 58.564 50.000 0.00 0.00 44.46 5.01
2147 9591 4.337274 ACAACCAGATCATACATCGTACGA 59.663 41.667 21.93 21.93 0.00 3.43
2170 9614 0.874175 CGTCAACAACTGCGACCTGA 60.874 55.000 0.00 0.00 0.00 3.86
2172 9616 0.461339 AACGTCAACAACTGCGACCT 60.461 50.000 0.00 0.00 0.00 3.85
2200 9644 7.010460 ACCGCAAAAGAAAAGAAAAGAAATGAG 59.990 33.333 0.00 0.00 0.00 2.90
2201 9645 6.816140 ACCGCAAAAGAAAAGAAAAGAAATGA 59.184 30.769 0.00 0.00 0.00 2.57
2202 9646 7.003939 ACCGCAAAAGAAAAGAAAAGAAATG 57.996 32.000 0.00 0.00 0.00 2.32
2203 9647 8.710835 TTACCGCAAAAGAAAAGAAAAGAAAT 57.289 26.923 0.00 0.00 0.00 2.17
2204 9648 8.710835 ATTACCGCAAAAGAAAAGAAAAGAAA 57.289 26.923 0.00 0.00 0.00 2.52
2208 9652 7.009723 GTGTGATTACCGCAAAAGAAAAGAAAA 59.990 33.333 0.00 0.00 36.98 2.29
2227 9671 1.485514 CGCGTTCGTTCGTGTGATT 59.514 52.632 0.00 0.00 36.71 2.57
2228 9672 2.995450 GCGCGTTCGTTCGTGTGAT 61.995 57.895 8.43 0.00 42.27 3.06
2234 9678 3.978764 TGTGTGCGCGTTCGTTCG 61.979 61.111 8.43 0.00 38.14 3.95
2235 9679 2.423039 GTGTGTGCGCGTTCGTTC 60.423 61.111 8.43 0.00 38.14 3.95
2236 9680 4.273951 CGTGTGTGCGCGTTCGTT 62.274 61.111 8.43 0.00 42.94 3.85
2242 9686 3.331630 TGTTACCGTGTGTGCGCG 61.332 61.111 0.00 0.00 46.95 6.86
2256 9700 5.808366 ACACAGATATATCCCGATGTGTT 57.192 39.130 23.01 13.16 46.58 3.32
2259 9703 7.615757 TCTTGATACACAGATATATCCCGATGT 59.384 37.037 9.18 10.52 0.00 3.06
2260 9704 8.000780 TCTTGATACACAGATATATCCCGATG 57.999 38.462 9.18 3.87 0.00 3.84
2262 9706 7.361799 CGTTCTTGATACACAGATATATCCCGA 60.362 40.741 9.18 0.00 0.00 5.14
2263 9707 6.747739 CGTTCTTGATACACAGATATATCCCG 59.252 42.308 9.18 3.85 0.00 5.14
2264 9708 7.036220 CCGTTCTTGATACACAGATATATCCC 58.964 42.308 9.18 0.00 0.00 3.85
2266 9710 7.542477 CACCCGTTCTTGATACACAGATATATC 59.458 40.741 4.42 4.42 0.00 1.63
2267 9711 7.232737 TCACCCGTTCTTGATACACAGATATAT 59.767 37.037 0.00 0.00 0.00 0.86
2269 9713 5.362717 TCACCCGTTCTTGATACACAGATAT 59.637 40.000 0.00 0.00 0.00 1.63
2271 9715 3.513912 TCACCCGTTCTTGATACACAGAT 59.486 43.478 0.00 0.00 0.00 2.90
2272 9716 2.894765 TCACCCGTTCTTGATACACAGA 59.105 45.455 0.00 0.00 0.00 3.41
2273 9717 3.254060 CTCACCCGTTCTTGATACACAG 58.746 50.000 0.00 0.00 0.00 3.66
2274 9718 2.611971 GCTCACCCGTTCTTGATACACA 60.612 50.000 0.00 0.00 0.00 3.72
2275 9719 2.000447 GCTCACCCGTTCTTGATACAC 59.000 52.381 0.00 0.00 0.00 2.90
2276 9720 1.621317 TGCTCACCCGTTCTTGATACA 59.379 47.619 0.00 0.00 0.00 2.29
2277 9721 2.380084 TGCTCACCCGTTCTTGATAC 57.620 50.000 0.00 0.00 0.00 2.24
2278 9722 2.935238 GCTTGCTCACCCGTTCTTGATA 60.935 50.000 0.00 0.00 0.00 2.15
2279 9723 1.813513 CTTGCTCACCCGTTCTTGAT 58.186 50.000 0.00 0.00 0.00 2.57
