Multiple sequence alignment - TraesCS6D01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G262500 chr6D 100.000 5281 0 0 1 5281 370800059 370794779 0.000000e+00 9753
1 TraesCS6D01G262500 chr6D 100.000 58 0 0 4288 4345 370795714 370795657 2.010000e-19 108
2 TraesCS6D01G262500 chr6D 100.000 58 0 0 4346 4403 370795772 370795715 2.010000e-19 108
3 TraesCS6D01G262500 chr6A 94.919 2952 88 30 512 3428 511573072 511570148 0.000000e+00 4564
4 TraesCS6D01G262500 chr6A 94.839 620 24 6 3734 4345 511569755 511569136 0.000000e+00 961
5 TraesCS6D01G262500 chr6A 95.000 500 22 3 4346 4842 511569194 511568695 0.000000e+00 782
6 TraesCS6D01G262500 chr6A 86.798 712 72 16 3555 4262 207847272 207846579 0.000000e+00 774
7 TraesCS6D01G262500 chr6A 94.366 284 10 3 3458 3735 511570162 511569879 1.050000e-116 431
8 TraesCS6D01G262500 chr6A 85.942 313 7 17 4970 5281 511568672 511568396 3.090000e-77 300
9 TraesCS6D01G262500 chr6B 93.582 1340 61 13 1653 2971 555858558 555857223 0.000000e+00 1975
10 TraesCS6D01G262500 chr6B 90.328 1158 56 30 423 1544 555860003 555858866 0.000000e+00 1467
11 TraesCS6D01G262500 chr6B 92.322 521 27 7 4346 4861 555855760 555855248 0.000000e+00 728
12 TraesCS6D01G262500 chr6B 87.527 457 50 5 2970 3424 100511632 100512083 6.060000e-144 521
13 TraesCS6D01G262500 chr6B 86.652 457 54 5 2970 3424 675491031 675490580 2.840000e-137 499
14 TraesCS6D01G262500 chr6B 91.698 265 19 3 3458 3719 555856763 555856499 1.080000e-96 364
15 TraesCS6D01G262500 chr6B 97.170 212 6 0 211 422 555210647 555210858 5.030000e-95 359
16 TraesCS6D01G262500 chr6B 89.862 217 15 5 1 214 107182151 107182363 6.740000e-69 272
17 TraesCS6D01G262500 chr6B 93.269 104 7 0 4864 4967 555855160 555855057 2.550000e-33 154
18 TraesCS6D01G262500 chr6B 90.909 88 8 0 1546 1633 555858834 555858747 9.290000e-23 119
19 TraesCS6D01G262500 chr6B 94.595 74 3 1 5209 5281 555854881 555854808 4.320000e-21 113
20 TraesCS6D01G262500 chr6B 91.250 80 4 3 4841 4917 497238445 497238524 7.230000e-19 106
21 TraesCS6D01G262500 chr4D 87.552 715 62 18 3550 4256 483593517 483594212 0.000000e+00 802
22 TraesCS6D01G262500 chr4D 92.529 174 12 1 248 421 78588840 78589012 1.140000e-61 248
23 TraesCS6D01G262500 chr4D 91.908 173 13 1 248 420 78540471 78540642 1.900000e-59 241
24 TraesCS6D01G262500 chr4D 89.535 172 17 1 248 419 78536637 78536807 3.200000e-52 217
25 TraesCS6D01G262500 chr2D 87.500 712 67 15 3555 4262 508073071 508072378 0.000000e+00 802
26 TraesCS6D01G262500 chr2D 89.573 211 22 0 211 421 323391851 323391641 8.720000e-68 268
27 TraesCS6D01G262500 chr2D 89.100 211 23 0 211 421 323966362 323966152 4.060000e-66 263
28 TraesCS6D01G262500 chr2D 91.250 80 6 1 4840 4918 648111201 648111280 2.010000e-19 108
29 TraesCS6D01G262500 chr2A 87.360 712 69 14 3555 4262 41168304 41167610 0.000000e+00 797
30 TraesCS6D01G262500 chr2A 86.975 714 69 17 3550 4256 463648718 463649414 0.000000e+00 782
31 TraesCS6D01G262500 chr2A 94.737 76 2 2 4840 4915 127156106 127156033 3.340000e-22 117
32 TraesCS6D01G262500 chr3B 87.079 712 71 14 3555 4262 729601554 729600860 0.000000e+00 785
33 TraesCS6D01G262500 chr3B 95.109 184 9 0 28 211 666611800 666611617 1.860000e-74 291
34 TraesCS6D01G262500 chr3B 85.433 254 30 4 3463 3715 265731429 265731182 1.890000e-64 257
35 TraesCS6D01G262500 chrUn 83.843 817 92 23 3446 4256 112167811 112168593 0.000000e+00 741
36 TraesCS6D01G262500 chr1D 83.863 818 76 26 3446 4256 379872290 379873058 0.000000e+00 728
37 TraesCS6D01G262500 chr1A 85.674 712 71 15 3555 4262 71317405 71316721 0.000000e+00 721
38 TraesCS6D01G262500 chr1A 82.822 815 89 19 3446 4256 25672657 25673424 0.000000e+00 682
39 TraesCS6D01G262500 chr1A 89.059 457 43 5 2970 3424 71317929 71317478 1.280000e-155 560
40 TraesCS6D01G262500 chr1A 88.840 457 44 5 2970 3424 25672228 25672679 5.980000e-154 555
41 TraesCS6D01G262500 chr1A 93.396 212 7 1 211 422 574814149 574813945 1.850000e-79 307
42 TraesCS6D01G262500 chr2B 87.965 457 48 5 2970 3424 40503930 40503479 2.800000e-147 532
43 TraesCS6D01G262500 chr2B 92.891 211 12 2 1 210 631244728 631244936 2.390000e-78 303
44 TraesCS6D01G262500 chr2B 91.943 211 17 0 1 211 675327120 675327330 4.000000e-76 296
45 TraesCS6D01G262500 chr2B 89.623 212 21 1 211 422 391971435 391971225 8.720000e-68 268
46 TraesCS6D01G262500 chr7B 87.146 459 48 7 2970 3424 502660827 502660376 1.310000e-140 510
47 TraesCS6D01G262500 chr7B 87.146 459 48 7 2970 3424 502665268 502664817 1.310000e-140 510
48 TraesCS6D01G262500 chr7B 86.710 459 50 7 2970 3424 502658682 502658231 2.840000e-137 499
49 TraesCS6D01G262500 chr7B 91.628 215 12 3 1 214 8985827 8985618 5.170000e-75 292
50 TraesCS6D01G262500 chr7B 95.055 182 8 1 30 211 21303559 21303379 8.660000e-73 285
51 TraesCS6D01G262500 chr3A 96.262 214 8 0 1 214 737584193 737583980 8.410000e-93 351
52 TraesCS6D01G262500 chr7A 95.261 211 10 0 1 211 509845449 509845239 8.470000e-88 335
53 TraesCS6D01G262500 chr5A 93.301 209 12 2 2 209 60330118 60330325 1.850000e-79 307
54 TraesCS6D01G262500 chr4A 87.008 254 26 4 3463 3715 20576469 20576222 4.030000e-71 279
55 TraesCS6D01G262500 chr4B 88.889 162 17 1 248 409 110249715 110249555 1.160000e-46 198
56 TraesCS6D01G262500 chr1B 92.308 78 4 2 4840 4915 453517093 453517016 5.590000e-20 110
57 TraesCS6D01G262500 chr1B 92.308 78 4 2 4841 4916 453517016 453517093 5.590000e-20 110
58 TraesCS6D01G262500 chr1B 89.535 86 4 3 4838 4918 443529771 443529856 2.600000e-18 104
59 TraesCS6D01G262500 chr5B 91.139 79 7 0 4837 4915 583296675 583296597 2.010000e-19 108
60 TraesCS6D01G262500 chr3D 89.535 86 6 3 4841 4924 169888215 169888131 7.230000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G262500 chr6D 370794779 370800059 5280 True 9753.000000 9753 100.000000 1 5281 1 chr6D.!!$R1 5280
1 TraesCS6D01G262500 chr6A 511568396 511573072 4676 True 1407.600000 4564 93.013200 512 5281 5 chr6A.!!$R2 4769
2 TraesCS6D01G262500 chr6A 207846579 207847272 693 True 774.000000 774 86.798000 3555 4262 1 chr6A.!!$R1 707
3 TraesCS6D01G262500 chr6B 555854808 555860003 5195 True 702.857143 1975 92.386143 423 5281 7 chr6B.!!$R2 4858
4 TraesCS6D01G262500 chr4D 483593517 483594212 695 False 802.000000 802 87.552000 3550 4256 1 chr4D.!!$F2 706
5 TraesCS6D01G262500 chr4D 78536637 78540642 4005 False 229.000000 241 90.721500 248 420 2 chr4D.!!$F3 172
6 TraesCS6D01G262500 chr2D 508072378 508073071 693 True 802.000000 802 87.500000 3555 4262 1 chr2D.!!$R3 707
7 TraesCS6D01G262500 chr2A 41167610 41168304 694 True 797.000000 797 87.360000 3555 4262 1 chr2A.!!$R1 707
8 TraesCS6D01G262500 chr2A 463648718 463649414 696 False 782.000000 782 86.975000 3550 4256 1 chr2A.!!$F1 706
9 TraesCS6D01G262500 chr3B 729600860 729601554 694 True 785.000000 785 87.079000 3555 4262 1 chr3B.!!$R3 707
10 TraesCS6D01G262500 chrUn 112167811 112168593 782 False 741.000000 741 83.843000 3446 4256 1 chrUn.!!$F1 810
