Multiple sequence alignment - TraesCS6D01G262000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G262000 chr6D 100.000 1619 0 0 874 2492 370041368 370042986 0.000000e+00 2990.0
1 TraesCS6D01G262000 chr6D 100.000 235 0 0 1 235 370040495 370040729 3.810000e-118 435.0
2 TraesCS6D01G262000 chr6D 87.283 173 16 4 1747 1919 224751052 224751218 2.530000e-45 193.0
3 TraesCS6D01G262000 chr6A 95.108 1574 49 7 875 2431 511038339 511039901 0.000000e+00 2455.0
4 TraesCS6D01G262000 chr6B 95.300 1085 27 9 875 1950 555340957 555342026 0.000000e+00 1700.0
5 TraesCS6D01G262000 chr6B 96.444 225 8 0 2205 2429 555342046 555342270 3.030000e-99 372.0
6 TraesCS6D01G262000 chr6B 87.793 213 24 2 24 235 555340145 555340356 5.320000e-62 248.0
7 TraesCS6D01G262000 chr2A 88.889 171 15 4 1751 1920 451810542 451810375 9.030000e-50 207.0
8 TraesCS6D01G262000 chr2A 86.592 179 16 5 1747 1920 155591080 155590905 9.100000e-45 191.0
9 TraesCS6D01G262000 chr2A 78.528 163 20 10 76 234 533046614 533046463 2.640000e-15 93.5
10 TraesCS6D01G262000 chr2D 88.000 175 17 3 1747 1920 342099803 342099632 1.170000e-48 204.0
11 TraesCS6D01G262000 chr2B 88.000 175 17 3 1747 1920 407236346 407236175 1.170000e-48 204.0
12 TraesCS6D01G262000 chr5D 87.356 174 16 5 1747 1918 13715043 13715212 7.030000e-46 195.0
13 TraesCS6D01G262000 chr5D 92.982 57 4 0 2436 2492 373948565 373948509 1.590000e-12 84.2
14 TraesCS6D01G262000 chr1D 86.782 174 19 4 1747 1919 250738613 250738443 9.100000e-45 191.0
15 TraesCS6D01G262000 chr5A 86.250 160 14 7 77 235 480039256 480039408 1.530000e-37 167.0
16 TraesCS6D01G262000 chr3D 84.795 171 11 9 30 195 61173022 61173182 9.230000e-35 158.0
17 TraesCS6D01G262000 chr3D 93.443 61 4 0 2432 2492 289984292 289984232 9.490000e-15 91.6
18 TraesCS6D01G262000 chr3D 90.323 62 6 0 2431 2492 410990656 410990717 5.710000e-12 82.4
19 TraesCS6D01G262000 chr7D 98.113 53 1 0 2440 2492 520410669 520410617 2.640000e-15 93.5
20 TraesCS6D01G262000 chr7D 96.226 53 2 0 2440 2492 510887216 510887268 1.230000e-13 87.9
21 TraesCS6D01G262000 chr7D 83.529 85 10 3 2408 2492 562184920 562185000 2.660000e-10 76.8
22 TraesCS6D01G262000 chr5B 96.226 53 2 0 2440 2492 108983519 108983571 1.230000e-13 87.9
23 TraesCS6D01G262000 chr5B 96.226 53 2 0 2440 2492 648279540 648279488 1.230000e-13 87.9
24 TraesCS6D01G262000 chr5B 94.545 55 3 0 2438 2492 698452074 698452128 4.420000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G262000 chr6D 370040495 370042986 2491 False 1712.500000 2990 100.000 1 2492 2 chr6D.!!$F2 2491
1 TraesCS6D01G262000 chr6A 511038339 511039901 1562 False 2455.000000 2455 95.108 875 2431 1 chr6A.!!$F1 1556
