Multiple sequence alignment - TraesCS6D01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G263600 chr6D 100.000 3065 0 0 1 3065 372363489 372366553 0.000000e+00 5661.0
1 TraesCS6D01G263600 chr6D 89.189 259 28 0 2430 2688 454820415 454820673 1.060000e-84 324.0
2 TraesCS6D01G263600 chr6D 93.617 47 2 1 2945 2991 457637519 457637564 5.480000e-08 69.4
3 TraesCS6D01G263600 chr6D 97.436 39 1 0 2393 2431 8922292 8922330 1.970000e-07 67.6
4 TraesCS6D01G263600 chr6D 91.667 48 3 1 2945 2991 224749041 224749088 7.090000e-07 65.8
5 TraesCS6D01G263600 chr6A 91.559 1860 85 24 564 2363 514325826 514327673 0.000000e+00 2499.0
6 TraesCS6D01G263600 chr6A 88.950 543 42 9 32 562 514325129 514325665 0.000000e+00 654.0
7 TraesCS6D01G263600 chr6A 84.800 375 28 16 2720 3065 514327672 514328046 1.750000e-92 350.0
8 TraesCS6D01G263600 chr7D 88.722 266 29 1 2424 2688 459742866 459743131 1.060000e-84 324.0
9 TraesCS6D01G263600 chr7B 88.679 265 29 1 2430 2694 599251212 599250949 3.810000e-84 322.0
10 TraesCS6D01G263600 chr3A 88.679 265 29 1 2430 2694 23631543 23631280 3.810000e-84 322.0
11 TraesCS6D01G263600 chr3A 87.156 109 12 2 530 637 22437301 22437194 4.150000e-24 122.0
12 TraesCS6D01G263600 chr3A 87.619 105 11 2 530 633 65345763 65345866 1.490000e-23 121.0
13 TraesCS6D01G263600 chr3A 85.965 114 12 4 530 642 731510431 731510321 5.370000e-23 119.0
14 TraesCS6D01G263600 chr7A 88.476 269 25 5 2429 2694 561888245 561887980 1.370000e-83 320.0
15 TraesCS6D01G263600 chr7A 87.850 107 11 2 530 635 242621546 242621651 1.150000e-24 124.0
16 TraesCS6D01G263600 chr4A 88.593 263 29 1 2429 2691 410365098 410364837 4.930000e-83 318.0
17 TraesCS6D01G263600 chr4A 89.189 111 10 2 530 639 575976064 575976173 1.480000e-28 137.0
18 TraesCS6D01G263600 chr4A 85.965 114 13 3 530 642 122075079 122075190 5.370000e-23 119.0
19 TraesCS6D01G263600 chr1A 88.433 268 26 4 2427 2691 71050432 71050167 4.930000e-83 318.0
20 TraesCS6D01G263600 chr1A 90.278 72 5 2 2361 2431 286917104 286917174 3.250000e-15 93.5
21 TraesCS6D01G263600 chr5A 88.302 265 30 1 2430 2694 692261691 692261428 1.770000e-82 316.0
22 TraesCS6D01G263600 chr5A 100.000 32 0 0 2390 2421 342240527 342240558 3.300000e-05 60.2
23 TraesCS6D01G263600 chr1D 87.732 269 32 1 2426 2694 222025519 222025252 2.290000e-81 313.0
24 TraesCS6D01G263600 chr1D 97.368 38 0 1 2954 2991 365821370 365821334 2.550000e-06 63.9
25 TraesCS6D01G263600 chr2D 87.619 105 11 2 530 633 139026153 139026050 1.490000e-23 121.0
26 TraesCS6D01G263600 chr2A 85.841 113 13 3 530 640 735006854 735006743 1.930000e-22 117.0
27 TraesCS6D01G263600 chr3D 87.500 88 10 1 2344 2431 5400340 5400426 1.940000e-17 100.0
28 TraesCS6D01G263600 chr4B 96.226 53 2 0 3012 3064 654706179 654706127 1.510000e-13 87.9
29 TraesCS6D01G263600 chr5D 94.444 54 3 0 3012 3065 397198254 397198201 1.960000e-12 84.2
30 TraesCS6D01G263600 chr5D 81.818 88 13 3 2346 2431 351475760 351475674 1.520000e-08 71.3
31 TraesCS6D01G263600 chr5D 83.582 67 9 2 2388 2453 557217146 557217211 9.180000e-06 62.1
32 TraesCS6D01G263600 chr5D 100.000 28 0 0 2341 2368 51062879 51062906 6.000000e-03 52.8
33 TraesCS6D01G263600 chr5D 100.000 28 0 0 2340 2367 277815054 277815081 6.000000e-03 52.8
34 TraesCS6D01G263600 chr1B 90.741 54 5 0 3012 3065 525840065 525840012 4.240000e-09 73.1
35 TraesCS6D01G263600 chr1B 94.286 35 2 0 2400 2434 517502322 517502356 2.000000e-03 54.7
36 TraesCS6D01G263600 chr3B 91.837 49 4 0 2390 2438 147656996 147657044 5.480000e-08 69.4
37 TraesCS6D01G263600 chr3B 91.667 48 4 0 3012 3059 818760504 818760551 1.970000e-07 67.6
38 TraesCS6D01G263600 chr6B 91.304 46 4 0 2946 2991 633550859 633550904 2.550000e-06 63.9
39 TraesCS6D01G263600 chr6B 88.235 51 6 0 2941 2991 470122561 470122511 9.180000e-06 62.1
40 TraesCS6D01G263600 chr2B 89.362 47 5 0 2945 2991 377102429 377102475 3.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G263600 chr6D 372363489 372366553 3064 False 5661.000000 5661 100.000000 1 3065 1 chr6D.!!$F3 3064
1 TraesCS6D01G263600 chr6A 514325129 514328046 2917 False 1167.666667 2499 88.436333 32 3065 3 chr6A.!!$F1 3033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 478 0.546598 CATCCCAGGTACCAGGAACC 59.453 60.0 24.36 0.0 37.27 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2317 0.370273 GCATCGGACACGTCATCAAC 59.63 55.0 0.0 0.0 41.85 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.942850 TTATCAATCATTGTATATGTCCATCGT 57.057 29.630 0.00 0.00 0.00 3.73
36 37 4.485875 TGTATATGTCCATCGTAACCCCT 58.514 43.478 0.00 0.00 0.00 4.79
52 53 1.633774 CCCTGTATCTACCCATCGCT 58.366 55.000 0.00 0.00 0.00 4.93
55 56 2.365617 CCTGTATCTACCCATCGCTGTT 59.634 50.000 0.00 0.00 0.00 3.16
57 58 4.220821 CCTGTATCTACCCATCGCTGTTAT 59.779 45.833 0.00 0.00 0.00 1.89
93 94 1.620822 CCAAAAGCTGTTGGGCTACT 58.379 50.000 26.01 0.00 43.79 2.57
103 104 5.775195 AGCTGTTGGGCTACTCTTTAATTTT 59.225 36.000 0.00 0.00 41.16 1.82
108 109 6.645884 TGGGCTACTCTTTAATTTTAGGGA 57.354 37.500 0.00 0.00 0.00 4.20
112 113 6.542735 GGCTACTCTTTAATTTTAGGGACCAG 59.457 42.308 0.00 0.00 0.00 4.00
114 115 7.827729 GCTACTCTTTAATTTTAGGGACCAGAA 59.172 37.037 0.00 0.00 0.00 3.02
117 118 7.176865 ACTCTTTAATTTTAGGGACCAGAAAGC 59.823 37.037 0.00 0.00 0.00 3.51
118 119 7.007723 TCTTTAATTTTAGGGACCAGAAAGCA 58.992 34.615 0.00 0.00 0.00 3.91
119 120 7.507616 TCTTTAATTTTAGGGACCAGAAAGCAA 59.492 33.333 0.00 0.00 0.00 3.91
121 122 3.876309 TTTAGGGACCAGAAAGCAACT 57.124 42.857 0.00 0.00 0.00 3.16
122 123 3.876309 TTAGGGACCAGAAAGCAACTT 57.124 42.857 0.00 0.00 0.00 2.66
125 126 1.692411 GGACCAGAAAGCAACTTGGT 58.308 50.000 3.06 3.06 0.00 3.67
126 127 1.338020 GGACCAGAAAGCAACTTGGTG 59.662 52.381 7.57 0.00 0.00 4.17
128 129 2.687935 GACCAGAAAGCAACTTGGTGAA 59.312 45.455 7.57 0.00 0.00 3.18
152 156 1.066908 ACCGTTCATTGTGCAACTTGG 59.933 47.619 0.00 0.00 38.04 3.61
297 303 8.934023 AAATTATACACCAGTCCTCTCAAAAA 57.066 30.769 0.00 0.00 0.00 1.94
305 311 4.083802 CCAGTCCTCTCAAAAATTGACGTC 60.084 45.833 9.11 9.11 35.46 4.34
315 321 6.783162 TCAAAAATTGACGTCGTTTTCCTTA 58.217 32.000 23.23 11.89 34.08 2.69
325 331 3.071479 TCGTTTTCCTTATGCACTCACC 58.929 45.455 0.00 0.00 0.00 4.02
383 389 3.323115 TGGACCAGCTAGCATGAATCTAG 59.677 47.826 18.83 0.00 37.25 2.43