11 TraesCS6D01G262500 chr1D 379872290 379873058 768 False 728.000000 728 83.863000 3446 4256 1 chr1D.!!$F1 810
12 TraesCS6D01G262500 chr1A 71316721 71317929 1208 True 640.500000 721 87.366500 2970 4262 2 chr1A.!!$R2 1292
13 TraesCS6D01G262500 chr1A 25672228 25673424 1196 False 618.500000 682 85.831000 2970 4256 2 chr1A.!!$F1 1286
14 TraesCS6D01G262500 chr7B 502658231 502665268 7037 True 506.333333 510 87.000667 2970 3424 3 chr7B.!!$R3 454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.105039 CCTTCTACCTGTCATCCGGC 59.895 60.000 0.00 0.00 0.00 6.13 F
235 236 0.105039 CTTCTACCTGTCATCCGGCC 59.895 60.000 0.00 0.00 0.00 6.13 F
246 247 0.173255 CATCCGGCCACACAAATTCC 59.827 55.000 2.24 0.00 0.00 3.01 F
274 275 0.179119 GGAAGGTCATGCAATGCTGC 60.179 55.000 6.82 0.00 46.21 5.25 F
1300 1477 0.246635 GTAAGTCTCTGGCCGCTGAA 59.753 55.000 0.00 0.00 0.00 3.02 F
1329 1513 0.758734 TGGAGGGGTCATCGCTAATG 59.241 55.000 0.00 0.00 38.88 1.90 F
1404 1588 1.131693 GGTTTTCTATTGAACCGCCCG 59.868 52.381 0.00 0.00 36.31 6.13 F
1802 2197 2.278026 CTGCGTATCAGTACTGTGCA 57.722 50.000 21.99 22.66 38.02 4.57 F
3436 6666 4.955811 TGGCAGTAACTTCTCTCTCAAA 57.044 40.909 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1488 0.759346 ACATTAGCGATGACCCCTCC 59.241 55.000 9.65 0.00 39.15 4.30 R
1709 2097 0.904649 ATGGTGATCAGTTCCTCGCA 59.095 50.000 0.00 0.00 0.00 5.10 R
1794 2189 4.641396 ACACTTTCATAAGCTGCACAGTA 58.359 39.130 1.02 0.00 34.60 2.74 R
1917 2315 6.294675 CCTGATGGACATAGAAAGCAACAAAA 60.295 38.462 0.00 0.00 34.57 2.44 R
2946 3794 1.490490 ACATAAGGACGGGCATCATGT 59.510 47.619 0.00 0.00 0.00 3.21 R
3101 3949 6.824196 TCGACATCTACTCTGAAGAACATACT 59.176 38.462 0.00 0.00 0.00 2.12 R
3141 3989 8.060931 TGCAATAACATATTTGTGGCTTAGAA 57.939 30.769 0.00 0.00 35.83 2.10 R
3472 6702 5.122239 TGCACAACTTATCATCAGCAGTTAC 59.878 40.000 0.00 0.00 0.00 2.50 R
5059 13076 0.095417 GAAATTCGTGAGCTCCGCAC 59.905 55.000 12.15 2.25 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.462109 CATCTCTAGCTATGTGTTCTTTGTC 57.538 40.000 0.00 0.00 0.00 3.18
25 26 5.967088 TCTCTAGCTATGTGTTCTTTGTCC 58.033 41.667 0.00 0.00 0.00 4.02
26 27 5.480422 TCTCTAGCTATGTGTTCTTTGTCCA 59.520 40.000 0.00 0.00 0.00 4.02
27 28 6.155221 TCTCTAGCTATGTGTTCTTTGTCCAT 59.845 38.462 0.00 0.00 0.00 3.41
28 29 6.341316 TCTAGCTATGTGTTCTTTGTCCATC 58.659 40.000 0.00 0.00 0.00 3.51
29 30 5.171339 AGCTATGTGTTCTTTGTCCATCT 57.829 39.130 0.00 0.00 0.00 2.90
30 31 5.564550 AGCTATGTGTTCTTTGTCCATCTT 58.435 37.500 0.00 0.00 0.00 2.40
31 32 5.645497 AGCTATGTGTTCTTTGTCCATCTTC 59.355 40.000 0.00 0.00 0.00 2.87
32 33 5.645497 GCTATGTGTTCTTTGTCCATCTTCT 59.355 40.000 0.00 0.00 0.00 2.85
33 34 6.818644 GCTATGTGTTCTTTGTCCATCTTCTA 59.181 38.462 0.00 0.00 0.00 2.10
34 35 7.010923 GCTATGTGTTCTTTGTCCATCTTCTAG 59.989 40.741 0.00 0.00 0.00 2.43
35 36 4.997395 TGTGTTCTTTGTCCATCTTCTAGC 59.003 41.667 0.00 0.00 0.00 3.42
36 37 5.221722 TGTGTTCTTTGTCCATCTTCTAGCT 60.222 40.000 0.00 0.00 0.00 3.32
37 38 6.014584 TGTGTTCTTTGTCCATCTTCTAGCTA 60.015 38.462 0.00 0.00 0.00 3.32
38 39 6.533367 GTGTTCTTTGTCCATCTTCTAGCTAG 59.467 42.308 15.01 15.01 0.00 3.42
39 40 5.269505 TCTTTGTCCATCTTCTAGCTAGC 57.730 43.478 16.35 6.62 0.00 3.42
40 41 4.959210 TCTTTGTCCATCTTCTAGCTAGCT 59.041 41.667 23.12 23.12 0.00 3.32
41 42 6.129874 TCTTTGTCCATCTTCTAGCTAGCTA 58.870 40.000 22.85 22.85 0.00 3.32
42 43 6.264292 TCTTTGTCCATCTTCTAGCTAGCTAG 59.736 42.308 36.20 36.20 45.38 3.42
54 55 3.868888 GCTAGCTAGCTTGTTGTATGC 57.131 47.619 33.71 7.89 45.62 3.14
55 56 2.545946 GCTAGCTAGCTTGTTGTATGCC 59.454 50.000 33.71 4.59 45.62 4.40
56 57 3.742640 GCTAGCTAGCTTGTTGTATGCCT 60.743 47.826 33.71 0.00 45.62 4.75
57 58 2.911484 AGCTAGCTTGTTGTATGCCTC 58.089 47.619 12.68 0.00 0.00 4.70
58 59 2.503356 AGCTAGCTTGTTGTATGCCTCT 59.497 45.455 12.68 0.00 0.00 3.69
59 60 2.611292 GCTAGCTTGTTGTATGCCTCTG 59.389 50.000 7.70 0.00 0.00 3.35
60 61 2.867109 AGCTTGTTGTATGCCTCTGT 57.133 45.000 0.00 0.00 0.00 3.41
61 62 2.430465 AGCTTGTTGTATGCCTCTGTG 58.570 47.619 0.00 0.00 0.00 3.66
62 63 2.038952 AGCTTGTTGTATGCCTCTGTGA 59.961 45.455 0.00 0.00 0.00 3.58
63 64 2.417933 GCTTGTTGTATGCCTCTGTGAG 59.582 50.000 0.00 0.00 0.00 3.51
64 65 2.099141 TGTTGTATGCCTCTGTGAGC 57.901 50.000 0.00 0.00 0.00 4.26
65 66 1.625315 TGTTGTATGCCTCTGTGAGCT 59.375 47.619 0.00 0.00 0.00 4.09
66 67 2.005451 GTTGTATGCCTCTGTGAGCTG 58.995 52.381 0.00 0.00 0.00 4.24
67 68 0.107993 TGTATGCCTCTGTGAGCTGC 60.108 55.000 0.00 0.00 0.00 5.25
68 69 0.177604 GTATGCCTCTGTGAGCTGCT 59.822 55.000 0.00 0.00 0.00 4.24
69 70 0.463204 TATGCCTCTGTGAGCTGCTC 59.537 55.000 22.38 22.38 0.00 4.26
70 71 2.125188 GCCTCTGTGAGCTGCTCC 60.125 66.667 25.61 17.15 0.00 4.70
71 72 2.658064 GCCTCTGTGAGCTGCTCCT 61.658 63.158 25.61 0.00 0.00 3.69
72 73 1.326213 GCCTCTGTGAGCTGCTCCTA 61.326 60.000 25.61 13.89 0.00 2.94
73 74 0.746063 CCTCTGTGAGCTGCTCCTAG 59.254 60.000 25.61 21.63 0.00 3.02
74 75 0.746063 CTCTGTGAGCTGCTCCTAGG 59.254 60.000 25.61 0.82 0.00 3.02
75 76 1.143620 CTGTGAGCTGCTCCTAGGC 59.856 63.158 25.61 11.60 0.00 3.93
76 77 2.105930 GTGAGCTGCTCCTAGGCG 59.894 66.667 25.61 0.00 34.52 5.52
77 78 3.842923 TGAGCTGCTCCTAGGCGC 61.843 66.667 25.61 17.12 34.52 6.53
78 79 4.600576 GAGCTGCTCCTAGGCGCC 62.601 72.222 21.89 21.89 34.30 6.53
81 82 3.474570 CTGCTCCTAGGCGCCCTT 61.475 66.667 26.15 8.44 34.61 3.95
82 83 3.746949 CTGCTCCTAGGCGCCCTTG 62.747 68.421 26.15 13.61 34.61 3.61
83 84 3.787001 GCTCCTAGGCGCCCTTGT 61.787 66.667 26.15 7.06 34.61 3.16
84 85 2.432300 GCTCCTAGGCGCCCTTGTA 61.432 63.158 26.15 8.04 34.61 2.41
85 86 1.759459 GCTCCTAGGCGCCCTTGTAT 61.759 60.000 26.15 5.68 34.61 2.29
86 87 0.318762 CTCCTAGGCGCCCTTGTATC 59.681 60.000 26.15 0.00 34.61 2.24
87 88 0.105658 TCCTAGGCGCCCTTGTATCT 60.106 55.000 26.15 3.86 34.61 1.98
88 89 0.759346 CCTAGGCGCCCTTGTATCTT 59.241 55.000 26.15 2.97 34.61 2.40
89 90 1.141053 CCTAGGCGCCCTTGTATCTTT 59.859 52.381 26.15 2.07 34.61 2.52
90 91 2.213499 CTAGGCGCCCTTGTATCTTTG 58.787 52.381 26.15 0.00 34.61 2.77
91 92 0.328258 AGGCGCCCTTGTATCTTTGT 59.672 50.000 26.15 0.00 0.00 2.83
92 93 0.733150 GGCGCCCTTGTATCTTTGTC 59.267 55.000 18.11 0.00 0.00 3.18
93 94 0.373716 GCGCCCTTGTATCTTTGTCG 59.626 55.000 0.00 0.00 0.00 4.35
94 95 1.722011 CGCCCTTGTATCTTTGTCGT 58.278 50.000 0.00 0.00 0.00 4.34
95 96 2.073816 CGCCCTTGTATCTTTGTCGTT 58.926 47.619 0.00 0.00 0.00 3.85
96 97 2.482721 CGCCCTTGTATCTTTGTCGTTT 59.517 45.455 0.00 0.00 0.00 3.60
97 98 3.666902 CGCCCTTGTATCTTTGTCGTTTG 60.667 47.826 0.00 0.00 0.00 2.93
98 99 3.252458 GCCCTTGTATCTTTGTCGTTTGT 59.748 43.478 0.00 0.00 0.00 2.83
99 100 4.261447 GCCCTTGTATCTTTGTCGTTTGTT 60.261 41.667 0.00 0.00 0.00 2.83
100 101 5.735070 GCCCTTGTATCTTTGTCGTTTGTTT 60.735 40.000 0.00 0.00 0.00 2.83
101 102 6.270064 CCCTTGTATCTTTGTCGTTTGTTTT 58.730 36.000 0.00 0.00 0.00 2.43
102 103 6.416750 CCCTTGTATCTTTGTCGTTTGTTTTC 59.583 38.462 0.00 0.00 0.00 2.29
103 104 7.193595 CCTTGTATCTTTGTCGTTTGTTTTCT 58.806 34.615 0.00 0.00 0.00 2.52
