Multiple sequence alignment - TraesCS6D01G263700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G263700 chr6D 100.000 3899 0 0 1 3899 372426859 372430757 0.000000e+00 7201.0
1 TraesCS6D01G263700 chr6B 92.713 1935 84 21 993 2922 559537391 559535509 0.000000e+00 2739.0
2 TraesCS6D01G263700 chr6B 90.802 424 24 6 3054 3477 559529207 559528799 1.580000e-153 553.0
3 TraesCS6D01G263700 chr6B 92.500 160 11 1 728 886 559537566 559537407 1.090000e-55 228.0
4 TraesCS6D01G263700 chr6B 95.726 117 5 0 2955 3071 559535447 559535331 5.140000e-44 189.0
5 TraesCS6D01G263700 chr6B 86.228 167 12 4 566 721 559537824 559537658 1.860000e-38 171.0
6 TraesCS6D01G263700 chr6B 80.085 236 39 8 1 231 529403195 529402963 6.700000e-38 169.0
7 TraesCS6D01G263700 chr6B 84.940 166 13 6 3508 3672 559527114 559526960 1.450000e-34 158.0
8 TraesCS6D01G263700 chr6B 89.431 123 11 2 3761 3882 559526726 559526605 1.880000e-33 154.0
9 TraesCS6D01G263700 chr6B 78.000 200 35 9 61 257 705475818 705476011 2.460000e-22 117.0
10 TraesCS6D01G263700 chrUn 97.308 780 21 0 1796 2575 466579158 466578379 0.000000e+00 1325.0
11 TraesCS6D01G263700 chr6A 89.929 983 48 20 2594 3558 514338213 514339162 0.000000e+00 1219.0
12 TraesCS6D01G263700 chr6A 89.623 530 31 11 728 1248 514331189 514331703 0.000000e+00 652.0
13 TraesCS6D01G263700 chr6A 87.071 379 21 18 1244 1618 514336650 514337004 1.690000e-108 403.0
14 TraesCS6D01G263700 chr6A 85.809 303 29 8 436 727 514330807 514331106 3.780000e-80 309.0
15 TraesCS6D01G263700 chr6A 95.000 120 6 0 3768 3887 514339159 514339278 5.140000e-44 189.0
16 TraesCS6D01G263700 chr1B 83.544 237 33 6 1 234 670277774 670277541 2.360000e-52 217.0
17 TraesCS6D01G263700 chr5B 81.633 196 33 3 1 194 553342402 553342208 4.030000e-35 159.0
18 TraesCS6D01G263700 chr5B 80.088 226 33 4 1 215 162824505 162824281 1.450000e-34 158.0
19 TraesCS6D01G263700 chr7D 78.528 163 30 5 1895 2056 515484361 515484203 6.890000e-18 102.0
20 TraesCS6D01G263700 chr7D 80.583 103 20 0 1884 1986 587302396 587302498 3.230000e-11 80.5
21 TraesCS6D01G263700 chr7A 78.528 163 30 5 1895 2056 589238872 589238714 6.890000e-18 102.0
22 TraesCS6D01G263700 chr7A 79.612 103 21 0 1884 1986 679230216 679230318 1.500000e-09 75.0
23 TraesCS6D01G263700 chr7B 77.914 163 31 5 1895 2056 546252943 546252785 3.210000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G263700 chr6D 372426859 372430757 3898 False 7201.000000 7201 100.000000 1 3899 1 chr6D.!!$F1 3898
1 TraesCS6D01G263700 chr6B 559535331 559537824 2493 True 831.750000 2739 91.791750 566 3071 4 chr6B.!!$R3 2505
2 TraesCS6D01G263700 chr6B 559526605 559529207 2602 True 288.333333 553 88.391000 3054 3882 3 chr6B.!!$R2 828
3 TraesCS6D01G263700 chrUn 466578379 466579158 779 True 1325.000000 1325 97.308000 1796 2575 1 chrUn.!!$R1 779
4 TraesCS6D01G263700 chr6A 514336650 514339278 2628 False 603.666667 1219 90.666667 1244 3887 3 chr6A.!!$F2 2643
5 TraesCS6D01G263700 chr6A 514330807 514331703 896 False 480.500000 652 87.716000 436 1248 2 chr6A.!!$F1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.030369 GTGTCTGTCAGTTCGGACGT 59.970 55.0 0.00 0.00 44.07 4.34 F
446 447 0.031449 GCATCACCTAGACCGAGCTC 59.969 60.0 2.73 2.73 0.00 4.09 F
936 1048 0.107703 CTGCTGCCAGGATTCGGTAA 60.108 55.0 0.00 0.00 35.38 2.85 F
1368 1489 0.317479 CCCTCCTCTTGTCGTCGTTT 59.683 55.0 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1651 0.030638 CAAACCACAAACGCCAGGAG 59.969 55.0 0.00 0.0 0.0 3.69 R
1533 1663 0.178990 AACCAGCTCTCCCAAACCAC 60.179 55.0 0.00 0.0 0.0 4.16 R
1749 1880 0.468648 GCCCCTGTATGTACTCCACC 59.531 60.0 0.00 0.0 0.0 4.61 R
3242 3641 0.033504 GGACGGCTCAAGTCAGACAA 59.966 55.0 2.66 0.0 40.2 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.771160 GGCGCGGAGGAGGAAGAA 61.771 66.667 8.83 0.00 0.00 2.52
20 21 2.202810 GCGCGGAGGAGGAAGAAG 60.203 66.667 8.83 0.00 0.00 2.85
21 22 2.711922 GCGCGGAGGAGGAAGAAGA 61.712 63.158 8.83 0.00 0.00 2.87
22 23 1.435515 CGCGGAGGAGGAAGAAGAG 59.564 63.158 0.00 0.00 0.00 2.85
23 24 1.819905 GCGGAGGAGGAAGAAGAGG 59.180 63.158 0.00 0.00 0.00 3.69
24 25 1.681486 GCGGAGGAGGAAGAAGAGGG 61.681 65.000 0.00 0.00 0.00 4.30
25 26 1.045911 CGGAGGAGGAAGAAGAGGGG 61.046 65.000 0.00 0.00 0.00 4.79
26 27 0.340208 GGAGGAGGAAGAAGAGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
27 28 1.691163 GGAGGAGGAAGAAGAGGGGAG 60.691 61.905 0.00 0.00 0.00 4.30
28 29 1.289530 GAGGAGGAAGAAGAGGGGAGA 59.710 57.143 0.00 0.00 0.00 3.71
29 30 1.943860 AGGAGGAAGAAGAGGGGAGAT 59.056 52.381 0.00 0.00 0.00 2.75
30 31 3.141272 GAGGAGGAAGAAGAGGGGAGATA 59.859 52.174 0.00 0.00 0.00 1.98
31 32 3.142028 AGGAGGAAGAAGAGGGGAGATAG 59.858 52.174 0.00 0.00 0.00 2.08
32 33 2.897326 GAGGAAGAAGAGGGGAGATAGC 59.103 54.545 0.00 0.00 0.00 2.97
33 34 2.248686 AGGAAGAAGAGGGGAGATAGCA 59.751 50.000 0.00 0.00 0.00 3.49
34 35 3.041946 GGAAGAAGAGGGGAGATAGCAA 58.958 50.000 0.00 0.00 0.00 3.91
35 36 3.456277 GGAAGAAGAGGGGAGATAGCAAA 59.544 47.826 0.00 0.00 0.00 3.68
36 37 4.103943 GGAAGAAGAGGGGAGATAGCAAAT 59.896 45.833 0.00 0.00 0.00 2.32
37 38 4.703379 AGAAGAGGGGAGATAGCAAATG 57.297 45.455 0.00 0.00 0.00 2.32
38 39 3.393941 AGAAGAGGGGAGATAGCAAATGG 59.606 47.826 0.00 0.00 0.00 3.16
39 40 3.066208 AGAGGGGAGATAGCAAATGGA 57.934 47.619 0.00 0.00 0.00 3.41
40 41 3.606972 AGAGGGGAGATAGCAAATGGAT 58.393 45.455 0.00 0.00 0.00 3.41
41 42 3.586618 AGAGGGGAGATAGCAAATGGATC 59.413 47.826 0.00 0.00 0.00 3.36
42 43 2.646798 AGGGGAGATAGCAAATGGATCC 59.353 50.000 4.20 4.20 0.00 3.36
43 44 2.616510 GGGGAGATAGCAAATGGATCCG 60.617 54.545 7.39 0.00 0.00 4.18
44 45 2.616510 GGGAGATAGCAAATGGATCCGG 60.617 54.545 7.39 0.00 0.00 5.14
45 46 2.079925 GAGATAGCAAATGGATCCGGC 58.920 52.381 7.39 8.28 0.00 6.13
46 47 0.798776 GATAGCAAATGGATCCGGCG 59.201 55.000 7.39 0.00 0.00 6.46
47 48 0.606401 ATAGCAAATGGATCCGGCGG 60.606 55.000 22.51 22.51 0.00 6.13
48 49 2.674563 TAGCAAATGGATCCGGCGGG 62.675 60.000 27.98 8.25 0.00 6.13
49 50 2.124320 CAAATGGATCCGGCGGGT 60.124 61.111 27.98 21.98 33.83 5.28
50 51 2.186826 CAAATGGATCCGGCGGGTC 61.187 63.158 30.69 30.69 33.83 4.46
51 52 2.375345 AAATGGATCCGGCGGGTCT 61.375 57.895 35.52 17.14 33.83 3.85
52 53 1.921869 AAATGGATCCGGCGGGTCTT 61.922 55.000 35.52 22.02 33.83 3.01
53 54 2.608970 AATGGATCCGGCGGGTCTTG 62.609 60.000 35.52 5.63 33.83 3.02
54 55 4.547367 GGATCCGGCGGGTCTTGG 62.547 72.222 35.52 4.83 33.83 3.61
55 56 4.547367 GATCCGGCGGGTCTTGGG 62.547 72.222 31.13 0.00 33.83 4.12
58 59 2.957902 ATCCGGCGGGTCTTGGGATA 62.958 60.000 27.98 1.90 35.79 2.59
59 60 2.421739 CGGCGGGTCTTGGGATAG 59.578 66.667 0.00 0.00 0.00 2.08
60 61 2.131709 CGGCGGGTCTTGGGATAGA 61.132 63.158 0.00 0.00 0.00 1.98
61 62 1.472662 CGGCGGGTCTTGGGATAGAT 61.473 60.000 0.00 0.00 0.00 1.98
62 63 0.765510 GGCGGGTCTTGGGATAGATT 59.234 55.000 0.00 0.00 0.00 2.40
63 64 1.143073 GGCGGGTCTTGGGATAGATTT 59.857 52.381 0.00 0.00 0.00 2.17
64 65 2.370849 GGCGGGTCTTGGGATAGATTTA 59.629 50.000 0.00 0.00 0.00 1.40
65 66 3.557264 GGCGGGTCTTGGGATAGATTTAG 60.557 52.174 0.00 0.00 0.00 1.85
66 67 3.071167 GCGGGTCTTGGGATAGATTTAGT 59.929 47.826 0.00 0.00 0.00 2.24
67 68 4.632153 CGGGTCTTGGGATAGATTTAGTG 58.368 47.826 0.00 0.00 0.00 2.74
68 69 4.390264 GGGTCTTGGGATAGATTTAGTGC 58.610 47.826 0.00 0.00 0.00 4.40
69 70 4.141482 GGGTCTTGGGATAGATTTAGTGCA 60.141 45.833 0.00 0.00 0.00 4.57
70 71 5.437060 GGTCTTGGGATAGATTTAGTGCAA 58.563 41.667 0.00 0.00 0.00 4.08
71 72 6.064717 GGTCTTGGGATAGATTTAGTGCAAT 58.935 40.000 0.00 0.00 0.00 3.56
72 73 6.205658 GGTCTTGGGATAGATTTAGTGCAATC 59.794 42.308 0.00 0.00 33.87 2.67
73 74 6.995091 GTCTTGGGATAGATTTAGTGCAATCT 59.005 38.462 4.16 4.16 44.28 2.40
74 75 6.994496 TCTTGGGATAGATTTAGTGCAATCTG 59.006 38.462 8.58 0.00 42.43 2.90
75 76 6.252599 TGGGATAGATTTAGTGCAATCTGT 57.747 37.500 8.58 2.43 42.43 3.41
76 77 6.057533 TGGGATAGATTTAGTGCAATCTGTG 58.942 40.000 8.58 0.00 42.43 3.66
77 78 6.126796 TGGGATAGATTTAGTGCAATCTGTGA 60.127 38.462 8.58 0.00 42.43 3.58
78 79 6.939163 GGGATAGATTTAGTGCAATCTGTGAT 59.061 38.462 8.58 0.00 42.43 3.06
79 80 7.094890 GGGATAGATTTAGTGCAATCTGTGATG 60.095 40.741 8.58 0.00 42.43 3.07
80 81 7.094890 GGATAGATTTAGTGCAATCTGTGATGG 60.095 40.741 8.58 0.00 42.43 3.51
81 82 4.885907 AGATTTAGTGCAATCTGTGATGGG 59.114 41.667 0.00 0.00 41.20 4.00
82 83 2.715749 TAGTGCAATCTGTGATGGGG 57.284 50.000 0.00 0.00 0.00 4.96
83 84 0.682209 AGTGCAATCTGTGATGGGGC 60.682 55.000 0.00 0.00 0.00 5.80
84 85 1.380246 TGCAATCTGTGATGGGGCC 60.380 57.895 0.00 0.00 0.00 5.80
85 86 2.484062 GCAATCTGTGATGGGGCCG 61.484 63.158 0.00 0.00 0.00 6.13
86 87 1.825191 CAATCTGTGATGGGGCCGG 60.825 63.158 0.00 0.00 0.00 6.13
87 88 3.060614 AATCTGTGATGGGGCCGGG 62.061 63.158 2.18 0.00 0.00 5.73
128 129 4.096816 TGCCCGGACTCCCCCATA 62.097 66.667 0.73 0.00 0.00 2.74
129 130 3.557290 GCCCGGACTCCCCCATAC 61.557 72.222 0.73 0.00 0.00 2.39
130 131 2.847715 CCCGGACTCCCCCATACC 60.848 72.222 0.73 0.00 0.00 2.73
131 132 2.847715 CCGGACTCCCCCATACCC 60.848 72.222 0.00 0.00 0.00 3.69
