Multiple sequence alignment - TraesCS6D01G261400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G261400 chr6D 100.000 5217 0 0 1 5217 369665356 369660140 0.000000e+00 9635.0
1 TraesCS6D01G261400 chr6A 91.179 2698 111 52 190 2795 510868889 510866227 0.000000e+00 3546.0
2 TraesCS6D01G261400 chr6A 94.809 2254 86 13 2964 5196 510866223 510863980 0.000000e+00 3485.0
3 TraesCS6D01G261400 chr6B 95.223 2219 86 9 2996 5210 555294497 555292295 0.000000e+00 3493.0
4 TraesCS6D01G261400 chr6B 89.492 1732 78 37 187 1897 555297190 555295542 0.000000e+00 2095.0
5 TraesCS6D01G261400 chr6B 91.117 394 20 6 2384 2775 555294984 555294604 2.150000e-143 520.0
6 TraesCS6D01G261400 chr6B 75.434 346 49 17 1916 2237 555295552 555295219 9.110000e-28 135.0
7 TraesCS6D01G261400 chr6B 97.143 35 1 0 1107 1141 706916469 706916503 5.640000e-05 60.2
8 TraesCS6D01G261400 chr3B 92.135 178 8 5 8 180 798685964 798686140 4.030000e-61 246.0
9 TraesCS6D01G261400 chr7A 90.217 184 15 3 3 183 29856414 29856597 2.430000e-58 237.0
10 TraesCS6D01G261400 chr7D 89.305 187 16 3 1 183 586785979 586786165 1.130000e-56 231.0
11 TraesCS6D01G261400 chr7D 87.166 187 17 6 1 183 634586502 634586319 6.850000e-49 206.0
12 TraesCS6D01G261400 chr4D 90.449 178 12 5 8 181 422810949 422811125 4.060000e-56 230.0
13 TraesCS6D01G261400 chr7B 89.773 176 14 3 10 181 203018197 203018022 6.800000e-54 222.0
14 TraesCS6D01G261400 chr2B 88.298 188 16 4 1 183 385190770 385190956 2.450000e-53 220.0
15 TraesCS6D01G261400 chrUn 88.202 178 17 2 10 183 35060139 35059962 5.290000e-50 209.0
16 TraesCS6D01G261400 chrUn 95.122 41 2 0 1107 1147 377500512 377500472 1.210000e-06 65.8
17 TraesCS6D01G261400 chr2D 86.096 187 22 3 1 183 130805858 130806044 1.150000e-46 198.0
18 TraesCS6D01G261400 chr5A 79.412 238 41 7 3406 3636 370097210 370096974 1.500000e-35 161.0
19 TraesCS6D01G261400 chr5A 78.151 238 44 7 3406 3636 370042568 370042804 1.510000e-30 145.0
20 TraesCS6D01G261400 chr5A 95.122 41 2 0 1107 1147 689184300 689184340 1.210000e-06 65.8
21 TraesCS6D01G261400 chr5D 78.992 238 42 7 3406 3636 278467571 278467807 6.990000e-34 156.0
22 TraesCS6D01G261400 chr5B 78.541 233 42 7 3406 3631 316623388 316623619 4.210000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G261400 chr6D 369660140 369665356 5216 True 9635.00 9635 100.0000 1 5217 1 chr6D.!!$R1 5216
1 TraesCS6D01G261400 chr6A 510863980 510868889 4909 True 3515.50 3546 92.9940 190 5196 2 chr6A.!!$R1 5006
2 TraesCS6D01G261400 chr6B 555292295 555297190 4895 True 1560.75 3493 87.8165 187 5210 4 chr6B.!!$R1 5023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1024 0.105607 GGGTGTAGGAGTAGGAGGGG 60.106 65.0 0.00 0.00 0.00 4.79 F
2010 2090 0.927537 TAATTTGGCGTGCTCGATCG 59.072 50.0 13.13 9.36 39.71 3.69 F
2216 2320 0.250295 TCACCTTTTCGGACTGGCAG 60.250 55.0 14.16 14.16 36.31 4.85 F
2961 3230 0.315568 AAGTCTCAGTCGACTGCACC 59.684 55.0 35.48 24.63 43.14 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2305 0.169672 CATGCTGCCAGTCCGAAAAG 59.830 55.000 0.00 0.00 0.00 2.27 R
2945 3214 0.827925 AAGGGTGCAGTCGACTGAGA 60.828 55.000 42.03 27.13 46.59 3.27 R
3705 3996 1.406539 CATTCCCATTTCCAAGAGCGG 59.593 52.381 0.00 0.00 0.00 5.52 R
4628 4922 0.322187 AGGTTGCGCCGGTCTATTTT 60.322 50.000 4.18 0.00 43.70 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.114616 CGGCCGCGGATCATCATC 61.115 66.667 33.48 8.16 0.00 2.92
36 37 3.114616 GGCCGCGGATCATCATCG 61.115 66.667 33.48 0.00 0.00 3.84
37 38 2.356313 GCCGCGGATCATCATCGT 60.356 61.111 33.48 0.00 0.00 3.73
38 39 1.956170 GCCGCGGATCATCATCGTT 60.956 57.895 33.48 0.00 0.00 3.85
39 40 1.498865 GCCGCGGATCATCATCGTTT 61.499 55.000 33.48 0.00 0.00 3.60
40 41 0.937304 CCGCGGATCATCATCGTTTT 59.063 50.000 24.07 0.00 0.00 2.43
41 42 1.070577 CCGCGGATCATCATCGTTTTC 60.071 52.381 24.07 0.00 0.00 2.29
42 43 1.395944 CGCGGATCATCATCGTTTTCG 60.396 52.381 0.00 0.00 45.64 3.46
43 44 1.593006 GCGGATCATCATCGTTTTCGT 59.407 47.619 0.00 0.00 44.46 3.85
44 45 2.030457 GCGGATCATCATCGTTTTCGTT 59.970 45.455 0.00 0.00 44.46 3.85
45 46 3.597324 CGGATCATCATCGTTTTCGTTG 58.403 45.455 0.00 0.00 44.46 4.10
51 52 2.949142 TCATCGTTTTCGTTGATCCGA 58.051 42.857 0.00 0.00 43.89 4.55
52 53 2.664568 TCATCGTTTTCGTTGATCCGAC 59.335 45.455 0.00 0.00 43.89 4.79
53 54 2.427232 TCGTTTTCGTTGATCCGACT 57.573 45.000 0.00 0.00 44.46 4.18
54 55 2.322161 TCGTTTTCGTTGATCCGACTC 58.678 47.619 0.00 0.00 44.46 3.36
55 56 2.030540 TCGTTTTCGTTGATCCGACTCT 60.031 45.455 0.00 0.00 44.46 3.24
56 57 2.090658 CGTTTTCGTTGATCCGACTCTG 59.909 50.000 0.00 0.00 36.42 3.35
57 58 3.057734 GTTTTCGTTGATCCGACTCTGT 58.942 45.455 0.00 0.00 36.42 3.41
58 59 3.380479 TTTCGTTGATCCGACTCTGTT 57.620 42.857 0.00 0.00 36.42 3.16
59 60 2.347697 TCGTTGATCCGACTCTGTTG 57.652 50.000 0.00 0.00 30.63 3.33
60 61 1.611977 TCGTTGATCCGACTCTGTTGT 59.388 47.619 0.00 0.00 30.63 3.32
61 62 1.986378 CGTTGATCCGACTCTGTTGTC 59.014 52.381 0.00 0.00 0.00 3.18
62 63 2.607038 CGTTGATCCGACTCTGTTGTCA 60.607 50.000 0.00 0.00 36.82 3.58
63 64 3.589988 GTTGATCCGACTCTGTTGTCAT 58.410 45.455 0.00 0.00 36.82 3.06
64 65 3.961480 TGATCCGACTCTGTTGTCATT 57.039 42.857 0.00 0.00 36.82 2.57
65 66 5.168569 GTTGATCCGACTCTGTTGTCATTA 58.831 41.667 0.00 0.00 36.82 1.90
66 67 4.998788 TGATCCGACTCTGTTGTCATTAG 58.001 43.478 0.00 0.00 36.82 1.73
67 68 4.462834 TGATCCGACTCTGTTGTCATTAGT 59.537 41.667 0.00 0.00 36.82 2.24
68 69 4.866508 TCCGACTCTGTTGTCATTAGTT 57.133 40.909 0.00 0.00 36.82 2.24
69 70 5.209818 TCCGACTCTGTTGTCATTAGTTT 57.790 39.130 0.00 0.00 36.82 2.66
70 71 5.227908 TCCGACTCTGTTGTCATTAGTTTC 58.772 41.667 0.00 0.00 36.82 2.78
71 72 5.010719 TCCGACTCTGTTGTCATTAGTTTCT 59.989 40.000 0.00 0.00 36.82 2.52
72 73 5.696724 CCGACTCTGTTGTCATTAGTTTCTT 59.303 40.000 0.00 0.00 36.82 2.52
73 74 6.202954 CCGACTCTGTTGTCATTAGTTTCTTT 59.797 38.462 0.00 0.00 36.82 2.52
74 75 7.254795 CCGACTCTGTTGTCATTAGTTTCTTTT 60.255 37.037 0.00 0.00 36.82 2.27
75 76 8.122952 CGACTCTGTTGTCATTAGTTTCTTTTT 58.877 33.333 0.00 0.00 36.82 1.94
76 77 9.439537 GACTCTGTTGTCATTAGTTTCTTTTTC 57.560 33.333 0.00 0.00 36.97 2.29
77 78 9.178758 ACTCTGTTGTCATTAGTTTCTTTTTCT 57.821 29.630 0.00 0.00 0.00 2.52
103 104 6.917217 TTTTATTTCTTTTGGGTGTGCTTG 57.083 33.333 0.00 0.00 0.00 4.01
104 105 5.606348 TTATTTCTTTTGGGTGTGCTTGT 57.394 34.783 0.00 0.00 0.00 3.16
