Multiple sequence alignment - TraesCS6D01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G262700 chr6D 100.000 3628 0 0 1 3628 371293595 371297222 0.000000e+00 6700.0
1 TraesCS6D01G262700 chr6D 91.071 56 4 1 3087 3142 156430575 156430629 1.400000e-09 75.0
2 TraesCS6D01G262700 chr6B 93.127 2168 108 26 860 3000 556486315 556488468 0.000000e+00 3140.0
3 TraesCS6D01G262700 chr6B 84.161 846 72 21 45 852 556485399 556486220 0.000000e+00 763.0
4 TraesCS6D01G262700 chr6A 95.626 1349 45 10 1657 3000 512338648 512339987 0.000000e+00 2152.0
5 TraesCS6D01G262700 chr6A 95.937 763 23 2 860 1620 512337889 512338645 0.000000e+00 1230.0
6 TraesCS6D01G262700 chr6A 85.878 871 83 21 2 843 512336932 512337791 0.000000e+00 891.0
7 TraesCS6D01G262700 chr6A 91.406 128 8 1 3235 3359 512340242 512340369 4.820000e-39 172.0
8 TraesCS6D01G262700 chr7B 81.068 618 53 22 281 852 428478175 428478774 5.560000e-118 435.0
9 TraesCS6D01G262700 chr7B 94.366 142 6 1 860 999 428478870 428479011 2.190000e-52 217.0
10 TraesCS6D01G262700 chr7B 90.385 52 4 1 3086 3137 691028725 691028775 2.340000e-07 67.6
11 TraesCS6D01G262700 chr3A 92.727 55 4 0 3086 3140 745380567 745380513 3.000000e-11 80.5
12 TraesCS6D01G262700 chrUn 100.000 38 0 0 3100 3137 104683317 104683354 1.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G262700 chr6D 371293595 371297222 3627 False 6700.00 6700 100.00000 1 3628 1 chr6D.!!$F2 3627
1 TraesCS6D01G262700 chr6B 556485399 556488468 3069 False 1951.50 3140 88.64400 45 3000 2 chr6B.!!$F1 2955
2 TraesCS6D01G262700 chr6A 512336932 512340369 3437 False 1111.25 2152 92.21175 2 3359 4 chr6A.!!$F1 3357
3 TraesCS6D01G262700 chr7B 428478175 428479011 836 False 326.00 435 87.71700 281 999 2 chr7B.!!$F2 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 317 0.038343 TTGTCCCCGTACGTGTAAGC 60.038 55.0 15.21 0.0 0.0 3.09 F
322 324 0.734942 CGTACGTGTAAGCTGGGGTG 60.735 60.0 7.22 0.0 0.0 4.61 F
1426 1602 0.813821 GGATGAAGGCTTTGGCTCAC 59.186 55.0 0.00 0.0 37.5 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2291 2485 0.953727 TGCAAGAATGTCAGTGGCAC 59.046 50.0 10.29 10.29 0.0 5.01 R
2292 2486 1.689984 TTGCAAGAATGTCAGTGGCA 58.310 45.0 0.00 0.00 0.0 4.92 R
3361 3629 0.258774 ATGGCCCTAAATTCGGTGCT 59.741 50.0 0.00 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.186817 GCTCGCGGCGTATATATAGATCT 59.813 47.826 22.90 0.00 0.00 2.75
107 108 2.409651 GTCTGGCGCTAGTCTCGG 59.590 66.667 20.91 0.70 0.00 4.63
199 201 4.201628 GGTTCATTTGTTCGTCAGATCTCG 60.202 45.833 0.00 0.00 0.00 4.04
249 251 5.278604 GTTTTGCACGATCCTAGTTTGTTT 58.721 37.500 0.00 0.00 0.00 2.83
269 271 0.460109 TCATCTGGATCGCGTTGGTG 60.460 55.000 5.77 0.00 0.00 4.17
293 295 3.904586 GATCTCTGGATCCGGAAGC 57.095 57.895 23.67 13.60 41.70 3.86
299 301 2.267961 GGATCCGGAAGCCGTTGT 59.732 61.111 9.01 0.00 46.80 3.32
310 312 2.431260 CCGTTGTCCCCGTACGTG 60.431 66.667 15.21 1.82 33.68 4.49
311 313 2.336088 CGTTGTCCCCGTACGTGT 59.664 61.111 15.21 0.00 0.00 4.49
315 317 0.038343 TTGTCCCCGTACGTGTAAGC 60.038 55.000 15.21 0.00 0.00 3.09
316 318 0.895100 TGTCCCCGTACGTGTAAGCT 60.895 55.000 15.21 0.00 0.00 3.74
322 324 0.734942 CGTACGTGTAAGCTGGGGTG 60.735 60.000 7.22 0.00 0.00 4.61
325 327 1.369692 CGTGTAAGCTGGGGTGTGA 59.630 57.895 0.00 0.00 0.00 3.58
335 337 2.290960 GCTGGGGTGTGAGATAAAAGGT 60.291 50.000 0.00 0.00 0.00 3.50
336 338 3.610911 CTGGGGTGTGAGATAAAAGGTC 58.389 50.000 0.00 0.00 0.00 3.85
393 401 2.239400 TCTGATCTGTTGACCTGACGT 58.761 47.619 0.00 0.00 0.00 4.34
433 465 4.460382 ACTTGGATGTTGTGGCAATAGAAG 59.540 41.667 0.00 0.00 0.00 2.85
445 477 5.355350 GTGGCAATAGAAGCAGTTAATGTCT 59.645 40.000 0.00 0.00 0.00 3.41
457 489 5.751028 GCAGTTAATGTCTACAGATCCTGAC 59.249 44.000 0.45 0.00 35.18 3.51
466 498 3.864789 ACAGATCCTGACCTGTTTGTT 57.135 42.857 0.45 0.00 40.40 2.83
504 541 5.557891 AGATGCAAGTAGATTTCTGTTGC 57.442 39.130 16.62 16.62 42.63 4.17
509 546 4.855388 GCAAGTAGATTTCTGTTGCACATG 59.145 41.667 17.76 0.00 42.24 3.21
513 550 4.494350 AGATTTCTGTTGCACATGACAC 57.506 40.909 0.00 0.00 0.00 3.67
558 596 7.384660 GTCTTTGCTCATGATTAGGTAGATCTG 59.615 40.741 5.18 0.00 0.00 2.90
583 621 3.389925 TGTCGTAGTGTGGGTTTTAGG 57.610 47.619 0.00 0.00 0.00 2.69
687 725 2.094390 GTGCTGATTGTGATTGCCATGT 60.094 45.455 0.00 0.00 0.00 3.21
693 731 6.314400 GCTGATTGTGATTGCCATGTTTTTAT 59.686 34.615 0.00 0.00 0.00 1.40
706 744 8.492782 TGCCATGTTTTTATTATCCCATTTGAT 58.507 29.630 0.00 0.00 0.00 2.57
727 765 7.899178 TGATTATTTTCAAGCGTCTCAACTA 57.101 32.000 0.00 0.00 0.00 2.24
728 766 7.963981 TGATTATTTTCAAGCGTCTCAACTAG 58.036 34.615 0.00 0.00 0.00 2.57
729 767 6.721571 TTATTTTCAAGCGTCTCAACTAGG 57.278 37.500 0.00 0.00 0.00 3.02
730 768 3.746045 TTTCAAGCGTCTCAACTAGGT 57.254 42.857 0.00 0.00 0.00 3.08
742 780 4.100963 TCTCAACTAGGTTTTCTGTCAGCA 59.899 41.667 0.00 0.00 0.00 4.41
843 894 4.080863 AGGGCTAACCAAGTTGTAGAGATG 60.081 45.833 1.45 0.00 43.89 2.90
852 934 5.070446 CCAAGTTGTAGAGATGGCTATGGTA 59.930 44.000 1.45 0.00 0.00 3.25
971 1147 9.613428 ATTACATCAAGCTTGCTAACTTATACA 57.387 29.630 21.99 0.00 0.00 2.29
1426 1602 0.813821 GGATGAAGGCTTTGGCTCAC 59.186 55.000 0.00 0.00 37.50 3.51
1482 1658 4.631234 ACTTCCCAACTCAGGTATCCATA 58.369 43.478 0.00 0.00 0.00 2.74
1484 1660 5.072329 ACTTCCCAACTCAGGTATCCATATG 59.928 44.000 0.00 0.00 0.00 1.78
1493 1669 7.175104 ACTCAGGTATCCATATGTTGTTGTTT 58.825 34.615 1.24 0.00 0.00 2.83
1499 1681 8.707839 GGTATCCATATGTTGTTGTTTTTGTTG 58.292 33.333 1.24 0.00 0.00 3.33
1524 1706 7.276218 TGTGCTTATTTTCATTAGCTTTCATGC 59.724 33.333 0.00 0.00 36.24 4.06
1632 1814 8.510243 TGTAATGTTATTTGTGATGATGCTCT 57.490 30.769 0.00 0.00 0.00 4.09
1686 1870 5.580297 TGTTTGTCTTCTGTTTTTGAATGCC 59.420 36.000 0.00 0.00 0.00 4.40
1687 1871 5.596836 TTGTCTTCTGTTTTTGAATGCCT 57.403 34.783 0.00 0.00 0.00 4.75
1706 1893 3.181506 GCCTAGTTTTACAGCTGATGCAC 60.182 47.826 23.35 11.43 42.74 4.57
1835 2026 9.515020 TTGCTATTGTTTTCTTGTTCTAACTTG 57.485 29.630 0.00 0.00 0.00 3.16
1969 2162 1.529010 CCTTGCTTCTGGTGGTGCA 60.529 57.895 0.00 0.00 0.00 4.57
2068 2261 2.664081 GGGTGGAGGTGAGAGGCAG 61.664 68.421 0.00 0.00 0.00 4.85
2197 2390 5.169295 GGTCTGTACTTTGGACTGTATGAC 58.831 45.833 0.00 0.00 0.00 3.06
2250 2443 4.771054 TCTCCAGGTTTGTTCTAGTACCTC 59.229 45.833 0.00 0.00 38.93 3.85
2253 2446 2.895404 AGGTTTGTTCTAGTACCTCGCA 59.105 45.455 0.00 0.00 36.25 5.10
2269 2463 7.985184 AGTACCTCGCAACATTCATTCTATTTA 59.015 33.333 0.00 0.00 0.00 1.40