132 133 3.231736 CGGACTCCCCCATACCCG 61.232 72.222 0.00 0.00 0.00 5.28
133 134 2.041197 GGACTCCCCCATACCCGT 60.041 66.667 0.00 0.00 0.00 5.28
134 135 1.691689 GGACTCCCCCATACCCGTT 60.692 63.158 0.00 0.00 0.00 4.44
135 136 1.693152 GGACTCCCCCATACCCGTTC 61.693 65.000 0.00 0.00 0.00 3.95
136 137 1.691689 ACTCCCCCATACCCGTTCC 60.692 63.158 0.00 0.00 0.00 3.62
137 138 1.691337 CTCCCCCATACCCGTTCCA 60.691 63.158 0.00 0.00 0.00 3.53
138 139 1.005023 TCCCCCATACCCGTTCCAT 59.995 57.895 0.00 0.00 0.00 3.41
139 140 0.268263 TCCCCCATACCCGTTCCATA 59.732 55.000 0.00 0.00 0.00 2.74
140 141 1.132332 TCCCCCATACCCGTTCCATAT 60.132 52.381 0.00 0.00 0.00 1.78
141 142 1.708551 CCCCCATACCCGTTCCATATT 59.291 52.381 0.00 0.00 0.00 1.28
142 143 2.109304 CCCCCATACCCGTTCCATATTT 59.891 50.000 0.00 0.00 0.00 1.40
143 144 3.153919 CCCCATACCCGTTCCATATTTG 58.846 50.000 0.00 0.00 0.00 2.32
144 145 3.153919 CCCATACCCGTTCCATATTTGG 58.846 50.000 0.00 0.00 45.15 3.28
145 146 3.153919 CCATACCCGTTCCATATTTGGG 58.846 50.000 2.06 0.00 43.81 4.12
146 147 2.351706 TACCCGTTCCATATTTGGGC 57.648 50.000 2.06 0.00 44.00 5.36
147 148 0.629058 ACCCGTTCCATATTTGGGCT 59.371 50.000 2.06 0.00 44.00 5.19
148 149 1.032014 CCCGTTCCATATTTGGGCTG 58.968 55.000 2.06 0.00 43.81 4.85
149 150 1.032014 CCGTTCCATATTTGGGCTGG 58.968 55.000 2.06 0.00 43.81 4.85
150 151 1.409521 CCGTTCCATATTTGGGCTGGA 60.410 52.381 2.06 0.00 43.81 3.86
151 152 2.586425 CGTTCCATATTTGGGCTGGAT 58.414 47.619 2.06 0.00 43.81 3.41
152 153 3.497763 CCGTTCCATATTTGGGCTGGATA 60.498 47.826 2.06 0.00 43.81 2.59
153 154 4.335416 CGTTCCATATTTGGGCTGGATAT 58.665 43.478 2.06 0.00 43.81 1.63
154 155 5.496556 CGTTCCATATTTGGGCTGGATATA 58.503 41.667 2.06 0.00 43.81 0.86
155 156 5.943416 CGTTCCATATTTGGGCTGGATATAA 59.057 40.000 2.06 0.00 43.81 0.98
156 157 6.094048 CGTTCCATATTTGGGCTGGATATAAG 59.906 42.308 2.06 0.00 43.81 1.73
157 158 6.968400 TCCATATTTGGGCTGGATATAAGA 57.032 37.500 2.06 0.00 43.81 2.10
158 159 7.341885 TCCATATTTGGGCTGGATATAAGAA 57.658 36.000 2.06 0.00 43.81 2.52
159 160 7.405292 TCCATATTTGGGCTGGATATAAGAAG 58.595 38.462 2.06 0.00 43.81 2.85
160 161 7.018550 TCCATATTTGGGCTGGATATAAGAAGT 59.981 37.037 2.06 0.00 43.81 3.01
161 162 7.121759 CCATATTTGGGCTGGATATAAGAAGTG 59.878 40.741 0.00 0.00 39.56 3.16
162 163 5.450818 TTTGGGCTGGATATAAGAAGTGT 57.549 39.130 0.00 0.00 0.00 3.55
163 164 4.689612 TGGGCTGGATATAAGAAGTGTC 57.310 45.455 0.00 0.00 0.00 3.67
164 165 4.298626 TGGGCTGGATATAAGAAGTGTCT 58.701 43.478 0.00 0.00 34.72 3.41
165 166 4.101585 TGGGCTGGATATAAGAAGTGTCTG 59.898 45.833 0.00 0.00 33.05 3.51
166 167 4.101741 GGGCTGGATATAAGAAGTGTCTGT 59.898 45.833 0.00 0.00 33.05 3.41
167 168 5.293560 GGCTGGATATAAGAAGTGTCTGTC 58.706 45.833 0.00 0.00 33.05 3.51
168 169 5.163405 GGCTGGATATAAGAAGTGTCTGTCA 60.163 44.000 0.00 0.00 33.05 3.58
169 170 5.982516 GCTGGATATAAGAAGTGTCTGTCAG 59.017 44.000 0.00 0.00 33.05 3.51
170 171 6.406400 GCTGGATATAAGAAGTGTCTGTCAGT 60.406 42.308 0.00 0.00 33.05 3.41
171 172 7.482169 TGGATATAAGAAGTGTCTGTCAGTT 57.518 36.000 0.00 0.00 41.76 3.16
175 176 2.795175 GAAGTGTCTGTCAGTTCGGA 57.205 50.000 6.70 0.00 43.59 4.55
176 177 2.395654 GAAGTGTCTGTCAGTTCGGAC 58.604 52.381 6.70 0.00 43.59 4.79
177 178 0.311165 AGTGTCTGTCAGTTCGGACG 59.689 55.000 0.00 0.00 44.07 4.79
178 179 0.030369 GTGTCTGTCAGTTCGGACGT 59.970 55.000 0.00 0.00 44.07 4.34
179 180 0.742505 TGTCTGTCAGTTCGGACGTT 59.257 50.000 0.00 0.00 44.07 3.99
180 181 1.135527 TGTCTGTCAGTTCGGACGTTT 59.864 47.619 0.00 0.00 44.07 3.60
181 182 1.521423 GTCTGTCAGTTCGGACGTTTG 59.479 52.381 0.00 0.00 40.72 2.93
182 183 1.406180 TCTGTCAGTTCGGACGTTTGA 59.594 47.619 0.00 0.00 40.72 2.69
183 184 1.787155 CTGTCAGTTCGGACGTTTGAG 59.213 52.381 0.00 0.00 40.72 3.02
184 185 0.507358 GTCAGTTCGGACGTTTGAGC 59.493 55.000 0.00 0.00 0.00 4.26
185 186 0.599204 TCAGTTCGGACGTTTGAGCC 60.599 55.000 0.00 0.00 0.00 4.70
186 187 1.301479 AGTTCGGACGTTTGAGCCC 60.301 57.895 0.00 0.00 0.00 5.19
187 188 2.031465 TTCGGACGTTTGAGCCCC 59.969 61.111 0.00 0.00 0.00 5.80
188 189 3.869473 TTCGGACGTTTGAGCCCCG 62.869 63.158 3.39 3.39 41.36 5.73
189 190 4.675029 CGGACGTTTGAGCCCCGT 62.675 66.667 1.73 0.00 37.56 5.28
190 191 2.281276 GGACGTTTGAGCCCCGTT 60.281 61.111 0.00 0.00 34.51 4.44
191 192 1.895231 GGACGTTTGAGCCCCGTTT 60.895 57.895 0.00 0.00 34.51 3.60
192 193 1.281656 GACGTTTGAGCCCCGTTTG 59.718 57.895 0.00 0.00 34.51 2.93
193 194 1.153127 ACGTTTGAGCCCCGTTTGA 60.153 52.632 0.00 0.00 0.00 2.69
194 195 0.536460 ACGTTTGAGCCCCGTTTGAT 60.536 50.000 0.00 0.00 0.00 2.57
195 196 1.270947 ACGTTTGAGCCCCGTTTGATA 60.271 47.619 0.00 0.00 0.00 2.15
196 197 1.396996 CGTTTGAGCCCCGTTTGATAG 59.603 52.381 0.00 0.00 0.00 2.08
197 198 1.743394 GTTTGAGCCCCGTTTGATAGG 59.257 52.381 0.00 0.00 0.00 2.57
202 203 2.203153 CCCGTTTGATAGGGGCCG 60.203 66.667 0.00 0.00 44.58 6.13
203 204 2.587889 CCGTTTGATAGGGGCCGT 59.412 61.111 3.37 3.37 0.00 5.68
204 205 1.523032 CCGTTTGATAGGGGCCGTC 60.523 63.158 0.00 0.00 0.00 4.79
205 206 1.520666 CGTTTGATAGGGGCCGTCT 59.479 57.895 0.00 0.00 0.00 4.18
206 207 0.810031 CGTTTGATAGGGGCCGTCTG 60.810 60.000 0.00 0.00 0.00 3.51
207 208 0.463833 GTTTGATAGGGGCCGTCTGG 60.464 60.000 0.00 0.00 38.77 3.86
208 209 1.632018 TTTGATAGGGGCCGTCTGGG 61.632 60.000 0.00 0.00 39.58 4.45
209 210 2.446036 GATAGGGGCCGTCTGGGT 60.446 66.667 0.00 0.00 38.44 4.51
210 211 2.446036 ATAGGGGCCGTCTGGGTC 60.446 66.667 0.00 0.00 40.84 4.46
211 212 3.326385 ATAGGGGCCGTCTGGGTCA 62.326 63.158 0.00 0.00 44.60 4.02
212 213 2.833151 ATAGGGGCCGTCTGGGTCAA 62.833 60.000 0.00 0.00 44.60 3.18
213 214 3.961414 GGGGCCGTCTGGGTCAAA 61.961 66.667 0.00 0.00 44.60 2.69
214 215 2.114411 GGGCCGTCTGGGTCAAAA 59.886 61.111 0.00 0.00 44.60 2.44
215 216 1.529713 GGGCCGTCTGGGTCAAAAA 60.530 57.895 0.00 0.00 44.60 1.94
232 233 2.631160 AAAACATGACCGGTCAGTGA 57.369 45.000 37.98 18.68 43.61 3.41
233 234 1.878953 AAACATGACCGGTCAGTGAC 58.121 50.000 37.98 15.24 43.61 3.67
234 235 1.048601 AACATGACCGGTCAGTGACT 58.951 50.000 37.98 21.50 43.61 3.41
235 236 0.318441 ACATGACCGGTCAGTGACTG 59.682 55.000 37.98 31.61 43.61 3.51
236 237 0.603065 CATGACCGGTCAGTGACTGA 59.397 55.000 37.98 11.93 43.61 3.41
237 238 1.000843 CATGACCGGTCAGTGACTGAA 59.999 52.381 37.98 15.26 42.46 3.02
238 239 0.387929 TGACCGGTCAGTGACTGAAC 59.612 55.000 33.23 20.30 44.00 3.18
241 242 3.952811 GGTCAGTGACTGAACGGC 58.047 61.111 18.01 4.57 42.46 5.68
242 243 1.367840 GGTCAGTGACTGAACGGCT 59.632 57.895 18.01 0.00 42.46 5.52
243 244 0.667792 GGTCAGTGACTGAACGGCTC 60.668 60.000 18.01 3.40 42.46 4.70
244 245 1.004277 GTCAGTGACTGAACGGCTCG 61.004 60.000 18.01 0.00 42.46 5.03
245 246 1.007271 CAGTGACTGAACGGCTCGT 60.007 57.895 6.79 0.00 43.97 4.18
246 247 1.004277 CAGTGACTGAACGGCTCGTC 61.004 60.000 6.79 0.00 39.99 4.20
247 248 1.733399 GTGACTGAACGGCTCGTCC 60.733 63.158 0.69 0.00 39.99 4.79
256 257 4.655527 GGCTCGTCCGGACATATG 57.344 61.111 32.80 17.37 0.00 1.78
257 258 1.664965 GGCTCGTCCGGACATATGC 60.665 63.158 32.80 26.52 0.00 3.14
258 259 1.664965 GCTCGTCCGGACATATGCC 60.665 63.158 32.80 11.52 0.00 4.40
265 266 2.532186 CGGACATATGCCGTGGATG 58.468 57.895 22.59 2.70 43.66 3.51
266 267 1.568612 CGGACATATGCCGTGGATGC 61.569 60.000 22.59 0.71 43.66 3.91
267 268 0.250467 GGACATATGCCGTGGATGCT 60.250 55.000 1.58 0.00 0.00 3.79
268 269 1.151668 GACATATGCCGTGGATGCTC 58.848 55.000 1.58 0.00 0.00 4.26
269 270 0.761187 ACATATGCCGTGGATGCTCT 59.239 50.000 1.58 0.00 0.00 4.09
270 271 1.970640 ACATATGCCGTGGATGCTCTA 59.029 47.619 1.58 0.00 0.00 2.43
271 272 2.368548 ACATATGCCGTGGATGCTCTAA 59.631 45.455 1.58 0.00 0.00 2.10
272 273 2.820059 TATGCCGTGGATGCTCTAAG 57.180 50.000 0.00 0.00 0.00 2.18
273 274 0.107456 ATGCCGTGGATGCTCTAAGG 59.893 55.000 0.00 0.00 30.24 2.69
274 275 1.889573 GCCGTGGATGCTCTAAGGC 60.890 63.158 9.59 9.59 43.84 4.35
275 276 1.826024 CCGTGGATGCTCTAAGGCT 59.174 57.895 0.00 0.00 0.00 4.58
276 277 0.249657 CCGTGGATGCTCTAAGGCTC 60.250 60.000 0.00 0.00 0.00 4.70
277 278 0.596083 CGTGGATGCTCTAAGGCTCG 60.596 60.000 0.00 0.00 0.00 5.03
278 279 0.747255 GTGGATGCTCTAAGGCTCGA 59.253 55.000 0.00 0.00 0.00 4.04
279 280 1.035923 TGGATGCTCTAAGGCTCGAG 58.964 55.000 8.45 8.45 0.00 4.04
280 281 1.323412 GGATGCTCTAAGGCTCGAGA 58.677 55.000 18.75 8.13 0.00 4.04
281 282 1.892474 GGATGCTCTAAGGCTCGAGAT 59.108 52.381 18.75 3.67 0.00 2.75
282 283 2.352617 GGATGCTCTAAGGCTCGAGATG 60.353 54.545 18.75 0.37 0.00 2.90
283 284 1.035923 TGCTCTAAGGCTCGAGATGG 58.964 55.000 18.75 3.41 0.00 3.51
284 285 0.319469 GCTCTAAGGCTCGAGATGGC 60.319 60.000 18.75 1.91 0.00 4.40
285 286 1.035923 CTCTAAGGCTCGAGATGGCA 58.964 55.000 18.75 0.00 0.00 4.92
286 287 1.617850 CTCTAAGGCTCGAGATGGCAT 59.382 52.381 18.75 0.00 0.00 4.40
287 288 1.615883 TCTAAGGCTCGAGATGGCATC 59.384 52.381 19.78 19.78 0.00 3.91
288 289 0.315251 TAAGGCTCGAGATGGCATCG 59.685 55.000 18.75 12.81 41.50 3.84
289 290 1.395045 AAGGCTCGAGATGGCATCGA 61.395 55.000 18.75 16.39 46.26 3.59