404 413 2.477375 GACGTACCAAGCACATTTCGAA 59.523 45.455 0.00 0.00 0.00 3.71
420 429 2.043992 TCGAACTGGGAAAGAGACCAA 58.956 47.619 0.00 0.00 36.09 3.67
422 431 2.505405 GAACTGGGAAAGAGACCAACC 58.495 52.381 0.00 0.00 36.09 3.77
439 448 4.006989 CCAACCGAACAAGGATATGTTGA 58.993 43.478 0.00 0.00 43.31 3.18
466 478 0.546598 CATCCCAGGTACCAGGAACC 59.453 60.000 24.36 0.00 37.27 3.62
468 480 1.229853 CCCAGGTACCAGGAACCCT 60.230 63.158 24.36 0.00 37.77 4.34
529 541 2.645838 TTCTGGCTTTCTGCAGAAGT 57.354 45.000 27.02 0.00 45.15 3.01
540 552 1.985116 GCAGAAGTCCCTCCGTCCT 60.985 63.158 0.00 0.00 0.00 3.85
546 558 2.544844 AGTCCCTCCGTCCTGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
547 559 2.108970 AGTCCCTCCGTCCTGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
553 566 3.179830 CTCCGTCCTGAATTACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
562 575 5.345741 CCTGAATTACTTGTCGCAAAAATGG 59.654 40.000 0.00 0.00 0.00 3.16
568 740 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
617 789 3.604875 TCACCTCCCGACAAGTAATTC 57.395 47.619 0.00 0.00 0.00 2.17
619 791 3.056107 TCACCTCCCGACAAGTAATTCAG 60.056 47.826 0.00 0.00 0.00 3.02
622 794 3.430929 CCTCCCGACAAGTAATTCAGGAG 60.431 52.174 0.00 0.00 39.50 3.69
623 795 2.500098 TCCCGACAAGTAATTCAGGAGG 59.500 50.000 0.00 0.00 0.00 4.30
629 801 2.173569 CAAGTAATTCAGGAGGGAGGGG 59.826 54.545 0.00 0.00 0.00 4.79
712 884 3.156714 TGGACGCACCAATGACCT 58.843 55.556 0.00 0.00 46.75 3.85
713 885 1.003839 TGGACGCACCAATGACCTC 60.004 57.895 0.00 0.00 46.75 3.85
714 886 1.003839 GGACGCACCAATGACCTCA 60.004 57.895 0.00 0.00 38.79 3.86
715 887 0.605319 GGACGCACCAATGACCTCAA 60.605 55.000 0.00 0.00 38.79 3.02
716 888 0.798776 GACGCACCAATGACCTCAAG 59.201 55.000 0.00 0.00 0.00 3.02
720 892 1.740025 GCACCAATGACCTCAAGCTAC 59.260 52.381 0.00 0.00 0.00 3.58
721 893 2.616510 GCACCAATGACCTCAAGCTACT 60.617 50.000 0.00 0.00 0.00 2.57
723 895 2.237392 ACCAATGACCTCAAGCTACTCC 59.763 50.000 0.00 0.00 0.00 3.85
725 897 3.529533 CAATGACCTCAAGCTACTCCAG 58.470 50.000 0.00 0.00 0.00 3.86
727 899 2.171840 TGACCTCAAGCTACTCCAGTC 58.828 52.381 0.00 0.00 0.00 3.51
729 901 1.203187 ACCTCAAGCTACTCCAGTCCA 60.203 52.381 0.00 0.00 0.00 4.02
737 909 1.751924 CTACTCCAGTCCACCACTAGC 59.248 57.143 0.00 0.00 32.21 3.42
740 912 1.556911 CTCCAGTCCACCACTAGCATT 59.443 52.381 0.00 0.00 32.21 3.56
837 1037 2.549198 CCATGCGCGCCAGATTCAT 61.549 57.895 30.77 10.70 0.00 2.57
951 1151 2.733956 ACTCCAAAAACCTGCAACTGA 58.266 42.857 0.00 0.00 0.00 3.41
969 1169 1.691434 TGATTTGGAAAACTGGTGGCC 59.309 47.619 0.00 0.00 0.00 5.36
1017 1217 1.478916 TCCATGCTTATTCCGACGTCA 59.521 47.619 17.16 0.00 0.00 4.35
1221 1424 1.226491 CTACAACGGGTACGGCGAG 60.226 63.158 16.62 1.47 46.48 5.03
1274 1477 2.202703 CGCTAGTACCACGTGGGC 60.203 66.667 36.47 27.25 42.05 5.36
1403 1606 1.761174 GTGAAGGGGTCAGGAAGCA 59.239 57.895 0.00 0.00 36.74 3.91
1412 1615 4.717629 CAGGAAGCACGTCGCCGA 62.718 66.667 0.00 0.00 44.04 5.54
1413 1616 4.421479 AGGAAGCACGTCGCCGAG 62.421 66.667 0.00 0.00 44.04 4.63
1452 1655 4.101448 GATGCCGGTGAGTGCCCT 62.101 66.667 1.90 0.00 0.00 5.19
1453 1656 3.628646 GATGCCGGTGAGTGCCCTT 62.629 63.158 1.90 0.00 0.00 3.95
1454 1657 3.925630 ATGCCGGTGAGTGCCCTTG 62.926 63.158 1.90 0.00 0.00 3.61
1513 1716 2.531206 CGTTCCAGATTCCTCTCGAAC 58.469 52.381 3.84 3.84 42.70 3.95
1570 1790 1.671850 GCAGATCGTCGTGGGAAAGAA 60.672 52.381 0.00 0.00 0.00 2.52
1572 1792 1.000145 GATCGTCGTGGGAAAGAAGC 59.000 55.000 0.00 0.00 0.00 3.86
1623 1843 2.094659 GGACGTGGTGATCACAGCG 61.095 63.158 27.90 27.90 46.36 5.18
1660 1880 1.200716 GGTACATCGTCGAGGTCAACA 59.799 52.381 16.77 0.00 0.00 3.33
1667 1887 3.554692 CGAGGTCAACATCGCCGC 61.555 66.667 4.17 0.00 43.10 6.53
1920 2152 4.424711 GGGTCGCCATGGGAAGCA 62.425 66.667 15.13 0.00 0.00 3.91
1922 2154 2.825836 GTCGCCATGGGAAGCAGG 60.826 66.667 15.13 0.00 0.00 4.85
2071 2303 1.069765 AGAGGGTTGTGACACGCTG 59.930 57.895 8.83 0.00 37.96 5.18
2103 2337 0.246360 TTGATGACGTGTCCGATGCT 59.754 50.000 0.00 0.00 37.88 3.79
2104 2338 1.099689 TGATGACGTGTCCGATGCTA 58.900 50.000 0.00 0.00 37.88 3.49
2173 2407 2.738321 GCCGGCTGTGGGAATTTATTTG 60.738 50.000 22.15 0.00 0.00 2.32
2179 2413 6.565623 CGGCTGTGGGAATTTATTTGTTTTTG 60.566 38.462 0.00 0.00 0.00 2.44
2209 2443 9.899226 GTATCTTATTATTTTCTTGTGGATGGC 57.101 33.333 0.00 0.00 0.00 4.40
2210 2444 8.773033 ATCTTATTATTTTCTTGTGGATGGCT 57.227 30.769 0.00 0.00 0.00 4.75
2212 2446 8.469200 TCTTATTATTTTCTTGTGGATGGCTTG 58.531 33.333 0.00 0.00 0.00 4.01
2228 2462 1.555533 GCTTGTAGGCTGTAGGGTTCT 59.444 52.381 0.00 0.00 0.00 3.01
2240 2474 1.303643 GGGTTCTTGCTGGTCAGGG 60.304 63.158 0.00 0.00 0.00 4.45
2278 2512 6.657541 TGTATGTTTTGGGAGGTTTATCTGAC 59.342 38.462 0.00 0.00 0.00 3.51
2320 2554 2.198827 AGGCACATGTTCCATCGAAA 57.801 45.000 17.16 0.00 0.00 3.46
2321 2555 2.726821 AGGCACATGTTCCATCGAAAT 58.273 42.857 17.16 0.00 0.00 2.17
2323 2557 3.511146 AGGCACATGTTCCATCGAAATTT 59.489 39.130 17.16 0.00 0.00 1.82
2324 2558 3.859386 GGCACATGTTCCATCGAAATTTC 59.141 43.478 9.89 8.20 0.00 2.17
2325 2559 4.380867 GGCACATGTTCCATCGAAATTTCT 60.381 41.667 15.92 0.00 0.00 2.52
2327 2561 5.392380 GCACATGTTCCATCGAAATTTCTCT 60.392 40.000 15.92 0.43 0.00 3.10
2328 2562 6.025896 CACATGTTCCATCGAAATTTCTCTG 58.974 40.000 15.92 11.97 0.00 3.35
2330 2564 6.430925 ACATGTTCCATCGAAATTTCTCTGAA 59.569 34.615 15.92 9.99 0.00 3.02
2331 2565 7.121759 ACATGTTCCATCGAAATTTCTCTGAAT 59.878 33.333 15.92 0.00 0.00 2.57
2334 2568 9.008965 TGTTCCATCGAAATTTCTCTGAATAAA 57.991 29.630 15.92 4.21 0.00 1.40
2360 2594 6.421485 TGTAAATACTACTCTCTCCGTTCCT 58.579 40.000 0.00 0.00 0.00 3.36
2361 2595 7.568349 TGTAAATACTACTCTCTCCGTTCCTA 58.432 38.462 0.00 0.00 0.00 2.94
2362 2596 8.049117 TGTAAATACTACTCTCTCCGTTCCTAA 58.951 37.037 0.00 0.00 0.00 2.69
2363 2597 7.951347 AAATACTACTCTCTCCGTTCCTAAA 57.049 36.000 0.00 0.00 0.00 1.85
2364 2598 8.536340 AAATACTACTCTCTCCGTTCCTAAAT 57.464 34.615 0.00 0.00 0.00 1.40
2365 2599 9.638176 AAATACTACTCTCTCCGTTCCTAAATA 57.362 33.333 0.00 0.00 0.00 1.40
2366 2600 9.810870 AATACTACTCTCTCCGTTCCTAAATAT 57.189 33.333 0.00 0.00 0.00 1.28
2368 2602 8.620116 ACTACTCTCTCCGTTCCTAAATATAC 57.380 38.462 0.00 0.00 0.00 1.47
2369 2603 6.557291 ACTCTCTCCGTTCCTAAATATACG 57.443 41.667 0.00 0.00 0.00 3.06