2291 2485 9.965824 ATTTACAAATTTCTCTAGTTTGTGTGG 57.034 29.630 15.14 0.00 43.57 4.17
2292 2486 8.514330 TTACAAATTTCTCTAGTTTGTGTGGT 57.486 30.769 15.14 0.61 43.57 4.16
2304 2499 0.106769 TGTGTGGTGCCACTGACATT 60.107 50.000 20.46 0.00 46.30 2.71
2310 2505 0.953727 GTGCCACTGACATTCTTGCA 59.046 50.000 0.00 0.00 0.00 4.08
2311 2506 1.337703 GTGCCACTGACATTCTTGCAA 59.662 47.619 0.00 0.00 0.00 4.08
2315 2510 2.624838 CCACTGACATTCTTGCAAACCT 59.375 45.455 0.00 0.00 0.00 3.50
2325 2520 2.426738 TCTTGCAAACCTTTCACCTGTG 59.573 45.455 0.00 0.00 0.00 3.66
2435 2630 3.071312 GCAGAAGGATGATGATGACCTCT 59.929 47.826 0.00 0.00 31.89 3.69
2540 2735 2.184020 CTGGTGCCAACATCCTCCGA 62.184 60.000 0.00 0.00 0.00 4.55
2847 3042 4.553330 TCATAGGGGTTGAGTTTGAGTC 57.447 45.455 0.00 0.00 0.00 3.36
2902 3097 9.289303 CAATTTTCCTTAAATACATTGTCCTCG 57.711 33.333 0.00 0.00 35.39 4.63
2953 3148 7.823745 AGTTTATTCTGTTGGTCTTGACATT 57.176 32.000 3.08 0.00 0.00 2.71
2982 3177 8.988064 TTTCTGTTTGCATTGTTTAGTTTGTA 57.012 26.923 0.00 0.00 0.00 2.41
2984 3179 7.990917 TCTGTTTGCATTGTTTAGTTTGTAGA 58.009 30.769 0.00 0.00 0.00 2.59
2985 3180 8.462811 TCTGTTTGCATTGTTTAGTTTGTAGAA 58.537 29.630 0.00 0.00 0.00 2.10
3002 3221 3.439857 AGAATCTGTTGCTTTGCCCTA 57.560 42.857 0.00 0.00 0.00 3.53
3014 3233 5.260424 TGCTTTGCCCTATGATTCTTGTTA 58.740 37.500 0.00 0.00 0.00 2.41
3019 3238 8.677148 TTTGCCCTATGATTCTTGTTATACTC 57.323 34.615 0.00 0.00 0.00 2.59
3021 3240 6.041637 TGCCCTATGATTCTTGTTATACTCGT 59.958 38.462 0.00 0.00 0.00 4.18
3036 3255 5.763444 ATACTCGTTTTGTTCGTGAGATG 57.237 39.130 0.00 0.00 41.60 2.90
3038 3257 1.529438 TCGTTTTGTTCGTGAGATGCC 59.471 47.619 0.00 0.00 41.60 4.40
3039 3258 1.531149 CGTTTTGTTCGTGAGATGCCT 59.469 47.619 0.00 0.00 41.60 4.75
3043 3262 5.062934 CGTTTTGTTCGTGAGATGCCTATTA 59.937 40.000 0.00 0.00 41.60 0.98
3044 3263 6.238103 CGTTTTGTTCGTGAGATGCCTATTAT 60.238 38.462 0.00 0.00 41.60 1.28
3046 3265 6.844696 TTGTTCGTGAGATGCCTATTATTC 57.155 37.500 0.00 0.00 41.60 1.75
3048 3267 6.216569 TGTTCGTGAGATGCCTATTATTCTC 58.783 40.000 0.00 0.00 41.60 2.87
3049 3268 5.048153 TCGTGAGATGCCTATTATTCTCG 57.952 43.478 0.00 0.00 37.92 4.04
3050 3269 4.519350 TCGTGAGATGCCTATTATTCTCGT 59.481 41.667 0.00 0.00 37.92 4.18
3053 3272 6.524933 CGTGAGATGCCTATTATTCTCGTTAG 59.475 42.308 0.00 0.00 37.92 2.34
3054 3273 7.371936 GTGAGATGCCTATTATTCTCGTTAGT 58.628 38.462 0.00 0.00 37.92 2.24
3058 3277 9.736414 AGATGCCTATTATTCTCGTTAGTACTA 57.264 33.333 0.00 0.00 0.00 1.82
3067 3286 7.700022 ATTCTCGTTAGTACTACCTCAGTTT 57.300 36.000 0.91 0.00 38.80 2.66
3068 3287 7.516198 TTCTCGTTAGTACTACCTCAGTTTT 57.484 36.000 0.91 0.00 38.80 2.43
3079 3298 7.730364 ACTACCTCAGTTTTGAAATGTAGTG 57.270 36.000 0.00 0.00 39.36 2.74
3080 3299 5.438761 ACCTCAGTTTTGAAATGTAGTGC 57.561 39.130 0.00 0.00 31.69 4.40
3081 3300 4.887071 ACCTCAGTTTTGAAATGTAGTGCA 59.113 37.500 0.00 0.00 31.69 4.57
3082 3301 5.536161 ACCTCAGTTTTGAAATGTAGTGCAT 59.464 36.000 0.00 0.00 40.03 3.96
3083 3302 6.714810 ACCTCAGTTTTGAAATGTAGTGCATA 59.285 34.615 0.00 0.00 36.67 3.14
3084 3303 7.023575 CCTCAGTTTTGAAATGTAGTGCATAC 58.976 38.462 0.00 0.00 36.67 2.39
3085 3304 7.308529 CCTCAGTTTTGAAATGTAGTGCATACA 60.309 37.037 10.18 10.18 39.71 2.29
3097 3316 3.067106 AGTGCATACAAGTCAAACCTCG 58.933 45.455 0.00 0.00 0.00 4.63
3117 3336 5.463061 CCTCGCAAACTTTGATCAAATTTGT 59.537 36.000 30.50 21.61 34.76 2.83
3119 3338 5.233902 TCGCAAACTTTGATCAAATTTGTGG 59.766 36.000 33.90 28.04 38.30 4.17
3120 3339 5.233902 CGCAAACTTTGATCAAATTTGTGGA 59.766 36.000 31.41 13.19 36.71 4.02
3121 3340 6.562640 CGCAAACTTTGATCAAATTTGTGGAG 60.563 38.462 31.41 23.56 36.71 3.86
3122 3341 6.479660 GCAAACTTTGATCAAATTTGTGGAGA 59.520 34.615 30.50 11.09 34.76 3.71
3123 3342 7.011295 GCAAACTTTGATCAAATTTGTGGAGAA 59.989 33.333 30.50 10.73 34.76 2.87
3124 3343 8.881743 CAAACTTTGATCAAATTTGTGGAGAAA 58.118 29.630 26.96 9.68 31.72 2.52
3125 3344 9.447157 AAACTTTGATCAAATTTGTGGAGAAAA 57.553 25.926 20.76 9.86 0.00 2.29
3198 3463 7.658179 TTGACTTACAAAAACATTTGCAACA 57.342 28.000 0.00 0.00 35.39 3.33
3199 3464 7.054855 TGACTTACAAAAACATTTGCAACAC 57.945 32.000 0.00 0.00 35.42 3.32
3200 3465 6.646653 TGACTTACAAAAACATTTGCAACACA 59.353 30.769 0.00 0.00 35.42 3.72
3201 3466 7.332926 TGACTTACAAAAACATTTGCAACACAT 59.667 29.630 0.00 0.00 35.42 3.21
3202 3467 7.462731 ACTTACAAAAACATTTGCAACACATG 58.537 30.769 0.00 2.98 35.42 3.21
3203 3468 7.332926 ACTTACAAAAACATTTGCAACACATGA 59.667 29.630 14.91 0.00 35.42 3.07
3204 3469 6.109320 ACAAAAACATTTGCAACACATGAG 57.891 33.333 14.91 0.00 35.42 2.90
3205 3470 5.642919 ACAAAAACATTTGCAACACATGAGT 59.357 32.000 14.91 0.00 35.42 3.41
3206 3471 6.149142 ACAAAAACATTTGCAACACATGAGTT 59.851 30.769 14.91 0.00 35.42 3.01
3207 3472 5.971895 AAACATTTGCAACACATGAGTTC 57.028 34.783 14.91 2.68 0.00 3.01
3208 3473 4.924305 ACATTTGCAACACATGAGTTCT 57.076 36.364 14.91 0.00 0.00 3.01
3209 3474 6.389830 AACATTTGCAACACATGAGTTCTA 57.610 33.333 14.91 0.00 0.00 2.10
3210 3475 5.762045 ACATTTGCAACACATGAGTTCTAC 58.238 37.500 14.91 0.11 0.00 2.59
3211 3476 4.829064 TTTGCAACACATGAGTTCTACC 57.171 40.909 5.47 0.00 0.00 3.18
3212 3477 3.769739 TGCAACACATGAGTTCTACCT 57.230 42.857 5.47 0.00 0.00 3.08
3213 3478 4.085357 TGCAACACATGAGTTCTACCTT 57.915 40.909 5.47 0.00 0.00 3.50
3214 3479 4.460263 TGCAACACATGAGTTCTACCTTT 58.540 39.130 5.47 0.00 0.00 3.11
3215 3480 4.275689 TGCAACACATGAGTTCTACCTTTG 59.724 41.667 5.47 0.00 0.00 2.77
3216 3481 4.275936 GCAACACATGAGTTCTACCTTTGT 59.724 41.667 5.47 0.00 0.00 2.83
3217 3482 5.468746 GCAACACATGAGTTCTACCTTTGTA 59.531 40.000 5.47 0.00 0.00 2.41
3218 3483 6.149474 GCAACACATGAGTTCTACCTTTGTAT 59.851 38.462 5.47 0.00 0.00 2.29
3219 3484 7.308589 GCAACACATGAGTTCTACCTTTGTATT 60.309 37.037 5.47 0.00 0.00 1.89
3220 3485 7.907214 ACACATGAGTTCTACCTTTGTATTC 57.093 36.000 0.00 0.00 0.00 1.75
3221 3486 7.680730 ACACATGAGTTCTACCTTTGTATTCT 58.319 34.615 0.00 0.00 0.00 2.40
3222 3487 8.157476 ACACATGAGTTCTACCTTTGTATTCTT 58.843 33.333 0.00 0.00 0.00 2.52
3223 3488 9.653287 CACATGAGTTCTACCTTTGTATTCTTA 57.347 33.333 0.00 0.00 0.00 2.10
3224 3489 9.877178 ACATGAGTTCTACCTTTGTATTCTTAG 57.123 33.333 0.00 0.00 0.00 2.18
3225 3490 8.821894 CATGAGTTCTACCTTTGTATTCTTAGC 58.178 37.037 0.00 0.00 0.00 3.09
3226 3491 8.135382 TGAGTTCTACCTTTGTATTCTTAGCT 57.865 34.615 0.00 0.00 0.00 3.32