292 293 2.332869 TCGAGATGGCATCGAGCG 59.667 61.111 24.25 24.25 43.79 5.03
293 294 2.481471 TCGAGATGGCATCGAGCGT 61.481 57.895 26.81 11.71 43.79 5.07
294 295 1.164041 TCGAGATGGCATCGAGCGTA 61.164 55.000 26.81 17.14 43.79 4.42
295 296 3.319445 TCGAGATGGCATCGAGCGTAC 62.319 57.143 26.81 13.27 43.79 3.67
304 305 2.474561 TCGAGCGTACGATTGGACT 58.525 52.632 21.65 4.81 37.37 3.85
305 306 0.376152 TCGAGCGTACGATTGGACTC 59.624 55.000 21.65 13.39 37.37 3.36
306 307 0.591741 CGAGCGTACGATTGGACTCC 60.592 60.000 21.65 0.00 35.09 3.85
307 308 0.248949 GAGCGTACGATTGGACTCCC 60.249 60.000 21.65 0.00 0.00 4.30
308 309 1.588139 GCGTACGATTGGACTCCCG 60.588 63.158 21.65 0.00 34.29 5.14
309 310 1.805254 CGTACGATTGGACTCCCGT 59.195 57.895 10.44 3.73 38.82 5.28
310 311 0.524816 CGTACGATTGGACTCCCGTG 60.525 60.000 10.44 0.00 36.58 4.94
311 312 0.179119 GTACGATTGGACTCCCGTGG 60.179 60.000 7.82 0.00 36.58 4.94
312 313 1.952102 TACGATTGGACTCCCGTGGC 61.952 60.000 7.82 0.00 36.58 5.01
313 314 2.990479 GATTGGACTCCCGTGGCT 59.010 61.111 0.00 0.00 34.29 4.75
314 315 1.299976 GATTGGACTCCCGTGGCTT 59.700 57.895 0.00 0.00 34.29 4.35
315 316 0.744771 GATTGGACTCCCGTGGCTTC 60.745 60.000 0.00 0.00 34.29 3.86
316 317 2.521958 ATTGGACTCCCGTGGCTTCG 62.522 60.000 0.00 0.00 34.29 3.79
317 318 3.379445 GGACTCCCGTGGCTTCGA 61.379 66.667 4.47 0.00 0.00 3.71
318 319 2.182030 GACTCCCGTGGCTTCGAG 59.818 66.667 4.47 0.00 0.00 4.04
319 320 2.600769 ACTCCCGTGGCTTCGAGT 60.601 61.111 4.47 0.00 0.00 4.18
320 321 2.125912 CTCCCGTGGCTTCGAGTG 60.126 66.667 4.47 0.00 0.00 3.51
321 322 2.599281 TCCCGTGGCTTCGAGTGA 60.599 61.111 4.47 0.00 0.00 3.41
322 323 2.432628 CCCGTGGCTTCGAGTGAC 60.433 66.667 4.47 0.00 0.00 3.67
323 324 2.432628 CCGTGGCTTCGAGTGACC 60.433 66.667 4.47 0.00 0.00 4.02
324 325 2.432628 CGTGGCTTCGAGTGACCC 60.433 66.667 0.00 0.00 0.00 4.46
325 326 2.741092 GTGGCTTCGAGTGACCCA 59.259 61.111 0.00 0.00 0.00 4.51
326 327 1.374758 GTGGCTTCGAGTGACCCAG 60.375 63.158 0.00 0.00 0.00 4.45
327 328 2.435059 GGCTTCGAGTGACCCAGC 60.435 66.667 0.00 0.00 0.00 4.85
328 329 2.343758 GCTTCGAGTGACCCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
329 330 2.029844 GCTTCGAGTGACCCAGCAC 61.030 63.158 0.00 0.00 39.05 4.40
330 331 1.374758 CTTCGAGTGACCCAGCACC 60.375 63.158 0.00 0.00 39.59 5.01
331 332 2.788191 CTTCGAGTGACCCAGCACCC 62.788 65.000 0.00 0.00 39.59 4.61
332 333 3.314331 CGAGTGACCCAGCACCCT 61.314 66.667 0.00 0.00 39.59 4.34
333 334 2.348998 GAGTGACCCAGCACCCTG 59.651 66.667 0.00 0.00 39.59 4.45
334 335 3.909086 GAGTGACCCAGCACCCTGC 62.909 68.421 0.00 0.00 45.46 4.85
343 344 3.537388 GCACCCTGCACAAAACCT 58.463 55.556 0.00 0.00 44.26 3.50
344 345 1.067916 GCACCCTGCACAAAACCTG 59.932 57.895 0.00 0.00 44.26 4.00
345 346 1.741525 CACCCTGCACAAAACCTGG 59.258 57.895 0.00 0.00 0.00 4.45
346 347 1.457455 ACCCTGCACAAAACCTGGG 60.457 57.895 0.00 1.98 43.58 4.45
347 348 1.457455 CCCTGCACAAAACCTGGGT 60.457 57.895 0.00 0.00 35.98 4.51
348 349 1.741525 CCTGCACAAAACCTGGGTG 59.258 57.895 0.00 0.00 35.68 4.61
354 355 2.795329 CACAAAACCTGGGTGCTATCT 58.205 47.619 0.00 0.00 0.00 1.98
355 356 2.749621 CACAAAACCTGGGTGCTATCTC 59.250 50.000 0.00 0.00 0.00 2.75
356 357 2.290960 ACAAAACCTGGGTGCTATCTCC 60.291 50.000 0.00 0.00 0.00 3.71
357 358 1.668826 AAACCTGGGTGCTATCTCCA 58.331 50.000 0.00 0.00 0.00 3.86
358 359 0.912486 AACCTGGGTGCTATCTCCAC 59.088 55.000 0.00 0.00 0.00 4.02
359 360 0.043334 ACCTGGGTGCTATCTCCACT 59.957 55.000 0.00 0.00 33.78 4.00
360 361 1.291033 ACCTGGGTGCTATCTCCACTA 59.709 52.381 0.00 0.00 33.78 2.74
361 362 1.689273 CCTGGGTGCTATCTCCACTAC 59.311 57.143 0.00 0.00 33.78 2.73
362 363 2.388735 CTGGGTGCTATCTCCACTACA 58.611 52.381 0.00 0.00 33.78 2.74
363 364 2.766263 CTGGGTGCTATCTCCACTACAA 59.234 50.000 0.00 0.00 33.78 2.41
364 365 3.178046 TGGGTGCTATCTCCACTACAAA 58.822 45.455 0.00 0.00 33.78 2.83
365 366 3.197766 TGGGTGCTATCTCCACTACAAAG 59.802 47.826 0.00 0.00 33.78 2.77
366 367 3.198872 GGTGCTATCTCCACTACAAAGC 58.801 50.000 0.00 0.00 33.78 3.51
367 368 3.118592 GGTGCTATCTCCACTACAAAGCT 60.119 47.826 0.00 0.00 33.78 3.74
368 369 4.508662 GTGCTATCTCCACTACAAAGCTT 58.491 43.478 0.00 0.00 0.00 3.74
369 370 4.331168 GTGCTATCTCCACTACAAAGCTTG 59.669 45.833 0.00 0.00 0.00 4.01
370 371 3.311048 GCTATCTCCACTACAAAGCTTGC 59.689 47.826 0.00 0.00 0.00 4.01
371 372 2.928801 TCTCCACTACAAAGCTTGCA 57.071 45.000 0.00 0.00 0.00 4.08
372 373 2.771089 TCTCCACTACAAAGCTTGCAG 58.229 47.619 0.00 0.00 0.00 4.41
373 374 1.198637 CTCCACTACAAAGCTTGCAGC 59.801 52.381 0.00 0.47 42.84 5.25
374 375 0.953727 CCACTACAAAGCTTGCAGCA 59.046 50.000 0.00 0.00 45.56 4.41
375 376 1.068748 CCACTACAAAGCTTGCAGCAG 60.069 52.381 0.00 0.00 45.56 4.24
376 377 1.605710 CACTACAAAGCTTGCAGCAGT 59.394 47.619 0.00 0.00 45.56 4.40
377 378 1.876156 ACTACAAAGCTTGCAGCAGTC 59.124 47.619 0.00 0.00 45.56 3.51
378 379 1.198637 CTACAAAGCTTGCAGCAGTCC 59.801 52.381 0.00 0.00 45.56 3.85
379 380 0.466922 ACAAAGCTTGCAGCAGTCCT 60.467 50.000 0.00 0.00 45.56 3.85
380 381 0.039437 CAAAGCTTGCAGCAGTCCTG 60.039 55.000 0.00 0.00 45.56 3.86
381 382 0.466922 AAAGCTTGCAGCAGTCCTGT 60.467 50.000 0.00 0.00 45.56 4.00
382 383 0.466922 AAGCTTGCAGCAGTCCTGTT 60.467 50.000 0.00 0.00 45.56 3.16
383 384 0.888285 AGCTTGCAGCAGTCCTGTTC 60.888 55.000 10.16 0.00 45.56 3.18
384 385 1.860484 GCTTGCAGCAGTCCTGTTCC 61.860 60.000 0.00 0.00 43.71 3.62
385 386 0.250640 CTTGCAGCAGTCCTGTTCCT 60.251 55.000 0.00 0.00 43.71 3.36
386 387 1.002430 CTTGCAGCAGTCCTGTTCCTA 59.998 52.381 0.00 0.00 43.71 2.94
387 388 0.610174 TGCAGCAGTCCTGTTCCTAG 59.390 55.000 0.00 0.00 43.71 3.02
388 389 0.898320 GCAGCAGTCCTGTTCCTAGA 59.102 55.000 0.00 0.00 43.71 2.43
389 390 1.134848 GCAGCAGTCCTGTTCCTAGAG 60.135 57.143 0.00 0.00 43.71 2.43
390 391 2.451490 CAGCAGTCCTGTTCCTAGAGA 58.549 52.381 0.00 0.00 36.79 3.10
391 392 2.828520 CAGCAGTCCTGTTCCTAGAGAA 59.171 50.000 0.00 0.00 36.79 2.87
392 393 3.259374 CAGCAGTCCTGTTCCTAGAGAAA 59.741 47.826 0.00 0.00 35.85 2.52
393 394 3.904339 AGCAGTCCTGTTCCTAGAGAAAA 59.096 43.478 0.00 0.00 35.85 2.29
394 395 4.348168 AGCAGTCCTGTTCCTAGAGAAAAA 59.652 41.667 0.00 0.00 35.85 1.94
417 418 6.373186 AAAAGTTAGCAGTAGTTTGTGACC 57.627 37.500 0.00 0.00 0.00 4.02
418 419 4.682778 AGTTAGCAGTAGTTTGTGACCA 57.317 40.909 0.00 0.00 0.00 4.02
419 420 5.031066 AGTTAGCAGTAGTTTGTGACCAA 57.969 39.130 0.00 0.00 0.00 3.67
420 421 5.621193 AGTTAGCAGTAGTTTGTGACCAAT 58.379 37.500 0.00 0.00 0.00 3.16
421 422 5.470098 AGTTAGCAGTAGTTTGTGACCAATG 59.530 40.000 0.00 0.00 0.00 2.82
422 423 2.554032 AGCAGTAGTTTGTGACCAATGC 59.446 45.455 0.00 0.00 33.06 3.56
423 424 2.293122 GCAGTAGTTTGTGACCAATGCA 59.707 45.455 0.00 0.00 33.10 3.96
424 425 3.853307 GCAGTAGTTTGTGACCAATGCAC 60.853 47.826 0.00 0.00 36.81 4.57
425 426 2.884639 AGTAGTTTGTGACCAATGCACC 59.115 45.455 0.00 0.00 35.43 5.01
426 427 1.774110 AGTTTGTGACCAATGCACCA 58.226 45.000 0.00 0.00 35.43 4.17
427 428 1.682854 AGTTTGTGACCAATGCACCAG 59.317 47.619 0.00 0.00 35.43 4.00
428 429 0.388659 TTTGTGACCAATGCACCAGC 59.611 50.000 0.00 0.00 42.57 4.85
441 442 0.179100 CACCAGCATCACCTAGACCG 60.179 60.000 0.00 0.00 0.00 4.79
446 447 0.031449 GCATCACCTAGACCGAGCTC 59.969 60.000 2.73 2.73 0.00 4.09
458 459 0.242825 CCGAGCTCAGTGGAACGTTA 59.757 55.000 15.40 0.00 45.86 3.18
459 460 1.336517 CCGAGCTCAGTGGAACGTTAA 60.337 52.381 15.40 0.00 45.86 2.01
460 461 1.719780 CGAGCTCAGTGGAACGTTAAC 59.280 52.381 15.40 2.79 45.86 2.01
468 474 6.114221 TCAGTGGAACGTTAACTTTGAAAG 57.886 37.500 12.22 2.89 45.86 2.62
472 478 7.700656 CAGTGGAACGTTAACTTTGAAAGAAAT 59.299 33.333 12.53 0.25 45.86 2.17
473 479 8.248253 AGTGGAACGTTAACTTTGAAAGAAATT 58.752 29.630 12.53 0.00 45.86 1.82
474 480 9.505995 GTGGAACGTTAACTTTGAAAGAAATTA 57.494 29.630 12.53 0.00 0.00 1.40
475 481 9.505995 TGGAACGTTAACTTTGAAAGAAATTAC 57.494 29.630 12.53 1.41 0.00 1.89
476 482 8.961092 GGAACGTTAACTTTGAAAGAAATTACC 58.039 33.333 12.53 2.24 0.00 2.85
478 484 8.845942 ACGTTAACTTTGAAAGAAATTACCAC 57.154 30.769 12.53 0.00 0.00 4.16
479 485 7.641020 ACGTTAACTTTGAAAGAAATTACCACG 59.359 33.333 12.53 9.79 0.00 4.94
480 486 7.356962 CGTTAACTTTGAAAGAAATTACCACGC 60.357 37.037 12.53 0.00 0.00 5.34
481 487 4.533222 ACTTTGAAAGAAATTACCACGCG 58.467 39.130 12.53 3.53 0.00 6.01
482 488 4.273969 ACTTTGAAAGAAATTACCACGCGA 59.726 37.500 15.93 0.00 0.00 5.87
483 489 4.398549 TTGAAAGAAATTACCACGCGAG 57.601 40.909 15.93 4.16 0.00 5.03
513 519 3.076278 TTAGCCACGTACCCCGGG 61.076 66.667 15.80 15.80 42.24 5.73
514 520 3.903281 TTAGCCACGTACCCCGGGT 62.903 63.158 21.85 15.24 38.70 5.28
641 647 2.150397 AGCAACCTGTGTCTTCGTAC 57.850 50.000 0.00 0.00 0.00 3.67
665 671 2.568623 ACAAAGAAGGCGGAGACAAT 57.431 45.000 0.00 0.00 39.87 2.71
667 673 2.154462 CAAAGAAGGCGGAGACAATGT 58.846 47.619 0.00 0.00 39.87 2.71
669 675 0.687354 AGAAGGCGGAGACAATGTGT 59.313 50.000 0.00 0.00 39.87 3.72
681 698 1.673920 ACAATGTGTCGAACGCCTTTT 59.326 42.857 0.00 0.00 0.00 2.27