2 TraesCS6D01G262000 chr6B 555340145 555342270 2125 False 773.333333 1700 93.179 24 2429 3 chr6B.!!$F1 2405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.172803 GCCAAATGGAAGAGCAGCAG 59.827 55.0 2.98 0.0 37.39 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2013 0.037734 AATCCCCGGTTCACTTGTCC 59.962 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.058160 GGGGACGAGGACGACGAA 61.058 66.667 0.00 0.00 42.66 3.85
20 21 2.484203 GGGACGAGGACGACGAAG 59.516 66.667 0.00 0.00 42.66 3.79
21 22 2.484203 GGACGAGGACGACGAAGG 59.516 66.667 0.00 0.00 42.66 3.46
22 23 2.484203 GACGAGGACGACGAAGGG 59.516 66.667 0.00 0.00 42.66 3.95
50 51 0.172803 GCCAAATGGAAGAGCAGCAG 59.827 55.000 2.98 0.00 37.39 4.24
73 74 1.820090 GCTCCTACTACCGGATCTGCT 60.820 57.143 9.46 0.00 0.00 4.24
74 75 2.552591 GCTCCTACTACCGGATCTGCTA 60.553 54.545 9.46 0.00 0.00 3.49
75 76 3.075884 CTCCTACTACCGGATCTGCTAC 58.924 54.545 9.46 0.00 0.00 3.58
92 93 1.950973 TACCGCCGCTTGCACAGATA 61.951 55.000 0.00 0.00 41.33 1.98
98 99 2.283298 CCGCTTGCACAGATATGAGTT 58.717 47.619 0.00 0.00 0.00 3.01
99 100 2.031314 CCGCTTGCACAGATATGAGTTG 59.969 50.000 0.00 0.00 0.00 3.16
118 120 2.816083 CGCCGCCGGTGTTAATGA 60.816 61.111 15.14 0.00 0.00 2.57
200 202 1.165270 GCCTAGATTTGGCGTTGTGT 58.835 50.000 0.00 0.00 41.03 3.72
222 224 2.598632 CGCGCCCGATTTCCATCTC 61.599 63.158 0.00 0.00 36.29 2.75
223 225 1.227674 GCGCCCGATTTCCATCTCT 60.228 57.895 0.00 0.00 0.00 3.10
1066 1068 1.719709 GTCAAAATCCGCCGCCTAC 59.280 57.895 0.00 0.00 0.00 3.18
1131 1133 4.332543 TCCTCCTGCCCGGACCTT 62.333 66.667 0.73 0.00 36.69 3.50
1534 1543 3.911661 ACAGAGACTGCATTTCTTTGC 57.088 42.857 13.19 0.00 43.07 3.68
1538 1547 0.968405 GACTGCATTTCTTTGCCCCA 59.032 50.000 0.00 0.00 42.06 4.96
1551 1565 1.448540 GCCCCATCGCATCTATCCG 60.449 63.158 0.00 0.00 0.00 4.18
1578 1592 5.817296 TGTCTGTGGCAATCTGTTATCATAC 59.183 40.000 0.00 0.00 0.00 2.39
1579 1593 6.051717 GTCTGTGGCAATCTGTTATCATACT 58.948 40.000 0.00 0.00 0.00 2.12
1580 1594 7.147742 TGTCTGTGGCAATCTGTTATCATACTA 60.148 37.037 0.00 0.00 0.00 1.82
1600 1614 9.469807 CATACTATCATTACTCTGAACTTGTCC 57.530 37.037 0.00 0.00 0.00 4.02
1684 1698 0.040958 CCTGTTTCTGCTGCGTTCAC 60.041 55.000 0.00 0.00 0.00 3.18
1688 1702 1.846175 GTTTCTGCTGCGTTCACAAAC 59.154 47.619 0.00 0.00 0.00 2.93
1711 1725 5.583061 ACGAAAATTCCGTGCTATATTGTCA 59.417 36.000 5.24 0.00 38.97 3.58
1729 1744 5.794687 TGTCAGGTTAAATAACAGCGATG 57.205 39.130 0.00 0.00 37.92 3.84
1732 1747 6.257849 TGTCAGGTTAAATAACAGCGATGATC 59.742 38.462 8.12 0.00 37.92 2.92
