Multiple sequence alignment - TraesCS6D01G261300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G261300 chr6D 100.000 4759 0 0 1 4759 369657103 369661861 0.000000e+00 8789
1 TraesCS6D01G261300 chr6D 86.218 624 64 12 1 604 358398983 358399604 0.000000e+00 656
2 TraesCS6D01G261300 chr6D 89.474 152 13 3 456 604 259222873 259223024 6.290000e-44 189
3 TraesCS6D01G261300 chr6A 92.621 4106 220 36 680 4759 510861627 510865675 0.000000e+00 5827
4 TraesCS6D01G261300 chr6B 90.732 2212 136 24 608 2786 555289605 555291780 0.000000e+00 2885
5 TraesCS6D01G261300 chr6B 94.991 1717 74 4 3045 4759 555292295 555294001 0.000000e+00 2684
6 TraesCS6D01G261300 chr6B 83.550 231 29 6 2811 3035 555291771 555291998 1.740000e-49 207
7 TraesCS6D01G261300 chr5D 85.897 624 64 9 1 603 313790613 313791233 1.120000e-180 643
8 TraesCS6D01G261300 chr5D 90.909 143 11 2 462 603 3039525 3039666 1.750000e-44 191
9 TraesCS6D01G261300 chr5D 89.333 150 14 2 457 604 212327243 212327094 2.260000e-43 187
10 TraesCS6D01G261300 chr5D 81.081 148 20 7 4619 4759 278467807 278467661 1.400000e-20 111
11 TraesCS6D01G261300 chr5B 85.370 622 71 13 1 605 625158174 625157556 1.120000e-175 627
12 TraesCS6D01G261300 chr5B 86.043 609 53 17 1 604 275364598 275364017 4.040000e-175 625
13 TraesCS6D01G261300 chr5B 85.209 622 72 12 1 605 628736295 628735677 5.230000e-174 621
14 TraesCS6D01G261300 chr5B 80.420 143 20 7 4624 4759 316623619 316623478 8.430000e-18 102
15 TraesCS6D01G261300 chr2D 85.577 624 58 13 1 604 356731187 356730576 4.040000e-175 625
16 TraesCS6D01G261300 chr4D 85.120 625 70 10 1 604 19639638 19640260 6.770000e-173 617
17 TraesCS6D01G261300 chr4D 90.972 144 12 1 462 604 384969845 384969702 4.860000e-45 193
18 TraesCS6D01G261300 chr3B 85.161 620 66 12 1 604 697461603 697462212 3.150000e-171 612
19 TraesCS6D01G261300 chr3B 85.171 263 35 3 346 604 172332579 172332841 2.820000e-67 267
20 TraesCS6D01G261300 chr3D 85.024 621 56 13 12 604 587639106 587639717 8.820000e-167 597
21 TraesCS6D01G261300 chr3D 90.132 152 12 3 456 604 146893250 146893099 1.350000e-45 195
22 TraesCS6D01G261300 chr3D 89.474 152 13 3 456 604 463714390 463714239 6.290000e-44 189
23 TraesCS6D01G261300 chr1D 89.474 152 13 3 456 604 255342569 255342720 6.290000e-44 189
24 TraesCS6D01G261300 chr1D 89.404 151 13 3 457 604 75470660 75470810 2.260000e-43 187
25 TraesCS6D01G261300 chr5A 81.081 148 20 7 4619 4759 370096974 370097120 1.400000e-20 111