709 726 3.204827 GCGCATCGGCCTTGTCAT 61.205 61.111 0.30 0.00 36.38 3.06
765 876 2.180159 TACCCCTCAGCTTTGCGTCC 62.180 60.000 0.00 0.00 0.00 4.79
799 910 1.444119 GCCTCACCTCACGCAAAACA 61.444 55.000 0.00 0.00 0.00 2.83
810 921 4.536065 TCACGCAAAACAAATCTGATCAC 58.464 39.130 0.00 0.00 0.00 3.06
887 999 1.138661 CATCTCCTCAGGTTCAGGCTC 59.861 57.143 0.00 0.00 0.00 4.70
894 1006 2.047179 GGTTCAGGCTCGTCCACC 60.047 66.667 0.00 0.00 37.29 4.61
895 1007 2.432628 GTTCAGGCTCGTCCACCG 60.433 66.667 0.00 0.00 37.29 4.94
910 1022 0.518636 CACCGGTTGACATCTTGCTG 59.481 55.000 2.97 0.00 0.00 4.41
911 1023 1.237285 ACCGGTTGACATCTTGCTGC 61.237 55.000 0.00 0.00 0.00 5.25
912 1024 0.957395 CCGGTTGACATCTTGCTGCT 60.957 55.000 0.00 0.00 0.00 4.24
936 1048 0.107703 CTGCTGCCAGGATTCGGTAA 60.108 55.000 0.00 0.00 35.38 2.85
937 1049 0.392461 TGCTGCCAGGATTCGGTAAC 60.392 55.000 0.00 0.00 0.00 2.50
953 1065 3.132925 GGTAACCAGCACGTACAGAAAA 58.867 45.455 0.00 0.00 0.00 2.29
954 1066 3.185797 GGTAACCAGCACGTACAGAAAAG 59.814 47.826 0.00 0.00 0.00 2.27
1047 1160 3.677648 CCACCGTCCGTCTCCGTT 61.678 66.667 0.00 0.00 0.00 4.44
1113 1227 1.061570 CTACTACGTGACGTCGCCC 59.938 63.158 22.62 6.58 41.54 6.13
1131 1245 1.096386 CCTCAGAAGCTCTGCATGCC 61.096 60.000 16.68 0.00 43.95 4.40
1325 1446 2.765807 CATGGCCTCGTCCTCCCT 60.766 66.667 3.32 0.00 0.00 4.20
1326 1447 2.444895 ATGGCCTCGTCCTCCCTC 60.445 66.667 3.32 0.00 0.00 4.30
1327 1448 3.015332 ATGGCCTCGTCCTCCCTCT 62.015 63.158 3.32 0.00 0.00 3.69
1368 1489 0.317479 CCCTCCTCTTGTCGTCGTTT 59.683 55.000 0.00 0.00 0.00 3.60
1377 1498 1.315690 TGTCGTCGTTTCTCCTCTGT 58.684 50.000 0.00 0.00 0.00 3.41
1449 1570 2.435059 GTCTCCACCGCCAGCTTC 60.435 66.667 0.00 0.00 0.00 3.86
1450 1571 4.069232 TCTCCACCGCCAGCTTCG 62.069 66.667 0.00 0.00 0.00 3.79
1503 1633 1.168714 GCCCAGGTAGACTTGCTTTG 58.831 55.000 0.00 0.00 0.00 2.77
1509 1639 1.996191 GGTAGACTTGCTTTGCTCGAG 59.004 52.381 8.45 8.45 0.00 4.04
1511 1641 2.246719 AGACTTGCTTTGCTCGAGTT 57.753 45.000 15.13 0.00 0.00 3.01
1512 1642 1.869767 AGACTTGCTTTGCTCGAGTTG 59.130 47.619 15.13 3.21 0.00 3.16
1513 1643 1.599542 GACTTGCTTTGCTCGAGTTGT 59.400 47.619 15.13 1.84 0.00 3.32
1514 1644 1.599542 ACTTGCTTTGCTCGAGTTGTC 59.400 47.619 15.13 0.00 0.00 3.18
1515 1645 1.869767 CTTGCTTTGCTCGAGTTGTCT 59.130 47.619 15.13 0.00 0.00 3.41
1516 1646 1.502231 TGCTTTGCTCGAGTTGTCTC 58.498 50.000 15.13 0.00 37.35 3.36
1526 1656 2.355717 GAGTTGTCTCGGTTCTCCTG 57.644 55.000 0.00 0.00 0.00 3.86
1527 1657 0.969894 AGTTGTCTCGGTTCTCCTGG 59.030 55.000 0.00 0.00 0.00 4.45
1528 1658 0.670854 GTTGTCTCGGTTCTCCTGGC 60.671 60.000 0.00 0.00 0.00 4.85
1529 1659 2.154798 TTGTCTCGGTTCTCCTGGCG 62.155 60.000 0.00 0.00 0.00 5.69
1530 1660 2.282958 TCTCGGTTCTCCTGGCGT 60.283 61.111 0.00 0.00 0.00 5.68
1531 1661 1.906824 TCTCGGTTCTCCTGGCGTT 60.907 57.895 0.00 0.00 0.00 4.84
1532 1662 1.004918 CTCGGTTCTCCTGGCGTTT 60.005 57.895 0.00 0.00 0.00 3.60
1533 1663 1.291877 CTCGGTTCTCCTGGCGTTTG 61.292 60.000 0.00 0.00 0.00 2.93
1534 1664 1.597027 CGGTTCTCCTGGCGTTTGT 60.597 57.895 0.00 0.00 0.00 2.83
1535 1665 1.841663 CGGTTCTCCTGGCGTTTGTG 61.842 60.000 0.00 0.00 0.00 3.33
1536 1666 1.515521 GGTTCTCCTGGCGTTTGTGG 61.516 60.000 0.00 0.00 0.00 4.17
1541 1671 1.067250 CCTGGCGTTTGTGGTTTGG 59.933 57.895 0.00 0.00 0.00 3.28
1580 1711 4.978580 GCTTTTGGAGAGTTGTTGTTGATC 59.021 41.667 0.00 0.00 0.00 2.92
1587 1718 3.042887 GAGTTGTTGTTGATCCGTTTGC 58.957 45.455 0.00 0.00 0.00 3.68
1758 1889 4.814294 CAGCGGCGGGTGGAGTAC 62.814 72.222 15.05 0.00 38.00 2.73
1761 1892 2.788640 GCGGCGGGTGGAGTACATA 61.789 63.158 9.78 0.00 0.00 2.29
1765 1896 0.104304 GCGGGTGGAGTACATACAGG 59.896 60.000 0.00 0.00 0.00 4.00
1768 1899 0.468648 GGTGGAGTACATACAGGGGC 59.531 60.000 0.00 0.00 0.00 5.80
1776 1907 3.467226 ATACAGGGGCGGGTGTCG 61.467 66.667 0.00 0.00 42.76 4.35
2101 2232 0.179026 CTCGGACCTCGGGATCTACA 60.179 60.000 0.00 0.00 43.26 2.74
2102 2233 0.477204 TCGGACCTCGGGATCTACAT 59.523 55.000 0.00 0.00 39.77 2.29
2109 2240 2.507854 CGGGATCTACATGGCCGGT 61.508 63.158 1.90 0.76 0.00 5.28
2115 2246 1.819632 CTACATGGCCGGTTGCTCC 60.820 63.158 1.90 0.00 40.92 4.70
2319 2450 4.742201 TCGCTCAAGTCGCAGGCC 62.742 66.667 0.00 0.00 0.00 5.19
2922 3286 6.373005 TCCACTGATCCATTCTTTGACTTA 57.627 37.500 0.00 0.00 0.00 2.24
2923 3287 6.173339 TCCACTGATCCATTCTTTGACTTAC 58.827 40.000 0.00 0.00 0.00 2.34
2925 3289 6.314896 CCACTGATCCATTCTTTGACTTACTC 59.685 42.308 0.00 0.00 0.00 2.59
2927 3291 7.064371 CACTGATCCATTCTTTGACTTACTCTG 59.936 40.741 0.00 0.00 0.00 3.35
2928 3292 7.009179 TGATCCATTCTTTGACTTACTCTGT 57.991 36.000 0.00 0.00 0.00 3.41
2929 3293 6.875726 TGATCCATTCTTTGACTTACTCTGTG 59.124 38.462 0.00 0.00 0.00 3.66
2946 3339 6.357367 ACTCTGTGACCACTTCTTACAAAAT 58.643 36.000 1.62 0.00 0.00 1.82
2961 3354 7.500992 TCTTACAAAATCTATCACTAGCAGGG 58.499 38.462 0.00 0.00 0.00 4.45
3035 3432 5.118203 CGTACACGAAAAGGAAAAGGTAGAG 59.882 44.000 0.00 0.00 43.02 2.43
3130 3529 2.738521 CCAGAGGCGTGTTGACGG 60.739 66.667 0.00 0.00 46.20 4.79
3137 3536 2.019951 GCGTGTTGACGGTCGACAT 61.020 57.895 28.68 4.32 46.20 3.06
3206 3605 2.413310 ACGGGTGATGATGGGTTTAC 57.587 50.000 0.00 0.00 0.00 2.01
3208 3607 2.040545 ACGGGTGATGATGGGTTTACAA 59.959 45.455 0.00 0.00 0.00 2.41
3209 3608 2.422127 CGGGTGATGATGGGTTTACAAC 59.578 50.000 0.00 0.00 0.00 3.32
3210 3609 3.697166 GGGTGATGATGGGTTTACAACT 58.303 45.455 0.00 0.00 0.00 3.16
3242 3641 2.308275 AGTTAGGAGGGAGTGTAGACGT 59.692 50.000 0.00 0.00 0.00 4.34
3243 3642 3.087781 GTTAGGAGGGAGTGTAGACGTT 58.912 50.000 0.00 0.00 0.00 3.99
3286 3686 4.520846 CGCGGCGCCAAAGTCATC 62.521 66.667 28.98 3.17 0.00 2.92
3287 3687 4.179579 GCGGCGCCAAAGTCATCC 62.180 66.667 28.98 0.00 0.00 3.51
3288 3688 2.745884 CGGCGCCAAAGTCATCCA 60.746 61.111 28.98 0.00 0.00 3.41
3289 3689 2.114670 CGGCGCCAAAGTCATCCAT 61.115 57.895 28.98 0.00 0.00 3.41
3311 3711 0.326927 CTTTTGGGGCTAGACCGGAA 59.673 55.000 9.46 2.48 40.62 4.30
3312 3712 0.996583 TTTTGGGGCTAGACCGGAAT 59.003 50.000 9.46 0.00 40.62 3.01
3313 3713 1.882308 TTTGGGGCTAGACCGGAATA 58.118 50.000 9.46 0.00 40.62 1.75
3314 3714 1.125633 TTGGGGCTAGACCGGAATAC 58.874 55.000 9.46 0.00 40.62 1.89
3315 3715 0.761702 TGGGGCTAGACCGGAATACC 60.762 60.000 9.46 2.11 40.62 2.73
3341 3749 0.041090 ATGTTGGGGGATGGTTGTCC 59.959 55.000 0.00 0.00 37.56 4.02
3363 3771 4.025396 CCATGCTGAACTTGTCGATATCAC 60.025 45.833 3.12 1.32 0.00 3.06
3380 3788 2.972348 TCACAGTGACCCCTTCTACTT 58.028 47.619 0.00 0.00 0.00 2.24
3398 3806 2.100252 ACTTTGTTCGACGAAGGTCTCA 59.900 45.455 11.25 1.93 42.56 3.27
3404 3812 3.644399 GACGAAGGTCTCACCGGGC 62.644 68.421 6.32 0.00 44.90 6.13
3422 3830 2.420129 GGGCACATCCGATAGTTGTTCT 60.420 50.000 0.00 0.00 34.94 3.01
3482 3890 7.155328 AGACAGAGACACTTTGTTTACATAGG 58.845 38.462 5.53 0.00 28.84 2.57
3493 3901 3.329520 TGTTTACATAGGTTCAGGCCACT 59.670 43.478 5.01 0.00 0.00 4.00
3496 3904 1.705186 ACATAGGTTCAGGCCACTGTT 59.295 47.619 5.01 0.00 45.14 3.16
3513 5575 3.707611 ACTGTTCAGTGTAACACCCTACA 59.292 43.478 4.58 0.00 41.43 2.74
3516 5578 4.591498 TGTTCAGTGTAACACCCTACATCT 59.409 41.667 0.00 0.00 41.43 2.90
3518 5580 6.268158 TGTTCAGTGTAACACCCTACATCTTA 59.732 38.462 0.00 0.00 41.43 2.10
3567 5635 3.244215 TGGTCAGTTACAAGCCTTCTCTG 60.244 47.826 0.00 0.00 0.00 3.35
3568 5636 2.739379 GTCAGTTACAAGCCTTCTCTGC 59.261 50.000 0.00 0.00 0.00 4.26
3572 5640 4.276926 CAGTTACAAGCCTTCTCTGCTTTT 59.723 41.667 0.00 0.00 46.47 2.27
3578 5646 2.905736 AGCCTTCTCTGCTTTTCTCTCT 59.094 45.455 0.00 0.00 34.87 3.10
3584 5652 4.252073 TCTCTGCTTTTCTCTCTGAATGC 58.748 43.478 0.00 0.00 36.08 3.56
3588 5656 3.244665 TGCTTTTCTCTCTGAATGCTGGA 60.245 43.478 0.00 0.00 36.32 3.86
3622 5690 5.690865 TCTAGCAAGTTTCCTTTCTCCAAA 58.309 37.500 0.00 0.00 0.00 3.28
3629 5697 3.849563 TTCCTTTCTCCAAAAGTCCGA 57.150 42.857 0.00 0.00 0.00 4.55
3631 5699 3.939066 TCCTTTCTCCAAAAGTCCGATC 58.061 45.455 0.00 0.00 0.00 3.69
3634 5702 0.535335 TCTCCAAAAGTCCGATCCCG 59.465 55.000 0.00 0.00 0.00 5.14
3636 5704 1.139058 CTCCAAAAGTCCGATCCCGAT 59.861 52.381 0.00 0.00 38.22 4.18
3637 5705 2.364324 CTCCAAAAGTCCGATCCCGATA 59.636 50.000 0.00 0.00 38.22 2.92
3638 5706 2.364324 TCCAAAAGTCCGATCCCGATAG 59.636 50.000 0.00 0.00 38.22 2.08
3639 5707 2.364324 CCAAAAGTCCGATCCCGATAGA 59.636 50.000 0.00 0.00 38.22 1.98
3640 5708 3.181469 CCAAAAGTCCGATCCCGATAGAA 60.181 47.826 0.00 0.00 38.22 2.10
3641 5709 4.051922 CAAAAGTCCGATCCCGATAGAAG 58.948 47.826 0.00 0.00 38.22 2.85
3642 5710 1.912417 AGTCCGATCCCGATAGAAGG 58.088 55.000 0.00 0.00 38.22 3.46
3643 5711 0.244178 GTCCGATCCCGATAGAAGGC 59.756 60.000 0.00 0.00 38.22 4.35
3644 5712 0.898789 TCCGATCCCGATAGAAGGCC 60.899 60.000 0.00 0.00 38.22 5.19
3645 5713 0.900647 CCGATCCCGATAGAAGGCCT 60.901 60.000 0.00 0.00 38.22 5.19
3646 5714 0.528470 CGATCCCGATAGAAGGCCTC 59.472 60.000 5.23 0.00 38.22 4.70
3647 5715 0.528470 GATCCCGATAGAAGGCCTCG 59.472 60.000 5.23 4.74 39.76 4.63