3227 3492 9.251440 TGAGTTCTACCTTTGTATTCTTAGCTA 57.749 33.333 0.00 0.00 0.00 3.32
3228 3493 9.738832 GAGTTCTACCTTTGTATTCTTAGCTAG 57.261 37.037 0.00 0.00 0.00 3.42
3229 3494 8.198778 AGTTCTACCTTTGTATTCTTAGCTAGC 58.801 37.037 6.62 6.62 0.00 3.42
3230 3495 7.655521 TCTACCTTTGTATTCTTAGCTAGCA 57.344 36.000 18.83 0.00 0.00 3.49
3231 3496 7.717568 TCTACCTTTGTATTCTTAGCTAGCAG 58.282 38.462 18.83 6.61 0.00 4.24
3232 3497 6.546428 ACCTTTGTATTCTTAGCTAGCAGA 57.454 37.500 18.83 9.21 0.00 4.26
3233 3498 7.130681 ACCTTTGTATTCTTAGCTAGCAGAT 57.869 36.000 18.83 5.61 0.00 2.90
3265 3530 5.694995 TGATGGTTTTCTCTCTTCCTGTTT 58.305 37.500 0.00 0.00 0.00 2.83
3266 3531 6.837312 TGATGGTTTTCTCTCTTCCTGTTTA 58.163 36.000 0.00 0.00 0.00 2.01
3267 3532 7.287061 TGATGGTTTTCTCTCTTCCTGTTTAA 58.713 34.615 0.00 0.00 0.00 1.52
3271 3536 6.017026 GGTTTTCTCTCTTCCTGTTTAACCTG 60.017 42.308 0.00 0.00 0.00 4.00
3324 3592 3.125316 CGTGTACCATCTTTTGCTTCTCC 59.875 47.826 0.00 0.00 0.00 3.71
3326 3594 4.702131 GTGTACCATCTTTTGCTTCTCCAT 59.298 41.667 0.00 0.00 0.00 3.41
3359 3627 7.671398 AGTGATTTGAAAATGACCCATCTAAGT 59.329 33.333 2.32 0.00 33.72 2.24
3360 3628 8.306761 GTGATTTGAAAATGACCCATCTAAGTT 58.693 33.333 0.00 0.00 0.00 2.66
3361 3629 9.527157 TGATTTGAAAATGACCCATCTAAGTTA 57.473 29.630 0.00 0.00 0.00 2.24
3363 3631 7.391148 TTGAAAATGACCCATCTAAGTTAGC 57.609 36.000 4.93 0.00 0.00 3.09
3364 3632 6.480763 TGAAAATGACCCATCTAAGTTAGCA 58.519 36.000 4.93 0.00 0.00 3.49
3365 3633 6.374333 TGAAAATGACCCATCTAAGTTAGCAC 59.626 38.462 4.93 0.00 0.00 4.40
3366 3634 3.906720 TGACCCATCTAAGTTAGCACC 57.093 47.619 4.93 0.00 0.00 5.01
3367 3635 2.167693 TGACCCATCTAAGTTAGCACCG 59.832 50.000 4.93 0.00 0.00 4.94
3368 3636 2.429610 GACCCATCTAAGTTAGCACCGA 59.570 50.000 4.93 0.00 0.00 4.69
3369 3637 2.835764 ACCCATCTAAGTTAGCACCGAA 59.164 45.455 4.93 0.00 0.00 4.30
3370 3638 3.454812 ACCCATCTAAGTTAGCACCGAAT 59.545 43.478 4.93 0.00 0.00 3.34
3371 3639 4.080526 ACCCATCTAAGTTAGCACCGAATT 60.081 41.667 4.93 0.00 0.00 2.17
3372 3640 4.881850 CCCATCTAAGTTAGCACCGAATTT 59.118 41.667 4.93 0.00 0.00 1.82
3373 3641 6.053005 CCCATCTAAGTTAGCACCGAATTTA 58.947 40.000 4.93 0.00 0.00 1.40
3374 3642 6.202954 CCCATCTAAGTTAGCACCGAATTTAG 59.797 42.308 4.93 0.00 31.05 1.85
3375 3643 6.202954 CCATCTAAGTTAGCACCGAATTTAGG 59.797 42.308 4.93 0.00 30.87 2.69
3376 3644 5.667466 TCTAAGTTAGCACCGAATTTAGGG 58.333 41.667 4.93 0.00 30.87 3.53
3377 3645 2.640184 AGTTAGCACCGAATTTAGGGC 58.360 47.619 0.45 0.85 0.00 5.19
3378 3646 1.674441 GTTAGCACCGAATTTAGGGCC 59.326 52.381 0.00 0.00 0.00 5.80
3379 3647 0.913205 TAGCACCGAATTTAGGGCCA 59.087 50.000 6.18 0.00 0.00 5.36
3380 3648 0.258774 AGCACCGAATTTAGGGCCAT 59.741 50.000 6.18 0.00 0.00 4.40
3381 3649 1.493022 AGCACCGAATTTAGGGCCATA 59.507 47.619 6.18 0.00 0.00 2.74
3382 3650 1.880027 GCACCGAATTTAGGGCCATAG 59.120 52.381 6.18 0.00 0.00 2.23
3383 3651 2.504367 CACCGAATTTAGGGCCATAGG 58.496 52.381 6.18 0.83 0.00 2.57
3384 3652 1.423921 ACCGAATTTAGGGCCATAGGG 59.576 52.381 6.18 2.06 37.18 3.53
3385 3653 1.423921 CCGAATTTAGGGCCATAGGGT 59.576 52.381 6.18 0.00 36.17 4.34
3386 3654 2.158519 CCGAATTTAGGGCCATAGGGTT 60.159 50.000 6.18 0.00 36.17 4.11
3387 3655 3.562182 CGAATTTAGGGCCATAGGGTTT 58.438 45.455 6.18 0.00 36.17 3.27
3388 3656 3.317993 CGAATTTAGGGCCATAGGGTTTG 59.682 47.826 6.18 0.00 36.17 2.93
3389 3657 4.542697 GAATTTAGGGCCATAGGGTTTGA 58.457 43.478 6.18 0.00 36.17 2.69
3390 3658 4.618378 ATTTAGGGCCATAGGGTTTGAA 57.382 40.909 6.18 0.00 36.17 2.69
3391 3659 4.405756 TTTAGGGCCATAGGGTTTGAAA 57.594 40.909 6.18 0.00 36.17 2.69
3392 3660 4.618378 TTAGGGCCATAGGGTTTGAAAT 57.382 40.909 6.18 0.00 36.17 2.17
3393 3661 3.032265 AGGGCCATAGGGTTTGAAATC 57.968 47.619 6.18 0.00 36.17 2.17
3394 3662 2.587307 AGGGCCATAGGGTTTGAAATCT 59.413 45.455 6.18 0.00 36.17 2.40
3395 3663 3.791545 AGGGCCATAGGGTTTGAAATCTA 59.208 43.478 6.18 0.00 36.17 1.98
3396 3664 4.420214 AGGGCCATAGGGTTTGAAATCTAT 59.580 41.667 6.18 0.00 36.17 1.98
3397 3665 4.524328 GGGCCATAGGGTTTGAAATCTATG 59.476 45.833 4.39 16.96 38.95 2.23
3401 3669 7.986085 CCATAGGGTTTGAAATCTATGGTAG 57.014 40.000 25.46 12.35 46.94 3.18
3402 3670 7.518188 CCATAGGGTTTGAAATCTATGGTAGT 58.482 38.462 25.46 0.96 46.94 2.73
3403 3671 7.998964 CCATAGGGTTTGAAATCTATGGTAGTT 59.001 37.037 25.46 0.47 46.94 2.24
3404 3672 9.408648 CATAGGGTTTGAAATCTATGGTAGTTT 57.591 33.333 16.49 0.00 36.87 2.66
3405 3673 7.703058 AGGGTTTGAAATCTATGGTAGTTTG 57.297 36.000 0.00 0.00 0.00 2.93
3406 3674 7.466804 AGGGTTTGAAATCTATGGTAGTTTGA 58.533 34.615 0.00 0.00 0.00 2.69
3407 3675 8.116026 AGGGTTTGAAATCTATGGTAGTTTGAT 58.884 33.333 0.00 0.00 0.00 2.57
3408 3676 8.749354 GGGTTTGAAATCTATGGTAGTTTGATT 58.251 33.333 0.00 0.00 0.00 2.57
3409 3677 9.788960 GGTTTGAAATCTATGGTAGTTTGATTC 57.211 33.333 0.00 0.00 0.00 2.52
3410 3678 9.788960 GTTTGAAATCTATGGTAGTTTGATTCC 57.211 33.333 0.00 0.00 0.00 3.01
3411 3679 8.519799 TTGAAATCTATGGTAGTTTGATTCCC 57.480 34.615 0.00 0.00 0.00 3.97
3412 3680 7.638444 TGAAATCTATGGTAGTTTGATTCCCA 58.362 34.615 0.00 0.00 0.00 4.37
3413 3681 7.775093 TGAAATCTATGGTAGTTTGATTCCCAG 59.225 37.037 0.00 0.00 0.00 4.45
3414 3682 5.630415 TCTATGGTAGTTTGATTCCCAGG 57.370 43.478 0.00 0.00 0.00 4.45
3415 3683 5.285401 TCTATGGTAGTTTGATTCCCAGGA 58.715 41.667 0.00 0.00 0.00 3.86
3416 3684 5.911178 TCTATGGTAGTTTGATTCCCAGGAT 59.089 40.000 0.00 0.00 0.00 3.24
3417 3685 4.946160 TGGTAGTTTGATTCCCAGGATT 57.054 40.909 0.00 0.00 0.00 3.01
3418 3686 4.599041 TGGTAGTTTGATTCCCAGGATTG 58.401 43.478 0.00 0.00 0.00 2.67
3419 3687 4.290985 TGGTAGTTTGATTCCCAGGATTGA 59.709 41.667 0.00 0.00 0.00 2.57
3420 3688 5.222233 TGGTAGTTTGATTCCCAGGATTGAA 60.222 40.000 0.00 0.00 0.00 2.69
3421 3689 5.893824 GGTAGTTTGATTCCCAGGATTGAAT 59.106 40.000 0.00 0.00 34.02 2.57
3422 3690 6.039829 GGTAGTTTGATTCCCAGGATTGAATC 59.960 42.308 9.09 9.09 44.52 2.52
3444 3712 5.437060 TCCTATAGGATTTGTTCACAAGGC 58.563 41.667 18.00 0.00 39.78 4.35
3445 3713 5.045213 TCCTATAGGATTTGTTCACAAGGCA 60.045 40.000 18.00 0.00 39.78 4.75
3446 3714 5.829924 CCTATAGGATTTGTTCACAAGGCAT 59.170 40.000 14.11 0.00 35.63 4.40
3447 3715 5.841957 ATAGGATTTGTTCACAAGGCATC 57.158 39.130 0.00 0.00 37.15 3.91
3448 3716 3.499338 AGGATTTGTTCACAAGGCATCA 58.501 40.909 5.59 0.00 37.15 3.07
3449 3717 4.091549 AGGATTTGTTCACAAGGCATCAT 58.908 39.130 5.59 0.00 37.15 2.45
3450 3718 4.159135 AGGATTTGTTCACAAGGCATCATC 59.841 41.667 5.59 0.34 37.15 2.92