26 TraesCS6D01G261300 chr5A 80.405 148 21 7 4619 4759 370042804 370042658 6.510000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G261300 chr6D 369657103 369661861 4758 False 8789.000000 8789 100.000000 1 4759 1 chr6D.!!$F3 4758
1 TraesCS6D01G261300 chr6D 358398983 358399604 621 False 656.000000 656 86.218000 1 604 1 chr6D.!!$F2 603
2 TraesCS6D01G261300 chr6A 510861627 510865675 4048 False 5827.000000 5827 92.621000 680 4759 1 chr6A.!!$F1 4079
3 TraesCS6D01G261300 chr6B 555289605 555294001 4396 False 1925.333333 2885 89.757667 608 4759 3 chr6B.!!$F1 4151
4 TraesCS6D01G261300 chr5D 313790613 313791233 620 False 643.000000 643 85.897000 1 603 1 chr5D.!!$F2 602
5 TraesCS6D01G261300 chr5B 625157556 625158174 618 True 627.000000 627 85.370000 1 605 1 chr5B.!!$R3 604
6 TraesCS6D01G261300 chr5B 275364017 275364598 581 True 625.000000 625 86.043000 1 604 1 chr5B.!!$R1 603
7 TraesCS6D01G261300 chr5B 628735677 628736295 618 True 621.000000 621 85.209000 1 605 1 chr5B.!!$R4 604
8 TraesCS6D01G261300 chr2D 356730576 356731187 611 True 625.000000 625 85.577000 1 604 1 chr2D.!!$R1 603
9 TraesCS6D01G261300 chr4D 19639638 19640260 622 False 617.000000 617 85.120000 1 604 1 chr4D.!!$F1 603
10 TraesCS6D01G261300 chr3B 697461603 697462212 609 False 612.000000 612 85.161000 1 604 1 chr3B.!!$F2 603
11 TraesCS6D01G261300 chr3D 587639106 587639717 611 False 597.000000 597 85.024000 12 604 1 chr3D.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.030705 AGGCCAGGCAGAAGGAGATA 60.031 55.0 15.19 0.0 0.00 1.98 F
1594 1659 0.034756 TACGCTGAATGTGTGGTGCT 59.965 50.0 0.00 0.0 40.02 4.40 F
1872 1937 0.036952 ACTGCGATGTGGAAGTCTGG 60.037 55.0 0.00 0.0 0.00 3.86 F
2800 2918 0.180171 CATATCGGTTGCAGGGGTCA 59.820 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1838 0.899019 TCCACATGTAGCGCCACTTA 59.101 50.0 7.64 0.0 0.00 2.24 R
3515 3923 0.033504 GAAGGCAGACCAACGAGTCA 59.966 55.0 0.00 0.0 39.34 3.41 R
3516 3924 0.318762 AGAAGGCAGACCAACGAGTC 59.681 55.0 0.00 0.0 39.06 3.36 R
4490 4901 0.741326 ACATCTCGTCGGTCATGGAG 59.259 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.392998 GACATCGAGGCCACCAATGT 60.393 55.000 5.01 10.54 33.45 2.71
69 70 0.829182 CCAAAGCAAAGGAGGTGGCT 60.829 55.000 0.00 0.00 38.45 4.75
104 105 2.936993 GCGTGGACTTGACCAAGATGAT 60.937 50.000 15.84 0.00 41.87 2.45
147 148 0.030705 AGGCCAGGCAGAAGGAGATA 60.031 55.000 15.19 0.00 0.00 1.98