105 106 2.957491 TTCTTTTGGGTGTGCTTGTG 57.043 45.000 0.00 0.00 0.00 3.33
106 107 0.459489 TCTTTTGGGTGTGCTTGTGC 59.541 50.000 0.00 0.00 40.20 4.57
107 108 0.461135 CTTTTGGGTGTGCTTGTGCT 59.539 50.000 0.00 0.00 40.48 4.40
108 109 0.175302 TTTTGGGTGTGCTTGTGCTG 59.825 50.000 0.00 0.00 40.48 4.41
109 110 0.969917 TTTGGGTGTGCTTGTGCTGT 60.970 50.000 0.00 0.00 40.48 4.40
110 111 1.383456 TTGGGTGTGCTTGTGCTGTC 61.383 55.000 0.00 0.00 40.48 3.51
111 112 1.526917 GGGTGTGCTTGTGCTGTCT 60.527 57.895 0.00 0.00 40.48 3.41
112 113 1.650912 GGTGTGCTTGTGCTGTCTG 59.349 57.895 0.00 0.00 40.48 3.51
113 114 1.009222 GTGTGCTTGTGCTGTCTGC 60.009 57.895 0.00 0.00 40.48 4.26
114 115 2.188829 TGTGCTTGTGCTGTCTGCC 61.189 57.895 0.00 0.00 42.00 4.85
115 116 2.595463 TGCTTGTGCTGTCTGCCC 60.595 61.111 0.00 0.00 42.00 5.36
116 117 2.595463 GCTTGTGCTGTCTGCCCA 60.595 61.111 0.00 0.00 42.00 5.36
117 118 2.623915 GCTTGTGCTGTCTGCCCAG 61.624 63.158 0.00 0.00 42.00 4.45
123 124 4.728409 CTGTCTGCCCAGCAATGA 57.272 55.556 0.00 0.00 38.41 2.57
124 125 2.951269 CTGTCTGCCCAGCAATGAA 58.049 52.632 0.00 0.00 38.41 2.57
125 126 1.471119 CTGTCTGCCCAGCAATGAAT 58.529 50.000 0.00 0.00 38.41 2.57
126 127 1.822990 CTGTCTGCCCAGCAATGAATT 59.177 47.619 0.00 0.00 38.41 2.17
127 128 1.820519 TGTCTGCCCAGCAATGAATTC 59.179 47.619 0.00 0.00 38.41 2.17
128 129 2.097825 GTCTGCCCAGCAATGAATTCT 58.902 47.619 7.05 0.00 38.41 2.40
129 130 3.282021 GTCTGCCCAGCAATGAATTCTA 58.718 45.455 7.05 0.00 38.41 2.10
130 131 3.696051 GTCTGCCCAGCAATGAATTCTAA 59.304 43.478 7.05 0.00 38.41 2.10
131 132 4.158394 GTCTGCCCAGCAATGAATTCTAAA 59.842 41.667 7.05 0.00 38.41 1.85
132 133 4.771577 TCTGCCCAGCAATGAATTCTAAAA 59.228 37.500 7.05 0.00 38.41 1.52
133 134 5.422970 TCTGCCCAGCAATGAATTCTAAAAT 59.577 36.000 7.05 0.00 38.41 1.82
134 135 5.421277 TGCCCAGCAATGAATTCTAAAATG 58.579 37.500 7.05 0.83 34.76 2.32
135 136 5.046448 TGCCCAGCAATGAATTCTAAAATGT 60.046 36.000 7.05 0.00 34.76 2.71
136 137 6.154192 TGCCCAGCAATGAATTCTAAAATGTA 59.846 34.615 7.05 0.00 34.76 2.29
137 138 7.147689 TGCCCAGCAATGAATTCTAAAATGTAT 60.148 33.333 7.05 0.00 34.76 2.29
138 139 7.383300 GCCCAGCAATGAATTCTAAAATGTATC 59.617 37.037 7.05 0.00 0.00 2.24
139 140 7.592533 CCCAGCAATGAATTCTAAAATGTATCG 59.407 37.037 7.05 0.00 0.00 2.92
140 141 7.592533 CCAGCAATGAATTCTAAAATGTATCGG 59.407 37.037 7.05 0.00 0.00 4.18
141 142 7.592533 CAGCAATGAATTCTAAAATGTATCGGG 59.407 37.037 7.05 0.00 0.00 5.14
142 143 7.285401 AGCAATGAATTCTAAAATGTATCGGGT 59.715 33.333 7.05 0.00 0.00 5.28
143 144 7.591426 GCAATGAATTCTAAAATGTATCGGGTC 59.409 37.037 7.05 0.00 0.00 4.46
144 145 6.838198 TGAATTCTAAAATGTATCGGGTCG 57.162 37.500 7.05 0.00 0.00 4.79
145 146 6.342906 TGAATTCTAAAATGTATCGGGTCGT 58.657 36.000 7.05 0.00 0.00 4.34
146 147 6.819649 TGAATTCTAAAATGTATCGGGTCGTT 59.180 34.615 7.05 0.00 0.00 3.85
147 148 6.598753 ATTCTAAAATGTATCGGGTCGTTG 57.401 37.500 0.00 0.00 0.00 4.10
148 149 3.866910 TCTAAAATGTATCGGGTCGTTGC 59.133 43.478 0.00 0.00 0.00 4.17
149 150 2.396590 AAATGTATCGGGTCGTTGCT 57.603 45.000 0.00 0.00 0.00 3.91
150 151 3.530265 AAATGTATCGGGTCGTTGCTA 57.470 42.857 0.00 0.00 0.00 3.49
151 152 3.746045 AATGTATCGGGTCGTTGCTAT 57.254 42.857 0.00 0.00 0.00 2.97
152 153 4.859304 AATGTATCGGGTCGTTGCTATA 57.141 40.909 0.00 0.00 0.00 1.31
153 154 5.401531 AATGTATCGGGTCGTTGCTATAT 57.598 39.130 0.00 0.00 0.00 0.86
154 155 4.430137 TGTATCGGGTCGTTGCTATATC 57.570 45.455 0.00 0.00 0.00 1.63
155 156 4.077108 TGTATCGGGTCGTTGCTATATCT 58.923 43.478 0.00 0.00 0.00 1.98
156 157 5.247862 TGTATCGGGTCGTTGCTATATCTA 58.752 41.667 0.00 0.00 0.00 1.98
157 158 5.884232 TGTATCGGGTCGTTGCTATATCTAT 59.116 40.000 0.00 0.00 0.00 1.98
158 159 7.049754 TGTATCGGGTCGTTGCTATATCTATA 58.950 38.462 0.00 0.00 0.00 1.31
159 160 7.718314 TGTATCGGGTCGTTGCTATATCTATAT 59.282 37.037 0.00 0.00 0.00 0.86
160 161 9.212641 GTATCGGGTCGTTGCTATATCTATATA 57.787 37.037 0.00 0.00 0.00 0.86
161 162 7.725818 TCGGGTCGTTGCTATATCTATATAG 57.274 40.000 11.20 11.20 43.16 1.31
171 172 6.570672 CTATATCTATATAGCGGGGCGAAA 57.429 41.667 4.75 0.00 36.77 3.46
172 173 3.802948 ATCTATATAGCGGGGCGAAAG 57.197 47.619 4.75 0.00 0.00 2.62
173 174 6.842773 CTATATCTATATAGCGGGGCGAAAGC 60.843 46.154 4.75 0.00 44.53 3.51
308 316 0.530211 AGAGCGAGAGATGCATGCAC 60.530 55.000 25.37 16.77 33.85 4.57
416 435 2.920645 CGACCGATCCATCTCCCCG 61.921 68.421 0.00 0.00 0.00 5.73
442 461 2.815211 GATGCCTGCGCGAACTCA 60.815 61.111 12.10 1.49 38.08 3.41
458 477 1.134670 ACTCAAACTATGCCTCTCGCC 60.135 52.381 0.00 0.00 36.24 5.54
459 478 0.178068 TCAAACTATGCCTCTCGCCC 59.822 55.000 0.00 0.00 36.24 6.13
460 479 0.179000 CAAACTATGCCTCTCGCCCT 59.821 55.000 0.00 0.00 36.24 5.19
461 480 0.466124 AAACTATGCCTCTCGCCCTC 59.534 55.000 0.00 0.00 36.24 4.30
462 481 0.397816 AACTATGCCTCTCGCCCTCT 60.398 55.000 0.00 0.00 36.24 3.69
463 482 0.825840 ACTATGCCTCTCGCCCTCTC 60.826 60.000 0.00 0.00 36.24 3.20
464 483 1.531739 CTATGCCTCTCGCCCTCTCC 61.532 65.000 0.00 0.00 36.24 3.71
467 486 2.837291 CCTCTCGCCCTCTCCCAG 60.837 72.222 0.00 0.00 0.00 4.45
711 749 2.413310 TAATTCGGCCTCCTCCAAAC 57.587 50.000 0.00 0.00 0.00 2.93
716 754 1.674651 GGCCTCCTCCAAACCGTTC 60.675 63.158 0.00 0.00 0.00 3.95
719 757 2.356553 TCCTCCAAACCGTTCGCG 60.357 61.111 0.00 0.00 40.93 5.87
740 778 4.755411 CGTCTGTACTCTCTCTCTCTCTT 58.245 47.826 0.00 0.00 0.00 2.85
741 779 4.804139 CGTCTGTACTCTCTCTCTCTCTTC 59.196 50.000 0.00 0.00 0.00 2.87
744 782 5.128827 TCTGTACTCTCTCTCTCTCTTCCTC 59.871 48.000 0.00 0.00 0.00 3.71
745 783 3.933861 ACTCTCTCTCTCTCTTCCTCC 57.066 52.381 0.00 0.00 0.00 4.30
746 784 2.509964 ACTCTCTCTCTCTCTTCCTCCC 59.490 54.545 0.00 0.00 0.00 4.30
796 837 2.393271 AGAATCTTCTTCGTGGGCTG 57.607 50.000 0.00 0.00 32.55 4.85
797 838 0.729690 GAATCTTCTTCGTGGGCTGC 59.270 55.000 0.00 0.00 0.00 5.25
798 839 0.678048 AATCTTCTTCGTGGGCTGCC 60.678 55.000 11.05 11.05 0.00 4.85
858 899 2.464782 GGGGCAGTGGTAGTTAGTACT 58.535 52.381 0.00 0.00 38.44 2.73
859 900 3.635591 GGGGCAGTGGTAGTTAGTACTA 58.364 50.000 0.00 0.00 35.78 1.82
860 901 4.221530 GGGGCAGTGGTAGTTAGTACTAT 58.778 47.826 2.79 0.00 39.01 2.12
861 902 4.280425 GGGGCAGTGGTAGTTAGTACTATC 59.720 50.000 2.79 3.00 39.01 2.08
862 903 4.280425 GGGCAGTGGTAGTTAGTACTATCC 59.720 50.000 2.79 5.41 37.20 2.59
863 904 4.891756 GGCAGTGGTAGTTAGTACTATCCA 59.108 45.833 2.79 7.77 37.20 3.41