3451 3719 4.159135 GGATTTGTTCACAAGGCATCATCT 59.841 41.667 5.59 0.00 37.15 2.90
3452 3720 5.337009 GGATTTGTTCACAAGGCATCATCTT 60.337 40.000 5.59 0.00 37.15 2.40
3453 3721 4.508461 TTGTTCACAAGGCATCATCTTG 57.492 40.909 0.00 0.00 45.03 3.02
3454 3722 3.753815 TGTTCACAAGGCATCATCTTGA 58.246 40.909 10.30 0.00 42.94 3.02
3455 3723 4.143543 TGTTCACAAGGCATCATCTTGAA 58.856 39.130 10.30 0.00 42.94 2.69
3456 3724 4.583907 TGTTCACAAGGCATCATCTTGAAA 59.416 37.500 10.30 2.72 42.94 2.69
3457 3725 5.068855 TGTTCACAAGGCATCATCTTGAAAA 59.931 36.000 10.30 2.43 42.94 2.29
3458 3726 5.787953 TCACAAGGCATCATCTTGAAAAA 57.212 34.783 10.30 0.00 42.94 1.94
3481 3749 7.992180 AAAATCATCTGTTTTTCTGTGACAC 57.008 32.000 0.00 0.00 0.00 3.67
3482 3750 4.794248 TCATCTGTTTTTCTGTGACACG 57.206 40.909 0.22 0.00 0.00 4.49
3483 3751 4.438148 TCATCTGTTTTTCTGTGACACGA 58.562 39.130 0.22 0.00 0.00 4.35
3484 3752 5.056480 TCATCTGTTTTTCTGTGACACGAT 58.944 37.500 0.22 0.00 0.00 3.73
3485 3753 5.177511 TCATCTGTTTTTCTGTGACACGATC 59.822 40.000 0.22 0.00 0.00 3.69
3486 3754 4.438148 TCTGTTTTTCTGTGACACGATCA 58.562 39.130 0.22 0.00 33.79 2.92
3487 3755 4.873259 TCTGTTTTTCTGTGACACGATCAA 59.127 37.500 0.22 0.00 39.72 2.57
3488 3756 5.352846 TCTGTTTTTCTGTGACACGATCAAA 59.647 36.000 0.22 2.34 39.72 2.69
3489 3757 5.328691 TGTTTTTCTGTGACACGATCAAAC 58.671 37.500 17.37 17.37 39.72 2.93
3490 3758 5.106515 TGTTTTTCTGTGACACGATCAAACA 60.107 36.000 19.91 19.91 39.72 2.83
3491 3759 5.553290 TTTTCTGTGACACGATCAAACAA 57.447 34.783 0.22 0.00 39.72 2.83
3492 3760 4.530094 TTCTGTGACACGATCAAACAAC 57.470 40.909 0.22 0.00 39.72 3.32
3493 3761 3.526534 TCTGTGACACGATCAAACAACA 58.473 40.909 0.22 0.00 39.72 3.33
3494 3762 4.126437 TCTGTGACACGATCAAACAACAT 58.874 39.130 0.22 0.00 39.72 2.71
3495 3763 5.293560 TCTGTGACACGATCAAACAACATA 58.706 37.500 0.22 0.00 39.72 2.29
3496 3764 5.931724 TCTGTGACACGATCAAACAACATAT 59.068 36.000 0.22 0.00 39.72 1.78
3497 3765 6.426633 TCTGTGACACGATCAAACAACATATT 59.573 34.615 0.22 0.00 39.72 1.28
3498 3766 6.598525 TGTGACACGATCAAACAACATATTC 58.401 36.000 0.22 0.00 39.72 1.75
3499 3767 6.203723 TGTGACACGATCAAACAACATATTCA 59.796 34.615 0.22 0.00 39.72 2.57
3500 3768 6.738200 GTGACACGATCAAACAACATATTCAG 59.262 38.462 0.00 0.00 39.72 3.02
3501 3769 6.128309 TGACACGATCAAACAACATATTCAGG 60.128 38.462 0.00 0.00 33.02 3.86
3502 3770 5.937540 ACACGATCAAACAACATATTCAGGA 59.062 36.000 0.00 0.00 0.00 3.86
3503 3771 6.599244 ACACGATCAAACAACATATTCAGGAT 59.401 34.615 0.00 0.00 0.00 3.24
3504 3772 7.121168 ACACGATCAAACAACATATTCAGGATT 59.879 33.333 0.00 0.00 0.00 3.01
3505 3773 7.430211 CACGATCAAACAACATATTCAGGATTG 59.570 37.037 0.00 0.00 0.00 2.67
3506 3774 7.336679 ACGATCAAACAACATATTCAGGATTGA 59.663 33.333 0.00 0.00 0.00 2.57
3507 3775 8.183536 CGATCAAACAACATATTCAGGATTGAA 58.816 33.333 0.00 0.00 46.67 2.69
3519 3787 6.593268 TTCAGGATTGAATCATTTGCAGAA 57.407 33.333 7.56 0.00 38.37 3.02
3520 3788 6.593268 TCAGGATTGAATCATTTGCAGAAA 57.407 33.333 7.56 0.00 0.00 2.52
3521 3789 6.392354 TCAGGATTGAATCATTTGCAGAAAC 58.608 36.000 7.56 0.00 0.00 2.78
3522 3790 6.209986 TCAGGATTGAATCATTTGCAGAAACT 59.790 34.615 7.56 0.00 0.00 2.66
3523 3791 6.530534 CAGGATTGAATCATTTGCAGAAACTC 59.469 38.462 7.56 0.00 0.00 3.01
3524 3792 6.209986 AGGATTGAATCATTTGCAGAAACTCA 59.790 34.615 7.56 0.00 0.00 3.41
3525 3793 6.869913 GGATTGAATCATTTGCAGAAACTCAA 59.130 34.615 7.56 0.00 0.00 3.02
3526 3794 7.063074 GGATTGAATCATTTGCAGAAACTCAAG 59.937 37.037 7.56 0.00 0.00 3.02
3527 3795 5.224888 TGAATCATTTGCAGAAACTCAAGC 58.775 37.500 0.00 0.00 0.00 4.01
3528 3796 4.859304 ATCATTTGCAGAAACTCAAGCA 57.141 36.364 0.00 0.00 34.79 3.91
3529 3797 4.233123 TCATTTGCAGAAACTCAAGCAG 57.767 40.909 0.00 0.00 38.35 4.24
3530 3798 2.497107 TTTGCAGAAACTCAAGCAGC 57.503 45.000 0.00 0.00 38.35 5.25
3531 3799 0.670162 TTGCAGAAACTCAAGCAGCC 59.330 50.000 0.00 0.00 38.35 4.85
3532 3800 0.466007 TGCAGAAACTCAAGCAGCCA 60.466 50.000 0.00 0.00 32.48 4.75
3533 3801 0.039708 GCAGAAACTCAAGCAGCCAC 60.040 55.000 0.00 0.00 0.00 5.01
3534 3802 1.602311 CAGAAACTCAAGCAGCCACT 58.398 50.000 0.00 0.00 0.00 4.00
3535 3803 1.952296 CAGAAACTCAAGCAGCCACTT 59.048 47.619 0.00 0.00 0.00 3.16
3536 3804 2.031333 CAGAAACTCAAGCAGCCACTTC 60.031 50.000 0.00 0.00 0.00 3.01
3537 3805 1.268079 GAAACTCAAGCAGCCACTTCC 59.732 52.381 0.00 0.00 0.00 3.46
3538 3806 0.183492 AACTCAAGCAGCCACTTCCA 59.817 50.000 0.00 0.00 0.00 3.53
3539 3807 0.536006 ACTCAAGCAGCCACTTCCAC 60.536 55.000 0.00 0.00 0.00 4.02
3540 3808 1.228245 TCAAGCAGCCACTTCCACC 60.228 57.895 0.00 0.00 0.00 4.61
3541 3809 1.228367 CAAGCAGCCACTTCCACCT 60.228 57.895 0.00 0.00 0.00 4.00
3542 3810 0.036732 CAAGCAGCCACTTCCACCTA 59.963 55.000 0.00 0.00 0.00 3.08
3543 3811 0.995024 AAGCAGCCACTTCCACCTAT 59.005 50.000 0.00 0.00 0.00 2.57
3544 3812 0.543749 AGCAGCCACTTCCACCTATC 59.456 55.000 0.00 0.00 0.00 2.08
3545 3813 0.464554 GCAGCCACTTCCACCTATCC 60.465 60.000 0.00 0.00 0.00 2.59
3546 3814 1.207791 CAGCCACTTCCACCTATCCT 58.792 55.000 0.00 0.00 0.00 3.24
3547 3815 2.398588 CAGCCACTTCCACCTATCCTA 58.601 52.381 0.00 0.00 0.00 2.94
3548 3816 2.366916 CAGCCACTTCCACCTATCCTAG 59.633 54.545 0.00 0.00 0.00 3.02
3549 3817 2.022918 AGCCACTTCCACCTATCCTAGT 60.023 50.000 0.00 0.00 0.00 2.57
3550 3818 3.206866 AGCCACTTCCACCTATCCTAGTA 59.793 47.826 0.00 0.00 0.00 1.82
3551 3819 4.140663 AGCCACTTCCACCTATCCTAGTAT 60.141 45.833 0.00 0.00 0.00 2.12
3552 3820 4.021016 GCCACTTCCACCTATCCTAGTATG 60.021 50.000 0.00 0.00 0.00 2.39
3553 3821 5.148502 CCACTTCCACCTATCCTAGTATGT 58.851 45.833 0.00 0.00 0.00 2.29
3554 3822 5.602978 CCACTTCCACCTATCCTAGTATGTT 59.397 44.000 0.00 0.00 0.00 2.71
3555 3823 6.099845 CCACTTCCACCTATCCTAGTATGTTT 59.900 42.308 0.00 0.00 0.00 2.83
3556 3824 7.365652 CCACTTCCACCTATCCTAGTATGTTTT 60.366 40.741 0.00 0.00 0.00 2.43
3557 3825 8.047310 CACTTCCACCTATCCTAGTATGTTTTT 58.953 37.037 0.00 0.00 0.00 1.94
3584 3852 7.532682 TTTTCTTGTGTTTTTACAATCCTGC 57.467 32.000 0.00 0.00 39.60 4.85
3585 3853 5.843673 TCTTGTGTTTTTACAATCCTGCA 57.156 34.783 0.00 0.00 39.60 4.41
3586 3854 5.830912 TCTTGTGTTTTTACAATCCTGCAG 58.169 37.500 6.78 6.78 39.60 4.41
3587 3855 5.592282 TCTTGTGTTTTTACAATCCTGCAGA 59.408 36.000 17.39 1.21 39.60 4.26
3588 3856 6.265196 TCTTGTGTTTTTACAATCCTGCAGAT 59.735 34.615 17.39 3.92 39.60 2.90
3589 3857 6.403866 TGTGTTTTTACAATCCTGCAGATT 57.596 33.333 17.39 10.27 46.54 2.40