2370 2604 6.294473 ACTCTCTCCGTTCCTAAATATACGA 58.706 40.000 0.00 0.00 36.16 3.43
2371 2605 6.769822 ACTCTCTCCGTTCCTAAATATACGAA 59.230 38.462 0.00 0.00 36.16 3.85
2372 2606 7.284034 ACTCTCTCCGTTCCTAAATATACGAAA 59.716 37.037 0.00 0.00 36.16 3.46
2373 2607 7.646314 TCTCTCCGTTCCTAAATATACGAAAG 58.354 38.462 0.00 0.00 36.16 2.62
2374 2608 7.500227 TCTCTCCGTTCCTAAATATACGAAAGA 59.500 37.037 0.00 0.00 36.16 2.52
2375 2609 8.174733 TCTCCGTTCCTAAATATACGAAAGAT 57.825 34.615 0.00 0.00 36.16 2.40
2376 2610 8.636213 TCTCCGTTCCTAAATATACGAAAGATT 58.364 33.333 0.00 0.00 36.16 2.40
2377 2611 9.257651 CTCCGTTCCTAAATATACGAAAGATTT 57.742 33.333 0.00 0.00 36.16 2.17
2378 2612 9.037737 TCCGTTCCTAAATATACGAAAGATTTG 57.962 33.333 0.00 0.00 36.16 2.32
2379 2613 8.280497 CCGTTCCTAAATATACGAAAGATTTGG 58.720 37.037 0.00 0.00 36.16 3.28
2380 2614 8.823818 CGTTCCTAAATATACGAAAGATTTGGT 58.176 33.333 0.00 0.00 36.16 3.67
2423 2657 9.839817 TCAAAATGTCATATATTTAGGAACGGA 57.160 29.630 0.00 0.00 0.00 4.69
2425 2659 8.848474 AAATGTCATATATTTAGGAACGGAGG 57.152 34.615 0.00 0.00 0.00 4.30
2426 2660 7.792364 ATGTCATATATTTAGGAACGGAGGA 57.208 36.000 0.00 0.00 0.00 3.71
2427 2661 7.606135 TGTCATATATTTAGGAACGGAGGAA 57.394 36.000 0.00 0.00 0.00 3.36
2428 2662 7.667557 TGTCATATATTTAGGAACGGAGGAAG 58.332 38.462 0.00 0.00 0.00 3.46
2429 2663 7.289317 TGTCATATATTTAGGAACGGAGGAAGT 59.711 37.037 0.00 0.00 0.00 3.01
2430 2664 8.800332 GTCATATATTTAGGAACGGAGGAAGTA 58.200 37.037 0.00 0.00 0.00 2.24
2431 2665 8.800332 TCATATATTTAGGAACGGAGGAAGTAC 58.200 37.037 0.00 0.00 0.00 2.73
2432 2666 8.804204 CATATATTTAGGAACGGAGGAAGTACT 58.196 37.037 0.00 0.00 0.00 2.73
2433 2667 5.595257 ATTTAGGAACGGAGGAAGTACTC 57.405 43.478 0.00 0.00 36.76 2.59
2441 2675 2.535836 GAGGAAGTACTCCCTCTGGT 57.464 55.000 20.33 0.00 46.81 4.00
2442 2676 2.380941 GAGGAAGTACTCCCTCTGGTC 58.619 57.143 20.33 0.00 46.81 4.02
2443 2677 1.007359 AGGAAGTACTCCCTCTGGTCC 59.993 57.143 0.00 0.00 46.81 4.46
2444 2678 1.007359 GGAAGTACTCCCTCTGGTCCT 59.993 57.143 0.00 0.00 38.44 3.85
2445 2679 2.560158 GGAAGTACTCCCTCTGGTCCTT 60.560 54.545 0.00 0.00 38.44 3.36
2446 2680 3.174779 GAAGTACTCCCTCTGGTCCTTT 58.825 50.000 0.00 0.00 0.00 3.11
2447 2681 3.277416 AGTACTCCCTCTGGTCCTTTT 57.723 47.619 0.00 0.00 0.00 2.27
2448 2682 3.599348 AGTACTCCCTCTGGTCCTTTTT 58.401 45.455 0.00 0.00 0.00 1.94
2449 2683 4.759953 AGTACTCCCTCTGGTCCTTTTTA 58.240 43.478 0.00 0.00 0.00 1.52
2450 2684 4.531339 AGTACTCCCTCTGGTCCTTTTTAC 59.469 45.833 0.00 0.00 0.00 2.01
2451 2685 3.599348 ACTCCCTCTGGTCCTTTTTACT 58.401 45.455 0.00 0.00 0.00 2.24
2452 2686 3.583526 ACTCCCTCTGGTCCTTTTTACTC 59.416 47.826 0.00 0.00 0.00 2.59
2453 2687 3.841255 CTCCCTCTGGTCCTTTTTACTCT 59.159 47.826 0.00 0.00 0.00 3.24
2454 2688 3.583086 TCCCTCTGGTCCTTTTTACTCTG 59.417 47.826 0.00 0.00 0.00 3.35
2455 2689 3.339141 CCTCTGGTCCTTTTTACTCTGC 58.661 50.000 0.00 0.00 0.00 4.26
2456 2690 3.244561 CCTCTGGTCCTTTTTACTCTGCA 60.245 47.826 0.00 0.00 0.00 4.41
2457 2691 4.566488 CCTCTGGTCCTTTTTACTCTGCAT 60.566 45.833 0.00 0.00 0.00 3.96
2458 2692 5.338381 CCTCTGGTCCTTTTTACTCTGCATA 60.338 44.000 0.00 0.00 0.00 3.14
2459 2693 6.313519 TCTGGTCCTTTTTACTCTGCATAT 57.686 37.500 0.00 0.00 0.00 1.78
2460 2694 7.419057 CCTCTGGTCCTTTTTACTCTGCATATA 60.419 40.741 0.00 0.00 0.00 0.86
2461 2695 7.857456 TCTGGTCCTTTTTACTCTGCATATAA 58.143 34.615 0.00 0.00 0.00 0.98
2462 2696 7.987458 TCTGGTCCTTTTTACTCTGCATATAAG 59.013 37.037 0.00 0.00 0.00 1.73
2463 2697 7.857456 TGGTCCTTTTTACTCTGCATATAAGA 58.143 34.615 0.00 0.00 0.00 2.10
2464 2698 8.325787 TGGTCCTTTTTACTCTGCATATAAGAA 58.674 33.333 0.00 0.00 0.00 2.52
2465 2699 9.343539 GGTCCTTTTTACTCTGCATATAAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
2474 2708 8.659925 ACTCTGCATATAAGAATTGTCTGAAG 57.340 34.615 0.00 0.00 33.05 3.02
2475 2709 8.263640 ACTCTGCATATAAGAATTGTCTGAAGT 58.736 33.333 0.00 0.00 33.05 3.01
2476 2710 8.654230 TCTGCATATAAGAATTGTCTGAAGTC 57.346 34.615 0.00 0.00 33.05 3.01
2477 2711 8.260114 TCTGCATATAAGAATTGTCTGAAGTCA 58.740 33.333 0.00 0.00 33.05 3.41
2478 2712 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
2479 2713 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
2480 2714 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
2568 2802 5.940192 ATGAAACTTTAAGTCATGACGCA 57.060 34.783 19.85 9.13 36.20 5.24
2569 2803 5.940192 TGAAACTTTAAGTCATGACGCAT 57.060 34.783 19.85 12.70 36.20 4.73
2570 2804 5.927030 TGAAACTTTAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
2571 2805 5.700832 TGAAACTTTAAGTCATGACGCATCT 59.299 36.000 19.85 6.46 36.20 2.90
2572 2806 6.871492 TGAAACTTTAAGTCATGACGCATCTA 59.129 34.615 19.85 5.55 36.20 1.98
2573 2807 7.549134 TGAAACTTTAAGTCATGACGCATCTAT 59.451 33.333 19.85 4.91 36.20 1.98
2574 2808 7.849804 AACTTTAAGTCATGACGCATCTATT 57.150 32.000 19.85 9.50 36.20 1.73
2575 2809 7.239166 ACTTTAAGTCATGACGCATCTATTG 57.761 36.000 19.85 8.07 36.20 1.90
2576 2810 7.041721 ACTTTAAGTCATGACGCATCTATTGA 58.958 34.615 19.85 1.49 36.20 2.57
2577 2811 7.712639 ACTTTAAGTCATGACGCATCTATTGAT 59.287 33.333 19.85 0.00 36.20 2.57
2592 2826 8.956617 CATCTATTGATGCTGATTTCAGATTG 57.043 34.615 11.70 0.00 45.37 2.67
2593 2827 8.568794 CATCTATTGATGCTGATTTCAGATTGT 58.431 33.333 11.70 0.00 45.37 2.71
2594 2828 7.927048 TCTATTGATGCTGATTTCAGATTGTG 58.073 34.615 11.70 0.00 46.59 3.33
2595 2829 6.769134 ATTGATGCTGATTTCAGATTGTGA 57.231 33.333 11.70 0.00 46.59 3.58
2596 2830 6.578163 TTGATGCTGATTTCAGATTGTGAA 57.422 33.333 11.70 0.00 46.59 3.18
2597 2831 6.769134 TGATGCTGATTTCAGATTGTGAAT 57.231 33.333 11.70 0.00 44.89 2.57
2598 2832 6.560711 TGATGCTGATTTCAGATTGTGAATG 58.439 36.000 11.70 0.00 44.89 2.67
2599 2833 5.970317 TGCTGATTTCAGATTGTGAATGT 57.030 34.783 11.70 0.00 44.89 2.71
2600 2834 6.335471 TGCTGATTTCAGATTGTGAATGTT 57.665 33.333 11.70 0.00 44.89 2.71
2601 2835 7.451501 TGCTGATTTCAGATTGTGAATGTTA 57.548 32.000 11.70 0.00 44.89 2.41
2602 2836 7.532571 TGCTGATTTCAGATTGTGAATGTTAG 58.467 34.615 11.70 0.00 44.89 2.34
2603 2837 7.175467 TGCTGATTTCAGATTGTGAATGTTAGT 59.825 33.333 11.70 0.00 44.89 2.24
2604 2838 8.668353 GCTGATTTCAGATTGTGAATGTTAGTA 58.332 33.333 11.70 0.00 44.89 1.82
2645 2879 8.282124 GTTGATTAAACTTTACAAGGCTTGAC 57.718 34.615 32.50 11.65 35.75 3.18