864 905 5.539193 GGCAGTGGTAGTTAGTACTATCCAT 59.461 44.000 2.79 0.00 38.79 3.41
909 954 3.875125 AGATCTCTCCGTATATAGCGCA 58.125 45.455 11.47 0.00 0.00 6.09
936 981 0.732538 CGGCGGCTGGTTCATTTTTC 60.733 55.000 7.61 0.00 0.00 2.29
978 1024 0.105607 GGGTGTAGGAGTAGGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
1596 1652 6.971726 TCCGCAGATATTTTCTAGAACCTA 57.028 37.500 4.18 0.17 31.77 3.08
1670 1726 5.716960 GCGTTAGTTAGCGAAGAAAAGTACG 60.717 44.000 0.00 0.00 31.27 3.67
1713 1774 2.035626 ATGCCGGGTTGGACTTGG 59.964 61.111 2.18 0.00 42.00 3.61
1719 1780 0.958822 CGGGTTGGACTTGGGAAAAG 59.041 55.000 0.00 0.00 0.00 2.27
1897 1967 2.533535 CGCTCGATCATTCACAAGACTC 59.466 50.000 0.00 0.00 0.00 3.36
1898 1968 2.863137 GCTCGATCATTCACAAGACTCC 59.137 50.000 0.00 0.00 0.00 3.85
1899 1969 3.677148 GCTCGATCATTCACAAGACTCCA 60.677 47.826 0.00 0.00 0.00 3.86
1901 1971 5.089970 TCGATCATTCACAAGACTCCATT 57.910 39.130 0.00 0.00 0.00 3.16
1904 1974 6.430925 TCGATCATTCACAAGACTCCATTTTT 59.569 34.615 0.00 0.00 0.00 1.94
1983 2063 3.777465 TGGATCAGTTGTAGCTACGTC 57.223 47.619 18.74 13.51 0.00 4.34
1985 2065 2.110226 GATCAGTTGTAGCTACGTCGC 58.890 52.381 18.74 3.45 0.00 5.19
1990 2070 2.473984 AGTTGTAGCTACGTCGCAAAAC 59.526 45.455 18.74 14.47 0.00 2.43
2010 2090 0.927537 TAATTTGGCGTGCTCGATCG 59.072 50.000 13.13 9.36 39.71 3.69
2040 2120 1.598601 GTTGGTTTTGGTTGCATGCTG 59.401 47.619 20.33 0.00 0.00 4.41
2115 2205 4.156190 ACGATCATCGCGTTTAGATAGGAT 59.844 41.667 7.05 0.00 45.12 3.24
2179 2283 8.013236 ACATTGTTGTTCTTGTTGTGTTTTAC 57.987 30.769 0.00 0.00 29.55 2.01
2201 2305 0.746659 AGCTGCCTTTTGTTGTCACC 59.253 50.000 0.00 0.00 0.00 4.02
2214 2318 0.534203 TGTCACCTTTTCGGACTGGC 60.534 55.000 0.00 0.00 36.31 4.85
2216 2320 0.250295 TCACCTTTTCGGACTGGCAG 60.250 55.000 14.16 14.16 36.31 4.85
2218 2322 1.600636 CCTTTTCGGACTGGCAGCA 60.601 57.895 15.89 0.00 33.16 4.41
2273 2388 4.753610 GCTACAGATGATGTGTACATGCAT 59.246 41.667 0.00 3.27 43.80 3.96
2298 2440 4.485163 CCATCGTCTCCAAAATTTTGACC 58.515 43.478 28.44 13.49 40.55 4.02
2315 2457 2.202440 CGTACAGGAGACACCGCG 60.202 66.667 0.00 0.00 44.74 6.46
2334 2476 3.544048 CGCGTGATTATGCTAGTGGTTTG 60.544 47.826 0.00 0.00 36.66 2.93
2343 2485 8.854614 ATTATGCTAGTGGTTTGGAGATTATC 57.145 34.615 0.00 0.00 0.00 1.75
2412 2622 3.309954 GCTTAGCCAGATCTTACCAAACG 59.690 47.826 0.00 0.00 0.00 3.60
2542 2764 1.796796 GGCGTCCACTTGCTGATTC 59.203 57.895 0.00 0.00 0.00 2.52
2580 2802 5.480642 TCTTCCTCTGAGATCATAATGCC 57.519 43.478 6.17 0.00 0.00 4.40
2612 2836 0.319405 ACCGGTTGACTTTACCTCCG 59.681 55.000 0.00 0.00 38.05 4.63
2614 2838 1.001181 CCGGTTGACTTTACCTCCGAA 59.999 52.381 0.00 0.00 40.29 4.30
2622 2846 2.165845 ACTTTACCTCCGAAGTCGATGG 59.834 50.000 1.43 6.37 43.02 3.51
2647 2871 1.598130 GTCCAGCTTGTTCGCACCT 60.598 57.895 0.00 0.00 0.00 4.00
2668 2892 8.520351 GCACCTGGAGTAATAAGTAACAAAAAT 58.480 33.333 0.00 0.00 0.00 1.82
2796 3065 7.097192 AGAACTGAAGCACGATTAGAAATACA 58.903 34.615 0.00 0.00 0.00 2.29
2798 3067 5.812642 ACTGAAGCACGATTAGAAATACAGG 59.187 40.000 0.00 0.00 0.00 4.00
2799 3068 5.116180 TGAAGCACGATTAGAAATACAGGG 58.884 41.667 0.00 0.00 0.00 4.45
2800 3069 4.755266 AGCACGATTAGAAATACAGGGT 57.245 40.909 0.00 0.00 0.00 4.34
2801 3070 5.099042 AGCACGATTAGAAATACAGGGTT 57.901 39.130 0.00 0.00 0.00 4.11
2802 3071 4.876107 AGCACGATTAGAAATACAGGGTTG 59.124 41.667 0.00 0.00 0.00 3.77
2803 3072 4.634443 GCACGATTAGAAATACAGGGTTGT 59.366 41.667 0.00 0.00 41.39 3.32
2804 3073 5.123344 GCACGATTAGAAATACAGGGTTGTT 59.877 40.000 0.00 0.00 38.76 2.83
2805 3074 6.314400 GCACGATTAGAAATACAGGGTTGTTA 59.686 38.462 0.00 0.00 38.76 2.41
2806 3075 7.148373 GCACGATTAGAAATACAGGGTTGTTAA 60.148 37.037 0.00 0.00 38.76 2.01
2807 3076 8.889717 CACGATTAGAAATACAGGGTTGTTAAT 58.110 33.333 0.00 0.00 38.76 1.40
2808 3077 9.457436 ACGATTAGAAATACAGGGTTGTTAATT 57.543 29.630 0.00 0.00 38.76 1.40
2809 3078 9.931210 CGATTAGAAATACAGGGTTGTTAATTC 57.069 33.333 0.00 0.00 38.76 2.17
2810 3079 9.931210 GATTAGAAATACAGGGTTGTTAATTCG 57.069 33.333 0.00 0.00 38.76 3.34
2811 3080 6.190954 AGAAATACAGGGTTGTTAATTCGC 57.809 37.500 0.00 0.00 38.76 4.70
2812 3081 5.708230 AGAAATACAGGGTTGTTAATTCGCA 59.292 36.000 0.00 0.00 38.76 5.10
2813 3082 5.560966 AATACAGGGTTGTTAATTCGCAG 57.439 39.130 0.00 0.00 38.76 5.18
2814 3083 2.858745 ACAGGGTTGTTAATTCGCAGT 58.141 42.857 0.00 0.00 32.28 4.40
2815 3084 2.812011 ACAGGGTTGTTAATTCGCAGTC 59.188 45.455 0.00 0.00 32.28 3.51
2816 3085 2.073816 AGGGTTGTTAATTCGCAGTCG 58.926 47.619 0.00 0.00 0.00 4.18
2817 3086 2.070783 GGGTTGTTAATTCGCAGTCGA 58.929 47.619 0.00 0.00 43.89 4.20
2818 3087 8.889795 TACAGGGTTGTTAATTCGCAGTCGAA 62.890 42.308 2.54 2.54 46.58 3.71
2828 3097 3.775661 TCGCAGTCGAATGAGACATAA 57.224 42.857 18.43 0.00 42.44 1.90
2829 3098 4.307443 TCGCAGTCGAATGAGACATAAT 57.693 40.909 18.43 0.00 42.44 1.28
2830 3099 4.290969 TCGCAGTCGAATGAGACATAATC 58.709 43.478 18.43 0.00 42.44 1.75
2831 3100 4.044426 CGCAGTCGAATGAGACATAATCA 58.956 43.478 18.43 0.00 43.24 2.57
2832 3101 4.504097 CGCAGTCGAATGAGACATAATCAA 59.496 41.667 18.43 0.00 43.24 2.57
2833 3102 5.005682 CGCAGTCGAATGAGACATAATCAAA 59.994 40.000 18.43 0.00 43.24 2.69
2834 3103 6.292542 CGCAGTCGAATGAGACATAATCAAAT 60.293 38.462 18.43 0.00 43.24 2.32
2835 3104 7.068341 GCAGTCGAATGAGACATAATCAAATC 58.932 38.462 18.43 0.00 43.24 2.17
2836 3105 7.042187 GCAGTCGAATGAGACATAATCAAATCT 60.042 37.037 18.43 0.00 43.24 2.40
2837 3106 8.486383 CAGTCGAATGAGACATAATCAAATCTC 58.514 37.037 7.15 0.00 43.24 2.75
2842 3111 8.486383 GAATGAGACATAATCAAATCTCAGTCG 58.514 37.037 12.90 0.00 46.79 4.18
2843 3112 7.100458 TGAGACATAATCAAATCTCAGTCGA 57.900 36.000 0.00 0.00 41.99 4.20
2844 3113 7.720442 TGAGACATAATCAAATCTCAGTCGAT 58.280 34.615 0.00 0.00 41.99 3.59
2845 3114 7.650903 TGAGACATAATCAAATCTCAGTCGATG 59.349 37.037 0.00 0.00 41.99 3.84
2846 3115 6.423302 AGACATAATCAAATCTCAGTCGATGC 59.577 38.462 0.00 0.00 0.00 3.91
2847 3116 6.286758 ACATAATCAAATCTCAGTCGATGCT 58.713 36.000 0.00 0.00 0.00 3.79
2848 3117 7.436933 ACATAATCAAATCTCAGTCGATGCTA 58.563 34.615 0.00 0.00 0.00 3.49
2849 3118 7.928167 ACATAATCAAATCTCAGTCGATGCTAA 59.072 33.333 0.00 0.00 0.00 3.09
2850 3119 8.768019 CATAATCAAATCTCAGTCGATGCTAAA 58.232 33.333 0.00 0.00 0.00 1.85
2851 3120 7.798596 AATCAAATCTCAGTCGATGCTAAAT 57.201 32.000 0.00 0.00 0.00 1.40