3590 3858 7.517614 TGTGTTTTTACAATCCTGCAGATTA 57.482 32.000 17.39 0.00 43.63 1.75
3591 3859 7.946207 TGTGTTTTTACAATCCTGCAGATTAA 58.054 30.769 17.39 2.00 43.63 1.40
3592 3860 8.417106 TGTGTTTTTACAATCCTGCAGATTAAA 58.583 29.630 17.39 8.00 43.63 1.52
3593 3861 8.915654 GTGTTTTTACAATCCTGCAGATTAAAG 58.084 33.333 17.39 2.25 43.63 1.85
3594 3862 8.855110 TGTTTTTACAATCCTGCAGATTAAAGA 58.145 29.630 17.39 2.45 43.63 2.52
3595 3863 9.346725 GTTTTTACAATCCTGCAGATTAAAGAG 57.653 33.333 17.39 3.90 43.63 2.85
3596 3864 6.683974 TTACAATCCTGCAGATTAAAGAGC 57.316 37.500 17.39 0.00 43.63 4.09
3597 3865 3.950395 ACAATCCTGCAGATTAAAGAGCC 59.050 43.478 17.39 0.00 43.63 4.70
3598 3866 2.717639 TCCTGCAGATTAAAGAGCCC 57.282 50.000 17.39 0.00 0.00 5.19
3599 3867 1.212935 TCCTGCAGATTAAAGAGCCCC 59.787 52.381 17.39 0.00 0.00 5.80
3600 3868 1.213926 CCTGCAGATTAAAGAGCCCCT 59.786 52.381 17.39 0.00 0.00 4.79
3601 3869 2.439507 CCTGCAGATTAAAGAGCCCCTA 59.560 50.000 17.39 0.00 0.00 3.53
3602 3870 3.495806 CCTGCAGATTAAAGAGCCCCTAG 60.496 52.174 17.39 0.00 0.00 3.02
3603 3871 3.384168 TGCAGATTAAAGAGCCCCTAGA 58.616 45.455 0.00 0.00 0.00 2.43
3604 3872 3.389329 TGCAGATTAAAGAGCCCCTAGAG 59.611 47.826 0.00 0.00 0.00 2.43
3605 3873 3.805457 GCAGATTAAAGAGCCCCTAGAGC 60.805 52.174 0.00 0.00 0.00 4.09
3606 3874 3.389329 CAGATTAAAGAGCCCCTAGAGCA 59.611 47.826 7.37 0.00 0.00 4.26
3607 3875 4.041444 CAGATTAAAGAGCCCCTAGAGCAT 59.959 45.833 7.37 0.00 0.00 3.79
3608 3876 5.247110 CAGATTAAAGAGCCCCTAGAGCATA 59.753 44.000 7.37 0.00 0.00 3.14
3609 3877 6.028780 AGATTAAAGAGCCCCTAGAGCATAT 58.971 40.000 7.37 0.00 0.00 1.78
3610 3878 6.503570 AGATTAAAGAGCCCCTAGAGCATATT 59.496 38.462 7.37 2.29 0.00 1.28
3611 3879 4.632327 AAAGAGCCCCTAGAGCATATTC 57.368 45.455 7.37 0.00 0.00 1.75
3612 3880 3.266477 AGAGCCCCTAGAGCATATTCA 57.734 47.619 7.37 0.00 0.00 2.57
3613 3881 3.591789 AGAGCCCCTAGAGCATATTCAA 58.408 45.455 7.37 0.00 0.00 2.69
3614 3882 4.174383 AGAGCCCCTAGAGCATATTCAAT 58.826 43.478 7.37 0.00 0.00 2.57
3615 3883 5.345418 AGAGCCCCTAGAGCATATTCAATA 58.655 41.667 7.37 0.00 0.00 1.90
3616 3884 5.424895 AGAGCCCCTAGAGCATATTCAATAG 59.575 44.000 7.37 0.00 0.00 1.73
3617 3885 5.345418 AGCCCCTAGAGCATATTCAATAGA 58.655 41.667 7.37 0.00 0.00 1.98
3618 3886 5.188751 AGCCCCTAGAGCATATTCAATAGAC 59.811 44.000 7.37 0.00 0.00 2.59
3619 3887 5.655488 CCCCTAGAGCATATTCAATAGACG 58.345 45.833 0.00 0.00 0.00 4.18
3620 3888 5.394663 CCCCTAGAGCATATTCAATAGACGG 60.395 48.000 0.00 0.00 0.00 4.79
3621 3889 5.186021 CCCTAGAGCATATTCAATAGACGGT 59.814 44.000 0.00 0.00 0.00 4.83
3622 3890 6.326375 CCTAGAGCATATTCAATAGACGGTC 58.674 44.000 0.00 0.00 0.00 4.79
3623 3891 5.140747 AGAGCATATTCAATAGACGGTCC 57.859 43.478 4.14 0.00 0.00 4.46
3624 3892 4.588951 AGAGCATATTCAATAGACGGTCCA 59.411 41.667 4.14 0.00 0.00 4.02
3625 3893 5.247110 AGAGCATATTCAATAGACGGTCCAT 59.753 40.000 4.14 0.00 0.00 3.41
3626 3894 6.437477 AGAGCATATTCAATAGACGGTCCATA 59.563 38.462 4.14 0.00 0.00 2.74
3627 3895 7.124901 AGAGCATATTCAATAGACGGTCCATAT 59.875 37.037 4.14 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 3.127352 GACTAGCGCCAGACCGAGG 62.127 68.421 10.59 0.00 0.00 4.63
107 108 0.676736 GGATCTGATCACCGAGGACC 59.323 60.000 18.64 0.00 0.00 4.46
233 235 5.643777 CCAGATGAAAACAAACTAGGATCGT 59.356 40.000 0.00 0.00 0.00 3.73
239 241 5.563842 GCGATCCAGATGAAAACAAACTAG 58.436 41.667 0.00 0.00 0.00 2.57
249 251 0.249120 ACCAACGCGATCCAGATGAA 59.751 50.000 15.93 0.00 0.00 2.57
293 295 1.861542 TACACGTACGGGGACAACGG 61.862 60.000 23.48 1.02 42.00 4.44
299 301 1.597797 CCAGCTTACACGTACGGGGA 61.598 60.000 23.48 11.49 0.00 4.81
303 305 0.734942 CACCCCAGCTTACACGTACG 60.735 60.000 15.01 15.01 0.00 3.67
310 312 3.906720 TTATCTCACACCCCAGCTTAC 57.093 47.619 0.00 0.00 0.00 2.34
311 313 4.324254 CCTTTTATCTCACACCCCAGCTTA 60.324 45.833 0.00 0.00 0.00 3.09
315 317 3.264450 AGACCTTTTATCTCACACCCCAG 59.736 47.826 0.00 0.00 0.00 4.45
316 318 3.256704 AGACCTTTTATCTCACACCCCA 58.743 45.455 0.00 0.00 0.00 4.96
322 324 5.470098 TGCACAAGAAGACCTTTTATCTCAC 59.530 40.000 0.00 0.00 31.42 3.51
325 327 7.530426 AATTGCACAAGAAGACCTTTTATCT 57.470 32.000 0.00 0.00 31.42 1.98
335 337 5.809001 ACTGGATCTAATTGCACAAGAAGA 58.191 37.500 0.00 1.35 0.00 2.87
336 338 5.879223 AGACTGGATCTAATTGCACAAGAAG 59.121 40.000 0.00 0.00 35.15 2.85
413 445 2.754552 GCTTCTATTGCCACAACATCCA 59.245 45.455 0.00 0.00 0.00 3.41
433 465 5.751028 GTCAGGATCTGTAGACATTAACTGC 59.249 44.000 0.00 0.00 32.61 4.40
457 489 2.577449 AACAAAGGCGAACAAACAGG 57.423 45.000 0.00 0.00 0.00 4.00
466 498 3.316588 TGCATCTAAACAAACAAAGGCGA 59.683 39.130 0.00 0.00 0.00 5.54
504 541 1.266446 TCAATTGGTGCGTGTCATGTG 59.734 47.619 5.42 0.00 0.00 3.21
509 546 1.408422 GCTTTCAATTGGTGCGTGTC 58.592 50.000 5.42 0.00 0.00 3.67
513 550 1.003262 CACGGCTTTCAATTGGTGCG 61.003 55.000 5.42 6.96 0.00 5.34
558 596 2.450609 ACCCACACTACGACATCAAC 57.549 50.000 0.00 0.00 0.00 3.18
583 621 8.296713 TCATTAACAGAAACAACTTAATGAGGC 58.703 33.333 7.33 0.00 36.83 4.70
678 716 9.122779 CAAATGGGATAATAAAAACATGGCAAT 57.877 29.630 0.00 0.00 0.00 3.56
679 717 8.324306 TCAAATGGGATAATAAAAACATGGCAA 58.676 29.630 0.00 0.00 0.00 4.52
681 719 8.907222 ATCAAATGGGATAATAAAAACATGGC 57.093 30.769 0.00 0.00 0.00 4.40
693 731 8.474025 ACGCTTGAAAATAATCAAATGGGATAA 58.526 29.630 0.00 0.00 38.75 1.75
706 744 6.228258 ACCTAGTTGAGACGCTTGAAAATAA 58.772 36.000 0.00 0.00 0.00 1.40
727 765 1.985473 TGCATGCTGACAGAAAACCT 58.015 45.000 20.33 0.00 0.00 3.50
728 766 2.798976 TTGCATGCTGACAGAAAACC 57.201 45.000 20.33 0.00 0.00 3.27
729 767 5.051891 AGTATTGCATGCTGACAGAAAAC 57.948 39.130 20.33 4.37 0.00 2.43
730 768 5.939883 AGTAGTATTGCATGCTGACAGAAAA 59.060 36.000 20.33 1.92 0.00 2.29
971 1147 4.128643 CCTGCAACAACAATCAAACCAAT 58.871 39.130 0.00 0.00 0.00 3.16
1426 1602 1.071385 AGCAGTGTTTCCTCTCCACAG 59.929 52.381 0.00 0.00 0.00 3.66
1482 1658 5.938438 AAGCACAACAAAAACAACAACAT 57.062 30.435 0.00 0.00 0.00 2.71
1484 1660 8.720909 AAAATAAGCACAACAAAAACAACAAC 57.279 26.923 0.00 0.00 0.00 3.32
1493 1669 8.885494 AAGCTAATGAAAATAAGCACAACAAA 57.115 26.923 0.00 0.00 37.44 2.83
1499 1681 7.490402 AGCATGAAAGCTAATGAAAATAAGCAC 59.510 33.333 0.00 0.00 44.50 4.40
1524 1706 6.057533 ACATACACCATTACCATCATGTGAG 58.942 40.000 0.00 0.00 0.00 3.51
1686 1870 5.869753 AAGTGCATCAGCTGTAAAACTAG 57.130 39.130 14.67 0.00 42.74 2.57
1687 1871 6.371548 CCTAAAGTGCATCAGCTGTAAAACTA 59.628 38.462 14.67 0.00 42.74 2.24