2646 2880 7.817418 TGATTAAACTTTACAAGGCTTGACT 57.183 32.000 32.50 14.54 0.00 3.41
2647 2881 8.232913 TGATTAAACTTTACAAGGCTTGACTT 57.767 30.769 32.50 13.80 0.00 3.01
2648 2882 8.349983 TGATTAAACTTTACAAGGCTTGACTTC 58.650 33.333 32.50 13.61 0.00 3.01
2649 2883 4.813296 AACTTTACAAGGCTTGACTTCG 57.187 40.909 32.50 17.59 0.00 3.79
2650 2884 3.139077 ACTTTACAAGGCTTGACTTCGG 58.861 45.455 32.50 17.80 0.00 4.30
2651 2885 3.181458 ACTTTACAAGGCTTGACTTCGGA 60.181 43.478 32.50 10.30 0.00 4.55
2652 2886 2.450609 TACAAGGCTTGACTTCGGAC 57.549 50.000 32.50 0.00 0.00 4.79
2653 2887 0.468226 ACAAGGCTTGACTTCGGACA 59.532 50.000 32.50 0.00 0.00 4.02
2654 2888 1.134220 ACAAGGCTTGACTTCGGACAA 60.134 47.619 32.50 0.00 0.00 3.18
2655 2889 1.946768 CAAGGCTTGACTTCGGACAAA 59.053 47.619 22.64 0.00 0.00 2.83
2656 2890 2.554032 CAAGGCTTGACTTCGGACAAAT 59.446 45.455 22.64 0.00 0.00 2.32
2657 2891 2.427506 AGGCTTGACTTCGGACAAATC 58.572 47.619 0.00 0.00 0.00 2.17
2658 2892 2.039084 AGGCTTGACTTCGGACAAATCT 59.961 45.455 0.00 0.00 0.00 2.40
2659 2893 2.814336 GGCTTGACTTCGGACAAATCTT 59.186 45.455 0.00 0.00 0.00 2.40
2660 2894 4.000988 GGCTTGACTTCGGACAAATCTTA 58.999 43.478 0.00 0.00 0.00 2.10
2661 2895 4.636206 GGCTTGACTTCGGACAAATCTTAT 59.364 41.667 0.00 0.00 0.00 1.73
2662 2896 5.447818 GGCTTGACTTCGGACAAATCTTATG 60.448 44.000 0.00 0.00 0.00 1.90
2663 2897 5.122396 GCTTGACTTCGGACAAATCTTATGT 59.878 40.000 0.00 0.00 0.00 2.29
2664 2898 6.480524 TTGACTTCGGACAAATCTTATGTG 57.519 37.500 0.00 0.00 0.00 3.21
2665 2899 4.391830 TGACTTCGGACAAATCTTATGTGC 59.608 41.667 0.00 0.00 35.98 4.57
2666 2900 4.323417 ACTTCGGACAAATCTTATGTGCA 58.677 39.130 0.00 0.00 38.86 4.57
2667 2901 4.759693 ACTTCGGACAAATCTTATGTGCAA 59.240 37.500 0.00 0.00 38.86 4.08
2668 2902 5.240623 ACTTCGGACAAATCTTATGTGCAAA 59.759 36.000 0.00 0.00 38.86 3.68
2669 2903 5.041951 TCGGACAAATCTTATGTGCAAAC 57.958 39.130 0.00 0.00 38.86 2.93
2670 2904 4.759693 TCGGACAAATCTTATGTGCAAACT 59.240 37.500 0.00 0.00 38.86 2.66
2671 2905 5.935206 TCGGACAAATCTTATGTGCAAACTA 59.065 36.000 0.00 0.00 38.86 2.24
2672 2906 6.428465 TCGGACAAATCTTATGTGCAAACTAA 59.572 34.615 0.00 0.00 38.86 2.24
2673 2907 7.041030 TCGGACAAATCTTATGTGCAAACTAAA 60.041 33.333 0.00 0.00 38.86 1.85
2674 2908 7.593273 CGGACAAATCTTATGTGCAAACTAAAA 59.407 33.333 0.00 0.00 38.86 1.52
2675 2909 9.255304 GGACAAATCTTATGTGCAAACTAAAAA 57.745 29.630 0.00 0.00 38.78 1.94
2680 2914 9.476202 AATCTTATGTGCAAACTAAAAAGAACC 57.524 29.630 0.00 0.00 0.00 3.62
2681 2915 7.136119 TCTTATGTGCAAACTAAAAAGAACCG 58.864 34.615 0.00 0.00 0.00 4.44
2682 2916 4.035278 TGTGCAAACTAAAAAGAACCGG 57.965 40.909 0.00 0.00 0.00 5.28
2683 2917 3.695060 TGTGCAAACTAAAAAGAACCGGA 59.305 39.130 9.46 0.00 0.00 5.14
2684 2918 4.201970 TGTGCAAACTAAAAAGAACCGGAG 60.202 41.667 9.46 0.00 0.00 4.63
2702 2936 5.776173 CGGAGGGAATAGATTATATCGCT 57.224 43.478 0.00 0.00 37.73 4.93
2703 2937 6.879276 CGGAGGGAATAGATTATATCGCTA 57.121 41.667 0.00 0.00 35.52 4.26
2704 2938 6.904498 CGGAGGGAATAGATTATATCGCTAG 58.096 44.000 0.00 0.00 35.52 3.42
2705 2939 6.711194 CGGAGGGAATAGATTATATCGCTAGA 59.289 42.308 0.00 0.00 35.52 2.43
2706 2940 7.392113 CGGAGGGAATAGATTATATCGCTAGAT 59.608 40.741 0.00 0.00 40.76 1.98
2707 2941 8.519526 GGAGGGAATAGATTATATCGCTAGATG 58.480 40.741 0.00 0.00 37.70 2.90
2708 2942 7.891561 AGGGAATAGATTATATCGCTAGATGC 58.108 38.462 0.00 0.00 37.70 3.91
2709 2943 7.039363 AGGGAATAGATTATATCGCTAGATGCC 60.039 40.741 0.00 0.00 37.70 4.40
2710 2944 7.255977 GGGAATAGATTATATCGCTAGATGCCA 60.256 40.741 0.00 0.00 37.70 4.92
2711 2945 8.144478 GGAATAGATTATATCGCTAGATGCCAA 58.856 37.037 0.00 0.00 37.70 4.52
2712 2946 8.879342 AATAGATTATATCGCTAGATGCCAAC 57.121 34.615 0.00 0.00 37.70 3.77
2713 2947 6.286240 AGATTATATCGCTAGATGCCAACA 57.714 37.500 0.00 0.00 37.70 3.33
2714 2948 6.882656 AGATTATATCGCTAGATGCCAACAT 58.117 36.000 0.00 0.00 39.98 2.71
2715 2949 6.760298 AGATTATATCGCTAGATGCCAACATG 59.240 38.462 0.00 0.00 36.35 3.21
2716 2950 2.627515 ATCGCTAGATGCCAACATGT 57.372 45.000 0.00 0.00 36.35 3.21
2717 2951 1.655484 TCGCTAGATGCCAACATGTG 58.345 50.000 0.00 0.00 36.35 3.21
2718 2952 0.028505 CGCTAGATGCCAACATGTGC 59.971 55.000 0.00 0.00 36.35 4.57
2728 2962 2.128821 CCAACATGTGCAATGTGTGTG 58.871 47.619 13.05 9.04 31.80 3.82
2729 2963 2.223758 CCAACATGTGCAATGTGTGTGA 60.224 45.455 13.05 0.00 31.80 3.58
2761 2995 4.159135 AGTGGCAGGATGAATGAATTTGAC 59.841 41.667 0.00 0.00 39.69 3.18
2763 2997 3.703052 GGCAGGATGAATGAATTTGACCT 59.297 43.478 0.00 0.00 39.69 3.85
2765 2999 4.679662 CAGGATGAATGAATTTGACCTGC 58.320 43.478 0.00 0.00 39.69 4.85
2766 3000 4.158949 CAGGATGAATGAATTTGACCTGCA 59.841 41.667 0.00 0.00 39.69 4.41
2790 3032 7.523873 GCAAAATATATTGGTTCTTCTAGCCCC 60.524 40.741 0.00 0.00 0.00 5.80
2802 3044 3.398318 TCTAGCCCCTGTGTGAGATTA 57.602 47.619 0.00 0.00 0.00 1.75
2859 3101 2.094494 CACTCTCAGCGTACAACTGGAT 60.094 50.000 11.78 0.00 35.78 3.41
2860 3102 2.563179 ACTCTCAGCGTACAACTGGATT 59.437 45.455 11.78 2.38 35.78 3.01
2867 3110 6.040247 TCAGCGTACAACTGGATTATAACTG 58.960 40.000 11.78 0.00 35.78 3.16
2899 3142 2.665000 CCACTGGTCTGGTCGCAT 59.335 61.111 0.00 0.00 0.00 4.73
2908 3151 1.728971 GTCTGGTCGCATGAAACTGAG 59.271 52.381 0.00 0.00 0.00 3.35
2918 3161 5.045872 CGCATGAAACTGAGTGATATCTCA 58.954 41.667 3.98 0.00 41.40 3.27
2919 3162 5.521372 CGCATGAAACTGAGTGATATCTCAA 59.479 40.000 3.98 0.00 42.73 3.02
2921 3164 6.238320 GCATGAAACTGAGTGATATCTCAACC 60.238 42.308 3.98 0.00 42.73 3.77
2937 3180 0.323957 AACCGCAAGTTACTCCCTCC 59.676 55.000 0.00 0.00 36.74 4.30
2939 3182 1.810030 CGCAAGTTACTCCCTCCGC 60.810 63.158 0.00 0.00 0.00 5.54
2944 3187 3.867216 GCAAGTTACTCCCTCCGCTTTAA 60.867 47.826 0.00 0.00 0.00 1.52
2945 3188 4.514401 CAAGTTACTCCCTCCGCTTTAAT 58.486 43.478 0.00 0.00 0.00 1.40
2946 3189 4.138487 AGTTACTCCCTCCGCTTTAATG 57.862 45.455 0.00 0.00 0.00 1.90
2951 3203 7.234988 AGTTACTCCCTCCGCTTTAATGTATAT 59.765 37.037 0.00 0.00 0.00 0.86
2952 3204 6.435292 ACTCCCTCCGCTTTAATGTATATT 57.565 37.500 0.00 0.00 0.00 1.28
2985 3237 7.420184 AAAAAGTCAAACCTCACAAACTTTG 57.580 32.000 0.00 0.00 37.12 2.77
2986 3238 5.975693 AAGTCAAACCTCACAAACTTTGA 57.024 34.783 8.55 0.00 31.68 2.69
2987 3239 5.310720 AGTCAAACCTCACAAACTTTGAC 57.689 39.130 8.55 12.19 46.84 3.18