283 287 3.808218 TTGGGGGCTGGCTGTGTTC 62.808 63.158 0.00 0.00 0.00 3.18
287 291 4.329545 GGCTGGCTGTGTTCCCGA 62.330 66.667 0.00 0.00 0.00 5.14
347 354 2.591715 GCTGACTGTGTTGCCGGT 60.592 61.111 1.90 0.00 0.00 5.28
380 387 4.189188 CGGCGAGGACGTGTAGGG 62.189 72.222 0.00 0.00 41.98 3.53
468 493 1.335506 GGCGTTTGAAAAAGATGCGGA 60.336 47.619 0.00 0.00 0.00 5.54
568 606 0.526211 GACAGAATCCGGGCAAAACC 59.474 55.000 0.00 0.00 37.93 3.27
581 619 1.062880 GCAAAACCGACGTCTGTTTGA 59.937 47.619 30.43 0.00 34.35 2.69
606 644 4.069232 CGCTGGAGTTGGCCTCGA 62.069 66.667 3.32 0.00 41.46 4.04
607 645 2.586792 GCTGGAGTTGGCCTCGAT 59.413 61.111 3.32 0.00 41.46 3.59
608 646 1.817099 GCTGGAGTTGGCCTCGATG 60.817 63.158 3.32 0.00 41.46 3.84
609 647 1.599047 CTGGAGTTGGCCTCGATGT 59.401 57.895 3.32 0.00 41.46 3.06
610 648 0.824109 CTGGAGTTGGCCTCGATGTA 59.176 55.000 3.32 0.00 41.46 2.29
611 649 1.207089 CTGGAGTTGGCCTCGATGTAA 59.793 52.381 3.32 0.00 41.46 2.41
612 650 1.626321 TGGAGTTGGCCTCGATGTAAA 59.374 47.619 3.32 0.00 41.46 2.01
613 651 2.007608 GGAGTTGGCCTCGATGTAAAC 58.992 52.381 3.32 0.00 41.46 2.01
614 652 2.354805 GGAGTTGGCCTCGATGTAAACT 60.355 50.000 3.32 1.80 41.46 2.66
615 653 2.673368 GAGTTGGCCTCGATGTAAACTG 59.327 50.000 3.32 0.00 0.00 3.16
635 673 4.458989 ACTGTTGCGGTATGAATGAATTGT 59.541 37.500 0.00 0.00 0.00 2.71
636 674 5.048083 ACTGTTGCGGTATGAATGAATTGTT 60.048 36.000 0.00 0.00 0.00 2.83
639 677 3.443329 TGCGGTATGAATGAATTGTTGCT 59.557 39.130 0.00 0.00 0.00 3.91
641 679 4.266029 GCGGTATGAATGAATTGTTGCTTG 59.734 41.667 0.00 0.00 0.00 4.01
644 682 6.389091 GGTATGAATGAATTGTTGCTTGTGA 58.611 36.000 0.00 0.00 0.00 3.58
645 683 6.867816 GGTATGAATGAATTGTTGCTTGTGAA 59.132 34.615 0.00 0.00 0.00 3.18
646 684 7.384660 GGTATGAATGAATTGTTGCTTGTGAAA 59.615 33.333 0.00 0.00 0.00 2.69
647 685 7.789273 ATGAATGAATTGTTGCTTGTGAAAA 57.211 28.000 0.00 0.00 0.00 2.29
650 688 9.322773 TGAATGAATTGTTGCTTGTGAAAATTA 57.677 25.926 0.00 0.00 0.00 1.40
653 691 7.629130 TGAATTGTTGCTTGTGAAAATTAAGC 58.371 30.769 3.41 3.41 45.23 3.09
668 716 5.652994 AATTAAGCGGGAAAAAGTGCATA 57.347 34.783 0.00 0.00 0.00 3.14
775 824 2.074230 CTGGCTTTTCCTTGCGTGCA 62.074 55.000 0.00 0.00 35.26 4.57
1003 1056 0.107456 CAATCCGATCCCCCTCACAG 59.893 60.000 0.00 0.00 0.00 3.66
1373 1437 2.832201 GCCGTACCGTAGCCTCCT 60.832 66.667 0.00 0.00 0.00 3.69
1376 1440 1.722636 CCGTACCGTAGCCTCCTCAC 61.723 65.000 0.00 0.00 0.00 3.51