3649 5717 3.857764 CCGATAGAAGGCCTCGGT 58.142 61.111 19.50 0.00 45.30 4.69
3650 5718 1.660917 CCGATAGAAGGCCTCGGTC 59.339 63.158 19.50 8.42 45.30 4.79
3672 5740 1.202200 GGAACGAGATCCTCTGACGTG 60.202 57.143 0.00 0.00 37.28 4.49
3673 5741 1.469308 GAACGAGATCCTCTGACGTGT 59.531 52.381 0.00 0.00 37.28 4.49
3676 5861 3.079578 ACGAGATCCTCTGACGTGTTAA 58.920 45.455 0.00 0.00 35.91 2.01
3685 5870 5.981315 TCCTCTGACGTGTTAAAAACTACTG 59.019 40.000 0.00 0.00 0.00 2.74
3687 5872 4.508861 TCTGACGTGTTAAAAACTACTGCC 59.491 41.667 0.00 0.00 0.00 4.85
3688 5873 3.245754 TGACGTGTTAAAAACTACTGCCG 59.754 43.478 0.00 0.00 0.00 5.69
3717 5910 2.006888 CCTTTGCATATCACCGTTCGT 58.993 47.619 0.00 0.00 0.00 3.85
3724 5917 4.632251 TGCATATCACCGTTCGTTAAACAT 59.368 37.500 0.00 0.00 37.77 2.71
3726 5919 5.446741 GCATATCACCGTTCGTTAAACATGT 60.447 40.000 0.00 0.00 37.77 3.21
3729 5922 5.980698 TCACCGTTCGTTAAACATGTTAA 57.019 34.783 12.39 4.12 37.77 2.01
3731 5924 5.050227 TCACCGTTCGTTAAACATGTTAAGG 60.050 40.000 12.39 9.18 37.77 2.69
3735 5928 4.413495 TCGTTAAACATGTTAAGGCAGC 57.587 40.909 12.39 0.00 0.00 5.25
3751 5944 1.153756 AGCAGGTGGAAACCAAGGG 59.846 57.895 0.00 0.00 34.18 3.95
3756 5949 1.289530 AGGTGGAAACCAAGGGAACAA 59.710 47.619 0.00 0.00 34.18 2.83
3765 5978 1.341209 CCAAGGGAACAAAGCTCAACC 59.659 52.381 0.00 0.00 0.00 3.77
3873 6086 1.455248 GCCATTACCTTGCGTAACCA 58.545 50.000 0.00 0.00 39.75 3.67
3882 6095 1.933853 CTTGCGTAACCATAGCTCCAC 59.066 52.381 0.00 0.00 0.00 4.02
3887 6100 1.136305 GTAACCATAGCTCCACTGCGA 59.864 52.381 0.00 0.00 38.13 5.10
3888 6101 0.176680 AACCATAGCTCCACTGCGAG 59.823 55.000 0.00 0.00 38.13 5.03
3889 6102 0.972983 ACCATAGCTCCACTGCGAGT 60.973 55.000 0.00 0.00 38.13 4.18
3890 6103 0.529337 CCATAGCTCCACTGCGAGTG 60.529 60.000 8.73 8.73 45.53 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.724914 CTTCTTCCTCCTCCGCGCC 62.725 68.421 0.00 0.00 0.00 6.53
3 4 2.202810 CTTCTTCCTCCTCCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
4 5 1.435515 CTCTTCTTCCTCCTCCGCG 59.564 63.158 0.00 0.00 0.00 6.46
5 6 1.681486 CCCTCTTCTTCCTCCTCCGC 61.681 65.000 0.00 0.00 0.00 5.54
6 7 1.045911 CCCCTCTTCTTCCTCCTCCG 61.046 65.000 0.00 0.00 0.00 4.63
7 8 0.340208 TCCCCTCTTCTTCCTCCTCC 59.660 60.000 0.00 0.00 0.00 4.30
8 9 1.289530 TCTCCCCTCTTCTTCCTCCTC 59.710 57.143 0.00 0.00 0.00 3.71
9 10 1.398799 TCTCCCCTCTTCTTCCTCCT 58.601 55.000 0.00 0.00 0.00 3.69
10 11 2.487746 ATCTCCCCTCTTCTTCCTCC 57.512 55.000 0.00 0.00 0.00 4.30
11 12 2.897326 GCTATCTCCCCTCTTCTTCCTC 59.103 54.545 0.00 0.00 0.00 3.71
12 13 2.248686 TGCTATCTCCCCTCTTCTTCCT 59.751 50.000 0.00 0.00 0.00 3.36
13 14 2.683768 TGCTATCTCCCCTCTTCTTCC 58.316 52.381 0.00 0.00 0.00 3.46
14 15 4.762289 TTTGCTATCTCCCCTCTTCTTC 57.238 45.455 0.00 0.00 0.00 2.87
15 16 4.141298 CCATTTGCTATCTCCCCTCTTCTT 60.141 45.833 0.00 0.00 0.00 2.52
16 17 3.393941 CCATTTGCTATCTCCCCTCTTCT 59.606 47.826 0.00 0.00 0.00 2.85
17 18 3.392616 TCCATTTGCTATCTCCCCTCTTC 59.607 47.826 0.00 0.00 0.00 2.87
18 19 3.397527 TCCATTTGCTATCTCCCCTCTT 58.602 45.455 0.00 0.00 0.00 2.85
19 20 3.066208 TCCATTTGCTATCTCCCCTCT 57.934 47.619 0.00 0.00 0.00 3.69
20 21 3.308046 GGATCCATTTGCTATCTCCCCTC 60.308 52.174 6.95 0.00 0.00 4.30
21 22 2.646798 GGATCCATTTGCTATCTCCCCT 59.353 50.000 6.95 0.00 0.00 4.79
22 23 2.616510 CGGATCCATTTGCTATCTCCCC 60.617 54.545 13.41 0.00 0.00 4.81
23 24 2.616510 CCGGATCCATTTGCTATCTCCC 60.617 54.545 13.41 0.00 0.00 4.30
24 25 2.704572 CCGGATCCATTTGCTATCTCC 58.295 52.381 13.41 0.00 0.00 3.71
25 26 2.079925 GCCGGATCCATTTGCTATCTC 58.920 52.381 13.41 0.00 0.00 2.75
26 27 1.609061 CGCCGGATCCATTTGCTATCT 60.609 52.381 13.41 0.00 0.00 1.98
27 28 0.798776 CGCCGGATCCATTTGCTATC 59.201 55.000 13.41 0.00 0.00 2.08
28 29 0.606401 CCGCCGGATCCATTTGCTAT 60.606 55.000 13.41 0.00 0.00 2.97
29 30 1.227823 CCGCCGGATCCATTTGCTA 60.228 57.895 13.41 0.00 0.00 3.49
30 31 2.516930 CCGCCGGATCCATTTGCT 60.517 61.111 13.41 0.00 0.00 3.91
31 32 3.595758 CCCGCCGGATCCATTTGC 61.596 66.667 13.41 7.49 0.00 3.68
32 33 2.124320 ACCCGCCGGATCCATTTG 60.124 61.111 13.41 0.00 0.00 2.32
33 34 1.921869 AAGACCCGCCGGATCCATTT 61.922 55.000 13.41 0.00 0.00 2.32
34 35 2.375345 AAGACCCGCCGGATCCATT 61.375 57.895 13.41 0.00 0.00 3.16
35 36 2.768344 AAGACCCGCCGGATCCAT 60.768 61.111 13.41 0.00 0.00 3.41
36 37 3.781307 CAAGACCCGCCGGATCCA 61.781 66.667 13.41 0.00 0.00 3.41
37 38 4.547367 CCAAGACCCGCCGGATCC 62.547 72.222 5.05 0.00 0.00 3.36
38 39 4.547367 CCCAAGACCCGCCGGATC 62.547 72.222 5.05 0.00 0.00 3.36
39 40 2.957902 TATCCCAAGACCCGCCGGAT 62.958 60.000 5.05 0.00 37.16 4.18
40 41 3.682644 TATCCCAAGACCCGCCGGA 62.683 63.158 5.05 0.00 0.00 5.14
41 42 3.158648 TATCCCAAGACCCGCCGG 61.159 66.667 0.00 0.00 0.00 6.13
42 43 1.472662 ATCTATCCCAAGACCCGCCG 61.473 60.000 0.00 0.00 0.00 6.46
43 44 0.765510 AATCTATCCCAAGACCCGCC 59.234 55.000 0.00 0.00 0.00 6.13
44 45 2.640316 AAATCTATCCCAAGACCCGC 57.360 50.000 0.00 0.00 0.00 6.13
45 46 4.632153 CACTAAATCTATCCCAAGACCCG 58.368 47.826 0.00 0.00 0.00 5.28
46 47 4.141482 TGCACTAAATCTATCCCAAGACCC 60.141 45.833 0.00 0.00 0.00 4.46
47 48 5.036117 TGCACTAAATCTATCCCAAGACC 57.964 43.478 0.00 0.00 0.00 3.85
48 49 6.995091 AGATTGCACTAAATCTATCCCAAGAC 59.005 38.462 0.00 0.00 43.52 3.01
49 50 6.994496 CAGATTGCACTAAATCTATCCCAAGA 59.006 38.462 0.00 0.00 43.50 3.02
50 51 6.769822 ACAGATTGCACTAAATCTATCCCAAG 59.230 38.462 0.00 0.00 43.50 3.61
51 52 6.543465 CACAGATTGCACTAAATCTATCCCAA 59.457 38.462 0.00 0.00 43.50 4.12
52 53 6.057533 CACAGATTGCACTAAATCTATCCCA 58.942 40.000 0.00 0.00 43.50 4.37
53 54 6.291377 TCACAGATTGCACTAAATCTATCCC 58.709 40.000 0.00 0.00 43.50 3.85
54 55 7.094890 CCATCACAGATTGCACTAAATCTATCC 60.095 40.741 0.00 0.00 43.50 2.59
55 56 7.094890 CCCATCACAGATTGCACTAAATCTATC 60.095 40.741 0.00 0.00 43.50 2.08
56 57 6.713903 CCCATCACAGATTGCACTAAATCTAT 59.286 38.462 0.00 0.00 43.50 1.98
57 58 6.057533 CCCATCACAGATTGCACTAAATCTA 58.942 40.000 0.00 0.00 43.50 1.98
58 59 4.885907 CCCATCACAGATTGCACTAAATCT 59.114 41.667 0.00 0.00 45.69 2.40
59 60 4.037208 CCCCATCACAGATTGCACTAAATC 59.963 45.833 0.00 0.00 36.91 2.17
60 61 3.956199 CCCCATCACAGATTGCACTAAAT 59.044 43.478 0.00 0.00 0.00 1.40
61 62 3.355378 CCCCATCACAGATTGCACTAAA 58.645 45.455 0.00 0.00 0.00 1.85
62 63 2.945440 GCCCCATCACAGATTGCACTAA 60.945 50.000 0.00 0.00 0.00 2.24
63 64 1.408683 GCCCCATCACAGATTGCACTA 60.409 52.381 0.00 0.00 0.00 2.74
64 65 0.682209 GCCCCATCACAGATTGCACT 60.682 55.000 0.00 0.00 0.00 4.40
65 66 1.669999 GGCCCCATCACAGATTGCAC 61.670 60.000 0.00 0.00 0.00 4.57
66 67 1.380246 GGCCCCATCACAGATTGCA 60.380 57.895 0.00 0.00 0.00 4.08
67 68 2.484062 CGGCCCCATCACAGATTGC 61.484 63.158 0.00 0.00 0.00 3.56
68 69 1.825191 CCGGCCCCATCACAGATTG 60.825 63.158 0.00 0.00 0.00 2.67
69 70 2.597340 CCGGCCCCATCACAGATT 59.403 61.111 0.00 0.00 0.00 2.40
70 71 3.492353 CCCGGCCCCATCACAGAT 61.492 66.667 0.00 0.00 0.00 2.90
111 112 4.096816 TATGGGGGAGTCCGGGCA 62.097 66.667 9.71 0.00 36.01 5.36
112 113 3.557290 GTATGGGGGAGTCCGGGC 61.557 72.222 0.00 0.00 36.01 6.13
113 114 2.847715 GGTATGGGGGAGTCCGGG 60.848 72.222 0.00 0.00 36.01 5.73
114 115 2.847715 GGGTATGGGGGAGTCCGG 60.848 72.222 2.26 0.00 36.01 5.14
115 116 3.231736 CGGGTATGGGGGAGTCCG 61.232 72.222 2.26 0.00 36.01 4.79
116 117 1.691689 AACGGGTATGGGGGAGTCC 60.692 63.158 0.00 0.00 0.00 3.85
117 118 1.693152 GGAACGGGTATGGGGGAGTC 61.693 65.000 0.00 0.00 0.00 3.36
118 119 1.691689 GGAACGGGTATGGGGGAGT 60.692 63.158 0.00 0.00 0.00 3.85
119 120 1.060163 ATGGAACGGGTATGGGGGAG 61.060 60.000 0.00 0.00 0.00 4.30
120 121 0.268263 TATGGAACGGGTATGGGGGA 59.732 55.000 0.00 0.00 0.00 4.81
121 122 1.368374 ATATGGAACGGGTATGGGGG 58.632 55.000 0.00 0.00 0.00 5.40
122 123 3.153919 CAAATATGGAACGGGTATGGGG 58.846 50.000 0.00 0.00 0.00 4.96
136 137 7.667219 ACACTTCTTATATCCAGCCCAAATATG 59.333 37.037 0.00 0.00 0.00 1.78
137 138 7.759607 ACACTTCTTATATCCAGCCCAAATAT 58.240 34.615 0.00 0.00 0.00 1.28
138 139 7.072454 AGACACTTCTTATATCCAGCCCAAATA 59.928 37.037 0.00 0.00 0.00 1.40
139 140 6.018433 ACACTTCTTATATCCAGCCCAAAT 57.982 37.500 0.00 0.00 0.00 2.32
140 141 5.191722 AGACACTTCTTATATCCAGCCCAAA 59.808 40.000 0.00 0.00 0.00 3.28
141 142 4.721776 AGACACTTCTTATATCCAGCCCAA 59.278 41.667 0.00 0.00 0.00 4.12
142 143 4.101585 CAGACACTTCTTATATCCAGCCCA 59.898 45.833 0.00 0.00 0.00 5.36
143 144 4.101741 ACAGACACTTCTTATATCCAGCCC 59.898 45.833 0.00 0.00 0.00 5.19
144 145 5.163405 TGACAGACACTTCTTATATCCAGCC 60.163 44.000 0.00 0.00 0.00 4.85
145 146 5.907207 TGACAGACACTTCTTATATCCAGC 58.093 41.667 0.00 0.00 0.00 4.85
146 147 7.106439 ACTGACAGACACTTCTTATATCCAG 57.894 40.000 10.08 0.00 0.00 3.86
147 148 7.482169 AACTGACAGACACTTCTTATATCCA 57.518 36.000 10.08 0.00 0.00 3.41
148 149 6.693545 CGAACTGACAGACACTTCTTATATCC 59.306 42.308 10.08 0.00 0.00 2.59
149 150 6.693545 CCGAACTGACAGACACTTCTTATATC 59.306 42.308 10.08 0.00 0.00 1.63
150 151 6.377429 TCCGAACTGACAGACACTTCTTATAT 59.623 38.462 10.08 0.00 0.00 0.86