104 105 7.700656 CCTTGTATCTTTGTCGTTTGTTTTCTT 59.299 33.333 0.00 0.00 0.00 2.52
105 106 8.973835 TTGTATCTTTGTCGTTTGTTTTCTTT 57.026 26.923 0.00 0.00 0.00 2.52
106 107 8.609478 TGTATCTTTGTCGTTTGTTTTCTTTC 57.391 30.769 0.00 0.00 0.00 2.62
107 108 7.698970 TGTATCTTTGTCGTTTGTTTTCTTTCC 59.301 33.333 0.00 0.00 0.00 3.13
108 109 6.262193 TCTTTGTCGTTTGTTTTCTTTCCT 57.738 33.333 0.00 0.00 0.00 3.36
109 110 6.683715 TCTTTGTCGTTTGTTTTCTTTCCTT 58.316 32.000 0.00 0.00 0.00 3.36
110 111 7.149307 TCTTTGTCGTTTGTTTTCTTTCCTTT 58.851 30.769 0.00 0.00 0.00 3.11
111 112 7.654116 TCTTTGTCGTTTGTTTTCTTTCCTTTT 59.346 29.630 0.00 0.00 0.00 2.27
112 113 8.813643 TTTGTCGTTTGTTTTCTTTCCTTTTA 57.186 26.923 0.00 0.00 0.00 1.52
113 114 8.455598 TTGTCGTTTGTTTTCTTTCCTTTTAG 57.544 30.769 0.00 0.00 0.00 1.85
114 115 7.595604 TGTCGTTTGTTTTCTTTCCTTTTAGT 58.404 30.769 0.00 0.00 0.00 2.24
115 116 8.083462 TGTCGTTTGTTTTCTTTCCTTTTAGTT 58.917 29.630 0.00 0.00 0.00 2.24
116 117 8.370321 GTCGTTTGTTTTCTTTCCTTTTAGTTG 58.630 33.333 0.00 0.00 0.00 3.16
117 118 7.542824 TCGTTTGTTTTCTTTCCTTTTAGTTGG 59.457 33.333 0.00 0.00 0.00 3.77
118 119 7.542824 CGTTTGTTTTCTTTCCTTTTAGTTGGA 59.457 33.333 0.00 0.00 0.00 3.53
119 120 8.869897 GTTTGTTTTCTTTCCTTTTAGTTGGAG 58.130 33.333 0.00 0.00 33.46 3.86
120 121 7.712204 TGTTTTCTTTCCTTTTAGTTGGAGT 57.288 32.000 0.00 0.00 33.46 3.85
121 122 7.543756 TGTTTTCTTTCCTTTTAGTTGGAGTG 58.456 34.615 0.00 0.00 33.46 3.51
122 123 7.177744 TGTTTTCTTTCCTTTTAGTTGGAGTGT 59.822 33.333 0.00 0.00 33.46 3.55
123 124 6.693315 TTCTTTCCTTTTAGTTGGAGTGTG 57.307 37.500 0.00 0.00 33.46 3.82
124 125 5.130350 TCTTTCCTTTTAGTTGGAGTGTGG 58.870 41.667 0.00 0.00 33.46 4.17
125 126 4.513406 TTCCTTTTAGTTGGAGTGTGGT 57.487 40.909 0.00 0.00 33.46 4.16
126 127 4.513406 TCCTTTTAGTTGGAGTGTGGTT 57.487 40.909 0.00 0.00 0.00 3.67
127 128 4.204012 TCCTTTTAGTTGGAGTGTGGTTG 58.796 43.478 0.00 0.00 0.00 3.77
128 129 3.951680 CCTTTTAGTTGGAGTGTGGTTGT 59.048 43.478 0.00 0.00 0.00 3.32
129 130 5.104444 TCCTTTTAGTTGGAGTGTGGTTGTA 60.104 40.000 0.00 0.00 0.00 2.41
130 131 5.768164 CCTTTTAGTTGGAGTGTGGTTGTAT 59.232 40.000 0.00 0.00 0.00 2.29
131 132 6.264518 CCTTTTAGTTGGAGTGTGGTTGTATT 59.735 38.462 0.00 0.00 0.00 1.89
132 133 7.201875 CCTTTTAGTTGGAGTGTGGTTGTATTT 60.202 37.037 0.00 0.00 0.00 1.40
133 134 6.870971 TTAGTTGGAGTGTGGTTGTATTTC 57.129 37.500 0.00 0.00 0.00 2.17
134 135 3.813166 AGTTGGAGTGTGGTTGTATTTCG 59.187 43.478 0.00 0.00 0.00 3.46
135 136 2.773487 TGGAGTGTGGTTGTATTTCGG 58.227 47.619 0.00 0.00 0.00 4.30
136 137 2.369203 TGGAGTGTGGTTGTATTTCGGA 59.631 45.455 0.00 0.00 0.00 4.55
137 138 3.000727 GGAGTGTGGTTGTATTTCGGAG 58.999 50.000 0.00 0.00 0.00 4.63
138 139 3.556423 GGAGTGTGGTTGTATTTCGGAGT 60.556 47.826 0.00 0.00 0.00 3.85
139 140 4.062991 GAGTGTGGTTGTATTTCGGAGTT 58.937 43.478 0.00 0.00 0.00 3.01
140 141 3.813166 AGTGTGGTTGTATTTCGGAGTTG 59.187 43.478 0.00 0.00 0.00 3.16
141 142 3.562557 GTGTGGTTGTATTTCGGAGTTGT 59.437 43.478 0.00 0.00 0.00 3.32
142 143 4.751098 GTGTGGTTGTATTTCGGAGTTGTA 59.249 41.667 0.00 0.00 0.00 2.41
143 144 5.236911 GTGTGGTTGTATTTCGGAGTTGTAA 59.763 40.000 0.00 0.00 0.00 2.41
144 145 5.998981 TGTGGTTGTATTTCGGAGTTGTAAT 59.001 36.000 0.00 0.00 0.00 1.89
145 146 6.148150 TGTGGTTGTATTTCGGAGTTGTAATC 59.852 38.462 0.00 0.00 0.00 1.75
146 147 5.644636 TGGTTGTATTTCGGAGTTGTAATCC 59.355 40.000 0.00 0.00 0.00 3.01
147 148 5.878669 GGTTGTATTTCGGAGTTGTAATCCT 59.121 40.000 0.00 0.00 34.45 3.24
148 149 6.183360 GGTTGTATTTCGGAGTTGTAATCCTG 60.183 42.308 0.00 0.00 34.45 3.86
149 150 5.424757 TGTATTTCGGAGTTGTAATCCTGG 58.575 41.667 0.00 0.00 34.45 4.45
150 151 2.396590 TTCGGAGTTGTAATCCTGGC 57.603 50.000 0.00 0.00 34.45 4.85
151 152 0.539986 TCGGAGTTGTAATCCTGGCC 59.460 55.000 0.00 0.00 34.45 5.36
152 153 0.810031 CGGAGTTGTAATCCTGGCCG 60.810 60.000 0.00 0.00 34.45 6.13
153 154 0.463833 GGAGTTGTAATCCTGGCCGG 60.464 60.000 3.88 3.88 33.77 6.13
154 155 0.252197 GAGTTGTAATCCTGGCCGGT 59.748 55.000 11.58 0.00 0.00 5.28
155 156 0.696501 AGTTGTAATCCTGGCCGGTT 59.303 50.000 11.58 1.23 0.00 4.44
156 157 0.808755 GTTGTAATCCTGGCCGGTTG 59.191 55.000 11.58 0.00 0.00 3.77
157 158 0.693622 TTGTAATCCTGGCCGGTTGA 59.306 50.000 11.58 1.27 0.00 3.18
158 159 0.916086 TGTAATCCTGGCCGGTTGAT 59.084 50.000 11.58 4.00 0.00 2.57
159 160 1.308998 GTAATCCTGGCCGGTTGATG 58.691 55.000 11.58 0.00 0.00 3.07
160 161 0.182537 TAATCCTGGCCGGTTGATGG 59.817 55.000 11.58 0.00 0.00 3.51
170 171 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
171 172 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
172 173 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
173 174 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
174 175 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
175 176 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
182 183 2.734276 TTGTTAATTCAAAGCCGGGC 57.266 45.000 12.11 12.11 0.00 6.13
183 184 1.917872 TGTTAATTCAAAGCCGGGCT 58.082 45.000 17.69 17.69 42.56 5.19
184 185 1.816224 TGTTAATTCAAAGCCGGGCTC 59.184 47.619 24.08 6.82 38.25 4.70
185 186 2.092323 GTTAATTCAAAGCCGGGCTCT 58.908 47.619 24.08 5.15 38.25 4.09
186 187 2.492088 GTTAATTCAAAGCCGGGCTCTT 59.508 45.455 24.08 15.43 38.25 2.85
187 188 1.177401 AATTCAAAGCCGGGCTCTTC 58.823 50.000 24.08 0.00 38.25 2.87
188 189 0.329596 ATTCAAAGCCGGGCTCTTCT 59.670 50.000 24.08 2.98 38.25 2.85
189 190 0.110486 TTCAAAGCCGGGCTCTTCTT 59.890 50.000 24.08 10.16 38.25 2.52
190 191 0.606401 TCAAAGCCGGGCTCTTCTTG 60.606 55.000 24.08 21.74 38.25 3.02
191 192 0.606401 CAAAGCCGGGCTCTTCTTGA 60.606 55.000 24.08 0.00 38.25 3.02
192 193 0.322008 AAAGCCGGGCTCTTCTTGAG 60.322 55.000 24.08 0.00 45.33 3.02
203 204 3.914312 CTCTTCTTGAGCCTACGTTTCA 58.086 45.455 0.00 0.00 35.84 2.69
204 205 4.307432 CTCTTCTTGAGCCTACGTTTCAA 58.693 43.478 0.00 0.00 35.84 2.69
205 206 4.699637 TCTTCTTGAGCCTACGTTTCAAA 58.300 39.130 0.00 0.00 31.11 2.69
206 207 5.120399 TCTTCTTGAGCCTACGTTTCAAAA 58.880 37.500 0.00 0.00 31.11 2.44
207 208 5.587043 TCTTCTTGAGCCTACGTTTCAAAAA 59.413 36.000 0.00 0.00 31.11 1.94
231 232 4.302559 AAAACCCTTCTACCTGTCATCC 57.697 45.455 0.00 0.00 0.00 3.51
232 233 1.486211 ACCCTTCTACCTGTCATCCG 58.514 55.000 0.00 0.00 0.00 4.18
233 234 0.753262 CCCTTCTACCTGTCATCCGG 59.247 60.000 0.00 0.00 0.00 5.14
234 235 0.105039 CCTTCTACCTGTCATCCGGC 59.895 60.000 0.00 0.00 0.00 6.13
235 236 0.105039 CTTCTACCTGTCATCCGGCC 59.895 60.000 0.00 0.00 0.00 6.13
236 237 0.616395 TTCTACCTGTCATCCGGCCA 60.616 55.000 2.24 0.00 0.00 5.36
237 238 1.144057 CTACCTGTCATCCGGCCAC 59.856 63.158 2.24 0.00 0.00 5.01
238 239 1.610967 TACCTGTCATCCGGCCACA 60.611 57.895 2.24 0.00 0.00 4.17
239 240 1.895020 TACCTGTCATCCGGCCACAC 61.895 60.000 2.24 0.00 0.00 3.82
240 241 2.347114 CTGTCATCCGGCCACACA 59.653 61.111 2.24 0.00 0.00 3.72
241 242 1.302431 CTGTCATCCGGCCACACAA 60.302 57.895 2.24 0.00 0.00 3.33
242 243 0.888736 CTGTCATCCGGCCACACAAA 60.889 55.000 2.24 0.00 0.00 2.83
243 244 0.251121 TGTCATCCGGCCACACAAAT 60.251 50.000 2.24 0.00 0.00 2.32