1379 1443 1.578215 TACCGTAGCCTCCTCACCCT 61.578 60.000 0.00 0.00 0.00 4.34
1380 1444 1.686110 CCGTAGCCTCCTCACCCTT 60.686 63.158 0.00 0.00 0.00 3.95
1385 1449 3.787001 CCTCCTCACCCTTCCGCC 61.787 72.222 0.00 0.00 0.00 6.13
1412 1476 1.336755 GCGAATTATGGTGCCCGATTT 59.663 47.619 0.00 0.00 0.00 2.17
1426 1490 2.533232 ATTTGGTGGGGACGGGGA 60.533 61.111 0.00 0.00 0.00 4.81
1438 1502 3.152400 CGGGGACTAGGGTTCGGG 61.152 72.222 0.00 0.00 0.00 5.14
1463 1527 8.872845 GGCAAAATTATTAAGTTGGACATTCTG 58.127 33.333 0.00 0.00 0.00 3.02
1473 1537 4.536090 AGTTGGACATTCTGGGATCAGTAA 59.464 41.667 0.00 0.00 41.59 2.24
1474 1538 4.760530 TGGACATTCTGGGATCAGTAAG 57.239 45.455 0.00 0.00 41.59 2.34
1475 1539 4.104086 TGGACATTCTGGGATCAGTAAGT 58.896 43.478 0.00 0.00 41.59 2.24
1476 1540 5.277250 TGGACATTCTGGGATCAGTAAGTA 58.723 41.667 0.00 0.00 41.59 2.24
1477 1541 5.128827 TGGACATTCTGGGATCAGTAAGTAC 59.871 44.000 0.00 0.00 41.59 2.73
1523 1587 1.200948 TCTCTGATATGATCCGCTGCG 59.799 52.381 16.34 16.34 0.00 5.18
1594 1659 0.034756 TACGCTGAATGTGTGGTGCT 59.965 50.000 0.00 0.00 40.02 4.40
1621 1686 2.666344 GCTTAAGTTAACCCCGTTTGCG 60.666 50.000 4.02 0.00 37.95 4.85
1632 1697 1.002468 CCCGTTTGCGATGATGGATTC 60.002 52.381 0.00 0.00 41.33 2.52
1638 1703 3.756933 TGCGATGATGGATTCTGATCA 57.243 42.857 0.00 0.00 33.77 2.92
1644 1709 6.371389 CGATGATGGATTCTGATCATGTTTG 58.629 40.000 13.24 0.00 39.03 2.93
1683 1748 1.615424 GCCTGAAGGGGTGGAGGTA 60.615 63.158 0.00 0.00 35.18 3.08
1840 1905 4.475944 CCGCTTTAAGGTTGTCATTTCTG 58.524 43.478 0.00 0.00 0.00 3.02
1848 1913 4.338012 AGGTTGTCATTTCTGCATGATCA 58.662 39.130 0.00 0.00 35.60 2.92
1857 1922 4.365899 TTCTGCATGATCATTTCACTGC 57.634 40.909 5.16 7.64 37.11 4.40
1872 1937 0.036952 ACTGCGATGTGGAAGTCTGG 60.037 55.000 0.00 0.00 0.00 3.86
1926 1991 2.223317 TGTGCGTCATATGCTGAATTGC 60.223 45.455 0.00 0.00 35.07 3.56
1976 2041 3.629398 CAGAACCTGTTATTCCTGATGGC 59.371 47.826 0.00 0.00 0.00 4.40
1982 2047 4.141390 CCTGTTATTCCTGATGGCTTACCT 60.141 45.833 0.00 0.00 36.63 3.08
2130 2195 5.982890 ACAATATTCAGAAGTTGGTTGGG 57.017 39.130 13.03 0.00 0.00 4.12
2234 2299 5.116882 AGGAGGTAATGTTGTAATTCTCGC 58.883 41.667 0.00 0.00 0.00 5.03
2243 2308 0.924090 GTAATTCTCGCCACGCTCAG 59.076 55.000 0.00 0.00 0.00 3.35
2255 2320 1.714460 CACGCTCAGTCGTTCTGTTAC 59.286 52.381 9.34 0.00 43.97 2.50
2265 2330 8.827177 TCAGTCGTTCTGTTACAATTCTTAAT 57.173 30.769 9.34 0.00 43.97 1.40