2280 9724 0.884704 GCTTGCTCACCCGTTCTTGA 60.885 55.000 0.00 0.00 0.00 3.02
2281 9725 1.165907 TGCTTGCTCACCCGTTCTTG 61.166 55.000 0.00 0.00 0.00 3.02
2282 9726 0.465460 TTGCTTGCTCACCCGTTCTT 60.465 50.000 0.00 0.00 0.00 2.52
2283 9727 1.148273 TTGCTTGCTCACCCGTTCT 59.852 52.632 0.00 0.00 0.00 3.01
2284 9728 1.282875 GTTGCTTGCTCACCCGTTC 59.717 57.895 0.00 0.00 0.00 3.95
2285 9729 2.542907 CGTTGCTTGCTCACCCGTT 61.543 57.895 0.00 0.00 0.00 4.44
2286 9730 2.972505 CGTTGCTTGCTCACCCGT 60.973 61.111 0.00 0.00 0.00 5.28
2287 9731 4.389576 GCGTTGCTTGCTCACCCG 62.390 66.667 0.00 0.00 0.00 5.28
2288 9732 3.286751 TGCGTTGCTTGCTCACCC 61.287 61.111 0.00 0.00 0.00 4.61
2289 9733 2.050985 GTGCGTTGCTTGCTCACC 60.051 61.111 0.00 0.00 0.00 4.02
2290 9734 1.369689 CTGTGCGTTGCTTGCTCAC 60.370 57.895 0.00 0.00 32.92 3.51
2291 9735 3.024784 CTGTGCGTTGCTTGCTCA 58.975 55.556 0.00 0.00 34.93 4.26
2292 9736 2.428071 GCTGTGCGTTGCTTGCTC 60.428 61.111 0.00 0.00 0.00 4.26
2293 9737 2.282147 TTTGCTGTGCGTTGCTTGCT 62.282 50.000 0.00 0.00 0.00 3.91
2294 9738 1.814211 CTTTGCTGTGCGTTGCTTGC 61.814 55.000 0.00 0.00 0.00 4.01
2295 9739 1.814211 GCTTTGCTGTGCGTTGCTTG 61.814 55.000 0.00 0.00 0.00 4.01
2296 9740 1.589727 GCTTTGCTGTGCGTTGCTT 60.590 52.632 0.00 0.00 0.00 3.91
2297 9741 2.026590 GCTTTGCTGTGCGTTGCT 59.973 55.556 0.00 0.00 0.00 3.91
2298 9742 3.032033 GGCTTTGCTGTGCGTTGC 61.032 61.111 0.00 0.00 0.00 4.17
2299 9743 0.598158 ATTGGCTTTGCTGTGCGTTG 60.598 50.000 0.00 0.00 0.00 4.10
2300 9744 0.958091 TATTGGCTTTGCTGTGCGTT 59.042 45.000 0.00 0.00 0.00 4.84
2301 9745 0.958091 TTATTGGCTTTGCTGTGCGT 59.042 45.000 0.00 0.00 0.00 5.24
2302 9746 1.720852 GTTTATTGGCTTTGCTGTGCG 59.279 47.619 0.00 0.00 0.00 5.34
2303 9747 2.733026 CTGTTTATTGGCTTTGCTGTGC 59.267 45.455 0.00 0.00 0.00 4.57
2304 9748 2.733026 GCTGTTTATTGGCTTTGCTGTG 59.267 45.455 0.00 0.00 0.00 3.66
2305 9749 2.364970 TGCTGTTTATTGGCTTTGCTGT 59.635 40.909 0.00 0.00 0.00 4.40
2306 9750 2.991190 CTGCTGTTTATTGGCTTTGCTG 59.009 45.455 0.00 0.00 0.00 4.41
2307 9751 2.629617 ACTGCTGTTTATTGGCTTTGCT 59.370 40.909 0.00 0.00 0.00 3.91
2308 9752 3.030668 ACTGCTGTTTATTGGCTTTGC 57.969 42.857 0.00 0.00 0.00 3.68
2309 9753 6.012658 TCTTACTGCTGTTTATTGGCTTTG 57.987 37.500 0.09 0.00 0.00 2.77
2310 9754 6.403636 CGATCTTACTGCTGTTTATTGGCTTT 60.404 38.462 0.09 0.00 0.00 3.51
2311 9755 5.065218 CGATCTTACTGCTGTTTATTGGCTT 59.935 40.000 0.09 0.00 0.00 4.35
2312 9756 4.572389 CGATCTTACTGCTGTTTATTGGCT 59.428 41.667 0.09 0.00 0.00 4.75
2313 9757 4.332819 ACGATCTTACTGCTGTTTATTGGC 59.667 41.667 0.09 0.00 0.00 4.52