2988 3240 4.421058 GTCAAACCTCACAAACTTTGACC 58.579 43.478 8.55 0.00 43.35 4.02
2993 3256 5.675684 ACCTCACAAACTTTGACCAAAAT 57.324 34.783 8.55 0.00 0.00 1.82
3000 3263 9.658799 TCACAAACTTTGACCAAAATCATTTAA 57.341 25.926 8.55 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.942850 ACGATGGACATATACAATGATTGATAA 57.057 29.630 12.80 0.00 0.00 1.75
5 6 9.942850 TTACGATGGACATATACAATGATTGAT 57.057 29.630 12.80 4.03 0.00 2.57
6 7 9.203421 GTTACGATGGACATATACAATGATTGA 57.797 33.333 12.80 0.00 0.00 2.57
7 8 8.443160 GGTTACGATGGACATATACAATGATTG 58.557 37.037 3.16 3.16 0.00 2.67
8 9 7.606456 GGGTTACGATGGACATATACAATGATT 59.394 37.037 0.00 0.00 0.00 2.57
9 10 7.103641 GGGTTACGATGGACATATACAATGAT 58.896 38.462 0.00 0.00 0.00 2.45
10 11 6.460781 GGGTTACGATGGACATATACAATGA 58.539 40.000 0.00 0.00 0.00 2.57
11 12 5.642063 GGGGTTACGATGGACATATACAATG 59.358 44.000 0.00 0.00 0.00 2.82
12 13 5.546499 AGGGGTTACGATGGACATATACAAT 59.454 40.000 0.00 0.00 0.00 2.71
13 14 4.903049 AGGGGTTACGATGGACATATACAA 59.097 41.667 0.00 0.00 0.00 2.41
14 15 4.282449 CAGGGGTTACGATGGACATATACA 59.718 45.833 0.00 0.00 0.00 2.29
15 16 4.282703 ACAGGGGTTACGATGGACATATAC 59.717 45.833 0.00 0.00 0.00 1.47
16 17 4.485875 ACAGGGGTTACGATGGACATATA 58.514 43.478 0.00 0.00 0.00 0.86
17 18 3.314693 ACAGGGGTTACGATGGACATAT 58.685 45.455 0.00 0.00 0.00 1.78
18 19 2.754465 ACAGGGGTTACGATGGACATA 58.246 47.619 0.00 0.00 0.00 2.29
19 20 1.580059 ACAGGGGTTACGATGGACAT 58.420 50.000 0.00 0.00 0.00 3.06
20 21 2.234896 TACAGGGGTTACGATGGACA 57.765 50.000 0.00 0.00 0.00 4.02
21 22 2.963782 AGATACAGGGGTTACGATGGAC 59.036 50.000 0.00 0.00 0.00 4.02
22 23 3.323774 AGATACAGGGGTTACGATGGA 57.676 47.619 0.00 0.00 0.00 3.41
23 24 3.257624 GGTAGATACAGGGGTTACGATGG 59.742 52.174 0.00 0.00 0.00 3.51
24 25 3.257624 GGGTAGATACAGGGGTTACGATG 59.742 52.174 0.00 0.00 0.00 3.84
25 26 3.117016 TGGGTAGATACAGGGGTTACGAT 60.117 47.826 0.00 0.00 0.00 3.73
26 27 2.244510 TGGGTAGATACAGGGGTTACGA 59.755 50.000 0.00 0.00 0.00 3.43
27 28 2.669781 TGGGTAGATACAGGGGTTACG 58.330 52.381 0.00 0.00 0.00 3.18
28 29 3.257624 CGATGGGTAGATACAGGGGTTAC 59.742 52.174 0.00 0.00 0.00 2.50
29 30 3.503365 CGATGGGTAGATACAGGGGTTA 58.497 50.000 0.00 0.00 0.00 2.85
30 31 2.326428 CGATGGGTAGATACAGGGGTT 58.674 52.381 0.00 0.00 0.00 4.11
36 37 5.538118 CAATAACAGCGATGGGTAGATACA 58.462 41.667 5.32 0.00 0.00 2.29
52 53 1.899142 GAAGGCAAAGGGGCAATAACA 59.101 47.619 0.00 0.00 46.44 2.41
55 56 1.555967 GTGAAGGCAAAGGGGCAATA 58.444 50.000 0.00 0.00 46.44 1.90
57 58 1.836604 GGTGAAGGCAAAGGGGCAA 60.837 57.895 0.00 0.00 46.44 4.52
89 90 9.734984 TTTCTGGTCCCTAAAATTAAAGAGTAG 57.265 33.333 0.00 0.00 0.00 2.57
93 94 7.007723 TGCTTTCTGGTCCCTAAAATTAAAGA 58.992 34.615 0.00 0.00 0.00 2.52
103 104 2.224769 CCAAGTTGCTTTCTGGTCCCTA 60.225 50.000 0.00 0.00 0.00 3.53
108 109 2.435372 TCACCAAGTTGCTTTCTGGT 57.565 45.000 0.00 0.00 0.00 4.00
112 113 2.860136 GTTGCTTCACCAAGTTGCTTTC 59.140 45.455 0.00 0.00 31.45 2.62
114 115 1.136891 GGTTGCTTCACCAAGTTGCTT 59.863 47.619 0.00 0.00 36.73 3.91
117 118 0.738389 ACGGTTGCTTCACCAAGTTG 59.262 50.000 0.00 0.00 36.49 3.16
118 119 1.404035 GAACGGTTGCTTCACCAAGTT 59.596 47.619 0.00 0.00 36.49 2.66
119 120 1.021968 GAACGGTTGCTTCACCAAGT 58.978 50.000 0.00 0.00 36.49 3.16
121 122 1.686355 ATGAACGGTTGCTTCACCAA 58.314 45.000 0.00 0.00 36.49 3.67
122 123 1.336440 CAATGAACGGTTGCTTCACCA 59.664 47.619 0.00 0.00 36.49 4.17
125 126 1.268999 GCACAATGAACGGTTGCTTCA 60.269 47.619 0.00 0.00 32.24 3.02
126 127 1.268999 TGCACAATGAACGGTTGCTTC 60.269 47.619 0.00 0.00 0.00 3.86
128 129 0.743688 TTGCACAATGAACGGTTGCT 59.256 45.000 0.00 0.00 0.00 3.91
235 241 7.698163 AGGATTGTCTAATTAGGGTTGATCT 57.302 36.000 12.54 1.05 0.00 2.75
271 277 8.934023 TTTTGAGAGGACTGGTGTATAATTTT 57.066 30.769 0.00 0.00 0.00 1.82
277 283 6.431234 GTCAATTTTTGAGAGGACTGGTGTAT 59.569 38.462 0.00 0.00 41.01 2.29
278 284 5.763204 GTCAATTTTTGAGAGGACTGGTGTA 59.237 40.000 0.00 0.00 41.01 2.90
290 296 5.270853 AGGAAAACGACGTCAATTTTTGAG 58.729 37.500 21.79 4.76 41.01 3.02
292 298 5.942325 AAGGAAAACGACGTCAATTTTTG 57.058 34.783 21.79 6.02 0.00 2.44
293 299 6.143278 GCATAAGGAAAACGACGTCAATTTTT 59.857 34.615 21.79 18.76 0.00 1.94
297 303 3.749088 TGCATAAGGAAAACGACGTCAAT 59.251 39.130 17.16 0.00 0.00 2.57
305 311 2.159707 CGGTGAGTGCATAAGGAAAACG 60.160 50.000 0.00 0.00 0.00 3.60
315 321 4.002506 TGTCGCCGGTGAGTGCAT 62.003 61.111 20.25 0.00 0.00 3.96
383 389 2.063266 TCGAAATGTGCTTGGTACGTC 58.937 47.619 0.00 0.00 0.00 4.34
404 413 0.396811 CGGTTGGTCTCTTTCCCAGT 59.603 55.000 0.00 0.00 31.04 4.00
420 429 6.235231 AGTATCAACATATCCTTGTTCGGT 57.765 37.500 0.00 0.00 37.73 4.69
422 431 6.907212 GCAAAGTATCAACATATCCTTGTTCG 59.093 38.462 0.00 0.00 37.73 3.95
439 448 2.849943 TGGTACCTGGGATGCAAAGTAT 59.150 45.455 14.36 0.00 0.00 2.12
498 510 6.257630 GCAGAAAGCCAGAAAAACAATGTAAA 59.742 34.615 0.00 0.00 37.23 2.01
499 511 5.752955 GCAGAAAGCCAGAAAAACAATGTAA 59.247 36.000 0.00 0.00 37.23 2.41
501 513 4.122046 GCAGAAAGCCAGAAAAACAATGT 58.878 39.130 0.00 0.00 37.23 2.71
502 514 4.121317 TGCAGAAAGCCAGAAAAACAATG 58.879 39.130 0.00 0.00 44.83 2.82
503 515 4.099881 TCTGCAGAAAGCCAGAAAAACAAT 59.900 37.500 15.67 0.00 44.83 2.71
504 516 3.446873 TCTGCAGAAAGCCAGAAAAACAA 59.553 39.130 15.67 0.00 44.83 2.83
505 517 3.023119 TCTGCAGAAAGCCAGAAAAACA 58.977 40.909 15.67 0.00 44.83 2.83
506 518 3.715628 TCTGCAGAAAGCCAGAAAAAC 57.284 42.857 15.67 0.00 44.83 2.43
507 519 3.701040 ACTTCTGCAGAAAGCCAGAAAAA 59.299 39.130 28.16 3.43 44.83 1.94
513 525 0.250901 GGGACTTCTGCAGAAAGCCA 60.251 55.000 32.02 14.84 44.83 4.75
521 533 2.283529 GGACGGAGGGACTTCTGCA 61.284 63.158 0.00 0.00 41.55 4.41
529 541 2.500098 CAAGTAATTCAGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
540 552 6.078202 TCCATTTTTGCGACAAGTAATTCA 57.922 33.333 0.00 0.00 0.00 2.57
546 558 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
547 559 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
582 754 7.008332 TCGGGAGGTGAATGTATCTAGAATTA 58.992 38.462 0.00 0.00 0.00 1.40
583 755 5.839063 TCGGGAGGTGAATGTATCTAGAATT 59.161 40.000 0.00 0.00 0.00 2.17
584 756 5.244178 GTCGGGAGGTGAATGTATCTAGAAT 59.756 44.000 0.00 0.00 0.00 2.40
586 758 4.142790 GTCGGGAGGTGAATGTATCTAGA 58.857 47.826 0.00 0.00 0.00 2.43