1787 1804 0.103208 ATCGGCATCTCGGTCAGTTC 59.897 55.000 0.00 0.00 0.00 3.01
1804 1821 2.906389 AGTTCATTGCTACTCAGGTGGA 59.094 45.455 0.00 0.00 0.00 4.02
1888 1905 2.534298 CTACTCAGCACCTGAACGATG 58.466 52.381 0.00 0.00 40.18 3.84
1889 1906 0.671781 ACTCAGCACCTGAACGATGC 60.672 55.000 0.00 0.00 40.18 3.91
1936 1953 7.764443 TGAACATTGCCTACTAGTGTAAATCTC 59.236 37.037 5.39 1.31 0.00 2.75
1959 1976 9.060347 TCTCGAAAGTTACTACTAGTTCTTTCA 57.940 33.333 25.63 18.57 41.82 2.69
1975 1992 5.276461 TCTTTCAGTCAGTAAAGCTGTCA 57.724 39.130 0.00 0.00 45.23 3.58
1995 2012 0.678950 GGCTAAGCTTTGCCAACCAA 59.321 50.000 36.80 3.41 46.27 3.67
1996 2013 1.337167 GGCTAAGCTTTGCCAACCAAG 60.337 52.381 36.80 13.80 46.27 3.61
2048 2065 7.451732 AGAGCTGAATGAAGTTCTATGCATAT 58.548 34.615 6.92 0.00 36.14 1.78
2185 2202 9.188588 GCCTATTCAATCAAATTATGTGTCATG 57.811 33.333 0.00 0.00 0.00 3.07
2195 2212 7.122055 TCAAATTATGTGTCATGAAGGTAACCC 59.878 37.037 0.00 0.00 37.17 4.11
2292 2316 1.880819 GCCAACTGATGCCCCTTGTG 61.881 60.000 0.00 0.00 0.00 3.33
2346 2370 2.366266 ACATTTTGTGGAGTGCATGCTT 59.634 40.909 20.33 7.15 0.00 3.91
2366 2390 1.651987 TTATGGTTCTACGCAGCTGC 58.348 50.000 29.12 29.12 37.78 5.25
2432 2456 5.002464 GCATTTGCAGGAACATGATAACT 57.998 39.130 0.00 0.00 41.59 2.24
2433 2457 5.413499 GCATTTGCAGGAACATGATAACTT 58.587 37.500 0.00 0.00 41.59 2.66
2434 2458 5.290158 GCATTTGCAGGAACATGATAACTTG 59.710 40.000 0.00 0.00 41.59 3.16
2435 2459 6.623486 CATTTGCAGGAACATGATAACTTGA 58.377 36.000 0.00 0.00 0.00 3.02
2436 2460 6.839124 TTTGCAGGAACATGATAACTTGAT 57.161 33.333 0.00 0.00 0.00 2.57
2437 2461 7.936496 TTTGCAGGAACATGATAACTTGATA 57.064 32.000 0.00 0.00 0.00 2.15
2438 2462 7.936496 TTGCAGGAACATGATAACTTGATAA 57.064 32.000 0.00 0.00 0.00 1.75
2439 2463 7.558161 TGCAGGAACATGATAACTTGATAAG 57.442 36.000 0.00 0.00 0.00 1.73
2440 2464 7.112122 TGCAGGAACATGATAACTTGATAAGT 58.888 34.615 0.00 0.00 45.46 2.24
2441 2465 8.264347 TGCAGGAACATGATAACTTGATAAGTA 58.736 33.333 0.00 0.00 41.91 2.24
2442 2466 8.552034 GCAGGAACATGATAACTTGATAAGTAC 58.448 37.037 0.00 0.00 41.91 2.73
2443 2467 9.823647 CAGGAACATGATAACTTGATAAGTACT 57.176 33.333 0.00 0.00 41.91 2.73
2445 2469 9.262358 GGAACATGATAACTTGATAAGTACTCC 57.738 37.037 0.00 0.00 41.91 3.85
2446 2470 9.262358 GAACATGATAACTTGATAAGTACTCCC 57.738 37.037 0.00 0.00 41.91 4.30
2447 2471 8.554490 ACATGATAACTTGATAAGTACTCCCT 57.446 34.615 0.00 0.00 41.91 4.20
2448 2472 8.643324 ACATGATAACTTGATAAGTACTCCCTC 58.357 37.037 0.00 0.00 41.91 4.30
2449 2473 7.598759 TGATAACTTGATAAGTACTCCCTCC 57.401 40.000 0.00 0.00 41.91 4.30
2450 2474 6.264744 TGATAACTTGATAAGTACTCCCTCCG 59.735 42.308 0.00 0.00 41.91 4.63