2852 3121 7.798596 ATCAAATCTCAGTCGATGCTAAATT 57.201 32.000 0.00 0.00 0.00 1.82
2853 3122 7.239166 TCAAATCTCAGTCGATGCTAAATTC 57.761 36.000 0.00 0.00 0.00 2.17
2854 3123 5.896922 AATCTCAGTCGATGCTAAATTCG 57.103 39.130 0.00 0.00 36.72 3.34
2855 3124 4.371855 TCTCAGTCGATGCTAAATTCGT 57.628 40.909 0.00 0.00 36.74 3.85
2856 3125 5.494632 TCTCAGTCGATGCTAAATTCGTA 57.505 39.130 0.00 0.00 36.74 3.43
2857 3126 5.511571 TCTCAGTCGATGCTAAATTCGTAG 58.488 41.667 0.00 0.00 36.74 3.51
2858 3127 4.607955 TCAGTCGATGCTAAATTCGTAGG 58.392 43.478 0.00 0.00 36.74 3.18
2859 3128 4.337274 TCAGTCGATGCTAAATTCGTAGGA 59.663 41.667 0.00 0.00 36.74 2.94
2860 3129 5.009710 TCAGTCGATGCTAAATTCGTAGGAT 59.990 40.000 0.00 0.00 35.11 3.24
2861 3130 5.692204 CAGTCGATGCTAAATTCGTAGGATT 59.308 40.000 0.00 0.00 32.82 3.01
2862 3131 6.201044 CAGTCGATGCTAAATTCGTAGGATTT 59.799 38.462 0.00 0.00 32.82 2.17
2863 3132 7.381408 CAGTCGATGCTAAATTCGTAGGATTTA 59.619 37.037 0.00 0.00 32.82 1.40
2864 3133 7.381678 AGTCGATGCTAAATTCGTAGGATTTAC 59.618 37.037 0.00 0.00 32.82 2.01
2865 3134 7.168637 GTCGATGCTAAATTCGTAGGATTTACA 59.831 37.037 0.00 0.00 32.82 2.41
2866 3135 7.870954 TCGATGCTAAATTCGTAGGATTTACAT 59.129 33.333 7.76 7.76 32.82 2.29
2867 3136 8.162880 CGATGCTAAATTCGTAGGATTTACATC 58.837 37.037 16.16 16.16 32.82 3.06
2868 3137 7.402811 TGCTAAATTCGTAGGATTTACATCG 57.597 36.000 0.00 0.00 0.00 3.84
2869 3138 7.204604 TGCTAAATTCGTAGGATTTACATCGA 58.795 34.615 0.00 0.00 0.00 3.59
2870 3139 7.381408 TGCTAAATTCGTAGGATTTACATCGAG 59.619 37.037 0.00 0.00 0.00 4.04
2871 3140 7.594015 GCTAAATTCGTAGGATTTACATCGAGA 59.406 37.037 0.00 0.00 0.00 4.04
2872 3141 9.627395 CTAAATTCGTAGGATTTACATCGAGAT 57.373 33.333 0.00 0.00 0.00 2.75
2873 3142 8.522178 AAATTCGTAGGATTTACATCGAGATC 57.478 34.615 0.00 0.00 0.00 2.75
2874 3143 5.624344 TCGTAGGATTTACATCGAGATCC 57.376 43.478 0.00 0.00 38.65 3.36
2875 3144 4.458295 TCGTAGGATTTACATCGAGATCCC 59.542 45.833 9.54 0.00 39.06 3.85
2876 3145 4.459685 CGTAGGATTTACATCGAGATCCCT 59.540 45.833 9.54 0.00 39.06 4.20
2877 3146 4.881019 AGGATTTACATCGAGATCCCTG 57.119 45.455 9.54 0.00 39.06 4.45
2878 3147 3.007398 AGGATTTACATCGAGATCCCTGC 59.993 47.826 9.54 0.00 39.06 4.85
2879 3148 3.244215 GGATTTACATCGAGATCCCTGCA 60.244 47.826 0.00 0.00 33.50 4.41
2880 3149 3.904800 TTTACATCGAGATCCCTGCAA 57.095 42.857 0.00 0.00 0.00 4.08
2881 3150 3.904800 TTACATCGAGATCCCTGCAAA 57.095 42.857 0.00 0.00 0.00 3.68
2882 3151 4.422073 TTACATCGAGATCCCTGCAAAT 57.578 40.909 0.00 0.00 0.00 2.32
2883 3152 3.287867 ACATCGAGATCCCTGCAAATT 57.712 42.857 0.00 0.00 0.00 1.82
2884 3153 3.624777 ACATCGAGATCCCTGCAAATTT 58.375 40.909 0.00 0.00 0.00 1.82
2885 3154 4.019174 ACATCGAGATCCCTGCAAATTTT 58.981 39.130 0.00 0.00 0.00 1.82
2886 3155 4.463891 ACATCGAGATCCCTGCAAATTTTT 59.536 37.500 0.00 0.00 0.00 1.94
2887 3156 4.701956 TCGAGATCCCTGCAAATTTTTC 57.298 40.909 0.00 0.00 0.00 2.29
2888 3157 4.335416 TCGAGATCCCTGCAAATTTTTCT 58.665 39.130 0.00 0.00 0.00 2.52
2889 3158 4.766891 TCGAGATCCCTGCAAATTTTTCTT 59.233 37.500 0.00 0.00 0.00 2.52
2890 3159 5.243730 TCGAGATCCCTGCAAATTTTTCTTT 59.756 36.000 0.00 0.00 0.00 2.52
2891 3160 5.928264 CGAGATCCCTGCAAATTTTTCTTTT 59.072 36.000 0.00 0.00 0.00 2.27
2892 3161 6.424812 CGAGATCCCTGCAAATTTTTCTTTTT 59.575 34.615 0.00 0.00 0.00 1.94
2893 3162 7.598493 CGAGATCCCTGCAAATTTTTCTTTTTA 59.402 33.333 0.00 0.00 0.00 1.52
2894 3163 8.837788 AGATCCCTGCAAATTTTTCTTTTTAG 57.162 30.769 0.00 0.00 0.00 1.85
2895 3164 8.432013 AGATCCCTGCAAATTTTTCTTTTTAGT 58.568 29.630 0.00 0.00 0.00 2.24
2896 3165 8.978874 ATCCCTGCAAATTTTTCTTTTTAGTT 57.021 26.923 0.00 0.00 0.00 2.24
2897 3166 8.800370 TCCCTGCAAATTTTTCTTTTTAGTTT 57.200 26.923 0.00 0.00 0.00 2.66
2898 3167 9.237187 TCCCTGCAAATTTTTCTTTTTAGTTTT 57.763 25.926 0.00 0.00 0.00 2.43
2899 3168 9.853555 CCCTGCAAATTTTTCTTTTTAGTTTTT 57.146 25.926 0.00 0.00 0.00 1.94
2925 3194 9.790389 TTTTTCGTTTTTACATGTTATGTCACT 57.210 25.926 2.30 0.00 43.67 3.41
2926 3195 9.790389 TTTTCGTTTTTACATGTTATGTCACTT 57.210 25.926 2.30 0.00 43.67 3.16
2927 3196 8.775220 TTCGTTTTTACATGTTATGTCACTTG 57.225 30.769 2.30 0.00 43.67 3.16
2928 3197 8.144155 TCGTTTTTACATGTTATGTCACTTGA 57.856 30.769 2.30 0.00 43.67 3.02
2929 3198 8.065407 TCGTTTTTACATGTTATGTCACTTGAC 58.935 33.333 2.30 2.19 43.67 3.18
2930 3199 8.067784 CGTTTTTACATGTTATGTCACTTGACT 58.932 33.333 2.30 0.00 43.67 3.41
2931 3200 9.730420 GTTTTTACATGTTATGTCACTTGACTT 57.270 29.630 2.30 6.92 43.67 3.01
2953 3222 9.820229 GACTTATATCTGATTAAGTCTCAGTCG 57.180 37.037 25.40 0.00 45.55 4.18
2954 3223 9.562408 ACTTATATCTGATTAAGTCTCAGTCGA 57.438 33.333 14.19 0.00 40.79 4.20
2955 3224 9.820229 CTTATATCTGATTAAGTCTCAGTCGAC 57.180 37.037 7.70 7.70 40.79 4.20
2956 3225 9.562408 TTATATCTGATTAAGTCTCAGTCGACT 57.438 33.333 13.58 13.58 45.73 4.18
2957 3226 5.553290 TCTGATTAAGTCTCAGTCGACTG 57.447 43.478 34.76 34.76 43.14 3.51
2958 3227 4.098055 TGATTAAGTCTCAGTCGACTGC 57.902 45.455 35.48 23.55 43.14 4.40
2959 3228 3.506067 TGATTAAGTCTCAGTCGACTGCA 59.494 43.478 35.48 23.35 43.14 4.41
2960 3229 2.991434 TAAGTCTCAGTCGACTGCAC 57.009 50.000 35.48 30.89 43.14 4.57
2961 3230 0.315568 AAGTCTCAGTCGACTGCACC 59.684 55.000 35.48 24.63 43.14 5.01
2962 3231 1.080434 GTCTCAGTCGACTGCACCC 60.080 63.158 35.48 20.66 43.46 4.61
2992 3264 0.502695 CGTAATGCTACGTCATGGCG 59.497 55.000 19.93 19.93 44.79 5.69
2993 3265 2.126183 CGTAATGCTACGTCATGGCGT 61.126 52.381 29.91 29.91 44.79 5.68
3016 3298 3.589654 CTCACGATGGCGGTGGTGT 62.590 63.158 0.00 0.00 43.17 4.16
3017 3299 3.422303 CACGATGGCGGTGGTGTG 61.422 66.667 0.00 0.00 43.17 3.82
3374 3663 2.043227 TGGGGGATGTTTTGGTGTTTC 58.957 47.619 0.00 0.00 0.00 2.78
3387 3676 3.194861 TGGTGTTTCTCTGACGTTCTTG 58.805 45.455 0.00 0.00 0.00 3.02
3388 3677 2.032808 GGTGTTTCTCTGACGTTCTTGC 60.033 50.000 0.00 0.00 0.00 4.01
3391 3680 3.876914 TGTTTCTCTGACGTTCTTGCATT 59.123 39.130 0.00 0.00 0.00 3.56
3604 3893 2.747686 GAGGAGGGCGACACCAAA 59.252 61.111 6.51 0.00 42.05 3.28
3663 3952 1.522569 CGGAGGAATGTCTGTCCCC 59.477 63.158 0.00 0.00 35.59 4.81
3667 3956 1.136500 GAGGAATGTCTGTCCCCGTAC 59.864 57.143 0.00 0.00 35.59 3.67
3668 3957 1.192428 GGAATGTCTGTCCCCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
3673 3964 0.816373 GTCTGTCCCCGTACTTCTCC 59.184 60.000 0.00 0.00 0.00 3.71