1751 1938 9.807649 AGCTGTATGAAATGAAATATTTGAACC 57.192 29.630 5.17 0.00 0.00 3.62
2068 2261 1.895131 ACATCAACCAGGCCATTGAAC 59.105 47.619 17.81 0.00 38.29 3.18
2197 2390 2.166254 GAGGAGAACTGGCTTCAGAGAG 59.834 54.545 0.00 0.00 40.86 3.20
2269 2463 6.680378 GCACCACACAAACTAGAGAAATTTGT 60.680 38.462 0.00 0.00 45.13 2.83
2291 2485 0.953727 TGCAAGAATGTCAGTGGCAC 59.046 50.000 10.29 10.29 0.00 5.01
2292 2486 1.689984 TTGCAAGAATGTCAGTGGCA 58.310 45.000 0.00 0.00 0.00 4.92
2304 2499 2.426738 CACAGGTGAAAGGTTTGCAAGA 59.573 45.455 0.00 0.00 0.00 3.02
2325 2520 1.269257 GGCAAAGAAGTTGTCCTGCAC 60.269 52.381 8.67 0.00 39.63 4.57
2435 2630 2.009681 TGTACTTGACAGCCTCTCCA 57.990 50.000 0.00 0.00 32.86 3.86
2629 2824 3.000041 TGTTCGTCATCATTTCTTCCCG 59.000 45.455 0.00 0.00 0.00 5.14
2847 3042 1.869754 CGATTCAGGGCACATACTCGG 60.870 57.143 0.00 0.00 0.00 4.63
2902 3097 6.814146 GGACCATAATAATCTCAGTCGGATTC 59.186 42.308 0.00 0.00 35.40 2.52
2936 3131 7.388776 CAGAAATAGAATGTCAAGACCAACAGA 59.611 37.037 0.00 0.00 0.00 3.41
2982 3177 2.299326 AGGGCAAAGCAACAGATTCT 57.701 45.000 0.00 0.00 0.00 2.40
2984 3179 3.700538 TCATAGGGCAAAGCAACAGATT 58.299 40.909 0.00 0.00 0.00 2.40
2985 3180 3.370840 TCATAGGGCAAAGCAACAGAT 57.629 42.857 0.00 0.00 0.00 2.90
3014 3233 4.091509 GCATCTCACGAACAAAACGAGTAT 59.908 41.667 0.00 0.00 34.70 2.12
3019 3238 1.531149 AGGCATCTCACGAACAAAACG 59.469 47.619 0.00 0.00 0.00 3.60
3021 3240 7.552687 AGAATAATAGGCATCTCACGAACAAAA 59.447 33.333 0.00 0.00 0.00 2.44
3027 3246 4.519350 ACGAGAATAATAGGCATCTCACGA 59.481 41.667 0.00 0.00 38.55 4.35
3028 3247 4.799678 ACGAGAATAATAGGCATCTCACG 58.200 43.478 0.00 0.00 38.55 4.35
3036 3255 8.334263 AGGTAGTACTAACGAGAATAATAGGC 57.666 38.462 12.26 0.00 0.00 3.93
3043 3262 7.700022 AAACTGAGGTAGTACTAACGAGAAT 57.300 36.000 20.68 10.27 39.18 2.40
3044 3263 7.229306 TCAAAACTGAGGTAGTACTAACGAGAA 59.771 37.037 20.68 6.06 39.18 2.87
3046 3265 6.906659 TCAAAACTGAGGTAGTACTAACGAG 58.093 40.000 12.26 13.85 39.18 4.18
3048 3267 7.935338 TTTCAAAACTGAGGTAGTACTAACG 57.065 36.000 12.26 1.24 39.18 3.18
3049 3268 9.269453 ACATTTCAAAACTGAGGTAGTACTAAC 57.731 33.333 10.12 10.12 39.18 2.34
3053 3272 8.709646 CACTACATTTCAAAACTGAGGTAGTAC 58.290 37.037 0.00 0.00 39.18 2.73
3054 3273 7.386848 GCACTACATTTCAAAACTGAGGTAGTA 59.613 37.037 0.00 0.00 39.18 1.82
3058 3277 4.887071 TGCACTACATTTCAAAACTGAGGT 59.113 37.500 0.00 0.00 0.00 3.85
3067 3286 7.503521 TTGACTTGTATGCACTACATTTCAA 57.496 32.000 17.53 17.53 40.02 2.69
3068 3287 7.359595 GTTTGACTTGTATGCACTACATTTCA 58.640 34.615 9.00 10.63 40.02 2.69
3079 3298 1.804151 TGCGAGGTTTGACTTGTATGC 59.196 47.619 0.00 0.00 0.00 3.14
3080 3299 4.024048 AGTTTGCGAGGTTTGACTTGTATG 60.024 41.667 0.00 0.00 0.00 2.39
3081 3300 4.134563 AGTTTGCGAGGTTTGACTTGTAT 58.865 39.130 0.00 0.00 0.00 2.29
3082 3301 3.537580 AGTTTGCGAGGTTTGACTTGTA 58.462 40.909 0.00 0.00 0.00 2.41
3083 3302 2.365582 AGTTTGCGAGGTTTGACTTGT 58.634 42.857 0.00 0.00 0.00 3.16
3084 3303 3.420839 AAGTTTGCGAGGTTTGACTTG 57.579 42.857 0.00 0.00 0.00 3.16
3085 3304 3.442273 TCAAAGTTTGCGAGGTTTGACTT 59.558 39.130 10.90 0.00 34.72 3.01
3088 3307 3.629855 TGATCAAAGTTTGCGAGGTTTGA 59.370 39.130 10.90 12.72 41.74 2.69
3094 3313 6.349426 CACAAATTTGATCAAAGTTTGCGAG 58.651 36.000 30.53 22.72 36.60 5.03
3097 3316 6.479660 TCTCCACAAATTTGATCAAAGTTTGC 59.520 34.615 30.53 0.00 36.60 3.68
3181 3446 5.642919 ACTCATGTGTTGCAAATGTTTTTGT 59.357 32.000 0.00 0.00 43.43 2.83
3182 3447 6.109320 ACTCATGTGTTGCAAATGTTTTTG 57.891 33.333 0.00 0.00 44.18 2.44
3188 3453 5.048504 AGGTAGAACTCATGTGTTGCAAATG 60.049 40.000 17.34 1.39 30.82 2.32
3190 3455 4.460263 AGGTAGAACTCATGTGTTGCAAA 58.540 39.130 17.34 0.00 0.00 3.68
3191 3456 4.085357 AGGTAGAACTCATGTGTTGCAA 57.915 40.909 17.34 0.00 0.00 4.08
3192 3457 3.769739 AGGTAGAACTCATGTGTTGCA 57.230 42.857 17.34 2.73 0.00 4.08
3193 3458 4.275936 ACAAAGGTAGAACTCATGTGTTGC 59.724 41.667 17.34 9.27 0.00 4.17
3194 3459 7.672983 ATACAAAGGTAGAACTCATGTGTTG 57.327 36.000 17.34 4.43 31.88 3.33
3195 3460 8.157476 AGAATACAAAGGTAGAACTCATGTGTT 58.843 33.333 12.74 12.74 31.88 3.32
3196 3461 7.680730 AGAATACAAAGGTAGAACTCATGTGT 58.319 34.615 0.00 0.00 31.88 3.72
3197 3462 8.553459 AAGAATACAAAGGTAGAACTCATGTG 57.447 34.615 0.00 0.00 31.88 3.21
3198 3463 9.877178 CTAAGAATACAAAGGTAGAACTCATGT 57.123 33.333 0.00 0.00 31.88 3.21
3199 3464 8.821894 GCTAAGAATACAAAGGTAGAACTCATG 58.178 37.037 0.00 0.00 31.88 3.07
3200 3465 8.763601 AGCTAAGAATACAAAGGTAGAACTCAT 58.236 33.333 0.00 0.00 31.88 2.90
3201 3466 8.135382 AGCTAAGAATACAAAGGTAGAACTCA 57.865 34.615 0.00 0.00 31.88 3.41
3202 3467 9.738832 CTAGCTAAGAATACAAAGGTAGAACTC 57.261 37.037 0.00 0.00 40.71 3.01
3203 3468 8.198778 GCTAGCTAAGAATACAAAGGTAGAACT 58.801 37.037 7.70 0.00 40.71 3.01
3204 3469 7.980099 TGCTAGCTAAGAATACAAAGGTAGAAC 59.020 37.037 17.23 0.00 40.71 3.01
3205 3470 8.074613 TGCTAGCTAAGAATACAAAGGTAGAA 57.925 34.615 17.23 0.00 40.71 2.10
3206 3471 7.560262 TCTGCTAGCTAAGAATACAAAGGTAGA 59.440 37.037 17.23 0.75 40.71 2.59
3207 3472 7.717568 TCTGCTAGCTAAGAATACAAAGGTAG 58.282 38.462 17.23 0.00 41.02 3.18
3208 3473 7.655521 TCTGCTAGCTAAGAATACAAAGGTA 57.344 36.000 17.23 0.00 0.00 3.08
3209 3474 6.546428 TCTGCTAGCTAAGAATACAAAGGT 57.454 37.500 17.23 0.00 0.00 3.50
3210 3475 9.717942 ATAATCTGCTAGCTAAGAATACAAAGG 57.282 33.333 17.23 0.00 0.00 3.11
3229 3494 8.248945 AGAGAAAACCATCAAAAGCATAATCTG 58.751 33.333 0.00 0.00 0.00 2.90
3230 3495 8.358582 AGAGAAAACCATCAAAAGCATAATCT 57.641 30.769 0.00 0.00 0.00 2.40
3231 3496 8.465201 AGAGAGAAAACCATCAAAAGCATAATC 58.535 33.333 0.00 0.00 0.00 1.75
3232 3497 8.358582 AGAGAGAAAACCATCAAAAGCATAAT 57.641 30.769 0.00 0.00 0.00 1.28
3233 3498 7.765695 AGAGAGAAAACCATCAAAAGCATAA 57.234 32.000 0.00 0.00 0.00 1.90
3244 3509 6.490381 GGTTAAACAGGAAGAGAGAAAACCAT 59.510 38.462 0.00 0.00 34.25 3.55
3266 3531 9.314321 CGTAAGAGATATTCAAATGTACAGGTT 57.686 33.333 0.33 0.00 43.02 3.50
3267 3532 8.692710 TCGTAAGAGATATTCAAATGTACAGGT 58.307 33.333 0.33 0.00 45.01 4.00
3290 3555 2.891112 TGGTACACGTCTTGTTTTCGT 58.109 42.857 0.00 0.00 39.91 3.85
3324 3592 7.010738 GGTCATTTTCAAATCACTTATGGCATG 59.989 37.037 10.98 0.00 0.00 4.06
3326 3594 6.397272 GGTCATTTTCAAATCACTTATGGCA 58.603 36.000 0.00 0.00 0.00 4.92
3359 3627 1.282447 TGGCCCTAAATTCGGTGCTAA 59.718 47.619 0.00 0.00 0.00 3.09
3360 3628 0.913205 TGGCCCTAAATTCGGTGCTA 59.087 50.000 0.00 0.00 0.00 3.49