587 759 3.889538 TGTCGGGAGGTGAATGTATCTAG 59.110 47.826 0.00 0.00 0.00 2.43
588 760 3.905968 TGTCGGGAGGTGAATGTATCTA 58.094 45.455 0.00 0.00 0.00 1.98
589 761 2.747177 TGTCGGGAGGTGAATGTATCT 58.253 47.619 0.00 0.00 0.00 1.98
590 762 3.118738 ACTTGTCGGGAGGTGAATGTATC 60.119 47.826 0.00 0.00 0.00 2.24
591 763 2.838202 ACTTGTCGGGAGGTGAATGTAT 59.162 45.455 0.00 0.00 0.00 2.29
592 764 2.253610 ACTTGTCGGGAGGTGAATGTA 58.746 47.619 0.00 0.00 0.00 2.29
593 765 1.056660 ACTTGTCGGGAGGTGAATGT 58.943 50.000 0.00 0.00 0.00 2.71
594 766 3.328382 TTACTTGTCGGGAGGTGAATG 57.672 47.619 0.00 0.00 0.00 2.67
595 767 4.019681 TGAATTACTTGTCGGGAGGTGAAT 60.020 41.667 0.00 0.00 0.00 2.57
596 768 3.325425 TGAATTACTTGTCGGGAGGTGAA 59.675 43.478 0.00 0.00 0.00 3.18
598 770 3.262420 CTGAATTACTTGTCGGGAGGTG 58.738 50.000 0.00 0.00 0.00 4.00
599 771 2.236395 CCTGAATTACTTGTCGGGAGGT 59.764 50.000 0.00 0.00 42.12 3.85
600 772 2.500098 TCCTGAATTACTTGTCGGGAGG 59.500 50.000 0.00 0.00 43.10 4.30
601 773 3.887621 TCCTGAATTACTTGTCGGGAG 57.112 47.619 0.00 0.00 43.10 4.30
603 775 2.420129 CCCTCCTGAATTACTTGTCGGG 60.420 54.545 0.00 0.00 41.07 5.14
604 776 2.500098 TCCCTCCTGAATTACTTGTCGG 59.500 50.000 0.00 0.00 0.00 4.79
617 789 1.273896 GGATATACCCCCTCCCTCCTG 60.274 61.905 0.00 0.00 0.00 3.86
619 791 1.102938 AGGATATACCCCCTCCCTCC 58.897 60.000 0.00 0.00 40.05 4.30
622 794 2.735259 TTCAGGATATACCCCCTCCC 57.265 55.000 0.00 0.00 40.05 4.30
623 795 5.367060 GTGATATTCAGGATATACCCCCTCC 59.633 48.000 0.00 0.00 40.05 4.30
629 801 7.726033 ACTGGAGTGATATTCAGGATATACC 57.274 40.000 0.00 0.00 39.35 2.73
709 881 1.203187 TGGACTGGAGTAGCTTGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
710 882 1.205893 GTGGACTGGAGTAGCTTGAGG 59.794 57.143 0.00 0.00 0.00 3.86
711 883 1.205893 GGTGGACTGGAGTAGCTTGAG 59.794 57.143 0.00 0.00 0.00 3.02
712 884 1.267121 GGTGGACTGGAGTAGCTTGA 58.733 55.000 0.00 0.00 0.00 3.02
713 885 0.976641 TGGTGGACTGGAGTAGCTTG 59.023 55.000 0.00 0.00 0.00 4.01
714 886 0.977395 GTGGTGGACTGGAGTAGCTT 59.023 55.000 0.00 0.00 0.00 3.74
715 887 0.115349 AGTGGTGGACTGGAGTAGCT 59.885 55.000 0.00 0.00 31.75 3.32
716 888 1.751924 CTAGTGGTGGACTGGAGTAGC 59.248 57.143 0.00 0.00 35.13 3.58
720 892 1.198713 ATGCTAGTGGTGGACTGGAG 58.801 55.000 0.00 0.00 35.13 3.86
721 893 1.555075 GAATGCTAGTGGTGGACTGGA 59.445 52.381 0.00 0.00 35.13 3.86
723 895 1.556911 AGGAATGCTAGTGGTGGACTG 59.443 52.381 0.00 0.00 35.96 3.51
725 897 2.789409 AAGGAATGCTAGTGGTGGAC 57.211 50.000 0.00 0.00 0.00 4.02
727 899 3.191371 GTGAAAAGGAATGCTAGTGGTGG 59.809 47.826 0.00 0.00 0.00 4.61
729 901 4.074970 CAGTGAAAAGGAATGCTAGTGGT 58.925 43.478 0.00 0.00 0.00 4.16
737 909 4.279169 TGGAAGCTTCAGTGAAAAGGAATG 59.721 41.667 27.02 0.00 0.00 2.67
740 912 3.576078 TGGAAGCTTCAGTGAAAAGGA 57.424 42.857 27.02 0.00 0.00 3.36
837 1037 0.736053 GTTTGCACGTCCAGGTTCAA 59.264 50.000 0.00 0.00 0.00 2.69
870 1070 1.255882 TTCGGGTAGGTGCGTCTAAA 58.744 50.000 0.00 0.00 0.00 1.85
919 1119 4.092968 GGTTTTTGGAGTAGCGTGTATCTG 59.907 45.833 0.00 0.00 0.00 2.90
920 1120 4.020485 AGGTTTTTGGAGTAGCGTGTATCT 60.020 41.667 0.00 0.00 0.00 1.98
951 1151 1.799933 TGGCCACCAGTTTTCCAAAT 58.200 45.000 0.00 0.00 0.00 2.32
993 1193 3.181465 ACGTCGGAATAAGCATGGAGATT 60.181 43.478 0.00 0.00 0.00 2.40
1056 1256 0.038892 TGGCCTTCTTGTACGACGTC 60.039 55.000 2.43 5.18 0.00 4.34
1059 1259 1.012486 CCGTGGCCTTCTTGTACGAC 61.012 60.000 10.77 0.00 36.94 4.34
1391 1594 2.432628 CGACGTGCTTCCTGACCC 60.433 66.667 0.00 0.00 0.00 4.46
1425 1628 2.202932 CCGGCATCGAACCCTCTG 60.203 66.667 0.00 0.00 39.00 3.35
1452 1655 4.655963 AGAAGTATCTCAAAGCAAGGCAA 58.344 39.130 0.00 0.00 0.00 4.52
1453 1656 4.292186 AGAAGTATCTCAAAGCAAGGCA 57.708 40.909 0.00 0.00 0.00 4.75
1513 1716 6.912051 TCGACAACAAAAATGTCAATCTTCTG 59.088 34.615 7.36 0.00 45.90 3.02
1633 1853 1.650536 CGACGATGTACCGAGACGC 60.651 63.158 0.00 0.00 0.00 5.19
1638 1858 0.391528 TGACCTCGACGATGTACCGA 60.392 55.000 5.73 0.00 0.00 4.69
1660 1880 4.554363 CTCGAACTCGGCGGCGAT 62.554 66.667 34.71 21.49 40.29 4.58
1667 1887 3.720106 CTCGCCGTCTCGAACTCGG 62.720 68.421 15.18 15.18 45.94 4.63
2038 2270 1.817099 CTCTGAACATCAGCCGCCC 60.817 63.158 2.48 0.00 43.95 6.13
2042 2274 1.271597 ACAACCCTCTGAACATCAGCC 60.272 52.381 2.48 0.00 43.95 4.85
2071 2303 1.872234 CATCAACGCATGCAGCAGC 60.872 57.895 19.57 3.97 46.13 5.25
2083 2317 0.370273 GCATCGGACACGTCATCAAC 59.630 55.000 0.00 0.00 41.85 3.18
2103 2337 3.678548 CAGTCGTCTCATCCGATCGTATA 59.321 47.826 15.09 0.00 36.62 1.47
2104 2338 2.480802 CAGTCGTCTCATCCGATCGTAT 59.519 50.000 15.09 0.00 36.62 3.06
2155 2389 6.262049 ACAAAAACAAATAAATTCCCACAGCC 59.738 34.615 0.00 0.00 0.00 4.85
2193 2427 4.463891 CCTACAAGCCATCCACAAGAAAAT 59.536 41.667 0.00 0.00 0.00 1.82
2194 2428 3.826157 CCTACAAGCCATCCACAAGAAAA 59.174 43.478 0.00 0.00 0.00 2.29
2195 2429 3.420893 CCTACAAGCCATCCACAAGAAA 58.579 45.455 0.00 0.00 0.00 2.52
2209 2443 3.600388 CAAGAACCCTACAGCCTACAAG 58.400 50.000 0.00 0.00 0.00 3.16
2210 2444 2.290071 GCAAGAACCCTACAGCCTACAA 60.290 50.000 0.00 0.00 0.00 2.41
2212 2446 1.555533 AGCAAGAACCCTACAGCCTAC 59.444 52.381 0.00 0.00 0.00 3.18
2228 2462 2.203480 GCAACCCCTGACCAGCAA 60.203 61.111 0.00 0.00 0.00 3.91
2240 2474 1.519408 ACATACACTTCCACGCAACC 58.481 50.000 0.00 0.00 0.00 3.77
2334 2568 7.560626 AGGAACGGAGAGAGTAGTATTTACATT 59.439 37.037 0.00 0.00 0.00 2.71
2349 2583 7.646314 TCTTTCGTATATTTAGGAACGGAGAG 58.354 38.462 0.00 0.00 33.25 3.20
2350 2584 7.572523 TCTTTCGTATATTTAGGAACGGAGA 57.427 36.000 0.00 0.00 33.25 3.71
2397 2631 9.839817 TCCGTTCCTAAATATATGACATTTTGA 57.160 29.630 0.00 0.00 0.00 2.69
2399 2633 9.284968 CCTCCGTTCCTAAATATATGACATTTT 57.715 33.333 0.00 0.00 0.00 1.82
2400 2634 8.656806 TCCTCCGTTCCTAAATATATGACATTT 58.343 33.333 0.00 0.00 0.00 2.32
2401 2635 8.202461 TCCTCCGTTCCTAAATATATGACATT 57.798 34.615 0.00 0.00 0.00 2.71
2402 2636 7.792364 TCCTCCGTTCCTAAATATATGACAT 57.208 36.000 0.00 0.00 0.00 3.06
2403 2637 7.289317 ACTTCCTCCGTTCCTAAATATATGACA 59.711 37.037 0.00 0.00 0.00 3.58
2404 2638 7.668492 ACTTCCTCCGTTCCTAAATATATGAC 58.332 38.462 0.00 0.00 0.00 3.06
2405 2639 7.850935 ACTTCCTCCGTTCCTAAATATATGA 57.149 36.000 0.00 0.00 0.00 2.15
2406 2640 8.804204 AGTACTTCCTCCGTTCCTAAATATATG 58.196 37.037 0.00 0.00 0.00 1.78