3705 3996 3.987868 TCTAGTGCACGTTTGAACTGATC 59.012 43.478 12.01 0.00 42.27 2.92
3736 4027 3.672503 GGGAATGGGGTGCAGGGT 61.673 66.667 0.00 0.00 0.00 4.34
3763 4054 0.741326 ACATCTCGTCGGTCATGGAG 59.259 55.000 0.00 0.00 0.00 3.86
3773 4064 2.678580 TCATGGAGGACGACGGCA 60.679 61.111 1.63 0.00 0.00 5.69
3774 4065 2.202797 CATGGAGGACGACGGCAG 60.203 66.667 1.63 0.00 0.00 4.85
4303 4597 3.365364 GCCGGTTTGTGATGAGAAGAAAG 60.365 47.826 1.90 0.00 0.00 2.62
4325 4619 1.369689 GCTTTGCAGTGTCACAGCG 60.370 57.895 14.74 3.11 32.90 5.18
4390 4684 1.719780 GTGTTACTAGTGCTGTGCGTC 59.280 52.381 5.39 0.00 0.00 5.19
4412 4706 3.405831 TGATGTTTCAGCTCAGAACAGG 58.594 45.455 10.65 0.00 0.00 4.00
4502 4796 3.060895 CACTTCGGTTCGAGAATAACAGC 59.939 47.826 0.00 0.00 37.14 4.40
4609 4903 8.385491 TCAAATGGACATATACTTAGCATGGAT 58.615 33.333 0.00 0.00 0.00 3.41
4628 4922 5.637127 TGGATATAGATAGGGTTGTGTCGA 58.363 41.667 0.00 0.00 0.00 4.20
4707 5001 2.286950 GCTTGGATTATCGCAATTCGCA 60.287 45.455 1.75 0.00 42.60 5.10
4717 5011 1.064505 CGCAATTCGCATTCTGACCAT 59.935 47.619 1.75 0.00 42.60 3.55
4728 5022 3.895232 TTCTGACCATAGAAGGCAGAC 57.105 47.619 0.00 0.00 39.68 3.51
4729 5023 2.111384 TCTGACCATAGAAGGCAGACC 58.889 52.381 0.00 0.00 37.10 3.85
4734 5028 1.207089 CCATAGAAGGCAGACCAACGA 59.793 52.381 0.00 0.00 39.06 3.85
4735 5029 2.544685 CATAGAAGGCAGACCAACGAG 58.455 52.381 0.00 0.00 39.06 4.18
4736 5030 1.629043 TAGAAGGCAGACCAACGAGT 58.371 50.000 0.00 0.00 39.06 4.18
4737 5031 0.318762 AGAAGGCAGACCAACGAGTC 59.681 55.000 0.00 0.00 39.06 3.36
4738 5032 0.033504 GAAGGCAGACCAACGAGTCA 59.966 55.000 0.00 0.00 39.34 3.41
4739 5033 0.249911 AAGGCAGACCAACGAGTCAC 60.250 55.000 0.00 0.00 39.34 3.67
4740 5034 1.668151 GGCAGACCAACGAGTCACC 60.668 63.158 0.00 0.00 39.34 4.02
4741 5035 1.069090 GCAGACCAACGAGTCACCA 59.931 57.895 0.00 0.00 39.34 4.17
4772 5066 2.161078 TAATCGGCGGTCTGTGTGCA 62.161 55.000 7.21 0.00 0.00 4.57
4777 5071 1.301401 GCGGTCTGTGTGCACCTAA 60.301 57.895 15.69 0.00 0.00 2.69
4939 5233 3.242543 GCGAGAATAGCTGTTTGGACATG 60.243 47.826 0.00 0.00 34.72 3.21
5013 5307 2.263077 GTCACGAGGTTAGCAGACATG 58.737 52.381 0.00 0.00 0.00 3.21
5023 5317 0.615331 AGCAGACATGTCGTGGGAAT 59.385 50.000 19.85 0.00 34.09 3.01
5186 5480 3.565482 TGCACAGAAAGGAACTCATCAAC 59.435 43.478 0.00 0.00 38.49 3.18
5192 5486 6.656693 ACAGAAAGGAACTCATCAACTATTGG 59.343 38.462 0.00 0.00 38.49 3.16
5200 5494 3.346315 TCATCAACTATTGGCAGGTGTG 58.654 45.455 0.00 0.00 34.68 3.82
5207 5501 1.620822 ATTGGCAGGTGTGTCCTTTC 58.379 50.000 0.00 0.00 45.67 2.62
5210 5504 0.179018 GGCAGGTGTGTCCTTTCAGT 60.179 55.000 0.00 0.00 45.67 3.41
5211 5505 0.947244 GCAGGTGTGTCCTTTCAGTG 59.053 55.000 0.00 0.00 45.67 3.66
5212 5506 1.747206 GCAGGTGTGTCCTTTCAGTGT 60.747 52.381 0.00 0.00 45.67 3.55
5213 5507 1.942657 CAGGTGTGTCCTTTCAGTGTG 59.057 52.381 0.00 0.00 45.67 3.82
5214 5508 1.559682 AGGTGTGTCCTTTCAGTGTGT 59.440 47.619 0.00 0.00 45.67 3.72
5215 5509 1.670811 GGTGTGTCCTTTCAGTGTGTG 59.329 52.381 0.00 0.00 0.00 3.82
5216 5510 1.064060 GTGTGTCCTTTCAGTGTGTGC 59.936 52.381 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.401766 CGCTGCGCCCTTCAAAGAT 61.402 57.895 9.88 0.00 0.00 2.40
3 4 4.107051 CCGCTGCGCCCTTCAAAG 62.107 66.667 18.00 0.00 0.00 2.77
18 19 3.114616 GATGATGATCCGCGGCCG 61.115 66.667 24.05 24.05 0.00 6.13
19 20 3.114616 CGATGATGATCCGCGGCC 61.115 66.667 23.51 15.56 0.00 6.13
20 21 1.498865 AAACGATGATGATCCGCGGC 61.499 55.000 23.51 8.29 0.00 6.53
21 22 0.937304 AAAACGATGATGATCCGCGG 59.063 50.000 22.12 22.12 0.00 6.46
22 23 1.395944 CGAAAACGATGATGATCCGCG 60.396 52.381 0.00 0.00 0.00 6.46
23 24 1.593006 ACGAAAACGATGATGATCCGC 59.407 47.619 0.00 0.00 0.00 5.54
24 25 3.305897 TCAACGAAAACGATGATGATCCG 59.694 43.478 0.00 0.00 0.00 4.18
25 26 4.857871 TCAACGAAAACGATGATGATCC 57.142 40.909 0.00 0.00 0.00 3.36
26 27 5.435557 GGATCAACGAAAACGATGATGATC 58.564 41.667 16.97 16.16 40.41 2.92
27 28 4.025730 CGGATCAACGAAAACGATGATGAT 60.026 41.667 16.97 10.60 32.82 2.45
28 29 3.305897 CGGATCAACGAAAACGATGATGA 59.694 43.478 16.97 7.16 32.82 2.92
29 30 3.305897 TCGGATCAACGAAAACGATGATG 59.694 43.478 16.97 6.89 40.34 3.07
30 31 3.306166 GTCGGATCAACGAAAACGATGAT 59.694 43.478 13.27 13.27 45.38 2.45
31 32 2.664568 GTCGGATCAACGAAAACGATGA 59.335 45.455 0.00 0.00 45.38 2.92
32 33 2.666508 AGTCGGATCAACGAAAACGATG 59.333 45.455 0.00 0.00 45.38 3.84
33 34 2.921754 GAGTCGGATCAACGAAAACGAT 59.078 45.455 0.00 0.00 45.38 3.73
34 35 2.030540 AGAGTCGGATCAACGAAAACGA 60.031 45.455 0.00 0.00 45.38 3.85
35 36 2.090658 CAGAGTCGGATCAACGAAAACG 59.909 50.000 0.00 0.00 45.38 3.60
36 37 3.057734 ACAGAGTCGGATCAACGAAAAC 58.942 45.455 0.00 0.00 45.38 2.43
37 38 3.380479 ACAGAGTCGGATCAACGAAAA 57.620 42.857 0.00 0.00 45.38 2.29
38 39 3.057019 CAACAGAGTCGGATCAACGAAA 58.943 45.455 0.00 0.00 45.38 3.46
39 40 2.035449 ACAACAGAGTCGGATCAACGAA 59.965 45.455 0.00 0.00 45.38 3.85
40 41 1.611977 ACAACAGAGTCGGATCAACGA 59.388 47.619 0.00 0.00 41.13 3.85
41 42 1.986378 GACAACAGAGTCGGATCAACG 59.014 52.381 0.00 0.00 0.00 4.10
42 43 3.026630 TGACAACAGAGTCGGATCAAC 57.973 47.619 0.00 0.00 41.41 3.18
43 44 3.961480 ATGACAACAGAGTCGGATCAA 57.039 42.857 0.00 0.00 41.41 2.57
44 45 3.961480 AATGACAACAGAGTCGGATCA 57.039 42.857 0.00 0.00 41.41 2.92
45 46 5.000012 ACTAATGACAACAGAGTCGGATC 58.000 43.478 0.00 0.00 41.41 3.36
46 47 5.407407 AACTAATGACAACAGAGTCGGAT 57.593 39.130 0.00 0.00 41.41 4.18
47 48 4.866508 AACTAATGACAACAGAGTCGGA 57.133 40.909 0.00 0.00 41.41 4.55
48 49 5.230942 AGAAACTAATGACAACAGAGTCGG 58.769 41.667 0.00 0.00 41.41 4.79
49 50 6.771188 AAGAAACTAATGACAACAGAGTCG 57.229 37.500 0.00 0.00 41.41 4.18
50 51 9.439537 GAAAAAGAAACTAATGACAACAGAGTC 57.560 33.333 0.00 0.00 38.99 3.36
51 52 9.178758 AGAAAAAGAAACTAATGACAACAGAGT 57.821 29.630 0.00 0.00 0.00 3.24
79 80 6.881602 ACAAGCACACCCAAAAGAAATAAAAA 59.118 30.769 0.00 0.00 0.00 1.94
80 81 6.314896 CACAAGCACACCCAAAAGAAATAAAA 59.685 34.615 0.00 0.00 0.00 1.52
81 82 5.814705 CACAAGCACACCCAAAAGAAATAAA 59.185 36.000 0.00 0.00 0.00 1.40
82 83 5.355596 CACAAGCACACCCAAAAGAAATAA 58.644 37.500 0.00 0.00 0.00 1.40
83 84 4.739137 GCACAAGCACACCCAAAAGAAATA 60.739 41.667 0.00 0.00 41.58 1.40
84 85 3.795877 CACAAGCACACCCAAAAGAAAT 58.204 40.909 0.00 0.00 0.00 2.17
85 86 2.676463 GCACAAGCACACCCAAAAGAAA 60.676 45.455 0.00 0.00 41.58 2.52