2451 2475 2.694109 ACTTGATAAGTACTCCCTCCGC 59.306 50.000 0.00 0.00 40.69 5.54
2452 2476 2.750141 TGATAAGTACTCCCTCCGCT 57.250 50.000 0.00 0.00 0.00 5.52
2453 2477 2.584236 TGATAAGTACTCCCTCCGCTC 58.416 52.381 0.00 0.00 0.00 5.03
2454 2478 1.887854 GATAAGTACTCCCTCCGCTCC 59.112 57.143 0.00 0.00 0.00 4.70
2455 2479 0.106318 TAAGTACTCCCTCCGCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
2456 2480 2.043248 GTACTCCCTCCGCTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
2457 2481 1.684734 GTACTCCCTCCGCTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
2458 2482 1.079621 TACTCCCTCCGCTCCCAAA 59.920 57.895 0.00 0.00 0.00 3.28
2459 2483 0.326238 TACTCCCTCCGCTCCCAAAT 60.326 55.000 0.00 0.00 0.00 2.32
2460 2484 1.153086 CTCCCTCCGCTCCCAAATG 60.153 63.158 0.00 0.00 0.00 2.32
2461 2485 1.915078 CTCCCTCCGCTCCCAAATGT 61.915 60.000 0.00 0.00 0.00 2.71
2462 2486 0.619255 TCCCTCCGCTCCCAAATGTA 60.619 55.000 0.00 0.00 0.00 2.29
2463 2487 0.254747 CCCTCCGCTCCCAAATGTAA 59.745 55.000 0.00 0.00 0.00 2.41
2464 2488 1.668419 CCTCCGCTCCCAAATGTAAG 58.332 55.000 0.00 0.00 0.00 2.34
2465 2489 1.065418 CCTCCGCTCCCAAATGTAAGT 60.065 52.381 0.00 0.00 0.00 2.24
2466 2490 2.280628 CTCCGCTCCCAAATGTAAGTC 58.719 52.381 0.00 0.00 0.00 3.01
2467 2491 1.906574 TCCGCTCCCAAATGTAAGTCT 59.093 47.619 0.00 0.00 0.00 3.24
2468 2492 2.304761 TCCGCTCCCAAATGTAAGTCTT 59.695 45.455 0.00 0.00 0.00 3.01
2469 2493 3.081804 CCGCTCCCAAATGTAAGTCTTT 58.918 45.455 0.00 0.00 0.00 2.52
2470 2494 3.506067 CCGCTCCCAAATGTAAGTCTTTT 59.494 43.478 0.00 0.00 0.00 2.27
2471 2495 4.022329 CCGCTCCCAAATGTAAGTCTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
2472 2496 5.182380 CCGCTCCCAAATGTAAGTCTTTTTA 59.818 40.000 0.00 0.00 0.00 1.52
2473 2497 6.314784 CGCTCCCAAATGTAAGTCTTTTTAG 58.685 40.000 0.00 0.00 0.00 1.85
2474 2498 6.148811 CGCTCCCAAATGTAAGTCTTTTTAGA 59.851 38.462 0.00 0.00 0.00 2.10
2475 2499 7.530863 GCTCCCAAATGTAAGTCTTTTTAGAG 58.469 38.462 0.00 0.00 0.00 2.43
2476 2500 7.390718 GCTCCCAAATGTAAGTCTTTTTAGAGA 59.609 37.037 0.00 0.00 30.21 3.10
2477 2501 9.454859 CTCCCAAATGTAAGTCTTTTTAGAGAT 57.545 33.333 0.00 0.00 30.21 2.75
2478 2502 9.807921 TCCCAAATGTAAGTCTTTTTAGAGATT 57.192 29.630 0.00 0.00 0.00 2.40
2489 2513 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
2490 2514 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
2491 2515 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.048941 CTTCGTCGTCCTCGTCCCC 62.049 68.421 0.00 0.00 38.33 4.81
3 4 2.484203 CTTCGTCGTCCTCGTCCC 59.516 66.667 0.00 0.00 38.33 4.46
4 5 2.484203 CCTTCGTCGTCCTCGTCC 59.516 66.667 0.00 0.00 38.33 4.79