244 245 0.887933 GTCATCCGGCCACACAAATT 59.112 50.000 2.24 0.00 0.00 1.82
245 246 1.135402 GTCATCCGGCCACACAAATTC 60.135 52.381 2.24 0.00 0.00 2.17
246 247 0.173255 CATCCGGCCACACAAATTCC 59.827 55.000 2.24 0.00 0.00 3.01
253 254 1.717194 CCACACAAATTCCTGCATGC 58.283 50.000 11.82 11.82 0.00 4.06
274 275 0.179119 GGAAGGTCATGCAATGCTGC 60.179 55.000 6.82 0.00 46.21 5.25
303 304 3.451556 ATGGCGCAGATGGGACGAG 62.452 63.158 10.83 0.00 39.11 4.18
325 326 0.649475 GCTCAACGCACTGCTATCTG 59.351 55.000 0.00 0.00 38.92 2.90
337 338 3.055530 ACTGCTATCTGGTTTCACTCAGG 60.056 47.826 0.00 0.00 0.00 3.86
340 341 0.329596 ATCTGGTTTCACTCAGGGCC 59.670 55.000 0.00 0.00 0.00 5.80
343 344 1.059584 TGGTTTCACTCAGGGCCAGA 61.060 55.000 6.18 1.06 0.00 3.86
344 345 0.329596 GGTTTCACTCAGGGCCAGAT 59.670 55.000 6.18 0.00 0.00 2.90
352 353 2.173569 ACTCAGGGCCAGATGATTTACC 59.826 50.000 6.18 0.00 0.00 2.85
353 354 1.494721 TCAGGGCCAGATGATTTACCC 59.505 52.381 6.18 0.00 37.63 3.69
357 358 2.158475 GGGCCAGATGATTTACCCATGA 60.158 50.000 4.39 0.00 37.30 3.07
365 366 7.423199 CAGATGATTTACCCATGATTTGTGAG 58.577 38.462 0.00 0.00 0.00 3.51
379 380 6.220201 TGATTTGTGAGAACGAGTGTAATGA 58.780 36.000 0.00 0.00 0.00 2.57
390 391 9.136952 AGAACGAGTGTAATGACATTACTTAAC 57.863 33.333 29.42 21.96 44.17 2.01
413 414 6.385033 ACTAATATATACTCGTTTCACCCGC 58.615 40.000 0.00 0.00 0.00 6.13
459 460 5.552870 TTAACTTGCAACTCTCCTCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
465 466 5.398603 TGCAACTCTCCTCTTCTTCTTAG 57.601 43.478 0.00 0.00 0.00 2.18
796 806 3.434596 CCCCCTCCCGTTTATAGGAAAAG 60.435 52.174 0.00 0.00 31.64 2.27
797 807 3.457012 CCCCTCCCGTTTATAGGAAAAGA 59.543 47.826 0.00 0.00 31.64 2.52
973 996 3.141488 ACGGCTCGGCTCGATTCT 61.141 61.111 11.42 0.00 34.61 2.40
1097 1124 1.503818 GGCGGTTTCGTTGAGCTTGA 61.504 55.000 0.00 0.00 38.89 3.02
1133 1308 0.889186 AAGAGCGTGGCGATTTTGGT 60.889 50.000 0.00 0.00 0.00 3.67
1156 1331 6.403309 GGTTTGGATTTAGCTTACTGTGCTAC 60.403 42.308 0.00 0.00 41.95 3.58
1300 1477 0.246635 GTAAGTCTCTGGCCGCTGAA 59.753 55.000 0.00 0.00 0.00 3.02
1311 1488 2.753966 CCGCTGAAGTGGCCGATTG 61.754 63.158 0.00 0.00 39.04 2.67
1329 1513 0.758734 TGGAGGGGTCATCGCTAATG 59.241 55.000 0.00 0.00 38.88 1.90
1332 1516 1.412710 GAGGGGTCATCGCTAATGTCA 59.587 52.381 0.00 0.00 38.88 3.58
1346 1530 4.023707 GCTAATGTCATATGGTTGTGGCTC 60.024 45.833 2.13 0.00 0.00 4.70
1359 1543 1.271325 TGTGGCTCTGGTTGTGGTATG 60.271 52.381 0.00 0.00 0.00 2.39
1394 1578 8.522830 CACTATGTGTTGATTGGGTTTTCTATT 58.477 33.333 0.00 0.00 0.00 1.73
1404 1588 1.131693 GGTTTTCTATTGAACCGCCCG 59.868 52.381 0.00 0.00 36.31 6.13
1417 1602 2.344203 CGCCCGGGTTTTATTGCCA 61.344 57.895 24.63 0.00 0.00 4.92
1526 1711 6.334202 GTGACTTCTGTAGAAATAGGACAGG 58.666 44.000 1.73 0.00 33.07 4.00
1589 1804 7.092716 GTGTTGGCAATTAATGTCTGAATTCT 58.907 34.615 1.92 0.00 33.68 2.40
1709 2097 5.107824 CGACACTTGTCTGAATGATGATCT 58.892 41.667 7.74 0.00 42.66 2.75
1781 2176 3.576550 GGCTTAGGAGTCTATTGAGGAGG 59.423 52.174 0.00 0.00 0.00 4.30
1802 2197 2.278026 CTGCGTATCAGTACTGTGCA 57.722 50.000 21.99 22.66 38.02 4.57
1917 2315 5.556915 TCGGTGGAATCACTTACAGATTTT 58.443 37.500 0.00 0.00 43.17 1.82
2037 2435 9.590451 GAATGATCAACCAAATGATGTAACATT 57.410 29.630 0.00 0.00 40.08 2.71
2132 2530 6.542005 TGTTCATCACCGTAATGCTTATTCAT 59.458 34.615 0.00 0.00 0.00 2.57
3100 3948 9.136323 AGTACCTCAAGAGAAAATTTCATTTGT 57.864 29.630 8.55 3.14 31.77 2.83
3141 3989 9.383519 AGTAGATGTCGATTCATGTTACATTTT 57.616 29.630 0.00 0.00 31.19 1.82
3274 6421 8.698854 GCTGATCTCGTTCAGATTTAAATCTAG 58.301 37.037 26.34 19.98 44.88 2.43
3280 6427 8.893219 TCGTTCAGATTTAAATCTAGCATCAT 57.107 30.769 26.34 3.77 43.65 2.45
3418 6648 8.446599 TGAAGCCTAACTAAAATACTAATGGC 57.553 34.615 0.00 0.00 37.15 4.40
3419 6649 8.050325 TGAAGCCTAACTAAAATACTAATGGCA 58.950 33.333 0.00 0.00 39.10 4.92
3420 6650 8.451908 AAGCCTAACTAAAATACTAATGGCAG 57.548 34.615 0.00 0.00 39.10 4.85
3421 6651 7.574607 AGCCTAACTAAAATACTAATGGCAGT 58.425 34.615 0.00 0.00 39.10 4.40
3422 6652 8.711170 AGCCTAACTAAAATACTAATGGCAGTA 58.289 33.333 0.00 0.00 39.10 2.74
3423 6653 9.333724 GCCTAACTAAAATACTAATGGCAGTAA 57.666 33.333 0.00 0.00 34.77 2.24
3431 6661 8.950208 AAATACTAATGGCAGTAACTTCTCTC 57.050 34.615 0.00 0.00 34.77 3.20
3432 6662 7.906199 ATACTAATGGCAGTAACTTCTCTCT 57.094 36.000 0.00 0.00 34.77 3.10
3433 6663 6.215495 ACTAATGGCAGTAACTTCTCTCTC 57.785 41.667 0.00 0.00 0.00 3.20
3434 6664 5.717178 ACTAATGGCAGTAACTTCTCTCTCA 59.283 40.000 0.00 0.00 0.00 3.27
3435 6665 5.489792 AATGGCAGTAACTTCTCTCTCAA 57.510 39.130 0.00 0.00 0.00 3.02
3436 6666 4.955811 TGGCAGTAACTTCTCTCTCAAA 57.044 40.909 0.00 0.00 0.00 2.69
3437 6667 5.290493 TGGCAGTAACTTCTCTCTCAAAA 57.710 39.130 0.00 0.00 0.00 2.44
3438 6668 5.680619 TGGCAGTAACTTCTCTCTCAAAAA 58.319 37.500 0.00 0.00 0.00 1.94
3535 6827 1.732809 GAACTTTGAACTAGCGCCTCC 59.267 52.381 2.29 0.00 0.00 4.30
3553 8293 3.244561 CCTCCACATAAGACCGGCAATAT 60.245 47.826 0.00 0.00 0.00 1.28
3555 8295 5.512404 CCTCCACATAAGACCGGCAATATTA 60.512 44.000 0.00 0.00 0.00 0.98
3557 8297 5.995282 TCCACATAAGACCGGCAATATTAAG 59.005 40.000 0.00 0.00 0.00 1.85
3558 8298 5.763204 CCACATAAGACCGGCAATATTAAGT 59.237 40.000 0.00 0.00 0.00 2.24
3561 8303 8.188139 CACATAAGACCGGCAATATTAAGTTTT 58.812 33.333 0.00 0.00 0.00 2.43
3661 8404 9.208022 CTTTGTAAAATAGTGACTGTCAGATGA 57.792 33.333 11.41 0.00 0.00 2.92
3673 8416 5.678583 ACTGTCAGATGACCTTGGAATATG 58.321 41.667 6.91 0.00 44.15 1.78
3730 8480 5.744887 GCAAAATAATACTCCCTCCGATCCA 60.745 44.000 0.00 0.00 0.00 3.41
3742 10614 4.384647 CCCTCCGATCCAAATTCTCTTCTT 60.385 45.833 0.00 0.00 0.00 2.52
3823 10696 3.254903 ACTCGTGCAGTACTGTATGTTCA 59.745 43.478 26.21 12.50 34.46 3.18
3899 10772 2.824936 TCATTTTCATGCCGACAATGGT 59.175 40.909 10.50 0.00 40.66 3.55
3939 10812 9.408648 CAAGAAATATTGGGTTGGTACTCTATT 57.591 33.333 0.00 0.00 0.00 1.73
3940 10813 8.980481 AGAAATATTGGGTTGGTACTCTATTG 57.020 34.615 0.00 0.00 0.00 1.90
3941 10814 7.998964 AGAAATATTGGGTTGGTACTCTATTGG 59.001 37.037 0.00 0.00 0.00 3.16
3942 10815 6.841781 ATATTGGGTTGGTACTCTATTGGT 57.158 37.500 0.00 0.00 0.00 3.67
3943 10816 3.992943 TGGGTTGGTACTCTATTGGTG 57.007 47.619 0.00 0.00 0.00 4.17
3986 10863 2.039480 ACCTCTGCTTGCTTTCTGATGA 59.961 45.455 0.00 0.00 0.00 2.92
4323 12252 3.953612 TGCTGCCAACTTATAATCCAAGG 59.046 43.478 0.00 0.00 0.00 3.61
4324 12253 3.954258 GCTGCCAACTTATAATCCAAGGT 59.046 43.478 0.00 0.00 0.00 3.50
4325 12254 5.130350 GCTGCCAACTTATAATCCAAGGTA 58.870 41.667 0.00 0.00 0.00 3.08
4326 12255 5.239525 GCTGCCAACTTATAATCCAAGGTAG 59.760 44.000 0.00 0.00 0.00 3.18
4327 12256 6.321821 TGCCAACTTATAATCCAAGGTAGT 57.678 37.500 0.00 0.00 0.00 2.73
4328 12257 6.354130 TGCCAACTTATAATCCAAGGTAGTC 58.646 40.000 0.00 0.00 0.00 2.59
4329 12258 6.069905 TGCCAACTTATAATCCAAGGTAGTCA 60.070 38.462 0.00 0.00 0.00 3.41
4331 12260 6.483640 CCAACTTATAATCCAAGGTAGTCAGC 59.516 42.308 0.00 0.00 0.00 4.26