151 152 5.708697 TCCGAACTGACAGACACTTCTTATA 59.291 40.000 10.08 0.00 0.00 0.98
152 153 4.523173 TCCGAACTGACAGACACTTCTTAT 59.477 41.667 10.08 0.00 0.00 1.73
153 154 3.887110 TCCGAACTGACAGACACTTCTTA 59.113 43.478 10.08 0.00 0.00 2.10
154 155 2.693591 TCCGAACTGACAGACACTTCTT 59.306 45.455 10.08 0.00 0.00 2.52
155 156 2.034812 GTCCGAACTGACAGACACTTCT 59.965 50.000 10.08 0.00 35.29 2.85
156 157 2.395654 GTCCGAACTGACAGACACTTC 58.604 52.381 10.08 1.44 35.29 3.01
157 158 1.269102 CGTCCGAACTGACAGACACTT 60.269 52.381 10.08 0.00 34.88 3.16
158 159 0.311165 CGTCCGAACTGACAGACACT 59.689 55.000 10.08 0.00 34.88 3.55
159 160 0.030369 ACGTCCGAACTGACAGACAC 59.970 55.000 10.08 0.00 34.88 3.67
160 161 0.742505 AACGTCCGAACTGACAGACA 59.257 50.000 10.08 0.00 34.88 3.41
161 162 1.521423 CAAACGTCCGAACTGACAGAC 59.479 52.381 10.08 2.02 34.88 3.51
162 163 1.406180 TCAAACGTCCGAACTGACAGA 59.594 47.619 10.08 0.00 34.88 3.41
163 164 1.787155 CTCAAACGTCCGAACTGACAG 59.213 52.381 0.00 0.00 34.88 3.51
164 165 1.847818 CTCAAACGTCCGAACTGACA 58.152 50.000 0.00 0.00 34.88 3.58
165 166 0.507358 GCTCAAACGTCCGAACTGAC 59.493 55.000 0.00 0.00 0.00 3.51
166 167 0.599204 GGCTCAAACGTCCGAACTGA 60.599 55.000 0.00 0.00 0.00 3.41
167 168 1.566018 GGGCTCAAACGTCCGAACTG 61.566 60.000 0.00 0.00 0.00 3.16
168 169 1.301479 GGGCTCAAACGTCCGAACT 60.301 57.895 0.00 0.00 0.00 3.01
169 170 2.322830 GGGGCTCAAACGTCCGAAC 61.323 63.158 0.00 0.00 0.00 3.95
170 171 2.031465 GGGGCTCAAACGTCCGAA 59.969 61.111 0.00 0.00 0.00 4.30
171 172 4.367023 CGGGGCTCAAACGTCCGA 62.367 66.667 3.70 0.00 42.94 4.55
172 173 4.675029 ACGGGGCTCAAACGTCCG 62.675 66.667 7.93 7.93 45.42 4.79
173 174 1.895231 AAACGGGGCTCAAACGTCC 60.895 57.895 0.00 0.00 40.31 4.79
174 175 1.161563 TCAAACGGGGCTCAAACGTC 61.162 55.000 0.00 0.00 40.31 4.34
175 176 0.536460 ATCAAACGGGGCTCAAACGT 60.536 50.000 0.00 0.00 43.43 3.99
176 177 1.396996 CTATCAAACGGGGCTCAAACG 59.603 52.381 0.00 0.00 0.00 3.60
177 178 1.743394 CCTATCAAACGGGGCTCAAAC 59.257 52.381 0.00 0.00 0.00 2.93
178 179 1.340600 CCCTATCAAACGGGGCTCAAA 60.341 52.381 0.00 0.00 36.78 2.69
179 180 0.254747 CCCTATCAAACGGGGCTCAA 59.745 55.000 0.00 0.00 36.78 3.02
180 181 1.912220 CCCTATCAAACGGGGCTCA 59.088 57.895 0.00 0.00 36.78 4.26
181 182 4.878878 CCCTATCAAACGGGGCTC 57.121 61.111 0.00 0.00 36.78 4.70
185 186 2.203153 CGGCCCCTATCAAACGGG 60.203 66.667 0.00 0.00 40.29 5.28
186 187 1.523032 GACGGCCCCTATCAAACGG 60.523 63.158 0.00 0.00 0.00 4.44
187 188 0.810031 CAGACGGCCCCTATCAAACG 60.810 60.000 0.00 0.00 0.00 3.60
188 189 0.463833 CCAGACGGCCCCTATCAAAC 60.464 60.000 0.00 0.00 0.00 2.93
189 190 1.632018 CCCAGACGGCCCCTATCAAA 61.632 60.000 0.00 0.00 0.00 2.69
190 191 2.070039 CCCAGACGGCCCCTATCAA 61.070 63.158 0.00 0.00 0.00 2.57
191 192 2.445845 CCCAGACGGCCCCTATCA 60.446 66.667 0.00 0.00 0.00 2.15
192 193 2.446036 ACCCAGACGGCCCCTATC 60.446 66.667 0.00 0.00 33.26 2.08
193 194 2.446036 GACCCAGACGGCCCCTAT 60.446 66.667 0.00 0.00 33.26 2.57
194 195 3.549433 TTGACCCAGACGGCCCCTA 62.549 63.158 0.00 0.00 33.26 3.53
195 196 4.974438 TTGACCCAGACGGCCCCT 62.974 66.667 0.00 0.00 33.26 4.79
196 197 2.987355 TTTTTGACCCAGACGGCCCC 62.987 60.000 0.00 0.00 33.26 5.80
197 198 1.529713 TTTTTGACCCAGACGGCCC 60.530 57.895 0.00 0.00 33.26 5.80
198 199 4.167597 TTTTTGACCCAGACGGCC 57.832 55.556 0.00 0.00 33.26 6.13
212 213 2.616842 GTCACTGACCGGTCATGTTTTT 59.383 45.455 36.21 14.32 39.13 1.94
213 214 2.158813 AGTCACTGACCGGTCATGTTTT 60.159 45.455 36.21 19.45 39.13 2.43
214 215 1.416401 AGTCACTGACCGGTCATGTTT 59.584 47.619 36.21 22.07 39.13 2.83
215 216 1.048601 AGTCACTGACCGGTCATGTT 58.951 50.000 36.21 21.00 39.13 2.71
216 217 0.318441 CAGTCACTGACCGGTCATGT 59.682 55.000 36.21 29.61 39.13 3.21
217 218 0.603065 TCAGTCACTGACCGGTCATG 59.397 55.000 36.21 30.88 39.13 3.07
218 219 1.000955 GTTCAGTCACTGACCGGTCAT 59.999 52.381 36.21 22.96 40.46 3.06
219 220 0.387929 GTTCAGTCACTGACCGGTCA 59.612 55.000 34.13 34.13 40.46 4.02
220 221 0.663568 CGTTCAGTCACTGACCGGTC 60.664 60.000 28.17 28.17 41.46 4.79
221 222 1.362717 CGTTCAGTCACTGACCGGT 59.637 57.895 16.53 6.92 41.46 5.28
222 223 4.245054 CGTTCAGTCACTGACCGG 57.755 61.111 16.53 0.00 41.46 5.28
223 224 2.022129 GCCGTTCAGTCACTGACCG 61.022 63.158 17.30 17.30 44.00 4.79
224 225 0.667792 GAGCCGTTCAGTCACTGACC 60.668 60.000 7.12 0.00 40.46 4.02
225 226 1.004277 CGAGCCGTTCAGTCACTGAC 61.004 60.000 7.12 2.13 40.46 3.51
226 227 1.285950 CGAGCCGTTCAGTCACTGA 59.714 57.895 2.36 2.36 38.87 3.41
227 228 1.004277 GACGAGCCGTTCAGTCACTG 61.004 60.000 0.00 0.00 41.37 3.66
228 229 1.286260 GACGAGCCGTTCAGTCACT 59.714 57.895 1.80 0.00 41.37 3.41
229 230 1.733399 GGACGAGCCGTTCAGTCAC 60.733 63.158 1.80 0.00 41.37 3.67
230 231 2.649034 GGACGAGCCGTTCAGTCA 59.351 61.111 1.80 0.00 41.37 3.41
239 240 1.664965 GCATATGTCCGGACGAGCC 60.665 63.158 28.70 12.52 0.00 4.70
240 241 1.664965 GGCATATGTCCGGACGAGC 60.665 63.158 28.70 25.81 0.00 5.03
241 242 1.371758 CGGCATATGTCCGGACGAG 60.372 63.158 28.70 18.48 42.99 4.18
242 243 2.725641 CGGCATATGTCCGGACGA 59.274 61.111 28.70 19.82 42.99 4.20
248 249 0.250467 AGCATCCACGGCATATGTCC 60.250 55.000 0.75 4.02 0.00 4.02
249 250 1.151668 GAGCATCCACGGCATATGTC 58.848 55.000 4.29 0.00 0.00 3.06
250 251 0.761187 AGAGCATCCACGGCATATGT 59.239 50.000 4.29 0.00 33.66 2.29
251 252 2.749280 TAGAGCATCCACGGCATATG 57.251 50.000 0.00 0.00 33.66 1.78
252 253 2.027745 CCTTAGAGCATCCACGGCATAT 60.028 50.000 0.00 0.00 33.66 1.78
253 254 1.344438 CCTTAGAGCATCCACGGCATA 59.656 52.381 0.00 0.00 33.66 3.14
254 255 0.107456 CCTTAGAGCATCCACGGCAT 59.893 55.000 0.00 0.00 33.66 4.40
255 256 1.522092 CCTTAGAGCATCCACGGCA 59.478 57.895 0.00 0.00 33.66 5.69
256 257 1.889573 GCCTTAGAGCATCCACGGC 60.890 63.158 0.00 0.00 34.60 5.68
257 258 0.249657 GAGCCTTAGAGCATCCACGG 60.250 60.000 0.00 0.00 33.66 4.94
258 259 0.596083 CGAGCCTTAGAGCATCCACG 60.596 60.000 0.00 0.00 33.66 4.94
259 260 0.747255 TCGAGCCTTAGAGCATCCAC 59.253 55.000 0.00 0.00 33.66 4.02
260 261 1.035923 CTCGAGCCTTAGAGCATCCA 58.964 55.000 0.00 0.00 33.66 3.41
261 262 1.323412 TCTCGAGCCTTAGAGCATCC 58.677 55.000 7.81 0.00 33.66 3.51
262 263 2.352617 CCATCTCGAGCCTTAGAGCATC 60.353 54.545 7.81 0.00 34.66 3.91
263 264 1.617850 CCATCTCGAGCCTTAGAGCAT 59.382 52.381 7.81 0.00 34.66 3.79
264 265 1.035923 CCATCTCGAGCCTTAGAGCA 58.964 55.000 7.81 0.00 34.66 4.26
265 266 0.319469 GCCATCTCGAGCCTTAGAGC 60.319 60.000 7.81 0.00 34.66 4.09
266 267 1.035923 TGCCATCTCGAGCCTTAGAG 58.964 55.000 7.81 0.00 35.91 2.43
267 268 1.615883 GATGCCATCTCGAGCCTTAGA 59.384 52.381 7.81 0.00 0.00 2.10
268 269 1.668337 CGATGCCATCTCGAGCCTTAG 60.668 57.143 7.81 0.00 38.38 2.18
269 270 0.315251 CGATGCCATCTCGAGCCTTA 59.685 55.000 7.81 0.00 38.38 2.69
270 271 1.068753 CGATGCCATCTCGAGCCTT 59.931 57.895 7.81 0.00 38.38 4.35
271 272 1.829970 TCGATGCCATCTCGAGCCT 60.830 57.895 7.81 0.00 40.01 4.58
272 273 2.730733 TCGATGCCATCTCGAGCC 59.269 61.111 7.81 0.00 40.01 4.70
275 276 1.164041 TACGCTCGATGCCATCTCGA 61.164 55.000 14.57 4.44 42.44 4.04
276 277 0.999228 GTACGCTCGATGCCATCTCG 60.999 60.000 2.75 6.27 38.78 4.04
277 278 0.999228 CGTACGCTCGATGCCATCTC 60.999 60.000 0.52 0.00 38.78 2.75
278 279 1.008424 CGTACGCTCGATGCCATCT 60.008 57.895 0.52 0.00 38.78 2.90
279 280 0.387367 ATCGTACGCTCGATGCCATC 60.387 55.000 11.24 0.00 46.58 3.51
280 281 1.660355 ATCGTACGCTCGATGCCAT 59.340 52.632 11.24 0.00 46.58 4.40
281 282 3.116463 ATCGTACGCTCGATGCCA 58.884 55.556 11.24 0.00 46.58 4.92
286 287 0.376152 GAGTCCAATCGTACGCTCGA 59.624 55.000 11.24 5.11 43.86 4.04
287 288 0.591741 GGAGTCCAATCGTACGCTCG 60.592 60.000 11.24 0.26 0.00 5.03
288 289 0.248949 GGGAGTCCAATCGTACGCTC 60.249 60.000 11.24 9.94 0.00 5.03
289 290 1.814527 GGGAGTCCAATCGTACGCT 59.185 57.895 11.24 0.00 0.00 5.07
290 291 1.588139 CGGGAGTCCAATCGTACGC 60.588 63.158 11.24 0.00 0.00 4.42
291 292 0.524816 CACGGGAGTCCAATCGTACG 60.525 60.000 12.30 9.53 44.67 3.67
292 293 0.179119 CCACGGGAGTCCAATCGTAC 60.179 60.000 12.30 0.00 44.67 3.67
293 294 1.952102 GCCACGGGAGTCCAATCGTA 61.952 60.000 12.30 0.00 44.67 3.43
294 295 2.978824 CCACGGGAGTCCAATCGT 59.021 61.111 12.30 8.87 44.67 3.73
295 296 2.511600 GCCACGGGAGTCCAATCG 60.512 66.667 12.30 8.17 44.67 3.34
296 297 0.744771 GAAGCCACGGGAGTCCAATC 60.745 60.000 12.30 0.00 44.67 2.67
297 298 1.299976 GAAGCCACGGGAGTCCAAT 59.700 57.895 12.30 0.00 44.67 3.16
298 299 2.747686 GAAGCCACGGGAGTCCAA 59.252 61.111 12.30 0.00 44.67 3.53
299 300 3.691342 CGAAGCCACGGGAGTCCA 61.691 66.667 12.30 0.00 44.67 4.02
300 301 3.358076 CTCGAAGCCACGGGAGTCC 62.358 68.421 0.00 0.00 44.67 3.85
301 302 2.182030 CTCGAAGCCACGGGAGTC 59.818 66.667 0.00 0.00 44.67 3.36
303 304 2.125912 CACTCGAAGCCACGGGAG 60.126 66.667 7.01 0.00 37.20 4.30
304 305 2.599281 TCACTCGAAGCCACGGGA 60.599 61.111 7.01 0.00 37.20 5.14
305 306 2.432628 GTCACTCGAAGCCACGGG 60.433 66.667 0.00 0.00 39.85 5.28
306 307 2.432628 GGTCACTCGAAGCCACGG 60.433 66.667 0.61 0.00 0.00 4.94