86 87 1.134848 GCACAAGCACACCCAAAAGAA 60.135 47.619 0.00 0.00 41.58 2.52
87 88 0.459489 GCACAAGCACACCCAAAAGA 59.541 50.000 0.00 0.00 41.58 2.52
88 89 0.461135 AGCACAAGCACACCCAAAAG 59.539 50.000 0.00 0.00 45.49 2.27
89 90 0.175302 CAGCACAAGCACACCCAAAA 59.825 50.000 0.00 0.00 45.49 2.44
90 91 0.969917 ACAGCACAAGCACACCCAAA 60.970 50.000 0.00 0.00 45.49 3.28
91 92 1.379710 ACAGCACAAGCACACCCAA 60.380 52.632 0.00 0.00 45.49 4.12
92 93 1.823470 GACAGCACAAGCACACCCA 60.823 57.895 0.00 0.00 45.49 4.51
93 94 1.526917 AGACAGCACAAGCACACCC 60.527 57.895 0.00 0.00 45.49 4.61
94 95 1.650912 CAGACAGCACAAGCACACC 59.349 57.895 0.00 0.00 45.49 4.16
95 96 1.009222 GCAGACAGCACAAGCACAC 60.009 57.895 0.00 0.00 45.49 3.82
96 97 3.424300 GCAGACAGCACAAGCACA 58.576 55.556 0.00 0.00 45.49 4.57
106 107 1.471119 ATTCATTGCTGGGCAGACAG 58.529 50.000 0.00 0.00 40.61 3.51
107 108 1.820519 GAATTCATTGCTGGGCAGACA 59.179 47.619 0.00 0.00 40.61 3.41
108 109 2.097825 AGAATTCATTGCTGGGCAGAC 58.902 47.619 8.44 0.00 40.61 3.51
109 110 2.519771 AGAATTCATTGCTGGGCAGA 57.480 45.000 8.44 0.00 40.61 4.26
110 111 4.724074 TTTAGAATTCATTGCTGGGCAG 57.276 40.909 8.44 0.00 40.61 4.85
111 112 5.046448 ACATTTTAGAATTCATTGCTGGGCA 60.046 36.000 8.44 0.00 36.47 5.36
112 113 5.422145 ACATTTTAGAATTCATTGCTGGGC 58.578 37.500 8.44 0.00 0.00 5.36
113 114 7.592533 CGATACATTTTAGAATTCATTGCTGGG 59.407 37.037 8.44 0.00 0.00 4.45
114 115 7.592533 CCGATACATTTTAGAATTCATTGCTGG 59.407 37.037 8.44 0.00 0.00 4.85
115 116 7.592533 CCCGATACATTTTAGAATTCATTGCTG 59.407 37.037 8.44 2.35 0.00 4.41
116 117 7.285401 ACCCGATACATTTTAGAATTCATTGCT 59.715 33.333 8.44 0.00 0.00 3.91
117 118 7.425606 ACCCGATACATTTTAGAATTCATTGC 58.574 34.615 8.44 0.00 0.00 3.56
118 119 7.798516 CGACCCGATACATTTTAGAATTCATTG 59.201 37.037 8.44 0.44 0.00 2.82
119 120 7.497909 ACGACCCGATACATTTTAGAATTCATT 59.502 33.333 8.44 0.00 0.00 2.57
120 121 6.990349 ACGACCCGATACATTTTAGAATTCAT 59.010 34.615 8.44 0.00 0.00 2.57
121 122 6.342906 ACGACCCGATACATTTTAGAATTCA 58.657 36.000 8.44 0.00 0.00 2.57
122 123 6.839820 ACGACCCGATACATTTTAGAATTC 57.160 37.500 0.00 0.00 0.00 2.17
123 124 6.457799 GCAACGACCCGATACATTTTAGAATT 60.458 38.462 0.00 0.00 0.00 2.17
124 125 5.007332 GCAACGACCCGATACATTTTAGAAT 59.993 40.000 0.00 0.00 0.00 2.40
125 126 4.330620 GCAACGACCCGATACATTTTAGAA 59.669 41.667 0.00 0.00 0.00 2.10
126 127 3.866910 GCAACGACCCGATACATTTTAGA 59.133 43.478 0.00 0.00 0.00 2.10
127 128 3.869246 AGCAACGACCCGATACATTTTAG 59.131 43.478 0.00 0.00 0.00 1.85
128 129 3.864243 AGCAACGACCCGATACATTTTA 58.136 40.909 0.00 0.00 0.00 1.52
129 130 2.706890 AGCAACGACCCGATACATTTT 58.293 42.857 0.00 0.00 0.00 1.82
130 131 2.396590 AGCAACGACCCGATACATTT 57.603 45.000 0.00 0.00 0.00 2.32
131 132 3.746045 ATAGCAACGACCCGATACATT 57.254 42.857 0.00 0.00 0.00 2.71
132 133 4.705507 AGATATAGCAACGACCCGATACAT 59.294 41.667 0.00 0.00 0.00 2.29
133 134 4.077108 AGATATAGCAACGACCCGATACA 58.923 43.478 0.00 0.00 0.00 2.29
134 135 4.698583 AGATATAGCAACGACCCGATAC 57.301 45.455 0.00 0.00 0.00 2.24
135 136 9.433153 CTATATAGATATAGCAACGACCCGATA 57.567 37.037 3.44 0.00 36.77 2.92
136 137 8.325421 CTATATAGATATAGCAACGACCCGAT 57.675 38.462 3.44 0.00 36.77 4.18
137 138 7.725818 CTATATAGATATAGCAACGACCCGA 57.274 40.000 3.44 0.00 36.77 5.14
148 149 6.570672 TTTCGCCCCGCTATATAGATATAG 57.429 41.667 14.16 10.90 43.16 1.31
149 150 5.048224 GCTTTCGCCCCGCTATATAGATATA 60.048 44.000 14.16 0.00 0.00 0.86
150 151 4.262079 GCTTTCGCCCCGCTATATAGATAT 60.262 45.833 14.16 0.00 0.00 1.63
151 152 3.067742 GCTTTCGCCCCGCTATATAGATA 59.932 47.826 14.16 0.00 0.00 1.98
152 153 2.159085 GCTTTCGCCCCGCTATATAGAT 60.159 50.000 14.16 0.00 0.00 1.98
153 154 1.203994 GCTTTCGCCCCGCTATATAGA 59.796 52.381 14.16 0.00 0.00 1.98
154 155 1.641577 GCTTTCGCCCCGCTATATAG 58.358 55.000 5.30 5.30 0.00 1.31
155 156 3.826637 GCTTTCGCCCCGCTATATA 57.173 52.632 0.00 0.00 0.00 0.86
156 157 4.695560 GCTTTCGCCCCGCTATAT 57.304 55.556 0.00 0.00 0.00 0.86
168 169 8.819643 ATACTACTTCATCGAAATAGGCTTTC 57.180 34.615 0.00 0.00 0.00 2.62
170 171 9.915629 CTTATACTACTTCATCGAAATAGGCTT 57.084 33.333 0.00 0.00 0.00 4.35
171 172 9.080097 ACTTATACTACTTCATCGAAATAGGCT 57.920 33.333 0.00 0.00 0.00 4.58
172 173 9.130312 CACTTATACTACTTCATCGAAATAGGC 57.870 37.037 0.00 0.00 0.00 3.93
215 216 2.366590 ACCTACGGTCGAAAAAGAAGGT 59.633 45.455 0.00 0.00 0.00 3.50
229 237 0.529378 AAACTGCGGTAGACCTACGG 59.471 55.000 0.00 9.52 38.79 4.02
277 285 3.004419 TCTCTCGCTCTTTCTTGAACGAA 59.996 43.478 0.00 0.00 34.76 3.85
278 286 2.552743 TCTCTCGCTCTTTCTTGAACGA 59.447 45.455 0.00 0.00 34.15 3.85
286 294 1.261089 GCATGCATCTCTCGCTCTTTC 59.739 52.381 14.21 0.00 0.00 2.62
308 316 2.660189 TACCCTTTTTCTAGACGCGG 57.340 50.000 12.47 0.00 0.00 6.46
431 450 0.442310 GCATAGTTTGAGTTCGCGCA 59.558 50.000 8.75 0.00 0.00 6.09
458 477 2.307098 ACTTGGAATTCACTGGGAGAGG 59.693 50.000 7.93 0.00 0.00 3.69
459 478 3.604582 GACTTGGAATTCACTGGGAGAG 58.395 50.000 7.93 0.00 0.00 3.20
460 479 2.305927 GGACTTGGAATTCACTGGGAGA 59.694 50.000 7.93 0.00 0.00 3.71
461 480 2.040278 TGGACTTGGAATTCACTGGGAG 59.960 50.000 7.93 0.00 0.00 4.30
462 481 2.061848 TGGACTTGGAATTCACTGGGA 58.938 47.619 7.93 0.00 0.00 4.37
463 482 2.162681 GTGGACTTGGAATTCACTGGG 58.837 52.381 7.93 0.00 0.00 4.45
464 483 1.806542 CGTGGACTTGGAATTCACTGG 59.193 52.381 7.93 0.00 0.00 4.00
465 484 1.197721 GCGTGGACTTGGAATTCACTG 59.802 52.381 7.93 0.00 0.00 3.66
466 485 1.202758 TGCGTGGACTTGGAATTCACT 60.203 47.619 7.93 0.00 0.00 3.41
467 486 1.069227 GTGCGTGGACTTGGAATTCAC 60.069 52.381 7.93 0.00 0.00 3.18
711 749 0.520827 GAGAGTACAGACGCGAACGG 60.521 60.000 15.93 9.92 46.04 4.44
716 754 1.591158 GAGAGAGAGAGTACAGACGCG 59.409 57.143 3.53 3.53 0.00 6.01
719 757 5.104900 AGGAAGAGAGAGAGAGAGTACAGAC 60.105 48.000 0.00 0.00 0.00 3.51
858 899 3.342377 TTTGACTTGCGTGGATGGATA 57.658 42.857 0.00 0.00 0.00 2.59
859 900 2.198827 TTTGACTTGCGTGGATGGAT 57.801 45.000 0.00 0.00 0.00 3.41
860 901 1.879380 CTTTTGACTTGCGTGGATGGA 59.121 47.619 0.00 0.00 0.00 3.41
861 902 1.068333 CCTTTTGACTTGCGTGGATGG 60.068 52.381 0.00 0.00 0.00 3.51
862 903 1.068333 CCCTTTTGACTTGCGTGGATG 60.068 52.381 0.00 0.00 0.00 3.51
863 904 1.247567 CCCTTTTGACTTGCGTGGAT 58.752 50.000 0.00 0.00 0.00 3.41
864 905 0.821711 CCCCTTTTGACTTGCGTGGA 60.822 55.000 0.00 0.00 0.00 4.02