4332 12261 7.275920 CAACTTATAATCCAAGGTAGTCAGCT 58.724 38.462 0.00 0.00 0.00 4.24
4334 12263 2.409948 AATCCAAGGTAGTCAGCTGC 57.590 50.000 9.47 4.26 31.35 5.25
4335 12264 1.577736 ATCCAAGGTAGTCAGCTGCT 58.422 50.000 9.47 12.20 31.35 4.24
4338 12267 1.550524 CCAAGGTAGTCAGCTGCTGTA 59.449 52.381 27.24 12.23 32.61 2.74
4339 12268 2.028112 CCAAGGTAGTCAGCTGCTGTAA 60.028 50.000 27.24 12.47 32.61 2.41
4340 12269 3.557054 CCAAGGTAGTCAGCTGCTGTAAA 60.557 47.826 27.24 12.13 32.61 2.01
4353 12282 0.798776 CTGTAAAAGCACTCCGGCTG 59.201 55.000 0.00 0.00 45.07 4.85
4354 12283 0.605319 TGTAAAAGCACTCCGGCTGG 60.605 55.000 4.71 4.71 45.07 4.85
4355 12284 0.605589 GTAAAAGCACTCCGGCTGGT 60.606 55.000 12.43 0.00 45.07 4.00
4356 12285 0.605319 TAAAAGCACTCCGGCTGGTG 60.605 55.000 12.43 12.29 45.07 4.17
4357 12286 3.850098 AAAGCACTCCGGCTGGTGG 62.850 63.158 17.69 11.46 45.07 4.61
4359 12288 4.643387 GCACTCCGGCTGGTGGTT 62.643 66.667 17.69 0.00 36.30 3.67
4361 12290 4.643387 ACTCCGGCTGGTGGTTGC 62.643 66.667 17.69 0.00 36.30 4.17
4362 12291 4.335647 CTCCGGCTGGTGGTTGCT 62.336 66.667 12.43 0.00 36.30 3.91
4367 12296 3.225798 GCTGGTGGTTGCTGCCAA 61.226 61.111 0.00 0.00 40.68 4.52
4424 12354 0.392595 GGGTTCCTGACGGTTGATCC 60.393 60.000 0.00 0.00 0.00 3.36
4845 12777 0.107654 GTGCAGGTCCCATGTACTCC 60.108 60.000 0.00 0.00 31.44 3.85
4851 12783 0.686769 GTCCCATGTACTCCCTCCGT 60.687 60.000 0.00 0.00 0.00 4.69
4861 12793 7.442656 CATGTACTCCCTCCGTAAAGAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
4862 12794 8.582437 CATGTACTCCCTCCGTAAAGAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
4934 12951 9.978044 GGGAGTACTAGATATTTACACGAATTT 57.022 33.333 0.00 0.00 0.00 1.82
5006 13023 4.138487 ACTTCGTTGTCCTTCTCAGTTT 57.862 40.909 0.00 0.00 0.00 2.66
5053 13070 9.282247 CATTGTAAGTTGTTTGAGATATCAAGC 57.718 33.333 9.70 9.70 0.00 4.01
5054 13071 7.977789 TGTAAGTTGTTTGAGATATCAAGCA 57.022 32.000 14.61 14.61 38.67 3.91
5055 13072 8.032952 TGTAAGTTGTTTGAGATATCAAGCAG 57.967 34.615 17.28 0.00 40.76 4.24
5056 13073 7.661437 TGTAAGTTGTTTGAGATATCAAGCAGT 59.339 33.333 17.28 10.83 40.76 4.40
5057 13074 6.734104 AGTTGTTTGAGATATCAAGCAGTC 57.266 37.500 17.28 14.56 40.76 3.51
5058 13075 6.233434 AGTTGTTTGAGATATCAAGCAGTCA 58.767 36.000 17.28 3.23 40.76 3.41
5059 13076 6.370994 AGTTGTTTGAGATATCAAGCAGTCAG 59.629 38.462 17.28 0.00 40.76 3.51
5060 13077 5.798132 TGTTTGAGATATCAAGCAGTCAGT 58.202 37.500 14.61 0.00 36.24 3.41
5061 13078 5.640783 TGTTTGAGATATCAAGCAGTCAGTG 59.359 40.000 14.61 0.00 36.24 3.66
5081 13098 2.795121 CGGAGCTCACGAATTTCAAG 57.205 50.000 17.19 0.00 0.00 3.02
5101 13121 6.640518 TCAAGTAGATAGCTCGGTTCATTTT 58.359 36.000 0.00 0.00 0.00 1.82
5108 13128 2.078392 GCTCGGTTCATTTTCCCGTTA 58.922 47.619 0.00 0.00 42.30 3.18
5150 13170 7.010160 AGTTTACTGGGAGGAAATCAATCAAA 58.990 34.615 0.00 0.00 0.00 2.69
5151 13171 7.675619 AGTTTACTGGGAGGAAATCAATCAAAT 59.324 33.333 0.00 0.00 0.00 2.32
5152 13172 5.927281 ACTGGGAGGAAATCAATCAAATG 57.073 39.130 0.00 0.00 0.00 2.32
5153 13173 5.336102 ACTGGGAGGAAATCAATCAAATGT 58.664 37.500 0.00 0.00 0.00 2.71
5210 13231 2.723209 CGTCTTGAACTCACACGTACA 58.277 47.619 0.00 0.00 31.35 2.90
5213 13264 4.553351 CGTCTTGAACTCACACGTACAGTA 60.553 45.833 0.00 0.00 31.35 2.74
5231 13282 3.673809 CAGTACCTTGCTTTCGTCTGTAC 59.326 47.826 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.478344 GGACAAAGAACACATAGCTAGAGATG 59.522 42.308 0.00 0.00 0.00 2.90
1 2 6.155221 TGGACAAAGAACACATAGCTAGAGAT 59.845 38.462 0.00 0.00 0.00 2.75
2 3 5.480422 TGGACAAAGAACACATAGCTAGAGA 59.520 40.000 0.00 0.00 0.00 3.10
3 4 5.724328 TGGACAAAGAACACATAGCTAGAG 58.276 41.667 0.00 0.00 0.00 2.43
4 5 5.738619 TGGACAAAGAACACATAGCTAGA 57.261 39.130 0.00 0.00 0.00 2.43
5 6 6.344500 AGATGGACAAAGAACACATAGCTAG 58.656 40.000 0.00 0.00 0.00 3.42
6 7 6.299805 AGATGGACAAAGAACACATAGCTA 57.700 37.500 0.00 0.00 0.00 3.32
7 8 5.171339 AGATGGACAAAGAACACATAGCT 57.829 39.130 0.00 0.00 0.00 3.32
8 9 5.645497 AGAAGATGGACAAAGAACACATAGC 59.355 40.000 0.00 0.00 0.00 2.97
9 10 7.010923 GCTAGAAGATGGACAAAGAACACATAG 59.989 40.741 0.00 0.00 0.00 2.23
10 11 6.818644 GCTAGAAGATGGACAAAGAACACATA 59.181 38.462 0.00 0.00 0.00 2.29
11 12 5.645497 GCTAGAAGATGGACAAAGAACACAT 59.355 40.000 0.00 0.00 0.00 3.21
12 13 4.997395 GCTAGAAGATGGACAAAGAACACA 59.003 41.667 0.00 0.00 0.00 3.72
13 14 5.241662 AGCTAGAAGATGGACAAAGAACAC 58.758 41.667 0.00 0.00 0.00 3.32
14 15 5.489792 AGCTAGAAGATGGACAAAGAACA 57.510 39.130 0.00 0.00 0.00 3.18
15 16 5.522097 GCTAGCTAGAAGATGGACAAAGAAC 59.478 44.000 25.15 0.00 0.00 3.01
16 17 5.423610 AGCTAGCTAGAAGATGGACAAAGAA 59.576 40.000 25.15 0.00 0.00 2.52
17 18 4.959210 AGCTAGCTAGAAGATGGACAAAGA 59.041 41.667 25.15 0.00 0.00 2.52
18 19 5.275067 AGCTAGCTAGAAGATGGACAAAG 57.725 43.478 25.15 0.00 0.00 2.77
19 20 5.221342 GCTAGCTAGCTAGAAGATGGACAAA 60.221 44.000 42.59 13.88 46.56 2.83
20 21 4.279671 GCTAGCTAGCTAGAAGATGGACAA 59.720 45.833 42.59 14.29 46.56 3.18
21 22 3.823873 GCTAGCTAGCTAGAAGATGGACA 59.176 47.826 42.59 14.48 46.56 4.02
22 23 4.434713 GCTAGCTAGCTAGAAGATGGAC 57.565 50.000 42.59 24.64 46.56 4.02
35 36 4.054671 GAGGCATACAACAAGCTAGCTAG 58.945 47.826 19.70 16.84 0.00 3.42
36 37 3.706594 AGAGGCATACAACAAGCTAGCTA 59.293 43.478 19.70 0.40 0.00 3.32
37 38 2.503356 AGAGGCATACAACAAGCTAGCT 59.497 45.455 12.68 12.68 0.00 3.32
38 39 2.611292 CAGAGGCATACAACAAGCTAGC 59.389 50.000 6.62 6.62 0.00 3.42
39 40 3.620374 CACAGAGGCATACAACAAGCTAG 59.380 47.826 0.00 0.00 0.00 3.42
40 41 3.260632 TCACAGAGGCATACAACAAGCTA 59.739 43.478 0.00 0.00 0.00 3.32
41 42 2.038952 TCACAGAGGCATACAACAAGCT 59.961 45.455 0.00 0.00 0.00 3.74
42 43 2.417933 CTCACAGAGGCATACAACAAGC 59.582 50.000 0.00 0.00 0.00 4.01
43 44 2.417933 GCTCACAGAGGCATACAACAAG 59.582 50.000 0.00 0.00 0.00 3.16
44 45 2.038952 AGCTCACAGAGGCATACAACAA 59.961 45.455 0.00 0.00 0.00 2.83
45 46 1.625315 AGCTCACAGAGGCATACAACA 59.375 47.619 0.00 0.00 0.00 3.33
46 47 2.005451 CAGCTCACAGAGGCATACAAC 58.995 52.381 0.00 0.00 0.00 3.32
47 48 1.676916 GCAGCTCACAGAGGCATACAA 60.677 52.381 0.00 0.00 0.00 2.41
48 49 0.107993 GCAGCTCACAGAGGCATACA 60.108 55.000 0.00 0.00 0.00 2.29
49 50 0.177604 AGCAGCTCACAGAGGCATAC 59.822 55.000 0.00 0.00 0.00 2.39
50 51 0.463204 GAGCAGCTCACAGAGGCATA 59.537 55.000 18.17 0.00 0.00 3.14
51 52 1.221293 GAGCAGCTCACAGAGGCAT 59.779 57.895 18.17 0.00 0.00 4.40
52 53 2.661399 GAGCAGCTCACAGAGGCA 59.339 61.111 18.17 0.00 0.00 4.75
53 54 1.326213 TAGGAGCAGCTCACAGAGGC 61.326 60.000 24.09 4.64 31.08 4.70
54 55 0.746063 CTAGGAGCAGCTCACAGAGG 59.254 60.000 24.09 4.02 31.08 3.69
55 56 0.746063 CCTAGGAGCAGCTCACAGAG 59.254 60.000 24.09 13.56 31.08 3.35
56 57 1.326213 GCCTAGGAGCAGCTCACAGA 61.326 60.000 24.09 4.82 31.08 3.41
57 58 1.143620 GCCTAGGAGCAGCTCACAG 59.856 63.158 24.09 18.03 31.08 3.66
58 59 2.714991 CGCCTAGGAGCAGCTCACA 61.715 63.158 24.09 9.68 31.08 3.58
59 60 2.105930 CGCCTAGGAGCAGCTCAC 59.894 66.667 24.09 13.08 31.08 3.51
60 61 3.842923 GCGCCTAGGAGCAGCTCA 61.843 66.667 30.12 3.38 40.60 4.26