5 6 2.484203 CCCTTCGTCGTCCTCGTC 59.516 66.667 0.00 0.00 38.33 4.20
6 7 3.060615 CCCCTTCGTCGTCCTCGT 61.061 66.667 0.00 0.00 38.33 4.18
7 8 3.823330 CCCCCTTCGTCGTCCTCG 61.823 72.222 0.00 0.00 38.55 4.63
27 28 1.136305 CTGCTCTTCCATTTGGCCATG 59.864 52.381 6.09 1.81 34.44 3.66
29 30 1.252904 GCTGCTCTTCCATTTGGCCA 61.253 55.000 0.00 0.00 34.44 5.36
50 51 0.599060 GATCCGGTAGTAGGAGCTGC 59.401 60.000 0.00 0.00 40.73 5.25
77 78 0.585357 CTCATATCTGTGCAAGCGGC 59.415 55.000 0.00 0.00 45.13 6.53
112 114 4.362677 ACCACTTCCTCTAGCCTCATTAA 58.637 43.478 0.00 0.00 0.00 1.40
114 116 2.839228 ACCACTTCCTCTAGCCTCATT 58.161 47.619 0.00 0.00 0.00 2.57
115 117 2.503356 CAACCACTTCCTCTAGCCTCAT 59.497 50.000 0.00 0.00 0.00 2.90
118 120 1.903183 GACAACCACTTCCTCTAGCCT 59.097 52.381 0.00 0.00 0.00 4.58
140 142 2.040813 ACTCGGTCACCACTACCTCTAA 59.959 50.000 0.00 0.00 34.66 2.10
946 948 2.933878 TTCGGCAAGTGACACGCCTT 62.934 55.000 18.65 0.00 43.95 4.35
952 954 0.320421 GGTAGCTTCGGCAAGTGACA 60.320 55.000 0.00 0.00 44.74 3.58
953 955 1.019805 GGGTAGCTTCGGCAAGTGAC 61.020 60.000 0.00 0.00 44.74 3.67
1131 1133 2.401766 GGCGAACTCGGACTCGGTA 61.402 63.158 0.69 0.00 40.23 4.02
1534 1543 0.321671 AACGGATAGATGCGATGGGG 59.678 55.000 10.54 0.00 44.78 4.96
1538 1547 3.181475 ACAGACAAACGGATAGATGCGAT 60.181 43.478 10.54 0.00 44.78 4.58
1551 1565 3.715628 AACAGATTGCCACAGACAAAC 57.284 42.857 0.00 0.00 0.00 2.93
1578 1592 6.473778 CACGGACAAGTTCAGAGTAATGATAG 59.526 42.308 0.00 0.00 0.00 2.08
1579 1593 6.071560 ACACGGACAAGTTCAGAGTAATGATA 60.072 38.462 0.00 0.00 0.00 2.15
1580 1594 5.171476 CACGGACAAGTTCAGAGTAATGAT 58.829 41.667 0.00 0.00 0.00 2.45
1587 1601 3.736252 CACTAACACGGACAAGTTCAGAG 59.264 47.826 0.00 0.00 0.00 3.35
1600 1614 3.579709 AGCATTCTCAGTCACTAACACG 58.420 45.455 0.00 0.00 0.00 4.49
1684 1698 6.745450 ACAATATAGCACGGAATTTTCGTTTG 59.255 34.615 0.00 4.47 38.94 2.93
1688 1702 6.043327 TGACAATATAGCACGGAATTTTCG 57.957 37.500 0.00 0.00 0.00 3.46
1711 1725 5.760253 CAGGATCATCGCTGTTATTTAACCT 59.240 40.000 0.00 0.00 35.37 3.50
1729 1744 2.231215 ACATTAGCAGCGACAGGATC 57.769 50.000 0.00 0.00 0.00 3.36
1732 1747 1.009829 GGAACATTAGCAGCGACAGG 58.990 55.000 0.00 0.00 0.00 4.00
1741 1756 3.568007 TGGCCGATATTTGGAACATTAGC 59.432 43.478 0.00 0.00 39.30 3.09
1787 1804 3.201290 GTGATCCACCTGAGTAGCAATG 58.799 50.000 0.00 0.00 0.00 2.82
1804 1821 4.765856 AGTTACTATCGGCTATTCGGTGAT 59.234 41.667 0.00 0.00 0.00 3.06
1839 1856 2.565841 AGGCGAATCAGCAGTTAATCC 58.434 47.619 0.00 0.00 39.27 3.01
1936 1953 9.116054 GACTGAAAGAACTAGTAGTAACTTTCG 57.884 37.037 30.81 28.16 44.64 3.46