2296 2361 7.780064 TCCTGAAATGAATGTTCTTGAAACAA 58.220 30.769 0.00 0.00 33.42 2.83
2305 2370 4.681744 TGTTCTTGAAACAATGCCAAGTC 58.318 39.130 0.00 0.00 38.61 3.01
2309 2374 2.392662 TGAAACAATGCCAAGTCCCAA 58.607 42.857 0.00 0.00 0.00 4.12
2315 2380 3.511146 ACAATGCCAAGTCCCAACTATTG 59.489 43.478 0.00 0.00 35.36 1.90
2347 2412 5.390387 TCAATGCCTTAGTGGGTTTAAAGT 58.610 37.500 0.00 0.00 36.00 2.66
2348 2413 5.475564 TCAATGCCTTAGTGGGTTTAAAGTC 59.524 40.000 0.00 0.00 36.00 3.01
2359 2424 3.937079 GGGTTTAAAGTCGTGGTATGAGG 59.063 47.826 0.00 0.00 0.00 3.86
2370 2435 5.063564 GTCGTGGTATGAGGTCTTTTGATTC 59.936 44.000 0.00 0.00 0.00 2.52
2374 2439 6.094186 GTGGTATGAGGTCTTTTGATTCTTCC 59.906 42.308 0.00 0.00 0.00 3.46
2377 2442 4.714632 TGAGGTCTTTTGATTCTTCCGTT 58.285 39.130 0.00 0.00 0.00 4.44
2380 2445 4.887655 AGGTCTTTTGATTCTTCCGTTGTT 59.112 37.500 0.00 0.00 0.00 2.83
2388 2453 6.573664 TGATTCTTCCGTTGTTCAATTCAT 57.426 33.333 0.00 0.00 0.00 2.57
2394 2459 6.862608 TCTTCCGTTGTTCAATTCATCATTTG 59.137 34.615 0.00 0.00 0.00 2.32
2461 2545 9.941664 ATTATTCATGTTGAAGCTCTTTAATCG 57.058 29.630 0.00 0.00 40.05 3.34
2481 2565 2.668457 CGTCCTATTGACACTGCTCAAC 59.332 50.000 0.00 0.00 44.71 3.18
2486 2570 6.036517 GTCCTATTGACACTGCTCAACTATTG 59.963 42.308 0.00 0.00 43.85 1.90
2488 2572 6.372659 CCTATTGACACTGCTCAACTATTGTT 59.627 38.462 0.00 0.00 32.95 2.83
2524 2608 1.741770 GCACCTCCTAGCACCAACG 60.742 63.158 0.00 0.00 0.00 4.10
2537 2621 1.737793 CACCAACGGGAAGTAATCTGC 59.262 52.381 0.00 0.00 38.05 4.26
2644 2728 3.826157 CAGGCCTGAACATTTGGTTAAGA 59.174 43.478 29.88 0.00 40.01 2.10
2671 2755 5.077564 GGTAAAAAGATGGAGGTGAAGGTT 58.922 41.667 0.00 0.00 0.00 3.50
2718 2802 3.072476 TCAGGGAAACAGGTTAGTTCTGG 59.928 47.826 0.00 0.00 36.62 3.86
2726 2811 3.502211 ACAGGTTAGTTCTGGCATTTTCG 59.498 43.478 0.00 0.00 36.62 3.46
2770 2855 7.011389 TGTTCTACACTCACAGTTTGATGAAAG 59.989 37.037 0.00 0.00 32.17 2.62
2792 2910 5.470845 GGATACTTATGCATATCGGTTGC 57.529 43.478 7.36 3.61 40.55 4.17
2796 2914 4.557554 TGCATATCGGTTGCAGGG 57.442 55.556 2.05 0.00 44.73 4.45
2797 2915 1.152984 TGCATATCGGTTGCAGGGG 60.153 57.895 2.05 0.00 44.73 4.79
2798 2916 1.152963 GCATATCGGTTGCAGGGGT 60.153 57.895 0.00 0.00 39.90 4.95
2799 2917 1.166531 GCATATCGGTTGCAGGGGTC 61.167 60.000 0.00 0.00 39.90 4.46
2800 2918 0.180171 CATATCGGTTGCAGGGGTCA 59.820 55.000 0.00 0.00 0.00 4.02
2801 2919 0.916086 ATATCGGTTGCAGGGGTCAA 59.084 50.000 0.00 0.00 0.00 3.18