61 62 4.600576 GGCGCCTAGGAGCAGCTC 62.601 72.222 34.32 14.69 42.66 4.09
64 65 3.474570 AAGGGCGCCTAGGAGCAG 61.475 66.667 34.32 13.63 42.66 4.24
65 66 3.785859 CAAGGGCGCCTAGGAGCA 61.786 66.667 34.32 0.00 42.66 4.26
66 67 1.759459 ATACAAGGGCGCCTAGGAGC 61.759 60.000 27.71 27.71 40.18 4.70
67 68 0.318762 GATACAAGGGCGCCTAGGAG 59.681 60.000 28.56 11.38 31.13 3.69
68 69 0.105658 AGATACAAGGGCGCCTAGGA 60.106 55.000 28.56 13.78 31.13 2.94
69 70 0.759346 AAGATACAAGGGCGCCTAGG 59.241 55.000 28.56 17.78 31.13 3.02
70 71 2.213499 CAAAGATACAAGGGCGCCTAG 58.787 52.381 28.56 18.48 31.13 3.02
71 72 1.557832 ACAAAGATACAAGGGCGCCTA 59.442 47.619 28.56 11.45 31.13 3.93
72 73 0.328258 ACAAAGATACAAGGGCGCCT 59.672 50.000 28.56 9.11 33.87 5.52
73 74 0.733150 GACAAAGATACAAGGGCGCC 59.267 55.000 21.18 21.18 0.00 6.53
74 75 0.373716 CGACAAAGATACAAGGGCGC 59.626 55.000 0.00 0.00 0.00 6.53
75 76 1.722011 ACGACAAAGATACAAGGGCG 58.278 50.000 0.00 0.00 0.00 6.13
76 77 3.252458 ACAAACGACAAAGATACAAGGGC 59.748 43.478 0.00 0.00 0.00 5.19
77 78 5.432885 AACAAACGACAAAGATACAAGGG 57.567 39.130 0.00 0.00 0.00 3.95
78 79 7.193595 AGAAAACAAACGACAAAGATACAAGG 58.806 34.615 0.00 0.00 0.00 3.61
79 80 8.614994 AAGAAAACAAACGACAAAGATACAAG 57.385 30.769 0.00 0.00 0.00 3.16
80 81 8.973835 AAAGAAAACAAACGACAAAGATACAA 57.026 26.923 0.00 0.00 0.00 2.41
81 82 7.698970 GGAAAGAAAACAAACGACAAAGATACA 59.301 33.333 0.00 0.00 0.00 2.29
82 83 7.913821 AGGAAAGAAAACAAACGACAAAGATAC 59.086 33.333 0.00 0.00 0.00 2.24
83 84 7.992008 AGGAAAGAAAACAAACGACAAAGATA 58.008 30.769 0.00 0.00 0.00 1.98
84 85 6.863275 AGGAAAGAAAACAAACGACAAAGAT 58.137 32.000 0.00 0.00 0.00 2.40
85 86 6.262193 AGGAAAGAAAACAAACGACAAAGA 57.738 33.333 0.00 0.00 0.00 2.52
86 87 6.944557 AAGGAAAGAAAACAAACGACAAAG 57.055 33.333 0.00 0.00 0.00 2.77
87 88 7.716768 AAAAGGAAAGAAAACAAACGACAAA 57.283 28.000 0.00 0.00 0.00 2.83
88 89 8.083462 ACTAAAAGGAAAGAAAACAAACGACAA 58.917 29.630 0.00 0.00 0.00 3.18
89 90 7.595604 ACTAAAAGGAAAGAAAACAAACGACA 58.404 30.769 0.00 0.00 0.00 4.35
90 91 8.370321 CAACTAAAAGGAAAGAAAACAAACGAC 58.630 33.333 0.00 0.00 0.00 4.34
91 92 7.542824 CCAACTAAAAGGAAAGAAAACAAACGA 59.457 33.333 0.00 0.00 0.00 3.85
92 93 7.542824 TCCAACTAAAAGGAAAGAAAACAAACG 59.457 33.333 0.00 0.00 0.00 3.60
93 94 8.766000 TCCAACTAAAAGGAAAGAAAACAAAC 57.234 30.769 0.00 0.00 0.00 2.93
94 95 8.590204 ACTCCAACTAAAAGGAAAGAAAACAAA 58.410 29.630 0.00 0.00 32.57 2.83
95 96 8.032451 CACTCCAACTAAAAGGAAAGAAAACAA 58.968 33.333 0.00 0.00 32.57 2.83
96 97 7.177744 ACACTCCAACTAAAAGGAAAGAAAACA 59.822 33.333 0.00 0.00 32.57 2.83
97 98 7.488150 CACACTCCAACTAAAAGGAAAGAAAAC 59.512 37.037 0.00 0.00 32.57 2.43
98 99 7.363443 CCACACTCCAACTAAAAGGAAAGAAAA 60.363 37.037 0.00 0.00 32.57 2.29
99 100 6.096282 CCACACTCCAACTAAAAGGAAAGAAA 59.904 38.462 0.00 0.00 32.57 2.52
100 101 5.592688 CCACACTCCAACTAAAAGGAAAGAA 59.407 40.000 0.00 0.00 32.57 2.52
101 102 5.130350 CCACACTCCAACTAAAAGGAAAGA 58.870 41.667 0.00 0.00 32.57 2.52
102 103 4.887655 ACCACACTCCAACTAAAAGGAAAG 59.112 41.667 0.00 0.00 32.57 2.62
103 104 4.862371 ACCACACTCCAACTAAAAGGAAA 58.138 39.130 0.00 0.00 32.57 3.13
104 105 4.513406 ACCACACTCCAACTAAAAGGAA 57.487 40.909 0.00 0.00 32.57 3.36
105 106 4.204012 CAACCACACTCCAACTAAAAGGA 58.796 43.478 0.00 0.00 0.00 3.36
106 107 3.951680 ACAACCACACTCCAACTAAAAGG 59.048 43.478 0.00 0.00 0.00 3.11
107 108 6.877611 ATACAACCACACTCCAACTAAAAG 57.122 37.500 0.00 0.00 0.00 2.27
108 109 7.467539 CGAAATACAACCACACTCCAACTAAAA 60.468 37.037 0.00 0.00 0.00 1.52
109 110 6.017770 CGAAATACAACCACACTCCAACTAAA 60.018 38.462 0.00 0.00 0.00 1.85
110 111 5.467399 CGAAATACAACCACACTCCAACTAA 59.533 40.000 0.00 0.00 0.00 2.24
111 112 4.992319 CGAAATACAACCACACTCCAACTA 59.008 41.667 0.00 0.00 0.00 2.24
112 113 3.813166 CGAAATACAACCACACTCCAACT 59.187 43.478 0.00 0.00 0.00 3.16
113 114 3.058501 CCGAAATACAACCACACTCCAAC 60.059 47.826 0.00 0.00 0.00 3.77
114 115 3.142951 CCGAAATACAACCACACTCCAA 58.857 45.455 0.00 0.00 0.00 3.53
115 116 2.369203 TCCGAAATACAACCACACTCCA 59.631 45.455 0.00 0.00 0.00 3.86
116 117 3.000727 CTCCGAAATACAACCACACTCC 58.999 50.000 0.00 0.00 0.00 3.85
117 118 3.660865 ACTCCGAAATACAACCACACTC 58.339 45.455 0.00 0.00 0.00 3.51
118 119 3.764237 ACTCCGAAATACAACCACACT 57.236 42.857 0.00 0.00 0.00 3.55
119 120 3.562557 ACAACTCCGAAATACAACCACAC 59.437 43.478 0.00 0.00 0.00 3.82
120 121 3.811083 ACAACTCCGAAATACAACCACA 58.189 40.909 0.00 0.00 0.00 4.17
121 122 5.927954 TTACAACTCCGAAATACAACCAC 57.072 39.130 0.00 0.00 0.00 4.16
122 123 5.644636 GGATTACAACTCCGAAATACAACCA 59.355 40.000 0.00 0.00 0.00 3.67
123 124 5.878669 AGGATTACAACTCCGAAATACAACC 59.121 40.000 0.00 0.00 37.88 3.77
124 125 6.183360 CCAGGATTACAACTCCGAAATACAAC 60.183 42.308 0.00 0.00 37.88 3.32
125 126 5.878116 CCAGGATTACAACTCCGAAATACAA 59.122 40.000 0.00 0.00 37.88 2.41
126 127 5.424757 CCAGGATTACAACTCCGAAATACA 58.575 41.667 0.00 0.00 37.88 2.29
127 128 4.272748 GCCAGGATTACAACTCCGAAATAC 59.727 45.833 0.00 0.00 37.88 1.89
128 129 4.448210 GCCAGGATTACAACTCCGAAATA 58.552 43.478 0.00 0.00 37.88 1.40
129 130 3.279434 GCCAGGATTACAACTCCGAAAT 58.721 45.455 0.00 0.00 37.88 2.17
130 131 2.617021 GGCCAGGATTACAACTCCGAAA 60.617 50.000 0.00 0.00 37.88 3.46
131 132 1.065709 GGCCAGGATTACAACTCCGAA 60.066 52.381 0.00 0.00 37.88 4.30
132 133 0.539986 GGCCAGGATTACAACTCCGA 59.460 55.000 0.00 0.00 37.88 4.55
133 134 0.810031 CGGCCAGGATTACAACTCCG 60.810 60.000 2.24 0.00 37.88 4.63
134 135 0.463833 CCGGCCAGGATTACAACTCC 60.464 60.000 2.24 0.00 45.00 3.85
135 136 0.252197 ACCGGCCAGGATTACAACTC 59.748 55.000 18.74 0.00 45.00 3.01
136 137 0.696501 AACCGGCCAGGATTACAACT 59.303 50.000 18.74 0.00 45.00 3.16
137 138 0.808755 CAACCGGCCAGGATTACAAC 59.191 55.000 18.74 0.00 45.00 3.32
138 139 0.693622 TCAACCGGCCAGGATTACAA 59.306 50.000 18.74 0.00 45.00 2.41
139 140 0.916086 ATCAACCGGCCAGGATTACA 59.084 50.000 18.74 0.75 45.00 2.41
140 141 1.308998 CATCAACCGGCCAGGATTAC 58.691 55.000 18.74 0.00 45.00 1.89
141 142 0.182537 CCATCAACCGGCCAGGATTA 59.817 55.000 18.74 1.01 45.00 1.75
142 143 1.076777 CCATCAACCGGCCAGGATT 60.077 57.895 18.74 7.79 45.00 3.01
143 144 2.597340 CCATCAACCGGCCAGGAT 59.403 61.111 18.74 5.67 45.00 3.24
144 145 4.424711 GCCATCAACCGGCCAGGA 62.425 66.667 18.74 3.02 44.22 3.86
150 151 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
151 152 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
152 153 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
162 163 2.630580 AGCCCGGCTTTGAATTAACAAA 59.369 40.909 5.94 0.00 33.89 2.83
163 164 2.230266 GAGCCCGGCTTTGAATTAACAA 59.770 45.455 14.70 0.00 39.88 2.83
164 165 1.816224 GAGCCCGGCTTTGAATTAACA 59.184 47.619 14.70 0.00 39.88 2.41
165 166 2.092323 AGAGCCCGGCTTTGAATTAAC 58.908 47.619 14.70 0.00 39.88 2.01
166 167 2.507407 AGAGCCCGGCTTTGAATTAA 57.493 45.000 14.70 0.00 39.88 1.40
167 168 2.026262 AGAAGAGCCCGGCTTTGAATTA 60.026 45.455 14.70 0.00 39.88 1.40