952 997 4.554363 CTCCTACACCCTCGCGCG 62.554 72.222 26.76 26.76 0.00 6.86
962 1007 1.702699 TTCCCCCTCCTACTCCTACA 58.297 55.000 0.00 0.00 0.00 2.74
978 1024 2.188207 GGAGGCCTCTCGCTTTCC 59.812 66.667 31.36 10.30 40.85 3.13
1523 1572 1.136057 GTGCGGCTGCTGTTTACTTAC 60.136 52.381 20.27 0.59 43.34 2.34
1524 1573 1.153353 GTGCGGCTGCTGTTTACTTA 58.847 50.000 20.27 0.00 43.34 2.24
1525 1574 1.841663 CGTGCGGCTGCTGTTTACTT 61.842 55.000 20.27 0.00 43.34 2.24
1526 1575 2.317609 CGTGCGGCTGCTGTTTACT 61.318 57.895 20.27 0.00 43.34 2.24
1557 1606 0.037882 CGGATCGGATGATGGTGGAG 60.038 60.000 0.00 0.00 34.09 3.86
1596 1652 5.116180 TGAATCGGAAATAAAGATCTGCGT 58.884 37.500 0.00 0.00 0.00 5.24
1713 1774 1.528542 GGCGCCCTATCCCTTTTCC 60.529 63.158 18.11 0.00 0.00 3.13
1719 1780 2.660064 ATCATCGGCGCCCTATCCC 61.660 63.158 23.46 0.00 0.00 3.85
1904 1974 5.045869 CCCAGTCTTGTGGACCTTATCTAAA 60.046 44.000 0.00 0.00 45.54 1.85
1914 1986 0.602905 CCGAACCCAGTCTTGTGGAC 60.603 60.000 0.00 0.00 44.80 4.02
1985 2065 2.656422 CGAGCACGCCAAATTAGTTTTG 59.344 45.455 0.00 0.00 43.64 2.44
1990 2070 1.071239 CGATCGAGCACGCCAAATTAG 60.071 52.381 10.26 0.00 39.58 1.73
2010 2090 2.427095 ACCAAAACCAACTCTTGTGAGC 59.573 45.455 0.00 0.00 43.85 4.26
2115 2205 6.096282 TGCAACGAGGATATTCGGATCATATA 59.904 38.462 0.00 0.00 44.57 0.86
2154 2258 7.148885 CGTAAAACACAACAAGAACAACAATGT 60.149 33.333 0.00 0.00 43.14 2.71
2179 2283 0.936297 GACAACAAAAGGCAGCTGCG 60.936 55.000 31.19 19.65 43.26 5.18
2201 2305 0.169672 CATGCTGCCAGTCCGAAAAG 59.830 55.000 0.00 0.00 0.00 2.27
2218 2322 4.778213 TTCTATAAGTTGAGCAGGCCAT 57.222 40.909 5.01 0.00 0.00 4.40
2273 2388 4.038522 TCAAAATTTTGGAGACGATGGCAA 59.961 37.500 26.45 3.93 38.66 4.52
2298 2440 2.202440 CGCGGTGTCTCCTGTACG 60.202 66.667 0.00 0.00 0.00 3.67
2315 2457 5.428253 TCTCCAAACCACTAGCATAATCAC 58.572 41.667 0.00 0.00 0.00 3.06
2334 2476 2.371910 GGCTACGCCTGATAATCTCC 57.628 55.000 0.00 0.00 46.69 3.71
2412 2622 7.867752 ACTAGAGCTAGACTAAATGATTCGAC 58.132 38.462 11.28 0.00 36.97 4.20
2542 2764 2.289002 GGAAGAGCGCCATTCAATACTG 59.711 50.000 20.06 0.00 0.00 2.74
2559 2781 4.244066 CGGCATTATGATCTCAGAGGAAG 58.756 47.826 0.00 0.00 0.00 3.46
2622 2846 2.159272 GAACAAGCTGGACGCGACAC 62.159 60.000 15.93 2.25 45.59 3.67
2668 2892 7.504922 GCAATCATGTGCGAGTTTTTATTTA 57.495 32.000 0.00 0.00 34.21 1.40
2780 3049 4.634443 ACAACCCTGTATTTCTAATCGTGC 59.366 41.667 0.00 0.00 32.54 5.34
2796 3065 2.073816 CGACTGCGAATTAACAACCCT 58.926 47.619 0.00 0.00 40.82 4.34
2808 3077 3.775661 TTATGTCTCATTCGACTGCGA 57.224 42.857 0.00 0.00 46.33 5.10
2809 3078 4.044426 TGATTATGTCTCATTCGACTGCG 58.956 43.478 0.00 0.00 35.00 5.18
2810 3079 5.973651 TTGATTATGTCTCATTCGACTGC 57.026 39.130 0.00 0.00 35.00 4.40
2811 3080 8.362860 AGATTTGATTATGTCTCATTCGACTG 57.637 34.615 0.00 0.00 35.00 3.51
2812 3081 8.200120 TGAGATTTGATTATGTCTCATTCGACT 58.800 33.333 0.16 0.00 41.40 4.18
2813 3082 8.357796 TGAGATTTGATTATGTCTCATTCGAC 57.642 34.615 0.16 0.00 41.40 4.20
2814 3083 8.200120 ACTGAGATTTGATTATGTCTCATTCGA 58.800 33.333 4.59 0.00 44.18 3.71
2815 3084 8.362860 ACTGAGATTTGATTATGTCTCATTCG 57.637 34.615 4.59 0.00 44.18 3.34
2816 3085 8.486383 CGACTGAGATTTGATTATGTCTCATTC 58.514 37.037 4.59 7.65 44.18 2.67
2817 3086 8.200120 TCGACTGAGATTTGATTATGTCTCATT 58.800 33.333 4.59 0.00 44.18 2.57
2818 3087 7.720442 TCGACTGAGATTTGATTATGTCTCAT 58.280 34.615 4.59 0.00 44.18 2.90
2819 3088 7.100458 TCGACTGAGATTTGATTATGTCTCA 57.900 36.000 4.15 4.15 43.34 3.27
2820 3089 7.359097 GCATCGACTGAGATTTGATTATGTCTC 60.359 40.741 0.00 0.00 38.03 3.36
2821 3090 6.423302 GCATCGACTGAGATTTGATTATGTCT 59.577 38.462 0.00 0.00 0.00 3.41
2822 3091 6.423302 AGCATCGACTGAGATTTGATTATGTC 59.577 38.462 0.00 0.00 0.00 3.06
2823 3092 6.286758 AGCATCGACTGAGATTTGATTATGT 58.713 36.000 0.00 0.00 0.00 2.29
2824 3093 6.782298 AGCATCGACTGAGATTTGATTATG 57.218 37.500 0.00 0.00 0.00 1.90
2825 3094 8.893219 TTTAGCATCGACTGAGATTTGATTAT 57.107 30.769 0.00 0.00 0.00 1.28
2826 3095 8.893219 ATTTAGCATCGACTGAGATTTGATTA 57.107 30.769 0.00 0.00 0.00 1.75
2827 3096 7.798596 ATTTAGCATCGACTGAGATTTGATT 57.201 32.000 0.00 0.00 0.00 2.57
2828 3097 7.307042 CGAATTTAGCATCGACTGAGATTTGAT 60.307 37.037 0.00 0.00 41.43 2.57
2829 3098 6.019559 CGAATTTAGCATCGACTGAGATTTGA 60.020 38.462 0.00 0.00 41.43 2.69
2830 3099 6.125419 CGAATTTAGCATCGACTGAGATTTG 58.875 40.000 0.00 0.00 41.43 2.32
2831 3100 5.812642 ACGAATTTAGCATCGACTGAGATTT 59.187 36.000 1.84 0.00 41.43 2.17
2832 3101 5.352284 ACGAATTTAGCATCGACTGAGATT 58.648 37.500 1.84 0.00 41.43 2.40
2833 3102 4.938080 ACGAATTTAGCATCGACTGAGAT 58.062 39.130 1.84 0.00 41.43 2.75
2834 3103 4.371855 ACGAATTTAGCATCGACTGAGA 57.628 40.909 1.84 0.00 41.43 3.27
2835 3104 4.677378 CCTACGAATTTAGCATCGACTGAG 59.323 45.833 1.84 0.00 41.43 3.35
2836 3105 4.337274 TCCTACGAATTTAGCATCGACTGA 59.663 41.667 1.84 0.00 41.43 3.41
2837 3106 4.607955 TCCTACGAATTTAGCATCGACTG 58.392 43.478 1.84 0.00 41.43 3.51
2838 3107 4.913335 TCCTACGAATTTAGCATCGACT 57.087 40.909 1.84 0.00 41.43 4.18
2839 3108 6.526566 AAATCCTACGAATTTAGCATCGAC 57.473 37.500 1.84 0.00 41.43 4.20
2840 3109 7.204604 TGTAAATCCTACGAATTTAGCATCGA 58.795 34.615 1.84 0.00 41.43 3.59
2841 3110 7.402811 TGTAAATCCTACGAATTTAGCATCG 57.597 36.000 0.00 0.00 44.33 3.84
2842 3111 8.162880 CGATGTAAATCCTACGAATTTAGCATC 58.837 37.037 0.00 8.71 32.63 3.91
2843 3112 7.870954 TCGATGTAAATCCTACGAATTTAGCAT 59.129 33.333 0.00 2.03 0.00 3.79
2844 3113 7.204604 TCGATGTAAATCCTACGAATTTAGCA 58.795 34.615 0.00 0.00 0.00 3.49
2845 3114 7.594015 TCTCGATGTAAATCCTACGAATTTAGC 59.406 37.037 0.00 0.00 0.00 3.09
2846 3115 9.627395 ATCTCGATGTAAATCCTACGAATTTAG 57.373 33.333 0.00 0.00 0.00 1.85
2847 3116 9.622004 GATCTCGATGTAAATCCTACGAATTTA 57.378 33.333 0.00 0.00 0.00 1.40
2848 3117 7.599245 GGATCTCGATGTAAATCCTACGAATTT 59.401 37.037 0.00 0.00 35.75 1.82
2849 3118 7.091443 GGATCTCGATGTAAATCCTACGAATT 58.909 38.462 0.00 0.00 35.75 2.17
2850 3119 6.350277 GGGATCTCGATGTAAATCCTACGAAT 60.350 42.308 0.00 0.00 38.20 3.34
2851 3120 5.048224 GGGATCTCGATGTAAATCCTACGAA 60.048 44.000 0.00 0.00 38.20 3.85
2852 3121 4.458295 GGGATCTCGATGTAAATCCTACGA 59.542 45.833 0.00 0.00 38.20 3.43
2853 3122 4.459685 AGGGATCTCGATGTAAATCCTACG 59.540 45.833 0.00 0.00 38.20 3.51
2854 3123 5.715070 CAGGGATCTCGATGTAAATCCTAC 58.285 45.833 0.00 0.00 38.20 3.18