3361 3629 0.258774 ATGGCCCTAAATTCGGTGCT 59.741 50.000 0.00 0.00 0.00 4.40
3362 3630 1.880027 CTATGGCCCTAAATTCGGTGC 59.120 52.381 0.00 0.00 0.00 5.01
3363 3631 2.504367 CCTATGGCCCTAAATTCGGTG 58.496 52.381 0.00 0.00 0.00 4.94
3364 3632 1.423921 CCCTATGGCCCTAAATTCGGT 59.576 52.381 0.00 0.00 0.00 4.69
3365 3633 1.423921 ACCCTATGGCCCTAAATTCGG 59.576 52.381 0.00 0.00 33.59 4.30
3366 3634 2.951229 ACCCTATGGCCCTAAATTCG 57.049 50.000 0.00 0.00 33.59 3.34
3367 3635 4.542697 TCAAACCCTATGGCCCTAAATTC 58.457 43.478 0.00 0.00 33.59 2.17
3368 3636 4.618378 TCAAACCCTATGGCCCTAAATT 57.382 40.909 0.00 0.00 33.59 1.82
3369 3637 4.618378 TTCAAACCCTATGGCCCTAAAT 57.382 40.909 0.00 0.00 33.59 1.40
3370 3638 4.405756 TTTCAAACCCTATGGCCCTAAA 57.594 40.909 0.00 0.00 33.59 1.85
3371 3639 4.231890 AGATTTCAAACCCTATGGCCCTAA 59.768 41.667 0.00 0.00 33.59 2.69
3372 3640 3.791545 AGATTTCAAACCCTATGGCCCTA 59.208 43.478 0.00 0.00 33.59 3.53
3373 3641 2.587307 AGATTTCAAACCCTATGGCCCT 59.413 45.455 0.00 0.00 33.59 5.19
3374 3642 3.032265 AGATTTCAAACCCTATGGCCC 57.968 47.619 0.00 0.00 33.59 5.80
3375 3643 4.524328 CCATAGATTTCAAACCCTATGGCC 59.476 45.833 19.65 0.00 46.45 5.36
3376 3644 5.712152 CCATAGATTTCAAACCCTATGGC 57.288 43.478 19.65 0.00 46.45 4.40
3378 3646 8.980481 AACTACCATAGATTTCAAACCCTATG 57.020 34.615 11.69 11.69 38.60 2.23
3379 3647 9.408648 CAAACTACCATAGATTTCAAACCCTAT 57.591 33.333 0.00 0.00 0.00 2.57
3380 3648 8.607713 TCAAACTACCATAGATTTCAAACCCTA 58.392 33.333 0.00 0.00 0.00 3.53
3381 3649 7.466804 TCAAACTACCATAGATTTCAAACCCT 58.533 34.615 0.00 0.00 0.00 4.34
3382 3650 7.696992 TCAAACTACCATAGATTTCAAACCC 57.303 36.000 0.00 0.00 0.00 4.11
3383 3651 9.788960 GAATCAAACTACCATAGATTTCAAACC 57.211 33.333 0.00 0.00 0.00 3.27
3384 3652 9.788960 GGAATCAAACTACCATAGATTTCAAAC 57.211 33.333 0.00 0.00 0.00 2.93
3385 3653 8.966868 GGGAATCAAACTACCATAGATTTCAAA 58.033 33.333 0.00 0.00 0.00 2.69
3386 3654 8.112822 TGGGAATCAAACTACCATAGATTTCAA 58.887 33.333 0.00 0.00 0.00 2.69
3387 3655 7.638444 TGGGAATCAAACTACCATAGATTTCA 58.362 34.615 0.00 0.00 0.00 2.69
3388 3656 7.229506 CCTGGGAATCAAACTACCATAGATTTC 59.770 40.741 0.00 0.00 0.00 2.17
3389 3657 7.062957 CCTGGGAATCAAACTACCATAGATTT 58.937 38.462 0.00 0.00 0.00 2.17
3390 3658 6.389869 TCCTGGGAATCAAACTACCATAGATT 59.610 38.462 0.00 0.00 0.00 2.40
3391 3659 5.911178 TCCTGGGAATCAAACTACCATAGAT 59.089 40.000 0.00 0.00 0.00 1.98
3392 3660 5.285401 TCCTGGGAATCAAACTACCATAGA 58.715 41.667 0.00 0.00 0.00 1.98
3393 3661 5.630415 TCCTGGGAATCAAACTACCATAG 57.370 43.478 0.00 0.00 0.00 2.23
3394 3662 6.159575 TCAATCCTGGGAATCAAACTACCATA 59.840 38.462 0.00 0.00 0.00 2.74
3395 3663 5.044179 TCAATCCTGGGAATCAAACTACCAT 60.044 40.000 0.00 0.00 0.00 3.55
3396 3664 4.290985 TCAATCCTGGGAATCAAACTACCA 59.709 41.667 0.00 0.00 0.00 3.25
3397 3665 4.855340 TCAATCCTGGGAATCAAACTACC 58.145 43.478 0.00 0.00 0.00 3.18
3398 3666 7.032377 GATTCAATCCTGGGAATCAAACTAC 57.968 40.000 15.19 0.00 45.47 2.73
3422 3690 5.192927 TGCCTTGTGAACAAATCCTATAGG 58.807 41.667 13.07 13.07 35.15 2.57
3423 3691 6.543465 TGATGCCTTGTGAACAAATCCTATAG 59.457 38.462 0.00 0.00 35.15 1.31
3424 3692 6.422333 TGATGCCTTGTGAACAAATCCTATA 58.578 36.000 0.00 0.00 35.15 1.31
3425 3693 5.263599 TGATGCCTTGTGAACAAATCCTAT 58.736 37.500 0.00 0.00 35.15 2.57
3426 3694 4.661222 TGATGCCTTGTGAACAAATCCTA 58.339 39.130 0.00 0.00 35.15 2.94
3427 3695 3.499338 TGATGCCTTGTGAACAAATCCT 58.501 40.909 0.00 0.00 35.15 3.24
3428 3696 3.940209 TGATGCCTTGTGAACAAATCC 57.060 42.857 0.00 0.00 35.15 3.01
3429 3697 5.320549 AGATGATGCCTTGTGAACAAATC 57.679 39.130 0.00 0.00 35.15 2.17
3430 3698 5.244402 TCAAGATGATGCCTTGTGAACAAAT 59.756 36.000 0.00 0.00 41.18 2.32
3431 3699 4.583907 TCAAGATGATGCCTTGTGAACAAA 59.416 37.500 0.00 0.00 41.18 2.83
3432 3700 4.143543 TCAAGATGATGCCTTGTGAACAA 58.856 39.130 0.00 0.00 41.18 2.83
3433 3701 3.753815 TCAAGATGATGCCTTGTGAACA 58.246 40.909 0.00 0.00 41.18 3.18
3434 3702 4.771590 TTCAAGATGATGCCTTGTGAAC 57.228 40.909 0.00 0.00 41.18 3.18
3435 3703 5.787953 TTTTCAAGATGATGCCTTGTGAA 57.212 34.783 0.00 0.00 41.18 3.18
3436 3704 5.787953 TTTTTCAAGATGATGCCTTGTGA 57.212 34.783 0.00 0.00 41.18 3.58
3456 3724 7.220683 CGTGTCACAGAAAAACAGATGATTTTT 59.779 33.333 3.42 4.59 40.94 1.94
3457 3725 6.692681 CGTGTCACAGAAAAACAGATGATTTT 59.307 34.615 3.42 1.01 33.60 1.82
3458 3726 6.038161 TCGTGTCACAGAAAAACAGATGATTT 59.962 34.615 3.42 0.00 0.00 2.17
3459 3727 5.527214 TCGTGTCACAGAAAAACAGATGATT 59.473 36.000 3.42 0.00 0.00 2.57
3460 3728 5.056480 TCGTGTCACAGAAAAACAGATGAT 58.944 37.500 3.42 0.00 0.00 2.45
3461 3729 4.438148 TCGTGTCACAGAAAAACAGATGA 58.562 39.130 3.42 0.00 0.00 2.92
3462 3730 4.794248 TCGTGTCACAGAAAAACAGATG 57.206 40.909 3.42 0.00 0.00 2.90
3463 3731 5.056480 TGATCGTGTCACAGAAAAACAGAT 58.944 37.500 3.42 0.00 0.00 2.90
3464 3732 4.438148 TGATCGTGTCACAGAAAAACAGA 58.562 39.130 3.42 0.00 0.00 3.41
3465 3733 4.794248 TGATCGTGTCACAGAAAAACAG 57.206 40.909 3.42 0.00 0.00 3.16
3466 3734 5.106515 TGTTTGATCGTGTCACAGAAAAACA 60.107 36.000 21.43 21.43 36.32 2.83
3467 3735 5.328691 TGTTTGATCGTGTCACAGAAAAAC 58.671 37.500 18.95 18.95 36.32 2.43
3468 3736 5.553290 TGTTTGATCGTGTCACAGAAAAA 57.447 34.783 3.42 4.89 36.32 1.94
3469 3737 5.106515 TGTTGTTTGATCGTGTCACAGAAAA 60.107 36.000 3.42 0.00 36.32 2.29
3470 3738 4.393371 TGTTGTTTGATCGTGTCACAGAAA 59.607 37.500 3.42 0.00 36.32 2.52
3471 3739 3.935828 TGTTGTTTGATCGTGTCACAGAA 59.064 39.130 3.42 0.00 36.32 3.02
3472 3740 3.526534 TGTTGTTTGATCGTGTCACAGA 58.473 40.909 3.42 2.05 36.32 3.41
3473 3741 3.942539 TGTTGTTTGATCGTGTCACAG 57.057 42.857 3.42 0.00 36.32 3.66
3474 3742 6.203723 TGAATATGTTGTTTGATCGTGTCACA 59.796 34.615 3.42 0.00 36.32 3.58
3475 3743 6.598525 TGAATATGTTGTTTGATCGTGTCAC 58.401 36.000 0.00 0.00 36.32 3.67
3476 3744 6.128309 CCTGAATATGTTGTTTGATCGTGTCA 60.128 38.462 0.00 0.00 34.25 3.58
3477 3745 6.092122 TCCTGAATATGTTGTTTGATCGTGTC 59.908 38.462 0.00 0.00 0.00 3.67
3478 3746 5.937540 TCCTGAATATGTTGTTTGATCGTGT 59.062 36.000 0.00 0.00 0.00 4.49
3479 3747 6.421377 TCCTGAATATGTTGTTTGATCGTG 57.579 37.500 0.00 0.00 0.00 4.35
3480 3748 7.336679 TCAATCCTGAATATGTTGTTTGATCGT 59.663 33.333 0.00 0.00 0.00 3.73
3481 3749 7.696755 TCAATCCTGAATATGTTGTTTGATCG 58.303 34.615 0.00 0.00 0.00 3.69
3496 3764 6.593268 TTCTGCAAATGATTCAATCCTGAA 57.407 33.333 0.00 0.00 45.53 3.02
3497 3765 6.209986 AGTTTCTGCAAATGATTCAATCCTGA 59.790 34.615 0.00 0.00 0.00 3.86