168 169 1.177401 GAAGAGCCCGGCTTTGAATT 58.823 50.000 14.70 4.04 39.88 2.17
169 170 0.329596 AGAAGAGCCCGGCTTTGAAT 59.670 50.000 14.70 0.00 39.88 2.57
170 171 0.110486 AAGAAGAGCCCGGCTTTGAA 59.890 50.000 14.70 0.00 39.88 2.69
171 172 0.606401 CAAGAAGAGCCCGGCTTTGA 60.606 55.000 14.70 0.00 39.88 2.69
172 173 0.606401 TCAAGAAGAGCCCGGCTTTG 60.606 55.000 14.70 13.91 39.88 2.77
173 174 0.322008 CTCAAGAAGAGCCCGGCTTT 60.322 55.000 14.70 4.65 39.88 3.51
174 175 1.298014 CTCAAGAAGAGCCCGGCTT 59.702 57.895 14.70 0.00 39.88 4.35
175 176 2.985456 CTCAAGAAGAGCCCGGCT 59.015 61.111 13.16 13.16 43.88 5.52
183 184 4.330944 TTGAAACGTAGGCTCAAGAAGA 57.669 40.909 0.00 0.00 30.59 2.87
184 185 5.418310 TTTTGAAACGTAGGCTCAAGAAG 57.582 39.130 0.00 0.00 34.56 2.85
185 186 5.821516 TTTTTGAAACGTAGGCTCAAGAA 57.178 34.783 0.00 0.00 34.56 2.52
209 210 4.663334 GGATGACAGGTAGAAGGGTTTTT 58.337 43.478 0.00 0.00 0.00 1.94
210 211 3.307480 CGGATGACAGGTAGAAGGGTTTT 60.307 47.826 0.00 0.00 0.00 2.43
211 212 2.236395 CGGATGACAGGTAGAAGGGTTT 59.764 50.000 0.00 0.00 0.00 3.27
212 213 1.831736 CGGATGACAGGTAGAAGGGTT 59.168 52.381 0.00 0.00 0.00 4.11
213 214 1.486211 CGGATGACAGGTAGAAGGGT 58.514 55.000 0.00 0.00 0.00 4.34
214 215 0.753262 CCGGATGACAGGTAGAAGGG 59.247 60.000 0.00 0.00 0.00 3.95
215 216 0.105039 GCCGGATGACAGGTAGAAGG 59.895 60.000 5.05 0.00 33.97 3.46
216 217 0.105039 GGCCGGATGACAGGTAGAAG 59.895 60.000 5.05 0.00 33.97 2.85
217 218 0.616395 TGGCCGGATGACAGGTAGAA 60.616 55.000 5.05 0.00 33.97 2.10
218 219 1.001120 TGGCCGGATGACAGGTAGA 59.999 57.895 5.05 0.00 33.97 2.59
219 220 1.144057 GTGGCCGGATGACAGGTAG 59.856 63.158 5.05 0.00 33.97 3.18
220 221 1.610967 TGTGGCCGGATGACAGGTA 60.611 57.895 5.05 0.00 33.97 3.08
221 222 2.927856 TGTGGCCGGATGACAGGT 60.928 61.111 5.05 0.00 33.97 4.00
222 223 2.436646 GTGTGGCCGGATGACAGG 60.437 66.667 5.05 0.00 34.56 4.00
223 224 0.888736 TTTGTGTGGCCGGATGACAG 60.889 55.000 5.05 0.00 0.00 3.51
224 225 0.251121 ATTTGTGTGGCCGGATGACA 60.251 50.000 5.05 0.00 0.00 3.58
225 226 0.887933 AATTTGTGTGGCCGGATGAC 59.112 50.000 5.05 0.00 0.00 3.06
226 227 1.173043 GAATTTGTGTGGCCGGATGA 58.827 50.000 5.05 0.00 0.00 2.92
227 228 0.173255 GGAATTTGTGTGGCCGGATG 59.827 55.000 5.05 0.00 0.00 3.51
228 229 0.039618 AGGAATTTGTGTGGCCGGAT 59.960 50.000 5.05 0.00 0.00 4.18
229 230 0.893270 CAGGAATTTGTGTGGCCGGA 60.893 55.000 5.05 0.00 0.00 5.14
230 231 1.586028 CAGGAATTTGTGTGGCCGG 59.414 57.895 0.00 0.00 0.00 6.13
231 232 1.080569 GCAGGAATTTGTGTGGCCG 60.081 57.895 0.00 0.00 0.00 6.13
232 233 0.609662 ATGCAGGAATTTGTGTGGCC 59.390 50.000 0.00 0.00 0.00 5.36
233 234 1.717194 CATGCAGGAATTTGTGTGGC 58.283 50.000 0.00 0.00 0.00 5.01
234 235 1.274167 AGCATGCAGGAATTTGTGTGG 59.726 47.619 21.98 0.00 0.00 4.17
235 236 2.333926 CAGCATGCAGGAATTTGTGTG 58.666 47.619 21.98 0.11 0.00 3.82
236 237 1.274167 CCAGCATGCAGGAATTTGTGT 59.726 47.619 23.96 0.00 31.97 3.72
237 238 1.546923 TCCAGCATGCAGGAATTTGTG 59.453 47.619 27.82 9.90 31.97 3.33
238 239 1.927487 TCCAGCATGCAGGAATTTGT 58.073 45.000 27.82 0.00 31.97 2.83
239 240 2.418197 CCTTCCAGCATGCAGGAATTTG 60.418 50.000 35.92 26.29 40.11 2.32
240 241 1.829222 CCTTCCAGCATGCAGGAATTT 59.171 47.619 35.92 6.27 40.11 1.82
241 242 1.272872 ACCTTCCAGCATGCAGGAATT 60.273 47.619 35.92 25.65 40.11 2.17
242 243 0.333993 ACCTTCCAGCATGCAGGAAT 59.666 50.000 35.92 23.94 40.11 3.01
243 244 0.322816 GACCTTCCAGCATGCAGGAA 60.323 55.000 34.24 34.24 37.24 3.36
244 245 1.300963 GACCTTCCAGCATGCAGGA 59.699 57.895 26.47 26.47 37.24 3.86
245 246 0.395311 ATGACCTTCCAGCATGCAGG 60.395 55.000 22.47 22.47 40.05 4.85
246 247 0.738975 CATGACCTTCCAGCATGCAG 59.261 55.000 21.98 12.49 33.81 4.41
253 254 1.134367 CAGCATTGCATGACCTTCCAG 59.866 52.381 11.91 0.00 0.00 3.86
318 319 2.911484 CCCTGAGTGAAACCAGATAGC 58.089 52.381 0.00 0.00 37.32 2.97
319 320 2.420687 GGCCCTGAGTGAAACCAGATAG 60.421 54.545 0.00 0.00 37.32 2.08
325 326 0.329596 ATCTGGCCCTGAGTGAAACC 59.670 55.000 0.00 0.00 37.80 3.27
337 338 3.228188 TCATGGGTAAATCATCTGGCC 57.772 47.619 0.00 0.00 0.00 5.36
340 341 7.283807 TCTCACAAATCATGGGTAAATCATCTG 59.716 37.037 0.00 0.00 32.72 2.90
343 344 7.415541 CGTTCTCACAAATCATGGGTAAATCAT 60.416 37.037 0.00 0.00 32.72 2.45
344 345 6.128035 CGTTCTCACAAATCATGGGTAAATCA 60.128 38.462 0.00 0.00 32.72 2.57
352 353 3.748048 ACACTCGTTCTCACAAATCATGG 59.252 43.478 0.00 0.00 0.00 3.66
353 354 4.997905 ACACTCGTTCTCACAAATCATG 57.002 40.909 0.00 0.00 0.00 3.07
357 358 5.989168 TGTCATTACACTCGTTCTCACAAAT 59.011 36.000 0.00 0.00 0.00 2.32
365 366 9.136952 AGTTAAGTAATGTCATTACACTCGTTC 57.863 33.333 28.94 15.93 45.80 3.95
390 391 6.384224 TGCGGGTGAAACGAGTATATATTAG 58.616 40.000 0.00 0.00 38.12 1.73
420 421 9.606631 TGCAAGTTAATTACTCCATTTGTTTTT 57.393 25.926 0.00 0.00 35.54 1.94
421 422 9.606631 TTGCAAGTTAATTACTCCATTTGTTTT 57.393 25.926 0.00 0.00 35.54 2.43
503 504 9.635404 TCTCTCTTTGGTGTTTTATAAAGGAAA 57.365 29.630 0.00 0.00 32.48 3.13
505 506 9.063615 GTTCTCTCTTTGGTGTTTTATAAAGGA 57.936 33.333 0.00 0.00 32.48 3.36
506 507 8.015658 CGTTCTCTCTTTGGTGTTTTATAAAGG 58.984 37.037 0.00 0.00 32.48 3.11
775 782 3.457012 TCTTTTCCTATAAACGGGAGGGG 59.543 47.826 0.00 0.00 32.80 4.79
776 783 4.765813 TCTTTTCCTATAAACGGGAGGG 57.234 45.455 0.00 0.00 32.80 4.30
796 806 1.890174 CCAGCGGGGGATGTTTTTC 59.110 57.895 0.00 0.00 0.00 2.29
797 807 4.111967 CCAGCGGGGGATGTTTTT 57.888 55.556 0.00 0.00 0.00 1.94
993 1016 2.434884 CTGTTCGACATGGCCGCT 60.435 61.111 0.00 0.00 0.00 5.52
1133 1308 5.646360 GGTAGCACAGTAAGCTAAATCCAAA 59.354 40.000 0.00 0.00 45.30 3.28
1183 1358 1.019673 CCTCACTCAAATCATGGCCG 58.980 55.000 0.00 0.00 0.00 6.13
1217 1394 3.118775 CGATTACCTCAGATCACACCCAA 60.119 47.826 0.00 0.00 0.00 4.12
1300 1477 3.411517 CCCCTCCAATCGGCCACT 61.412 66.667 2.24 0.00 0.00 4.00
1311 1488 0.759346 ACATTAGCGATGACCCCTCC 59.241 55.000 9.65 0.00 39.15 4.30
1329 1513 2.292267 CCAGAGCCACAACCATATGAC 58.708 52.381 3.65 0.00 0.00 3.06
1332 1516 2.041620 ACAACCAGAGCCACAACCATAT 59.958 45.455 0.00 0.00 0.00 1.78
1346 1530 2.183478 TCACAGCATACCACAACCAG 57.817 50.000 0.00 0.00 0.00 4.00
1359 1543 5.808042 ATCAACACATAGTGATTCACAGC 57.192 39.130 18.57 0.00 36.74 4.40
1404 1588 3.860641 CACCTGATTGGCAATAAAACCC 58.139 45.455 13.65 0.00 40.22 4.11
1417 1602 2.493278 GCATTTGTACCAGCACCTGATT 59.507 45.455 0.00 0.00 32.44 2.57
1526 1711 2.352503 ATTGTACGTACCGTGACCAC 57.647 50.000 22.43 0.00 41.39 4.16
1709 2097 0.904649 ATGGTGATCAGTTCCTCGCA 59.095 50.000 0.00 0.00 0.00 5.10
1794 2189 4.641396 ACACTTTCATAAGCTGCACAGTA 58.359 39.130 1.02 0.00 34.60 2.74
1917 2315 6.294675 CCTGATGGACATAGAAAGCAACAAAA 60.295 38.462 0.00 0.00 34.57 2.44
2055 2453 7.541162 TGAATGCAAATTGACCAGAAGATTAG 58.459 34.615 0.00 0.00 0.00 1.73
2946 3794 1.490490 ACATAAGGACGGGCATCATGT 59.510 47.619 0.00 0.00 0.00 3.21
3099 3947 8.065407 CGACATCTACTCTGAAGAACATACTAC 58.935 40.741 0.00 0.00 0.00 2.73
3100 3948 7.985752 TCGACATCTACTCTGAAGAACATACTA 59.014 37.037 0.00 0.00 0.00 1.82