2407 2641 8.953223 AGTACTTCCTCCGTTCCTAAATATAT 57.047 34.615 0.00 0.00 0.00 0.86
2408 2642 7.449704 GGAGTACTTCCTCCGTTCCTAAATATA 59.550 40.741 0.00 0.00 41.58 0.86
2409 2643 6.267242 GGAGTACTTCCTCCGTTCCTAAATAT 59.733 42.308 0.00 0.00 41.58 1.28
2410 2644 5.595952 GGAGTACTTCCTCCGTTCCTAAATA 59.404 44.000 0.00 0.00 41.58 1.40
2411 2645 4.405036 GGAGTACTTCCTCCGTTCCTAAAT 59.595 45.833 0.00 0.00 41.58 1.40
2412 2646 3.766051 GGAGTACTTCCTCCGTTCCTAAA 59.234 47.826 0.00 0.00 41.58 1.85
2413 2647 3.359950 GGAGTACTTCCTCCGTTCCTAA 58.640 50.000 0.00 0.00 41.58 2.69
2414 2648 3.010200 GGAGTACTTCCTCCGTTCCTA 57.990 52.381 0.00 0.00 41.58 2.94
2415 2649 1.849977 GGAGTACTTCCTCCGTTCCT 58.150 55.000 0.00 0.00 41.58 3.36
2423 2657 1.007359 GGACCAGAGGGAGTACTTCCT 59.993 57.143 23.71 23.71 45.98 3.36
2424 2658 1.007359 AGGACCAGAGGGAGTACTTCC 59.993 57.143 12.91 12.91 46.00 3.46
2425 2659 2.535836 AGGACCAGAGGGAGTACTTC 57.464 55.000 0.00 0.00 38.05 3.01
2426 2660 3.277416 AAAGGACCAGAGGGAGTACTT 57.723 47.619 0.00 0.00 38.05 2.24
2427 2661 3.277416 AAAAGGACCAGAGGGAGTACT 57.723 47.619 0.00 0.00 38.05 2.73
2428 2662 4.531339 AGTAAAAAGGACCAGAGGGAGTAC 59.469 45.833 0.00 0.00 38.05 2.73
2429 2663 4.759953 AGTAAAAAGGACCAGAGGGAGTA 58.240 43.478 0.00 0.00 38.05 2.59
2430 2664 3.583526 GAGTAAAAAGGACCAGAGGGAGT 59.416 47.826 0.00 0.00 38.05 3.85
2431 2665 3.841255 AGAGTAAAAAGGACCAGAGGGAG 59.159 47.826 0.00 0.00 38.05 4.30
2432 2666 3.583086 CAGAGTAAAAAGGACCAGAGGGA 59.417 47.826 0.00 0.00 38.05 4.20
2433 2667 3.870299 GCAGAGTAAAAAGGACCAGAGGG 60.870 52.174 0.00 0.00 41.29 4.30
2434 2668 3.244561 TGCAGAGTAAAAAGGACCAGAGG 60.245 47.826 0.00 0.00 0.00 3.69
2435 2669 4.008074 TGCAGAGTAAAAAGGACCAGAG 57.992 45.455 0.00 0.00 0.00 3.35
2436 2670 4.640771 ATGCAGAGTAAAAAGGACCAGA 57.359 40.909 0.00 0.00 0.00 3.86
2437 2671 7.987458 TCTTATATGCAGAGTAAAAAGGACCAG 59.013 37.037 0.00 0.00 0.00 4.00
2438 2672 7.857456 TCTTATATGCAGAGTAAAAAGGACCA 58.143 34.615 0.00 0.00 0.00 4.02
2439 2673 8.732746 TTCTTATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
2448 2682 9.755804 CTTCAGACAATTCTTATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
2449 2683 8.263640 ACTTCAGACAATTCTTATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
2450 2684 8.659925 ACTTCAGACAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
2451 2685 8.260114 TGACTTCAGACAATTCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
2452 2686 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
2453 2687 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2454 2688 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
2542 2776 9.157104 TGCGTCATGACTTAAAGTTTCATATTA 57.843 29.630 22.95 0.00 0.00 0.98
2543 2777 8.039603 TGCGTCATGACTTAAAGTTTCATATT 57.960 30.769 22.95 0.00 0.00 1.28
2544 2778 7.609760 TGCGTCATGACTTAAAGTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
2545 2779 7.549134 AGATGCGTCATGACTTAAAGTTTCATA 59.451 33.333 22.95 0.00 0.00 2.15
2546 2780 5.940192 TGCGTCATGACTTAAAGTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
2547 2781 5.700832 AGATGCGTCATGACTTAAAGTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
2548 2782 6.170675 AGATGCGTCATGACTTAAAGTTTC 57.829 37.500 22.95 8.71 0.00 2.78
2549 2783 7.849804 ATAGATGCGTCATGACTTAAAGTTT 57.150 32.000 22.95 4.61 0.00 2.66
2550 2784 7.549134 TCAATAGATGCGTCATGACTTAAAGTT 59.451 33.333 22.95 7.60 0.00 2.66
2551 2785 7.041721 TCAATAGATGCGTCATGACTTAAAGT 58.958 34.615 22.95 6.51 0.00 2.66
2552 2786 7.468922 TCAATAGATGCGTCATGACTTAAAG 57.531 36.000 22.95 8.65 0.00 1.85
2553 2787 7.854534 CATCAATAGATGCGTCATGACTTAAA 58.145 34.615 22.95 6.68 44.61 1.52
2554 2788 7.412137 CATCAATAGATGCGTCATGACTTAA 57.588 36.000 22.95 9.11 44.61 1.85
2556 2790 5.919272 CATCAATAGATGCGTCATGACTT 57.081 39.130 22.95 8.27 44.61 3.01
2568 2802 8.568794 CACAATCTGAAATCAGCATCAATAGAT 58.431 33.333 5.53 0.00 43.46 1.98
2569 2803 7.771826 TCACAATCTGAAATCAGCATCAATAGA 59.228 33.333 5.53 0.00 43.46 1.98
2570 2804 7.927048 TCACAATCTGAAATCAGCATCAATAG 58.073 34.615 5.53 0.00 43.46 1.73
2571 2805 7.868906 TCACAATCTGAAATCAGCATCAATA 57.131 32.000 5.53 0.00 43.46 1.90
2572 2806 6.769134 TCACAATCTGAAATCAGCATCAAT 57.231 33.333 5.53 0.00 43.46 2.57
2573 2807 6.578163 TTCACAATCTGAAATCAGCATCAA 57.422 33.333 5.53 0.00 43.46 2.57
2574 2808 6.152154 ACATTCACAATCTGAAATCAGCATCA 59.848 34.615 5.53 0.00 42.37 3.07
2575 2809 6.561614 ACATTCACAATCTGAAATCAGCATC 58.438 36.000 5.53 0.00 42.37 3.91
2576 2810 6.525578 ACATTCACAATCTGAAATCAGCAT 57.474 33.333 5.53 0.00 42.37 3.79
2577 2811 5.970317 ACATTCACAATCTGAAATCAGCA 57.030 34.783 5.53 0.00 42.37 4.41
2578 2812 7.533426 ACTAACATTCACAATCTGAAATCAGC 58.467 34.615 5.53 0.00 42.37 4.26
2620 2854 8.135529 AGTCAAGCCTTGTAAAGTTTAATCAAC 58.864 33.333 4.04 0.00 44.25 3.18
2621 2855 8.232913 AGTCAAGCCTTGTAAAGTTTAATCAA 57.767 30.769 4.04 0.00 44.25 2.57
2622 2856 7.817418 AGTCAAGCCTTGTAAAGTTTAATCA 57.183 32.000 4.04 0.00 44.25 2.57
2623 2857 7.534239 CGAAGTCAAGCCTTGTAAAGTTTAATC 59.466 37.037 4.04 0.00 44.25 1.75
2624 2858 7.360361 CGAAGTCAAGCCTTGTAAAGTTTAAT 58.640 34.615 4.04 0.00 44.25 1.40
2625 2859 6.238538 CCGAAGTCAAGCCTTGTAAAGTTTAA 60.239 38.462 4.04 0.00 44.25 1.52
2626 2860 5.237779 CCGAAGTCAAGCCTTGTAAAGTTTA 59.762 40.000 4.04 0.00 44.25 2.01
2627 2861 4.036380 CCGAAGTCAAGCCTTGTAAAGTTT 59.964 41.667 4.04 0.00 44.25 2.66
2628 2862 3.564225 CCGAAGTCAAGCCTTGTAAAGTT 59.436 43.478 4.04 0.00 44.25 2.66
2629 2863 3.139077 CCGAAGTCAAGCCTTGTAAAGT 58.861 45.455 4.04 0.00 44.25 2.66
2630 2864 3.186613 GTCCGAAGTCAAGCCTTGTAAAG 59.813 47.826 4.04 0.00 45.69 1.85
2631 2865 3.135994 GTCCGAAGTCAAGCCTTGTAAA 58.864 45.455 4.04 0.00 0.00 2.01
2632 2866 2.103432 TGTCCGAAGTCAAGCCTTGTAA 59.897 45.455 4.04 0.00 0.00 2.41
2633 2867 1.689813 TGTCCGAAGTCAAGCCTTGTA 59.310 47.619 4.04 0.00 0.00 2.41
2634 2868 0.468226 TGTCCGAAGTCAAGCCTTGT 59.532 50.000 4.04 0.00 0.00 3.16
2635 2869 1.593196 TTGTCCGAAGTCAAGCCTTG 58.407 50.000 0.00 0.00 0.00 3.61
2636 2870 2.341846 TTTGTCCGAAGTCAAGCCTT 57.658 45.000 0.00 0.00 0.00 4.35
2637 2871 2.039084 AGATTTGTCCGAAGTCAAGCCT 59.961 45.455 0.00 0.00 0.00 4.58
2638 2872 2.427506 AGATTTGTCCGAAGTCAAGCC 58.572 47.619 0.00 0.00 0.00 4.35