2855 3124 4.220821 GCAGGGATCTCGATGTAAATCCTA 59.779 45.833 0.00 0.00 38.20 2.94
2856 3125 3.007398 GCAGGGATCTCGATGTAAATCCT 59.993 47.826 0.00 0.00 38.20 3.24
2857 3126 3.244215 TGCAGGGATCTCGATGTAAATCC 60.244 47.826 0.00 0.00 37.53 3.01
2858 3127 3.995199 TGCAGGGATCTCGATGTAAATC 58.005 45.455 0.00 0.00 0.00 2.17
2859 3128 4.422073 TTGCAGGGATCTCGATGTAAAT 57.578 40.909 0.00 0.00 0.00 1.40
2860 3129 3.904800 TTGCAGGGATCTCGATGTAAA 57.095 42.857 0.00 0.00 0.00 2.01
2861 3130 3.904800 TTTGCAGGGATCTCGATGTAA 57.095 42.857 0.00 0.00 0.00 2.41
2862 3131 4.422073 AATTTGCAGGGATCTCGATGTA 57.578 40.909 0.00 0.00 0.00 2.29
2863 3132 3.287867 AATTTGCAGGGATCTCGATGT 57.712 42.857 0.00 0.00 0.00 3.06
2864 3133 4.644103 AAAATTTGCAGGGATCTCGATG 57.356 40.909 0.00 0.00 0.00 3.84
2865 3134 4.952335 AGAAAAATTTGCAGGGATCTCGAT 59.048 37.500 0.00 0.00 0.00 3.59
2866 3135 4.335416 AGAAAAATTTGCAGGGATCTCGA 58.665 39.130 0.00 0.00 0.00 4.04
2867 3136 4.708726 AGAAAAATTTGCAGGGATCTCG 57.291 40.909 0.00 0.00 0.00 4.04
2868 3137 7.734924 AAAAAGAAAAATTTGCAGGGATCTC 57.265 32.000 0.00 0.00 0.00 2.75
2869 3138 8.432013 ACTAAAAAGAAAAATTTGCAGGGATCT 58.568 29.630 0.00 0.00 0.00 2.75
2870 3139 8.607441 ACTAAAAAGAAAAATTTGCAGGGATC 57.393 30.769 0.00 0.00 0.00 3.36
2871 3140 8.978874 AACTAAAAAGAAAAATTTGCAGGGAT 57.021 26.923 0.00 0.00 0.00 3.85
2872 3141 8.800370 AAACTAAAAAGAAAAATTTGCAGGGA 57.200 26.923 0.00 0.00 0.00 4.20
2873 3142 9.853555 AAAAACTAAAAAGAAAAATTTGCAGGG 57.146 25.926 0.00 0.00 0.00 4.45
2899 3168 9.790389 AGTGACATAACATGTAAAAACGAAAAA 57.210 25.926 0.00 0.00 45.03 1.94
2900 3169 9.790389 AAGTGACATAACATGTAAAAACGAAAA 57.210 25.926 0.00 0.00 45.03 2.29
2901 3170 9.227490 CAAGTGACATAACATGTAAAAACGAAA 57.773 29.630 0.00 0.00 45.03 3.46
2902 3171 8.613482 TCAAGTGACATAACATGTAAAAACGAA 58.387 29.630 0.00 0.00 45.03 3.85
2903 3172 8.065407 GTCAAGTGACATAACATGTAAAAACGA 58.935 33.333 0.00 0.00 45.03 3.85
2904 3173 8.199527 GTCAAGTGACATAACATGTAAAAACG 57.800 34.615 0.00 0.00 45.03 3.60
2928 3197 9.562408 TCGACTGAGACTTAATCAGATATAAGT 57.438 33.333 10.77 13.52 45.80 2.24
2929 3198 9.820229 GTCGACTGAGACTTAATCAGATATAAG 57.180 37.037 8.70 9.24 45.80 1.73
2944 3213 1.080434 GGGTGCAGTCGACTGAGAC 60.080 63.158 42.03 33.90 46.59 3.36
2945 3214 0.827925 AAGGGTGCAGTCGACTGAGA 60.828 55.000 42.03 27.13 46.59 3.27
2946 3215 0.888619 TAAGGGTGCAGTCGACTGAG 59.111 55.000 42.03 22.33 46.59 3.35
2947 3216 0.888619 CTAAGGGTGCAGTCGACTGA 59.111 55.000 42.03 26.44 46.59 3.41
2948 3217 0.888619 TCTAAGGGTGCAGTCGACTG 59.111 55.000 35.80 35.80 46.40 3.51
2949 3218 1.629043 TTCTAAGGGTGCAGTCGACT 58.371 50.000 13.58 13.58 0.00 4.18
2950 3219 2.450609 TTTCTAAGGGTGCAGTCGAC 57.549 50.000 7.70 7.70 0.00 4.20
2951 3220 4.499188 CGATATTTCTAAGGGTGCAGTCGA 60.499 45.833 0.00 0.00 0.00 4.20
2952 3221 3.736252 CGATATTTCTAAGGGTGCAGTCG 59.264 47.826 0.00 0.00 0.00 4.18
2953 3222 4.694339 ACGATATTTCTAAGGGTGCAGTC 58.306 43.478 0.00 0.00 0.00 3.51
2954 3223 4.755266 ACGATATTTCTAAGGGTGCAGT 57.245 40.909 0.00 0.00 0.00 4.40
2955 3224 6.347725 GCATTACGATATTTCTAAGGGTGCAG 60.348 42.308 0.00 0.00 0.00 4.41
2956 3225 5.468746 GCATTACGATATTTCTAAGGGTGCA 59.531 40.000 0.00 0.00 0.00 4.57
2957 3226 5.701290 AGCATTACGATATTTCTAAGGGTGC 59.299 40.000 0.00 0.00 0.00 5.01
2958 3227 8.240883 GTAGCATTACGATATTTCTAAGGGTG 57.759 38.462 0.00 0.00 0.00 4.61
3076 3360 2.989824 ACGTAGCCGTCCTGCAGT 60.990 61.111 13.81 0.00 46.28 4.40
3374 3663 1.532437 TGCAATGCAAGAACGTCAGAG 59.468 47.619 5.01 0.00 34.76 3.35
3663 3952 3.942748 AGAGCTAGAACTGGAGAAGTACG 59.057 47.826 0.00 0.00 38.56 3.67
3667 3956 4.202010 GCACTAGAGCTAGAACTGGAGAAG 60.202 50.000 11.28 0.00 36.97 2.85
3668 3957 3.697045 GCACTAGAGCTAGAACTGGAGAA 59.303 47.826 11.28 0.00 36.97 2.87
3673 3964 2.162608 ACGTGCACTAGAGCTAGAACTG 59.837 50.000 16.19 1.16 36.97 3.16
3705 3996 1.406539 CATTCCCATTTCCAAGAGCGG 59.593 52.381 0.00 0.00 0.00 5.52
3736 4027 2.681848 GACCGACGAGATGTAGAGGAAA 59.318 50.000 0.00 0.00 0.00 3.13
4135 4429 3.164269 CTCCCCTGGACCATCCCG 61.164 72.222 0.00 0.00 35.03 5.14
4303 4597 0.376852 TGTGACACTGCAAAGCGTTC 59.623 50.000 7.20 0.00 0.00 3.95
4325 4619 0.734253 CACTCCACTCTGCGCAGTAC 60.734 60.000 34.70 0.00 0.00 2.73
4390 4684 3.436015 CCTGTTCTGAGCTGAAACATCAG 59.564 47.826 0.00 1.50 41.47 2.90
4412 4706 3.270962 TCCGTTTTGCAACCGATAAAC 57.729 42.857 16.88 8.88 0.00 2.01
4609 4903 9.358406 TCTATTTTCGACACAACCCTATCTATA 57.642 33.333 0.00 0.00 0.00 1.31
4628 4922 0.322187 AGGTTGCGCCGGTCTATTTT 60.322 50.000 4.18 0.00 43.70 1.82
4707 5001 3.135530 GGTCTGCCTTCTATGGTCAGAAT 59.864 47.826 0.00 0.00 39.78 2.40
4717 5011 1.544691 GACTCGTTGGTCTGCCTTCTA 59.455 52.381 0.00 0.00 35.27 2.10
4728 5022 1.217882 GTGACTTGGTGACTCGTTGG 58.782 55.000 0.00 0.00 0.00 3.77
4729 5023 1.217882 GGTGACTTGGTGACTCGTTG 58.782 55.000 0.00 0.00 0.00 4.10
4734 5028 4.974645 TTAATCTGGTGACTTGGTGACT 57.025 40.909 0.00 0.00 0.00 3.41
4735 5029 4.330074 CGATTAATCTGGTGACTTGGTGAC 59.670 45.833 13.45 0.00 0.00 3.67
4736 5030 4.503910 CGATTAATCTGGTGACTTGGTGA 58.496 43.478 13.45 0.00 0.00 4.02
4737 5031 3.623060 CCGATTAATCTGGTGACTTGGTG 59.377 47.826 13.45 0.00 0.00 4.17
4738 5032 3.873910 CCGATTAATCTGGTGACTTGGT 58.126 45.455 13.45 0.00 0.00 3.67
4739 5033 2.614057 GCCGATTAATCTGGTGACTTGG 59.386 50.000 20.23 10.44 0.00 3.61
4740 5034 2.285220 CGCCGATTAATCTGGTGACTTG 59.715 50.000 23.78 4.75 34.92 3.16
4741 5035 2.550978 CGCCGATTAATCTGGTGACTT 58.449 47.619 23.78 0.00 34.92 3.01
4772 5066 1.780919 AGGGAAGGTTGCACTTTAGGT 59.219 47.619 0.00 0.00 0.00 3.08
4777 5071 2.091885 TCTGAAAGGGAAGGTTGCACTT 60.092 45.455 0.00 0.00 0.00 3.16
4894 5188 3.188786 GCTTCCGATGCGACGCTT 61.189 61.111 22.08 15.30 0.00 4.68
4897 5191 1.011904 CATTGCTTCCGATGCGACG 60.012 57.895 0.00 0.00 0.00 5.12
4939 5233 6.647067 AGCTATTGACTAACCGATTTCTATGC 59.353 38.462 0.00 0.00 0.00 3.14
4977 5271 3.865164 TCGTGACGATTTCCAGAATCATG 59.135 43.478 2.39 0.00 0.00 3.07
4979 5273 3.511699 CTCGTGACGATTTCCAGAATCA 58.488 45.455 8.60 0.00 34.61 2.57
5013 5307 3.870633 AGTACTCTCAATTCCCACGAC 57.129 47.619 0.00 0.00 0.00 4.34
5023 5317 5.708697 TCTCATCAACGGTAAGTACTCTCAA 59.291 40.000 0.00 0.00 0.00 3.02
5179 5473 3.244875 ACACACCTGCCAATAGTTGATGA 60.245 43.478 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.