3498 3766 6.395629 AGTTTCTGCAAATGATTCAATCCTG 58.604 36.000 0.00 0.00 0.00 3.86
3499 3767 6.209986 TGAGTTTCTGCAAATGATTCAATCCT 59.790 34.615 0.00 0.00 0.00 3.24
3500 3768 6.392354 TGAGTTTCTGCAAATGATTCAATCC 58.608 36.000 0.00 0.00 0.00 3.01
3501 3769 7.411588 GCTTGAGTTTCTGCAAATGATTCAATC 60.412 37.037 0.00 0.00 0.00 2.67
3502 3770 6.367969 GCTTGAGTTTCTGCAAATGATTCAAT 59.632 34.615 0.00 0.00 0.00 2.57
3503 3771 5.693104 GCTTGAGTTTCTGCAAATGATTCAA 59.307 36.000 0.00 0.00 0.00 2.69
3504 3772 5.221283 TGCTTGAGTTTCTGCAAATGATTCA 60.221 36.000 0.00 0.00 32.12 2.57
3505 3773 5.224888 TGCTTGAGTTTCTGCAAATGATTC 58.775 37.500 0.00 0.00 32.12 2.52
3506 3774 5.204409 TGCTTGAGTTTCTGCAAATGATT 57.796 34.783 0.00 0.00 32.12 2.57
3507 3775 4.806330 CTGCTTGAGTTTCTGCAAATGAT 58.194 39.130 0.00 0.00 34.90 2.45
3508 3776 3.551454 GCTGCTTGAGTTTCTGCAAATGA 60.551 43.478 0.00 0.00 34.90 2.57
3509 3777 2.729882 GCTGCTTGAGTTTCTGCAAATG 59.270 45.455 0.00 0.00 34.90 2.32
3510 3778 2.288640 GGCTGCTTGAGTTTCTGCAAAT 60.289 45.455 0.00 0.00 34.90 2.32
3511 3779 1.067516 GGCTGCTTGAGTTTCTGCAAA 59.932 47.619 0.00 0.00 34.90 3.68
3512 3780 0.670162 GGCTGCTTGAGTTTCTGCAA 59.330 50.000 0.00 0.00 34.90 4.08
3513 3781 0.466007 TGGCTGCTTGAGTTTCTGCA 60.466 50.000 0.00 0.00 0.00 4.41
3514 3782 0.039708 GTGGCTGCTTGAGTTTCTGC 60.040 55.000 0.00 0.00 0.00 4.26
3515 3783 1.602311 AGTGGCTGCTTGAGTTTCTG 58.398 50.000 0.00 0.00 0.00 3.02
3516 3784 2.225467 GAAGTGGCTGCTTGAGTTTCT 58.775 47.619 0.00 0.00 0.00 2.52
3517 3785 1.268079 GGAAGTGGCTGCTTGAGTTTC 59.732 52.381 0.00 0.00 0.00 2.78
3518 3786 1.322442 GGAAGTGGCTGCTTGAGTTT 58.678 50.000 0.00 0.00 0.00 2.66
3519 3787 0.183492 TGGAAGTGGCTGCTTGAGTT 59.817 50.000 0.00 0.00 0.00 3.01
3520 3788 0.536006 GTGGAAGTGGCTGCTTGAGT 60.536 55.000 0.00 0.00 0.00 3.41
3521 3789 1.239968 GGTGGAAGTGGCTGCTTGAG 61.240 60.000 0.00 0.00 0.00 3.02
3522 3790 1.228245 GGTGGAAGTGGCTGCTTGA 60.228 57.895 0.00 0.00 0.00 3.02
3523 3791 0.036732 TAGGTGGAAGTGGCTGCTTG 59.963 55.000 0.00 0.00 0.00 4.01
3524 3792 0.995024 ATAGGTGGAAGTGGCTGCTT 59.005 50.000 0.00 0.00 0.00 3.91
3525 3793 0.543749 GATAGGTGGAAGTGGCTGCT 59.456 55.000 0.00 0.00 0.00 4.24
3526 3794 0.464554 GGATAGGTGGAAGTGGCTGC 60.465 60.000 0.00 0.00 0.00 5.25
3527 3795 1.207791 AGGATAGGTGGAAGTGGCTG 58.792 55.000 0.00 0.00 0.00 4.85
3528 3796 2.022918 ACTAGGATAGGTGGAAGTGGCT 60.023 50.000 0.00 0.00 44.97 4.75
3529 3797 2.399580 ACTAGGATAGGTGGAAGTGGC 58.600 52.381 0.00 0.00 44.97 5.01
3530 3798 5.148502 ACATACTAGGATAGGTGGAAGTGG 58.851 45.833 0.00 0.00 44.97 4.00
3531 3799 6.732896 AACATACTAGGATAGGTGGAAGTG 57.267 41.667 0.00 0.00 44.97 3.16
3532 3800 7.750947 AAAACATACTAGGATAGGTGGAAGT 57.249 36.000 0.00 0.00 44.97 3.01
3559 3827 7.604164 TGCAGGATTGTAAAAACACAAGAAAAA 59.396 29.630 0.00 0.00 41.48 1.94
3560 3828 7.099764 TGCAGGATTGTAAAAACACAAGAAAA 58.900 30.769 0.00 0.00 41.48 2.29
3561 3829 6.634805 TGCAGGATTGTAAAAACACAAGAAA 58.365 32.000 0.00 0.00 41.48 2.52
3562 3830 6.096141 TCTGCAGGATTGTAAAAACACAAGAA 59.904 34.615 15.13 0.00 41.48 2.52
3563 3831 5.592282 TCTGCAGGATTGTAAAAACACAAGA 59.408 36.000 15.13 0.00 41.48 3.02
3564 3832 5.830912 TCTGCAGGATTGTAAAAACACAAG 58.169 37.500 15.13 0.00 41.48 3.16
3565 3833 5.843673 TCTGCAGGATTGTAAAAACACAA 57.156 34.783 15.13 0.00 42.32 3.33
3566 3834 6.403866 AATCTGCAGGATTGTAAAAACACA 57.596 33.333 15.13 0.00 42.46 3.72
3567 3835 8.810652 TTTAATCTGCAGGATTGTAAAAACAC 57.189 30.769 15.13 0.00 43.68 3.32
3568 3836 8.855110 TCTTTAATCTGCAGGATTGTAAAAACA 58.145 29.630 15.13 0.00 43.68 2.83
3569 3837 9.346725 CTCTTTAATCTGCAGGATTGTAAAAAC 57.653 33.333 15.13 0.00 43.68 2.43
3570 3838 8.028938 GCTCTTTAATCTGCAGGATTGTAAAAA 58.971 33.333 15.13 8.54 43.68 1.94
3571 3839 7.362920 GGCTCTTTAATCTGCAGGATTGTAAAA 60.363 37.037 15.13 8.83 43.68 1.52
3572 3840 6.095440 GGCTCTTTAATCTGCAGGATTGTAAA 59.905 38.462 15.13 10.13 43.68 2.01
3573 3841 5.590259 GGCTCTTTAATCTGCAGGATTGTAA 59.410 40.000 15.13 9.85 43.68 2.41
3574 3842 5.126067 GGCTCTTTAATCTGCAGGATTGTA 58.874 41.667 15.13 0.00 43.68 2.41
3575 3843 3.950395 GGCTCTTTAATCTGCAGGATTGT 59.050 43.478 15.13 0.00 43.68 2.71
3576 3844 3.317430 GGGCTCTTTAATCTGCAGGATTG 59.683 47.826 15.13 0.09 43.68 2.67
3577 3845 3.560105 GGGCTCTTTAATCTGCAGGATT 58.440 45.455 15.13 14.11 45.53 3.01
3578 3846 2.158549 GGGGCTCTTTAATCTGCAGGAT 60.159 50.000 15.13 5.61 35.97 3.24
3579 3847 1.212935 GGGGCTCTTTAATCTGCAGGA 59.787 52.381 15.13 0.48 0.00 3.86
3580 3848 1.213926 AGGGGCTCTTTAATCTGCAGG 59.786 52.381 15.13 0.00 0.00 4.85
3581 3849 2.725221 AGGGGCTCTTTAATCTGCAG 57.275 50.000 7.63 7.63 0.00 4.41
3582 3850 3.384168 TCTAGGGGCTCTTTAATCTGCA 58.616 45.455 0.00 0.00 0.00 4.41
3583 3851 3.805457 GCTCTAGGGGCTCTTTAATCTGC 60.805 52.174 0.00 0.00 0.00 4.26
3584 3852 3.389329 TGCTCTAGGGGCTCTTTAATCTG 59.611 47.826 0.00 0.00 0.00 2.90
3585 3853 3.658725 TGCTCTAGGGGCTCTTTAATCT 58.341 45.455 0.00 0.00 0.00 2.40
3586 3854 4.632327 ATGCTCTAGGGGCTCTTTAATC 57.368 45.455 0.00 0.00 0.00 1.75
3587 3855 6.273260 TGAATATGCTCTAGGGGCTCTTTAAT 59.727 38.462 0.00 0.00 0.00 1.40
3588 3856 5.606749 TGAATATGCTCTAGGGGCTCTTTAA 59.393 40.000 0.00 0.00 0.00 1.52
3589 3857 5.155161 TGAATATGCTCTAGGGGCTCTTTA 58.845 41.667 0.00 0.00 0.00 1.85
3590 3858 3.976654 TGAATATGCTCTAGGGGCTCTTT 59.023 43.478 0.00 0.00 0.00 2.52
3591 3859 3.591789 TGAATATGCTCTAGGGGCTCTT 58.408 45.455 0.00 0.00 0.00 2.85
3592 3860 3.266477 TGAATATGCTCTAGGGGCTCT 57.734 47.619 0.00 0.00 0.00 4.09
3593 3861 4.566426 ATTGAATATGCTCTAGGGGCTC 57.434 45.455 9.34 0.00 0.00 4.70
3594 3862 5.188751 GTCTATTGAATATGCTCTAGGGGCT 59.811 44.000 9.34 0.00 0.00 5.19
3595 3863 5.423886 GTCTATTGAATATGCTCTAGGGGC 58.576 45.833 0.00 0.00 0.00 5.80
3596 3864 5.394663 CCGTCTATTGAATATGCTCTAGGGG 60.395 48.000 0.00 0.00 0.00 4.79
3597 3865 5.186021 ACCGTCTATTGAATATGCTCTAGGG 59.814 44.000 0.00 0.00 0.00 3.53
3598 3866 6.274157 ACCGTCTATTGAATATGCTCTAGG 57.726 41.667 0.00 0.00 0.00 3.02
3599 3867 6.071896 TGGACCGTCTATTGAATATGCTCTAG 60.072 42.308 0.00 0.00 0.00 2.43
3600 3868 5.773176 TGGACCGTCTATTGAATATGCTCTA 59.227 40.000 0.00 0.00 0.00 2.43
3601 3869 4.588951 TGGACCGTCTATTGAATATGCTCT 59.411 41.667 0.00 0.00 0.00 4.09
3602 3870 4.883083 TGGACCGTCTATTGAATATGCTC 58.117 43.478 0.00 0.00 0.00 4.26
3603 3871 4.955811 TGGACCGTCTATTGAATATGCT 57.044 40.909 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.