2802 2920 0.916086 TATCGGTTGCAGGGGTCAAT 59.084 50.000 0.00 0.00 0.00 2.57
2803 2921 0.680921 ATCGGTTGCAGGGGTCAATG 60.681 55.000 0.00 0.00 0.00 2.82
2804 2922 2.973082 GGTTGCAGGGGTCAATGC 59.027 61.111 0.00 0.00 42.86 3.56
2805 2923 2.649129 GGTTGCAGGGGTCAATGCC 61.649 63.158 0.00 0.00 41.85 4.40
2806 2924 2.676121 TTGCAGGGGTCAATGCCG 60.676 61.111 0.00 0.00 41.85 5.69
2807 2925 4.738998 TGCAGGGGTCAATGCCGG 62.739 66.667 0.00 0.00 41.85 6.13
2808 2926 4.740822 GCAGGGGTCAATGCCGGT 62.741 66.667 1.90 0.00 36.41 5.28
2809 2927 2.035626 CAGGGGTCAATGCCGGTT 59.964 61.111 1.90 0.00 0.00 4.44
2810 2928 1.606313 CAGGGGTCAATGCCGGTTT 60.606 57.895 1.90 0.00 0.00 3.27
2811 2929 1.155155 AGGGGTCAATGCCGGTTTT 59.845 52.632 1.90 0.00 0.00 2.43
2812 2930 0.406361 AGGGGTCAATGCCGGTTTTA 59.594 50.000 1.90 0.00 0.00 1.52
2813 2931 1.006639 AGGGGTCAATGCCGGTTTTAT 59.993 47.619 1.90 0.00 0.00 1.40
2814 2932 1.136110 GGGGTCAATGCCGGTTTTATG 59.864 52.381 1.90 0.00 0.00 1.90
2815 2933 2.096248 GGGTCAATGCCGGTTTTATGA 58.904 47.619 1.90 0.00 0.00 2.15
2816 2934 2.693074 GGGTCAATGCCGGTTTTATGAT 59.307 45.455 1.90 0.00 0.00 2.45
2817 2935 3.886505 GGGTCAATGCCGGTTTTATGATA 59.113 43.478 1.90 0.00 0.00 2.15
2818 2936 4.023193 GGGTCAATGCCGGTTTTATGATAG 60.023 45.833 1.90 0.00 0.00 2.08
2819 2937 4.537015 GTCAATGCCGGTTTTATGATAGC 58.463 43.478 1.90 0.00 0.00 2.97
2862 2980 8.483758 TCTTATATCCAAGTACTGGTTTTCCTC 58.516 37.037 0.00 0.00 46.51 3.71
2864 2982 4.993705 TCCAAGTACTGGTTTTCCTCAT 57.006 40.909 0.00 0.00 46.51 2.90
2934 3052 9.079833 TCTTAGTCGTTCCTGAAATATTAAACG 57.920 33.333 10.92 10.92 40.43 3.60
2935 3053 8.761575 TTAGTCGTTCCTGAAATATTAAACGT 57.238 30.769 14.22 0.00 40.10 3.99
2939 3057 8.011106 GTCGTTCCTGAAATATTAAACGTTTGA 58.989 33.333 23.46 16.02 40.10 2.69
2990 3112 2.421399 GGCAAATGAGAGCTGGGCC 61.421 63.158 0.00 0.00 0.00 5.80
2998 3120 2.200081 TGAGAGCTGGGCCTTATTTCT 58.800 47.619 4.53 0.00 0.00 2.52
3001 3124 1.212935 GAGCTGGGCCTTATTTCTGGA 59.787 52.381 4.53 0.00 0.00 3.86
3003 3126 3.056080 AGCTGGGCCTTATTTCTGGATA 58.944 45.455 4.53 0.00 0.00 2.59
3009 3132 4.202673 GGGCCTTATTTCTGGATATTGGGA 60.203 45.833 0.84 0.00 0.00 4.37
3011 3134 5.222130 GGCCTTATTTCTGGATATTGGGAGA 60.222 44.000 0.00 0.00 0.00 3.71
3015 3138 1.342074 TCTGGATATTGGGAGAGGCG 58.658 55.000 0.00 0.00 0.00 5.52
3026 3149 2.437359 AGAGGCGGTGAAGCATGC 60.437 61.111 10.51 10.51 39.27 4.06