307 308 2.432628 GGGTCACTCGAAGCCACG 60.433 66.667 0.00 0.00 34.37 4.94
308 309 1.374758 CTGGGTCACTCGAAGCCAC 60.375 63.158 2.40 0.00 39.29 5.01
309 310 3.059982 CTGGGTCACTCGAAGCCA 58.940 61.111 6.37 6.37 41.80 4.75
310 311 2.435059 GCTGGGTCACTCGAAGCC 60.435 66.667 0.00 0.00 34.81 4.35
311 312 2.029844 GTGCTGGGTCACTCGAAGC 61.030 63.158 0.00 0.00 34.29 3.86
312 313 1.374758 GGTGCTGGGTCACTCGAAG 60.375 63.158 0.00 0.00 37.16 3.79
313 314 2.741092 GGTGCTGGGTCACTCGAA 59.259 61.111 0.00 0.00 37.16 3.71
314 315 3.311110 GGGTGCTGGGTCACTCGA 61.311 66.667 0.00 0.00 37.16 4.04
315 316 3.314331 AGGGTGCTGGGTCACTCG 61.314 66.667 0.00 0.00 42.14 4.18
316 317 2.348998 CAGGGTGCTGGGTCACTC 59.651 66.667 0.00 0.00 37.71 3.51
317 318 3.958860 GCAGGGTGCTGGGTCACT 61.959 66.667 0.00 0.00 40.96 3.41
318 319 4.269523 TGCAGGGTGCTGGGTCAC 62.270 66.667 0.00 0.00 45.31 3.67
319 320 4.269523 GTGCAGGGTGCTGGGTCA 62.270 66.667 0.00 0.00 45.31 4.02
320 321 3.790416 TTGTGCAGGGTGCTGGGTC 62.790 63.158 0.00 0.00 45.31 4.46
321 322 2.870035 TTTTGTGCAGGGTGCTGGGT 62.870 55.000 0.00 0.00 45.31 4.51
322 323 2.132996 TTTTGTGCAGGGTGCTGGG 61.133 57.895 0.00 0.00 45.31 4.45
323 324 1.067916 GTTTTGTGCAGGGTGCTGG 59.932 57.895 0.00 0.00 45.31 4.85
324 325 1.067916 GGTTTTGTGCAGGGTGCTG 59.932 57.895 0.00 0.00 45.31 4.41
325 326 1.076044 AGGTTTTGTGCAGGGTGCT 60.076 52.632 0.00 0.00 45.31 4.40
326 327 1.067916 CAGGTTTTGTGCAGGGTGC 59.932 57.895 0.00 0.00 45.29 5.01
327 328 1.741525 CCAGGTTTTGTGCAGGGTG 59.258 57.895 0.00 0.00 0.00 4.61
328 329 1.457455 CCCAGGTTTTGTGCAGGGT 60.457 57.895 0.00 0.00 0.00 4.34
329 330 1.457455 ACCCAGGTTTTGTGCAGGG 60.457 57.895 1.98 1.98 42.07 4.45
330 331 1.741525 CACCCAGGTTTTGTGCAGG 59.258 57.895 0.00 0.00 0.00 4.85
334 335 2.749621 GAGATAGCACCCAGGTTTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
335 336 2.290960 GGAGATAGCACCCAGGTTTTGT 60.291 50.000 0.00 0.00 0.00 2.83
336 337 2.290896 TGGAGATAGCACCCAGGTTTTG 60.291 50.000 0.00 0.00 0.00 2.44
337 338 1.992557 TGGAGATAGCACCCAGGTTTT 59.007 47.619 0.00 0.00 0.00 2.43
338 339 1.282157 GTGGAGATAGCACCCAGGTTT 59.718 52.381 0.00 0.00 0.00 3.27
339 340 0.912486 GTGGAGATAGCACCCAGGTT 59.088 55.000 0.00 0.00 0.00 3.50
340 341 0.043334 AGTGGAGATAGCACCCAGGT 59.957 55.000 0.00 0.00 0.00 4.00
341 342 1.689273 GTAGTGGAGATAGCACCCAGG 59.311 57.143 0.00 0.00 0.00 4.45
342 343 2.388735 TGTAGTGGAGATAGCACCCAG 58.611 52.381 0.00 0.00 0.00 4.45
343 344 2.543037 TGTAGTGGAGATAGCACCCA 57.457 50.000 0.00 0.00 0.00 4.51
344 345 3.798202 CTTTGTAGTGGAGATAGCACCC 58.202 50.000 0.00 0.00 0.00 4.61
345 346 3.118592 AGCTTTGTAGTGGAGATAGCACC 60.119 47.826 0.00 0.00 0.00 5.01
346 347 4.130286 AGCTTTGTAGTGGAGATAGCAC 57.870 45.455 0.00 0.00 0.00 4.40
347 348 4.507710 CAAGCTTTGTAGTGGAGATAGCA 58.492 43.478 0.00 0.00 0.00 3.49
348 349 3.311048 GCAAGCTTTGTAGTGGAGATAGC 59.689 47.826 0.00 0.00 0.00 2.97
349 350 4.507710 TGCAAGCTTTGTAGTGGAGATAG 58.492 43.478 0.00 0.00 0.00 2.08
350 351 4.507710 CTGCAAGCTTTGTAGTGGAGATA 58.492 43.478 0.00 0.00 38.39 1.98
351 352 3.341823 CTGCAAGCTTTGTAGTGGAGAT 58.658 45.455 0.00 0.00 38.39 2.75
352 353 2.771089 CTGCAAGCTTTGTAGTGGAGA 58.229 47.619 0.00 0.00 38.39 3.71
366 367 0.250640 AGGAACAGGACTGCTGCAAG 60.251 55.000 3.02 0.51 0.00 4.01
367 368 1.002430 CTAGGAACAGGACTGCTGCAA 59.998 52.381 3.02 0.00 0.00 4.08
368 369 0.610174 CTAGGAACAGGACTGCTGCA 59.390 55.000 0.88 0.88 0.00 4.41
369 370 0.898320 TCTAGGAACAGGACTGCTGC 59.102 55.000 0.00 0.00 0.00 5.25
370 371 2.451490 TCTCTAGGAACAGGACTGCTG 58.549 52.381 0.00 0.00 0.00 4.41
371 372 2.909504 TCTCTAGGAACAGGACTGCT 57.090 50.000 0.00 0.00 0.00 4.24
372 373 3.963428 TTTCTCTAGGAACAGGACTGC 57.037 47.619 0.00 0.00 33.13 4.40
393 394 6.376018 TGGTCACAAACTACTGCTAACTTTTT 59.624 34.615 0.00 0.00 0.00 1.94
394 395 5.883673 TGGTCACAAACTACTGCTAACTTTT 59.116 36.000 0.00 0.00 0.00 2.27
395 396 5.433526 TGGTCACAAACTACTGCTAACTTT 58.566 37.500 0.00 0.00 0.00 2.66
396 397 5.031066 TGGTCACAAACTACTGCTAACTT 57.969 39.130 0.00 0.00 0.00 2.66
397 398 4.682778 TGGTCACAAACTACTGCTAACT 57.317 40.909 0.00 0.00 0.00 2.24
398 399 5.689819 CATTGGTCACAAACTACTGCTAAC 58.310 41.667 0.00 0.00 40.55 2.34
399 400 4.215399 GCATTGGTCACAAACTACTGCTAA 59.785 41.667 0.00 0.00 40.46 3.09
400 401 3.751175 GCATTGGTCACAAACTACTGCTA 59.249 43.478 0.00 0.00 40.46 3.49
401 402 2.554032 GCATTGGTCACAAACTACTGCT 59.446 45.455 0.00 0.00 40.46 4.24
402 403 2.293122 TGCATTGGTCACAAACTACTGC 59.707 45.455 0.00 0.00 42.85 4.40
403 404 3.304659 GGTGCATTGGTCACAAACTACTG 60.305 47.826 0.00 0.00 40.55 2.74
404 405 2.884639 GGTGCATTGGTCACAAACTACT 59.115 45.455 0.00 0.00 40.55 2.57
405 406 2.621055 TGGTGCATTGGTCACAAACTAC 59.379 45.455 0.00 0.00 40.55 2.73
406 407 2.884012 CTGGTGCATTGGTCACAAACTA 59.116 45.455 0.00 0.00 40.55 2.24
407 408 1.682854 CTGGTGCATTGGTCACAAACT 59.317 47.619 0.00 0.00 40.55 2.66
408 409 1.869342 GCTGGTGCATTGGTCACAAAC 60.869 52.381 0.00 0.00 40.55 2.93
409 410 0.388659 GCTGGTGCATTGGTCACAAA 59.611 50.000 0.00 0.00 40.55 2.83
410 411 0.754587 TGCTGGTGCATTGGTCACAA 60.755 50.000 0.00 0.00 45.31 3.33
411 412 1.152798 TGCTGGTGCATTGGTCACA 60.153 52.632 0.00 0.00 45.31 3.58
412 413 3.762293 TGCTGGTGCATTGGTCAC 58.238 55.556 0.00 0.00 45.31 3.67
421 422 0.462759 GGTCTAGGTGATGCTGGTGC 60.463 60.000 0.00 0.00 40.20 5.01
422 423 0.179100 CGGTCTAGGTGATGCTGGTG 60.179 60.000 0.00 0.00 0.00 4.17
423 424 0.324368 TCGGTCTAGGTGATGCTGGT 60.324 55.000 0.00 0.00 0.00 4.00
424 425 0.387202 CTCGGTCTAGGTGATGCTGG 59.613 60.000 0.00 0.00 0.00 4.85
425 426 0.249238 GCTCGGTCTAGGTGATGCTG 60.249 60.000 0.00 0.00 0.00 4.41
426 427 0.396417 AGCTCGGTCTAGGTGATGCT 60.396 55.000 0.00 0.00 0.00 3.79
427 428 0.031449 GAGCTCGGTCTAGGTGATGC 59.969 60.000 0.00 0.00 0.00 3.91
428 429 1.336440 CTGAGCTCGGTCTAGGTGATG 59.664 57.143 14.84 0.00 0.00 3.07
429 430 1.064314 ACTGAGCTCGGTCTAGGTGAT 60.064 52.381 22.85 0.00 0.00 3.06
430 431 0.328592 ACTGAGCTCGGTCTAGGTGA 59.671 55.000 22.85 0.00 0.00 4.02
431 432 0.453793 CACTGAGCTCGGTCTAGGTG 59.546 60.000 25.57 9.62 32.07 4.00
432 433 0.681564 CCACTGAGCTCGGTCTAGGT 60.682 60.000 25.57 0.00 32.07 3.08
433 434 0.394488 TCCACTGAGCTCGGTCTAGG 60.394 60.000 25.57 22.29 32.07 3.02
434 435 1.133407 GTTCCACTGAGCTCGGTCTAG 59.867 57.143 25.57 16.48 32.07 2.43
441 442 3.027974 AGTTAACGTTCCACTGAGCTC 57.972 47.619 2.82 6.82 0.00 4.09
446 447 6.114221 TCTTTCAAAGTTAACGTTCCACTG 57.886 37.500 2.82 0.00 0.00 3.66
458 459 4.973663 CGCGTGGTAATTTCTTTCAAAGTT 59.026 37.500 0.00 0.00 0.00 2.66
459 460 4.273969 TCGCGTGGTAATTTCTTTCAAAGT 59.726 37.500 5.77 0.00 0.00 2.66
460 461 4.778904 TCGCGTGGTAATTTCTTTCAAAG 58.221 39.130 5.77 0.00 0.00 2.77
468 474 1.022451 TGGCCTCGCGTGGTAATTTC 61.022 55.000 26.41 10.00 0.00 2.17
472 478 1.003112 ATTTGGCCTCGCGTGGTAA 60.003 52.632 26.41 18.92 0.00 2.85
473 479 1.448893 GATTTGGCCTCGCGTGGTA 60.449 57.895 26.41 14.44 0.00 3.25
474 480 2.746277 GATTTGGCCTCGCGTGGT 60.746 61.111 26.41 8.00 0.00 4.16
475 481 1.656818 ATTGATTTGGCCTCGCGTGG 61.657 55.000 22.48 22.48 0.00 4.94
476 482 0.248215 GATTGATTTGGCCTCGCGTG 60.248 55.000 5.77 2.75 0.00 5.34
478 484 0.734889 AAGATTGATTTGGCCTCGCG 59.265 50.000 3.32 0.00 0.00 5.87
479 485 2.287248 GCTAAGATTGATTTGGCCTCGC 60.287 50.000 3.32 0.00 0.00 5.03
480 486 2.291741 GGCTAAGATTGATTTGGCCTCG 59.708 50.000 3.32 0.00 45.53 4.63
481 487 3.998099 GGCTAAGATTGATTTGGCCTC 57.002 47.619 3.32 0.00 45.53 4.70
513 519 0.249826 CATGGCCAAACACCCAACAC 60.250 55.000 10.96 0.00 34.25 3.32
514 520 0.689080 ACATGGCCAAACACCCAACA 60.689 50.000 10.96 0.00 34.25 3.33
641 647 1.160137 CTCCGCCTTCTTTGTTCAGG 58.840 55.000 0.00 0.00 0.00 3.86
665 671 1.492319 CGGAAAAGGCGTTCGACACA 61.492 55.000 0.00 0.00 0.00 3.72
667 673 1.957186 CCGGAAAAGGCGTTCGACA 60.957 57.895 0.00 0.00 0.00 4.35
722 739 0.397564 GTAACGGAACTTGGGACCCA 59.602 55.000 9.95 9.95 0.00 4.51
729 840 2.476241 GGGTACAACGTAACGGAACTTG 59.524 50.000 0.00 0.00 0.00 3.16
765 876 1.273606 TGAGGCCTCTGTCGAAAAGAG 59.726 52.381 32.28 16.13 40.79 2.85
810 921 2.960659 CTCGCAGCCAGCTGATCG 60.961 66.667 23.40 16.96 46.30 3.69
837 948 2.154798 TTTCACTCTCGAGCGGGTGG 62.155 60.000 22.74 11.47 0.00 4.61
887 999 0.320421 AAGATGTCAACCGGTGGACG 60.320 55.000 32.00 11.86 43.80 4.79
894 1006 0.167470 CAGCAGCAAGATGTCAACCG 59.833 55.000 0.00 0.00 0.00 4.44
895 1007 0.524862 CCAGCAGCAAGATGTCAACC 59.475 55.000 0.00 0.00 0.00 3.77
912 1024 2.202236 GAATCCTGGCAGCAGGTCCA 62.202 60.000 9.56 0.00 42.79 4.02
926 1038 0.390735 ACGTGCTGGTTACCGAATCC 60.391 55.000 0.00 0.00 0.00 3.01
936 1048 2.480845 GTCTTTTCTGTACGTGCTGGT 58.519 47.619 10.40 0.00 0.00 4.00
937 1049 1.455786 CGTCTTTTCTGTACGTGCTGG 59.544 52.381 10.40 1.27 32.16 4.85
953 1065 2.203788 TGGACCTTGGAGCCGTCT 60.204 61.111 0.00 0.00 0.00 4.18
954 1066 2.047179 GTGGACCTTGGAGCCGTC 60.047 66.667 0.00 0.00 0.00 4.79
982 1095 2.230264 TGCACGTATCATCGCGCAG 61.230 57.895 8.75 0.00 42.43 5.18