3101 3949 6.824196 TCGACATCTACTCTGAAGAACATACT 59.176 38.462 0.00 0.00 0.00 2.12
3141 3989 8.060931 TGCAATAACATATTTGTGGCTTAGAA 57.939 30.769 0.00 0.00 35.83 2.10
3472 6702 5.122239 TGCACAACTTATCATCAGCAGTTAC 59.878 40.000 0.00 0.00 0.00 2.50
3535 6827 6.861065 ACTTAATATTGCCGGTCTTATGTG 57.139 37.500 1.90 0.00 0.00 3.21
3661 8404 8.477256 CAAATTACAATGGTCATATTCCAAGGT 58.523 33.333 1.18 5.22 38.52 3.50
3699 8442 6.152831 GGAGGGAGTATTATTTTGCACAGTTT 59.847 38.462 0.00 0.00 0.00 2.66
3759 10632 6.888632 AGAGCATAGGAAAACAGACAATTGAT 59.111 34.615 13.59 0.00 0.00 2.57
3823 10696 1.626356 ATCGGTGTAGGCATGCTGGT 61.626 55.000 18.92 5.30 0.00 4.00
3899 10772 7.175467 CCAATATTTCTTGCATGCTCCATACTA 59.825 37.037 20.33 3.27 0.00 1.82
3986 10863 7.800092 AGCAGAGGTTATACATCAGAATTTCT 58.200 34.615 0.00 0.00 30.12 2.52
4334 12263 0.798776 CAGCCGGAGTGCTTTTACAG 59.201 55.000 5.05 0.00 40.32 2.74
4335 12264 0.605319 CCAGCCGGAGTGCTTTTACA 60.605 55.000 5.05 0.00 40.32 2.41
4338 12267 1.898574 CACCAGCCGGAGTGCTTTT 60.899 57.895 5.05 0.00 40.32 2.27
4339 12268 2.281761 CACCAGCCGGAGTGCTTT 60.282 61.111 5.05 0.00 40.32 3.51
4340 12269 4.335647 CCACCAGCCGGAGTGCTT 62.336 66.667 5.05 0.00 40.32 3.91
4345 12274 4.335647 AGCAACCACCAGCCGGAG 62.336 66.667 5.05 0.00 35.59 4.63
4346 12275 4.641645 CAGCAACCACCAGCCGGA 62.642 66.667 5.05 0.00 35.59 5.14
4351 12280 1.394266 AAGTTGGCAGCAACCACCAG 61.394 55.000 3.63 0.00 40.19 4.00
4352 12281 0.106469 TAAGTTGGCAGCAACCACCA 60.106 50.000 3.63 0.00 40.19 4.17
4353 12282 1.256812 ATAAGTTGGCAGCAACCACC 58.743 50.000 3.63 0.00 40.19 4.61
4354 12283 4.440112 GGATTATAAGTTGGCAGCAACCAC 60.440 45.833 3.63 0.00 40.19 4.16
4355 12284 3.699038 GGATTATAAGTTGGCAGCAACCA 59.301 43.478 3.63 0.00 38.16 3.67
4356 12285 3.699038 TGGATTATAAGTTGGCAGCAACC 59.301 43.478 3.63 0.00 35.79 3.77
4357 12286 4.981806 TGGATTATAAGTTGGCAGCAAC 57.018 40.909 3.63 0.00 35.43 4.17
4358 12287 4.402155 CCTTGGATTATAAGTTGGCAGCAA 59.598 41.667 3.63 0.00 0.00 3.91
4359 12288 3.953612 CCTTGGATTATAAGTTGGCAGCA 59.046 43.478 3.63 0.00 0.00 4.41
4361 12290 6.357367 ACTACCTTGGATTATAAGTTGGCAG 58.643 40.000 0.00 0.00 0.00 4.85
4362 12291 6.069905 TGACTACCTTGGATTATAAGTTGGCA 60.070 38.462 0.00 0.00 0.00 4.92
4364 12293 6.483640 GCTGACTACCTTGGATTATAAGTTGG 59.516 42.308 0.00 0.00 0.00 3.77
4365 12294 7.225538 CAGCTGACTACCTTGGATTATAAGTTG 59.774 40.741 8.42 0.00 0.00 3.16
4366 12295 7.275920 CAGCTGACTACCTTGGATTATAAGTT 58.724 38.462 8.42 0.00 0.00 2.66
4367 12296 6.686632 GCAGCTGACTACCTTGGATTATAAGT 60.687 42.308 20.43 0.00 0.00 2.24
4368 12297 5.698545 GCAGCTGACTACCTTGGATTATAAG 59.301 44.000 20.43 0.00 0.00 1.73
4369 12298 5.366768 AGCAGCTGACTACCTTGGATTATAA 59.633 40.000 20.43 0.00 0.00 0.98
4370 12299 4.901849 AGCAGCTGACTACCTTGGATTATA 59.098 41.667 20.43 0.00 0.00 0.98
4372 12301 3.107601 AGCAGCTGACTACCTTGGATTA 58.892 45.455 20.43 0.00 0.00 1.75
4373 12302 1.912043 AGCAGCTGACTACCTTGGATT 59.088 47.619 20.43 0.00 0.00 3.01
4377 12306 3.319137 TTACAGCAGCTGACTACCTTG 57.681 47.619 29.70 5.45 35.18 3.61
4424 12354 4.752101 ACCACGAAATTCTTGAGAAGACAG 59.248 41.667 0.73 0.00 37.23 3.51
4735 12667 1.226746 GCGTTGCACTGTTCTACCTT 58.773 50.000 0.00 0.00 0.00 3.50
4799 12731 1.448013 GCACCGAGACCTTACAGGC 60.448 63.158 0.00 0.00 39.63 4.85
4804 12736 1.376543 CGAGTAGCACCGAGACCTTA 58.623 55.000 0.00 0.00 0.00 2.69
4817 12749 1.153745 GGACCTGCACTGCGAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
4908 12925 9.978044 AAATTCGTGTAAATATCTAGTACTCCC 57.022 33.333 0.00 0.00 0.00 4.30
4934 12951 3.131400 GGTCCAACAAGGTAAAGTTGCAA 59.869 43.478 0.00 0.00 42.77 4.08
4944 12961 2.224793 GCCTTCTTAGGTCCAACAAGGT 60.225 50.000 9.49 0.00 44.00 3.50
4966 12983 5.404366 CGAAGTTCAGGTCAAATTCGTTCTA 59.596 40.000 3.32 0.00 44.63 2.10
4967 12984 4.211374 CGAAGTTCAGGTCAAATTCGTTCT 59.789 41.667 3.32 0.00 44.63 3.01
4968 12985 4.455124 CGAAGTTCAGGTCAAATTCGTTC 58.545 43.478 3.32 0.00 44.63 3.95
5006 13023 9.238368 ACAATGAAAATTAGGAACGAGGAAATA 57.762 29.630 0.00 0.00 0.00 1.40
5053 13070 1.735920 GTGAGCTCCGCACTGACTG 60.736 63.158 12.15 0.00 31.72 3.51
5054 13071 2.653702 GTGAGCTCCGCACTGACT 59.346 61.111 12.15 0.00 31.72 3.41
5055 13072 2.749110 TTCGTGAGCTCCGCACTGAC 62.749 60.000 12.15 0.00 32.22 3.51
5056 13073 1.877576 ATTCGTGAGCTCCGCACTGA 61.878 55.000 12.15 3.23 32.22 3.41
5057 13074 1.016130 AATTCGTGAGCTCCGCACTG 61.016 55.000 12.15 0.89 32.22 3.66
5058 13075 0.320771 AAATTCGTGAGCTCCGCACT 60.321 50.000 12.15 0.00 32.22 4.40
5059 13076 0.095417 GAAATTCGTGAGCTCCGCAC 59.905 55.000 12.15 2.25 0.00 5.34
5060 13077 0.320334 TGAAATTCGTGAGCTCCGCA 60.320 50.000 12.15 5.32 0.00 5.69
5061 13078 0.796312 TTGAAATTCGTGAGCTCCGC 59.204 50.000 12.15 3.13 0.00 5.54
5062 13079 2.069273 ACTTGAAATTCGTGAGCTCCG 58.931 47.619 12.15 14.33 0.00 4.63
5063 13080 4.495422 TCTACTTGAAATTCGTGAGCTCC 58.505 43.478 12.15 1.40 0.00 4.70
5064 13081 6.074569 GCTATCTACTTGAAATTCGTGAGCTC 60.075 42.308 6.82 6.82 0.00 4.09
5065 13082 5.751028 GCTATCTACTTGAAATTCGTGAGCT 59.249 40.000 0.00 0.00 0.00 4.09
5066 13083 5.751028 AGCTATCTACTTGAAATTCGTGAGC 59.249 40.000 0.00 0.00 0.00 4.26
5067 13084 6.141527 CGAGCTATCTACTTGAAATTCGTGAG 59.858 42.308 0.00 0.00 0.00 3.51
5068 13085 5.971792 CGAGCTATCTACTTGAAATTCGTGA 59.028 40.000 0.00 0.00 0.00 4.35
5069 13086 5.174035 CCGAGCTATCTACTTGAAATTCGTG 59.826 44.000 0.00 0.00 0.00 4.35
5070 13087 5.163540 ACCGAGCTATCTACTTGAAATTCGT 60.164 40.000 0.00 0.00 0.00 3.85
5071 13088 5.282510 ACCGAGCTATCTACTTGAAATTCG 58.717 41.667 0.00 0.00 0.00 3.34
5072 13089 6.757010 TGAACCGAGCTATCTACTTGAAATTC 59.243 38.462 0.00 0.00 0.00 2.17
5073 13090 6.640518 TGAACCGAGCTATCTACTTGAAATT 58.359 36.000 0.00 0.00 0.00 1.82
5074 13091 6.222038 TGAACCGAGCTATCTACTTGAAAT 57.778 37.500 0.00 0.00 0.00 2.17
5075 13092 5.654603 TGAACCGAGCTATCTACTTGAAA 57.345 39.130 0.00 0.00 0.00 2.69
5076 13093 5.854010 ATGAACCGAGCTATCTACTTGAA 57.146 39.130 0.00 0.00 0.00 2.69
5077 13094 5.854010 AATGAACCGAGCTATCTACTTGA 57.146 39.130 0.00 0.00 0.00 3.02
5078 13095 6.018669 GGAAAATGAACCGAGCTATCTACTTG 60.019 42.308 0.00 0.00 0.00 3.16
5079 13096 6.049790 GGAAAATGAACCGAGCTATCTACTT 58.950 40.000 0.00 0.00 0.00 2.24
5080 13097 5.453480 GGGAAAATGAACCGAGCTATCTACT 60.453 44.000 0.00 0.00 0.00 2.57
5081 13098 4.750598 GGGAAAATGAACCGAGCTATCTAC 59.249 45.833 0.00 0.00 0.00 2.59
5101 13121 1.600023 CACAAAAGGCAGTAACGGGA 58.400 50.000 0.00 0.00 0.00 5.14
5150 13170 8.960591 CCCTGTTAGATTTAGACAATTCAACAT 58.039 33.333 0.00 0.00 0.00 2.71
5151 13171 8.160765 TCCCTGTTAGATTTAGACAATTCAACA 58.839 33.333 0.00 0.00 0.00 3.33
5152 13172 8.561738 TCCCTGTTAGATTTAGACAATTCAAC 57.438 34.615 0.00 0.00 0.00 3.18
5153 13173 9.581289 TTTCCCTGTTAGATTTAGACAATTCAA 57.419 29.630 0.00 0.00 0.00 2.69
5213 13264 1.692519 AGGTACAGACGAAAGCAAGGT 59.307 47.619 0.00 0.00 0.00 3.50
5231 13282 3.032459 GGAAGAAGGTAGGTAGGTGAGG 58.968 54.545 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.