1995 2012 0.840722 ATCCCCGGTTCACTTGTCCT 60.841 55.000 0.00 0.00 0.00 3.85
1996 2013 0.037734 AATCCCCGGTTCACTTGTCC 59.962 55.000 0.00 0.00 0.00 4.02
2059 2076 7.443272 GGTACTATGATGGTGTTATGGTTTACC 59.557 40.741 0.00 0.00 0.00 2.85
2195 2212 6.216569 ACAATCACTGTACACTGTTAGACAG 58.783 40.000 6.54 6.54 43.70 3.51
2288 2312 6.331845 GGTGATGCATGTTGAATATTCACAA 58.668 36.000 17.76 9.40 36.83 3.33
2292 2316 5.779529 AGGGTGATGCATGTTGAATATTC 57.220 39.130 2.46 8.60 0.00 1.75
2346 2370 2.006888 GCAGCTGCGTAGAACCATAAA 58.993 47.619 25.23 0.00 0.00 1.40
2366 2390 1.215647 GGACCCTAGCAGTGTCACG 59.784 63.158 0.00 0.00 0.00 4.35
2386 2410 2.814919 AGGCTATCTTGATACCGTCTCG 59.185 50.000 0.00 0.00 0.00 4.04
2431 2455 2.959707 AGCGGAGGGAGTACTTATCAAG 59.040 50.000 0.00 0.00 0.00 3.02
2432 2456 2.957006 GAGCGGAGGGAGTACTTATCAA 59.043 50.000 0.00 0.00 0.00 2.57
2433 2457 2.584236 GAGCGGAGGGAGTACTTATCA 58.416 52.381 0.00 0.00 0.00 2.15
2434 2458 1.887854 GGAGCGGAGGGAGTACTTATC 59.112 57.143 0.00 0.00 0.00 1.75
2435 2459 1.480869 GGGAGCGGAGGGAGTACTTAT 60.481 57.143 0.00 0.00 0.00 1.73
2436 2460 0.106318 GGGAGCGGAGGGAGTACTTA 60.106 60.000 0.00 0.00 0.00 2.24
2437 2461 1.381463 GGGAGCGGAGGGAGTACTT 60.381 63.158 0.00 0.00 0.00 2.24
2438 2462 2.164332 TTGGGAGCGGAGGGAGTACT 62.164 60.000 0.00 0.00 0.00 2.73
2439 2463 1.262640 TTTGGGAGCGGAGGGAGTAC 61.263 60.000 0.00 0.00 0.00 2.73
2440 2464 0.326238 ATTTGGGAGCGGAGGGAGTA 60.326 55.000 0.00 0.00 0.00 2.59
2441 2465 1.616628 ATTTGGGAGCGGAGGGAGT 60.617 57.895 0.00 0.00 0.00 3.85
2442 2466 1.153086 CATTTGGGAGCGGAGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
2443 2467 0.619255 TACATTTGGGAGCGGAGGGA 60.619 55.000 0.00 0.00 0.00 4.20
2444 2468 0.254747 TTACATTTGGGAGCGGAGGG 59.745 55.000 0.00 0.00 0.00 4.30
2445 2469 1.065418 ACTTACATTTGGGAGCGGAGG 60.065 52.381 0.00 0.00 0.00 4.30
2446 2470 2.093447 AGACTTACATTTGGGAGCGGAG 60.093 50.000 0.00 0.00 0.00 4.63
2447 2471 1.906574 AGACTTACATTTGGGAGCGGA 59.093 47.619 0.00 0.00 0.00 5.54
2448 2472 2.403252 AGACTTACATTTGGGAGCGG 57.597 50.000 0.00 0.00 0.00 5.52
2449 2473 4.766404 AAAAGACTTACATTTGGGAGCG 57.234 40.909 0.00 0.00 0.00 5.03
2450 2474 7.390718 TCTCTAAAAAGACTTACATTTGGGAGC 59.609 37.037 0.00 0.00 0.00 4.70
2451 2475 8.848474 TCTCTAAAAAGACTTACATTTGGGAG 57.152 34.615 0.00 0.19 0.00 4.30
2452 2476 9.807921 AATCTCTAAAAAGACTTACATTTGGGA 57.192 29.630 0.00 0.00 0.00 4.37
2463 2487 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
2464 2488 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
2465 2489 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.