1047 1160 0.168788 GTACGATCCCAACGACGACA 59.831 55.000 0.00 0.00 34.70 4.35
1131 1245 0.321653 CTTTTCCACTCCCCACCGAG 60.322 60.000 0.00 0.00 35.88 4.63
1189 1308 2.033801 CCATCATGCGGTGGAATTTCTC 59.966 50.000 5.90 0.00 37.72 2.87
1192 1311 1.113788 CCCATCATGCGGTGGAATTT 58.886 50.000 11.70 0.00 37.72 1.82
1317 1438 2.428085 GGAGGCGAAGAGGGAGGAC 61.428 68.421 0.00 0.00 0.00 3.85
1368 1489 1.975327 CGGCAGGAAACAGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
1509 1639 0.670854 GCCAGGAGAACCGAGACAAC 60.671 60.000 0.00 0.00 41.83 3.32
1511 1641 2.636412 CGCCAGGAGAACCGAGACA 61.636 63.158 0.00 0.00 41.83 3.41
1512 1642 2.156051 AACGCCAGGAGAACCGAGAC 62.156 60.000 0.00 0.00 41.83 3.36
1513 1643 1.469335 AAACGCCAGGAGAACCGAGA 61.469 55.000 0.00 0.00 41.83 4.04
1514 1644 1.004918 AAACGCCAGGAGAACCGAG 60.005 57.895 0.00 0.00 41.83 4.63
1515 1645 1.301401 CAAACGCCAGGAGAACCGA 60.301 57.895 0.00 0.00 41.83 4.69
1516 1646 1.597027 ACAAACGCCAGGAGAACCG 60.597 57.895 0.00 0.00 41.83 4.44
1517 1647 1.515521 CCACAAACGCCAGGAGAACC 61.516 60.000 0.00 0.00 0.00 3.62
1518 1648 0.818040 ACCACAAACGCCAGGAGAAC 60.818 55.000 0.00 0.00 0.00 3.01
1519 1649 0.106918 AACCACAAACGCCAGGAGAA 60.107 50.000 0.00 0.00 0.00 2.87
1520 1650 0.106918 AAACCACAAACGCCAGGAGA 60.107 50.000 0.00 0.00 0.00 3.71
1521 1651 0.030638 CAAACCACAAACGCCAGGAG 59.969 55.000 0.00 0.00 0.00 3.69
1522 1652 1.388065 CCAAACCACAAACGCCAGGA 61.388 55.000 0.00 0.00 0.00 3.86
1523 1653 1.067250 CCAAACCACAAACGCCAGG 59.933 57.895 0.00 0.00 0.00 4.45
1524 1654 1.067250 CCCAAACCACAAACGCCAG 59.933 57.895 0.00 0.00 0.00 4.85
1525 1655 1.379977 TCCCAAACCACAAACGCCA 60.380 52.632 0.00 0.00 0.00 5.69
1526 1656 1.104577 TCTCCCAAACCACAAACGCC 61.105 55.000 0.00 0.00 0.00 5.68
1527 1657 0.310854 CTCTCCCAAACCACAAACGC 59.689 55.000 0.00 0.00 0.00 4.84
1528 1658 0.310854 GCTCTCCCAAACCACAAACG 59.689 55.000 0.00 0.00 0.00 3.60
1529 1659 1.338020 CAGCTCTCCCAAACCACAAAC 59.662 52.381 0.00 0.00 0.00 2.93
1530 1660 1.691196 CAGCTCTCCCAAACCACAAA 58.309 50.000 0.00 0.00 0.00 2.83
1531 1661 0.178992 CCAGCTCTCCCAAACCACAA 60.179 55.000 0.00 0.00 0.00 3.33
1532 1662 1.352622 ACCAGCTCTCCCAAACCACA 61.353 55.000 0.00 0.00 0.00 4.17
1533 1663 0.178990 AACCAGCTCTCCCAAACCAC 60.179 55.000 0.00 0.00 0.00 4.16
1534 1664 0.178992 CAACCAGCTCTCCCAAACCA 60.179 55.000 0.00 0.00 0.00 3.67
1535 1665 0.895559 CCAACCAGCTCTCCCAAACC 60.896 60.000 0.00 0.00 0.00 3.27
1536 1666 0.178990 ACCAACCAGCTCTCCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
1541 1671 2.360475 GCCACCAACCAGCTCTCC 60.360 66.667 0.00 0.00 0.00 3.71
1580 1711 2.436646 ATCCGAGCCAGCAAACGG 60.437 61.111 13.76 13.76 45.61 4.44
1587 1718 0.731417 CAGCAAAAGATCCGAGCCAG 59.269 55.000 0.00 0.00 0.00 4.85
1701 1832 2.279650 AACGACGGTTCCACCACG 60.280 61.111 0.00 7.62 38.47 4.94
1749 1880 0.468648 GCCCCTGTATGTACTCCACC 59.531 60.000 0.00 0.00 0.00 4.61
1758 1889 2.189521 GACACCCGCCCCTGTATG 59.810 66.667 0.00 0.00 0.00 2.39
2091 2222 2.040009 AACCGGCCATGTAGATCCCG 62.040 60.000 0.00 2.44 38.71 5.14
2207 2338 4.922026 GGAACGTGCCCACCGTGT 62.922 66.667 0.00 0.00 38.77 4.49
2922 3286 5.353394 TTTGTAAGAAGTGGTCACAGAGT 57.647 39.130 3.82 0.00 0.00 3.24
2923 3287 6.708054 AGATTTTGTAAGAAGTGGTCACAGAG 59.292 38.462 3.82 0.00 0.00 3.35
2925 3289 6.867662 AGATTTTGTAAGAAGTGGTCACAG 57.132 37.500 3.82 0.00 0.00 3.66
2927 3291 8.443937 GTGATAGATTTTGTAAGAAGTGGTCAC 58.556 37.037 0.00 0.00 0.00 3.67
2928 3292 8.375506 AGTGATAGATTTTGTAAGAAGTGGTCA 58.624 33.333 0.00 0.00 0.00 4.02
2929 3293 8.779354 AGTGATAGATTTTGTAAGAAGTGGTC 57.221 34.615 0.00 0.00 0.00 4.02
2946 3339 6.378745 TGTTTATACCCCTGCTAGTGATAGA 58.621 40.000 0.00 0.00 0.00 1.98
3035 3432 2.146342 CGTCATCCTGCCATGTATTCC 58.854 52.381 0.00 0.00 0.00 3.01
3130 3529 1.722011 ATCCAACGAACCATGTCGAC 58.278 50.000 9.11 9.11 43.86 4.20
3137 3536 3.775202 CACACAAAAATCCAACGAACCA 58.225 40.909 0.00 0.00 0.00 3.67
3206 3605 5.591067 CCTCCTAACTCTCCACTAGTAGTTG 59.409 48.000 15.87 0.00 34.23 3.16
3208 3607 4.166531 CCCTCCTAACTCTCCACTAGTAGT 59.833 50.000 0.00 0.00 0.00 2.73
3209 3608 4.412858 TCCCTCCTAACTCTCCACTAGTAG 59.587 50.000 0.00 0.00 0.00 2.57
3210 3609 4.378047 TCCCTCCTAACTCTCCACTAGTA 58.622 47.826 0.00 0.00 0.00 1.82
3242 3641 0.033504 GGACGGCTCAAGTCAGACAA 59.966 55.000 2.66 0.00 40.20 3.18
3243 3642 1.666011 GGACGGCTCAAGTCAGACA 59.334 57.895 2.66 0.00 40.20 3.41
3286 3686 2.576615 GTCTAGCCCCAAAAGCTATGG 58.423 52.381 10.79 10.79 41.79 2.74
3287 3687 2.576615 GGTCTAGCCCCAAAAGCTATG 58.423 52.381 0.00 0.00 41.79 2.23
3288 3688 1.141053 CGGTCTAGCCCCAAAAGCTAT 59.859 52.381 0.00 0.00 41.79 2.97
3289 3689 0.539986 CGGTCTAGCCCCAAAAGCTA 59.460 55.000 0.00 0.00 41.83 3.32
3311 3711 0.771127 CCCCAACATCCATCCGGTAT 59.229 55.000 0.00 0.00 0.00 2.73
3312 3712 1.349542 CCCCCAACATCCATCCGGTA 61.350 60.000 0.00 0.00 0.00 4.02
3313 3713 2.689691 CCCCCAACATCCATCCGGT 61.690 63.158 0.00 0.00 0.00 5.28
3314 3714 1.719063 ATCCCCCAACATCCATCCGG 61.719 60.000 0.00 0.00 0.00 5.14
3315 3715 0.538057 CATCCCCCAACATCCATCCG 60.538 60.000 0.00 0.00 0.00 4.18
3316 3716 0.178953 CCATCCCCCAACATCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
3317 3717 0.557729 ACCATCCCCCAACATCCATC 59.442 55.000 0.00 0.00 0.00 3.51
3318 3718 1.018031 AACCATCCCCCAACATCCAT 58.982 50.000 0.00 0.00 0.00 3.41
3341 3749 4.567959 TGTGATATCGACAAGTTCAGCATG 59.432 41.667 0.00 0.00 37.54 4.06
3363 3771 3.771577 ACAAAGTAGAAGGGGTCACTG 57.228 47.619 0.00 0.00 0.00 3.66
3380 3788 1.269413 GGTGAGACCTTCGTCGAACAA 60.269 52.381 2.90 0.00 44.28 2.83
3404 3812 3.865745 GGTCAGAACAACTATCGGATGTG 59.134 47.826 0.00 0.00 31.27 3.21
3422 3830 3.306472 AAGTGTTTTAGCCCTTGGTCA 57.694 42.857 0.00 0.00 0.00 4.02
3453 3861 8.958119 TGTAAACAAAGTGTCTCTGTCTTAAT 57.042 30.769 0.00 0.00 0.00 1.40
3454 3862 8.958119 ATGTAAACAAAGTGTCTCTGTCTTAA 57.042 30.769 0.00 0.00 0.00 1.85
3456 3864 7.657761 CCTATGTAAACAAAGTGTCTCTGTCTT 59.342 37.037 0.00 0.00 0.00 3.01
3457 3865 7.155328 CCTATGTAAACAAAGTGTCTCTGTCT 58.845 38.462 0.00 0.00 0.00 3.41
3482 3890 3.403936 ACTGAACAGTGGCCTGAAC 57.596 52.632 3.32 0.00 41.50 3.18
3493 3901 4.591498 AGATGTAGGGTGTTACACTGAACA 59.409 41.667 15.44 15.35 36.45 3.18
3496 3904 6.014647 AGTAAGATGTAGGGTGTTACACTGA 58.985 40.000 15.44 0.00 36.45 3.41
3513 5575 6.438741 TCACTGGATGAAGAACAGAGTAAGAT 59.561 38.462 0.00 0.00 36.17 2.40
3516 5578 6.419484 TTCACTGGATGAAGAACAGAGTAA 57.581 37.500 0.00 0.00 42.62 2.24
3518 5580 4.963318 TTCACTGGATGAAGAACAGAGT 57.037 40.909 0.00 0.00 42.62 3.24
3567 5635 3.341823 TCCAGCATTCAGAGAGAAAAGC 58.658 45.455 0.00 0.00 40.22 3.51
3568 5636 4.201930 GCATCCAGCATTCAGAGAGAAAAG 60.202 45.833 0.00 0.00 44.79 2.27
3572 5640 2.616634 GCATCCAGCATTCAGAGAGA 57.383 50.000 0.00 0.00 44.79 3.10
3584 5652 2.957680 TGCTAGAAGAGAGAGCATCCAG 59.042 50.000 0.00 0.00 41.18 3.86
3588 5656 5.418676 GAAACTTGCTAGAAGAGAGAGCAT 58.581 41.667 1.04 0.00 45.20 3.79
3622 5690 2.240279 CCTTCTATCGGGATCGGACTT 58.760 52.381 0.00 0.00 36.95 3.01
3629 5697 2.659800 CGAGGCCTTCTATCGGGAT 58.340 57.895 6.77 0.00 32.93 3.85
3634 5702 1.660917 CGGACCGAGGCCTTCTATC 59.339 63.158 8.64 2.39 0.00 2.08
3636 5704 2.441532 CCGGACCGAGGCCTTCTA 60.442 66.667 17.49 0.00 0.00 2.10
3637 5705 3.899545 TTCCGGACCGAGGCCTTCT 62.900 63.158 17.49 0.00 0.00 2.85
3638 5706 3.387947 TTCCGGACCGAGGCCTTC 61.388 66.667 17.49 0.00 0.00 3.46
3639 5707 3.703127 GTTCCGGACCGAGGCCTT 61.703 66.667 17.49 0.00 0.00 4.35
3642 5710 4.493747 CTCGTTCCGGACCGAGGC 62.494 72.222 35.87 8.97 45.12 4.70
3645 5713 2.117156 GGATCTCGTTCCGGACCGA 61.117 63.158 23.35 23.35 0.00 4.69
3646 5714 2.061182 GAGGATCTCGTTCCGGACCG 62.061 65.000 16.20 16.20 40.94 4.79
3647 5715 1.734748 GAGGATCTCGTTCCGGACC 59.265 63.158 1.83 0.00 40.94 4.46
3672 5740 3.434641 GTCCCTCGGCAGTAGTTTTTAAC 59.565 47.826 0.00 0.00 0.00 2.01
3673 5741 3.667360 GTCCCTCGGCAGTAGTTTTTAA 58.333 45.455 0.00 0.00 0.00 1.52
3676 5861 0.037605 CGTCCCTCGGCAGTAGTTTT 60.038 55.000 0.00 0.00 35.71 2.43
3703 5888 6.102006 ACATGTTTAACGAACGGTGATATG 57.898 37.500 0.00 1.23 41.29 1.78
3704 5889 6.730960 AACATGTTTAACGAACGGTGATAT 57.269 33.333 4.92 0.00 41.29 1.63
3717 5910 4.022416 CACCTGCTGCCTTAACATGTTTAA 60.022 41.667 17.78 8.15 0.00 1.52
3724 5917 0.476338 TTCCACCTGCTGCCTTAACA 59.524 50.000 0.00 0.00 0.00 2.41
3726 5919 1.616159 GTTTCCACCTGCTGCCTTAA 58.384 50.000 0.00 0.00 0.00 1.85
3729 5922 2.116125 GGTTTCCACCTGCTGCCT 59.884 61.111 0.00 0.00 40.44 4.75
3731 5924 1.662044 CTTGGTTTCCACCTGCTGC 59.338 57.895 0.00 0.00 44.61 5.25
3735 5928 1.328279 GTTCCCTTGGTTTCCACCTG 58.672 55.000 0.00 0.00 44.61 4.00
3751 5944 2.687935 TCTTGTGGGTTGAGCTTTGTTC 59.312 45.455 0.00 0.00 0.00 3.18
3756 5949 2.373169 TCATCTCTTGTGGGTTGAGCTT 59.627 45.455 0.00 0.00 0.00 3.74
3765 5978 0.107312 CTGGGCCTCATCTCTTGTGG 60.107 60.000 4.53 0.00 41.14 4.17
3873 6086 1.135915 CTTCACTCGCAGTGGAGCTAT 59.864 52.381 13.87 0.00 44.19 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.