2639 2873 5.122396 ACATAAGATTTGTCCGAAGTCAAGC 59.878 40.000 0.00 0.00 0.00 4.01
2640 2874 6.537566 CACATAAGATTTGTCCGAAGTCAAG 58.462 40.000 0.00 0.00 0.00 3.02
2641 2875 5.106712 GCACATAAGATTTGTCCGAAGTCAA 60.107 40.000 0.00 0.00 0.00 3.18
2642 2876 4.391830 GCACATAAGATTTGTCCGAAGTCA 59.608 41.667 0.00 0.00 0.00 3.41
2643 2877 4.391830 TGCACATAAGATTTGTCCGAAGTC 59.608 41.667 0.00 0.00 0.00 3.01
2644 2878 4.323417 TGCACATAAGATTTGTCCGAAGT 58.677 39.130 0.00 0.00 0.00 3.01
2645 2879 4.944962 TGCACATAAGATTTGTCCGAAG 57.055 40.909 0.00 0.00 0.00 3.79
2646 2880 5.240623 AGTTTGCACATAAGATTTGTCCGAA 59.759 36.000 0.00 0.00 0.00 4.30
2647 2881 4.759693 AGTTTGCACATAAGATTTGTCCGA 59.240 37.500 0.00 0.00 0.00 4.55
2648 2882 5.046910 AGTTTGCACATAAGATTTGTCCG 57.953 39.130 0.00 0.00 0.00 4.79
2649 2883 8.810652 TTTTAGTTTGCACATAAGATTTGTCC 57.189 30.769 0.00 0.00 0.00 4.02
2654 2888 9.476202 GGTTCTTTTTAGTTTGCACATAAGATT 57.524 29.630 0.00 0.00 0.00 2.40
2655 2889 7.807907 CGGTTCTTTTTAGTTTGCACATAAGAT 59.192 33.333 0.00 0.00 0.00 2.40
2656 2890 7.136119 CGGTTCTTTTTAGTTTGCACATAAGA 58.864 34.615 0.00 0.00 0.00 2.10
2657 2891 6.362283 CCGGTTCTTTTTAGTTTGCACATAAG 59.638 38.462 0.00 0.00 0.00 1.73
2658 2892 6.039493 TCCGGTTCTTTTTAGTTTGCACATAA 59.961 34.615 0.00 0.00 0.00 1.90
2659 2893 5.531659 TCCGGTTCTTTTTAGTTTGCACATA 59.468 36.000 0.00 0.00 0.00 2.29
2660 2894 4.339814 TCCGGTTCTTTTTAGTTTGCACAT 59.660 37.500 0.00 0.00 0.00 3.21
2661 2895 3.695060 TCCGGTTCTTTTTAGTTTGCACA 59.305 39.130 0.00 0.00 0.00 4.57
2662 2896 4.287720 CTCCGGTTCTTTTTAGTTTGCAC 58.712 43.478 0.00 0.00 0.00 4.57
2663 2897 3.316868 CCTCCGGTTCTTTTTAGTTTGCA 59.683 43.478 0.00 0.00 0.00 4.08
2664 2898 3.305131 CCCTCCGGTTCTTTTTAGTTTGC 60.305 47.826 0.00 0.00 0.00 3.68
2665 2899 4.139038 TCCCTCCGGTTCTTTTTAGTTTG 58.861 43.478 0.00 0.00 0.00 2.93
2666 2900 4.442401 TCCCTCCGGTTCTTTTTAGTTT 57.558 40.909 0.00 0.00 0.00 2.66
2667 2901 4.442401 TTCCCTCCGGTTCTTTTTAGTT 57.558 40.909 0.00 0.00 0.00 2.24
2668 2902 4.652679 ATTCCCTCCGGTTCTTTTTAGT 57.347 40.909 0.00 0.00 0.00 2.24
2669 2903 5.985911 TCTATTCCCTCCGGTTCTTTTTAG 58.014 41.667 0.00 0.00 0.00 1.85
2670 2904 6.570654 ATCTATTCCCTCCGGTTCTTTTTA 57.429 37.500 0.00 0.00 0.00 1.52
2671 2905 4.921644 TCTATTCCCTCCGGTTCTTTTT 57.078 40.909 0.00 0.00 0.00 1.94
2672 2906 5.452341 AATCTATTCCCTCCGGTTCTTTT 57.548 39.130 0.00 0.00 0.00 2.27
2673 2907 6.765355 ATAATCTATTCCCTCCGGTTCTTT 57.235 37.500 0.00 0.00 0.00 2.52
2674 2908 7.147880 CGATATAATCTATTCCCTCCGGTTCTT 60.148 40.741 0.00 0.00 0.00 2.52
2675 2909 6.321690 CGATATAATCTATTCCCTCCGGTTCT 59.678 42.308 0.00 0.00 0.00 3.01
2676 2910 6.505272 CGATATAATCTATTCCCTCCGGTTC 58.495 44.000 0.00 0.00 0.00 3.62
2677 2911 5.163437 GCGATATAATCTATTCCCTCCGGTT 60.163 44.000 0.00 0.00 0.00 4.44
2678 2912 4.341520 GCGATATAATCTATTCCCTCCGGT 59.658 45.833 0.00 0.00 0.00 5.28
2679 2913 4.585162 AGCGATATAATCTATTCCCTCCGG 59.415 45.833 0.00 0.00 0.00 5.14
2680 2914 5.776173 AGCGATATAATCTATTCCCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
2681 2915 8.519526 CATCTAGCGATATAATCTATTCCCTCC 58.480 40.741 0.00 0.00 0.00 4.30
2682 2916 8.026607 GCATCTAGCGATATAATCTATTCCCTC 58.973 40.741 0.00 0.00 0.00 4.30
2683 2917 7.891561 GCATCTAGCGATATAATCTATTCCCT 58.108 38.462 0.00 0.00 0.00 4.20
2700 2934 1.097232 TGCACATGTTGGCATCTAGC 58.903 50.000 6.75 0.00 44.65 3.42
2701 2935 3.129813 ACATTGCACATGTTGGCATCTAG 59.870 43.478 11.25 5.31 40.17 2.43
2702 2936 3.090790 ACATTGCACATGTTGGCATCTA 58.909 40.909 11.25 0.00 40.17 1.98
2703 2937 1.897133 ACATTGCACATGTTGGCATCT 59.103 42.857 11.25 0.80 40.17 2.90
2704 2938 1.996898 CACATTGCACATGTTGGCATC 59.003 47.619 11.25 0.00 40.17 3.91
2705 2939 1.345089 ACACATTGCACATGTTGGCAT 59.655 42.857 11.25 0.72 40.17 4.40
2706 2940 0.751452 ACACATTGCACATGTTGGCA 59.249 45.000 6.75 6.75 38.46 4.92
2707 2941 1.141645 CACACATTGCACATGTTGGC 58.858 50.000 10.56 0.00 0.00 4.52
2708 2942 2.128821 CACACACATTGCACATGTTGG 58.871 47.619 10.56 8.83 0.00 3.77
2709 2943 3.047093 CTCACACACATTGCACATGTTG 58.953 45.455 10.56 13.01 0.00 3.33
2710 2944 2.034939 CCTCACACACATTGCACATGTT 59.965 45.455 10.56 2.98 0.00 2.71
2711 2945 1.610038 CCTCACACACATTGCACATGT 59.390 47.619 8.21 8.21 0.00 3.21
2712 2946 1.610038 ACCTCACACACATTGCACATG 59.390 47.619 7.16 7.16 0.00 3.21
2713 2947 1.985473 ACCTCACACACATTGCACAT 58.015 45.000 0.00 0.00 0.00 3.21
2714 2948 2.493035 CTACCTCACACACATTGCACA 58.507 47.619 0.00 0.00 0.00 4.57
2715 2949 1.197721 GCTACCTCACACACATTGCAC 59.802 52.381 0.00 0.00 0.00 4.57
2716 2950 1.522668 GCTACCTCACACACATTGCA 58.477 50.000 0.00 0.00 0.00 4.08
2717 2951 0.443869 CGCTACCTCACACACATTGC 59.556 55.000 0.00 0.00 0.00 3.56
2718 2952 1.795768 ACGCTACCTCACACACATTG 58.204 50.000 0.00 0.00 0.00 2.82
2728 2962 1.035932 TCCTGCCACTACGCTACCTC 61.036 60.000 0.00 0.00 0.00 3.85
2729 2963 0.397254 ATCCTGCCACTACGCTACCT 60.397 55.000 0.00 0.00 0.00 3.08
2761 2995 8.078596 GCTAGAAGAACCAATATATTTTGCAGG 58.921 37.037 0.00 0.00 0.00 4.85
2763 2997 7.014230 GGGCTAGAAGAACCAATATATTTTGCA 59.986 37.037 0.00 0.00 0.00 4.08
2765 2999 7.725844 AGGGGCTAGAAGAACCAATATATTTTG 59.274 37.037 0.00 0.00 0.00 2.44
2766 3000 7.725844 CAGGGGCTAGAAGAACCAATATATTTT 59.274 37.037 0.00 0.00 0.00 1.82
2790 3032 6.650807 ACAAGTGTACCAATAATCTCACACAG 59.349 38.462 5.57 0.83 38.93 3.66
2802 3044 4.968259 TGTCAGCTTACAAGTGTACCAAT 58.032 39.130 0.00 0.00 0.00 3.16
2859 3101 5.417580 GGGTCAATGAAAGCCACAGTTATAA 59.582 40.000 0.00 0.00 34.37 0.98
2860 3102 4.947388 GGGTCAATGAAAGCCACAGTTATA 59.053 41.667 0.00 0.00 34.37 0.98
2895 3138 5.045872 TGAGATATCACTCAGTTTCATGCG 58.954 41.667 5.32 0.00 41.21 4.73
2899 3142 5.410924 CGGTTGAGATATCACTCAGTTTCA 58.589 41.667 5.32 0.00 45.63 2.69
2908 3151 5.109903 AGTAACTTGCGGTTGAGATATCAC 58.890 41.667 5.32 0.00 38.75 3.06
2918 3161 0.323957 GGAGGGAGTAACTTGCGGTT 59.676 55.000 0.81 0.81 41.54 4.44
2919 3162 1.885163 CGGAGGGAGTAACTTGCGGT 61.885 60.000 0.00 0.00 0.00 5.68
2921 3164 1.810030 GCGGAGGGAGTAACTTGCG 60.810 63.158 0.00 0.00 0.00 4.85
2971 3223 5.186797 TGATTTTGGTCAAAGTTTGTGAGGT 59.813 36.000 15.08 0.00 0.00 3.85
2974 3226 9.658799 TTAAATGATTTTGGTCAAAGTTTGTGA 57.341 25.926 15.08 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.