2314 9758 6.422776 AACGATCTTACTGCTGTTTATTGG 57.577 37.500 0.09 0.00 0.00 3.16
2315 9759 6.742718 CCAAACGATCTTACTGCTGTTTATTG 59.257 38.462 0.09 0.69 0.00 1.90
2316 9760 6.622896 GCCAAACGATCTTACTGCTGTTTATT 60.623 38.462 0.09 0.00 0.00 1.40
2317 9761 5.163754 GCCAAACGATCTTACTGCTGTTTAT 60.164 40.000 0.09 0.00 0.00 1.40
2318 9762 4.153475 GCCAAACGATCTTACTGCTGTTTA 59.847 41.667 0.09 0.00 0.00 2.01
2319 9763 3.058224 GCCAAACGATCTTACTGCTGTTT 60.058 43.478 0.09 0.00 0.00 2.83
2320 9764 2.484264 GCCAAACGATCTTACTGCTGTT 59.516 45.455 0.09 0.00 0.00 3.16
2321 9765 2.076863 GCCAAACGATCTTACTGCTGT 58.923 47.619 0.66 0.66 0.00 4.40
2322 9766 1.398390 GGCCAAACGATCTTACTGCTG 59.602 52.381 0.00 0.00 0.00 4.41
2323 9767 1.739067 GGCCAAACGATCTTACTGCT 58.261 50.000 0.00 0.00 0.00 4.24
2324 9768 0.373716 CGGCCAAACGATCTTACTGC 59.626 55.000 2.24 0.00 35.47 4.40
2325 9769 1.722011 ACGGCCAAACGATCTTACTG 58.278 50.000 2.24 0.00 37.61 2.74
2326 9770 2.467566 AACGGCCAAACGATCTTACT 57.532 45.000 2.24 0.00 37.61 2.24
2327 9771 2.413634 CCAAACGGCCAAACGATCTTAC 60.414 50.000 2.24 0.00 37.61 2.34
2328 9772 1.807742 CCAAACGGCCAAACGATCTTA 59.192 47.619 2.24 0.00 37.61 2.10
2329 9773 0.596082 CCAAACGGCCAAACGATCTT 59.404 50.000 2.24 0.00 37.61 2.40
2330 9774 1.862602 GCCAAACGGCCAAACGATCT 61.863 55.000 2.24 0.00 44.46 2.75
2331 9775 1.443702 GCCAAACGGCCAAACGATC 60.444 57.895 2.24 0.00 44.46 3.69
2349 9793 6.481313 CAGATCAGGTGTGTACATGGATAAAG 59.519 42.308 0.00 0.00 39.01 1.85
2359 9803 1.469940 CGGAGCAGATCAGGTGTGTAC 60.470 57.143 0.00 0.00 0.00 2.90
2362 9806 0.738762 CACGGAGCAGATCAGGTGTG 60.739 60.000 0.00 0.00 32.28 3.82
2401 9845 1.173913 GCTTAAACGGGTGGCTGAAT 58.826 50.000 0.00 0.00 0.00 2.57
2422 9866 2.237393 GCAAAACCCAAGTTCATGCA 57.763 45.000 10.16 0.00 43.21 3.96
2503 9947 4.133078 TCATTTTTGGGAAATGTGTTGGC 58.867 39.130 10.28 0.00 38.44 4.52
2511 9955 6.183360 GGCAAACCTTTTCATTTTTGGGAAAT 60.183 34.615 0.00 0.00 33.43 2.17
2515 9959 3.003171 CGGCAAACCTTTTCATTTTTGGG 59.997 43.478 0.00 0.00 30.98 4.12
2539 9983 2.034558 CACAATTGCTCCTCGGTTGTTT 59.965 45.455 5.05 0.00 31.19 2.83
2540 9984 1.608590 CACAATTGCTCCTCGGTTGTT 59.391 47.619 5.05 0.00 31.19 2.83
2551 10011 1.042229 TCTGCTTTGCCACAATTGCT 58.958 45.000 5.05 0.00 0.00 3.91
2570 10030 3.199764 GGTACGTACCGTGCTGTTT 57.800 52.632 28.00 0.00 41.78 2.83
2624 10084 0.039708 GAGTTGGAACTTGCTGCTGC 60.040 55.000 8.89 8.89 39.88 5.25
2625 10085 1.311859 TGAGTTGGAACTTGCTGCTG 58.688 50.000 0.00 0.00 39.88 4.41
2626 10086 2.157738 GATGAGTTGGAACTTGCTGCT 58.842 47.619 0.00 0.00 39.88 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.