3035 3158 4.388080 GAAGCATGCGCGCACACA 62.388 61.111 39.05 14.97 45.49 3.72
3046 3454 2.023181 GCACACACGCACACACTG 59.977 61.111 0.00 0.00 0.00 3.66
3053 3461 0.304705 CACGCACACACTGAAAGGAC 59.695 55.000 0.00 0.00 39.30 3.85
3074 3482 3.244875 ACACACCTGCCAATAGTTGATGA 60.245 43.478 0.00 0.00 0.00 2.92
3230 3638 5.708697 TCTCATCAACGGTAAGTACTCTCAA 59.291 40.000 0.00 0.00 0.00 3.02
3240 3648 3.870633 AGTACTCTCAATTCCCACGAC 57.129 47.619 0.00 0.00 0.00 4.34
3274 3682 3.511699 CTCGTGACGATTTCCAGAATCA 58.488 45.455 8.60 0.00 34.61 2.57
3276 3684 3.865164 TCGTGACGATTTCCAGAATCATG 59.135 43.478 2.39 0.00 0.00 3.07
3314 3722 6.647067 AGCTATTGACTAACCGATTTCTATGC 59.353 38.462 0.00 0.00 0.00 3.14
3356 3764 1.011904 CATTGCTTCCGATGCGACG 60.012 57.895 0.00 0.00 0.00 5.12
3359 3767 3.188786 GCTTCCGATGCGACGCTT 61.189 61.111 22.08 15.30 0.00 4.68
3476 3884 2.091885 TCTGAAAGGGAAGGTTGCACTT 60.092 45.455 0.00 0.00 0.00 3.16
3481 3889 1.780919 AGGGAAGGTTGCACTTTAGGT 59.219 47.619 0.00 0.00 0.00 3.08
3512 3920 2.550978 CGCCGATTAATCTGGTGACTT 58.449 47.619 23.78 0.00 34.92 3.01
3513 3921 2.285220 CGCCGATTAATCTGGTGACTTG 59.715 50.000 23.78 4.75 34.92 3.16
3514 3922 2.614057 GCCGATTAATCTGGTGACTTGG 59.386 50.000 20.23 10.44 0.00 3.61
3515 3923 3.873910 CCGATTAATCTGGTGACTTGGT 58.126 45.455 13.45 0.00 0.00 3.67
3516 3924 3.623060 CCGATTAATCTGGTGACTTGGTG 59.377 47.826 13.45 0.00 0.00 4.17
3517 3925 4.503910 CGATTAATCTGGTGACTTGGTGA 58.496 43.478 13.45 0.00 0.00 4.02
3518 3926 4.330074 CGATTAATCTGGTGACTTGGTGAC 59.670 45.833 13.45 0.00 0.00 3.67
3519 3927 4.974645 TTAATCTGGTGACTTGGTGACT 57.025 40.909 0.00 0.00 0.00 3.41
3524 3932 1.217882 GGTGACTTGGTGACTCGTTG 58.782 55.000 0.00 0.00 0.00 4.10
3525 3933 1.217882 GTGACTTGGTGACTCGTTGG 58.782 55.000 0.00 0.00 0.00 3.77
3536 3944 1.544691 GACTCGTTGGTCTGCCTTCTA 59.455 52.381 0.00 0.00 35.27 2.10
3546 3954 3.135530 GGTCTGCCTTCTATGGTCAGAAT 59.864 47.826 0.00 0.00 39.78 2.40
3625 4033 0.322187 AGGTTGCGCCGGTCTATTTT 60.322 50.000 4.18 0.00 43.70 1.82
3644 4052 9.358406 TCTATTTTCGACACAACCCTATCTATA 57.642 33.333 0.00 0.00 0.00 1.31
3841 4249 3.270962 TCCGTTTTGCAACCGATAAAC 57.729 42.857 16.88 8.88 0.00 2.01
3863 4271 3.436015 CCTGTTCTGAGCTGAAACATCAG 59.564 47.826 0.00 1.50 41.47 2.90
3928 4336 0.734253 CACTCCACTCTGCGCAGTAC 60.734 60.000 34.70 0.00 0.00 2.73
3950 4358 0.376852 TGTGACACTGCAAAGCGTTC 59.623 50.000 7.20 0.00 0.00 3.95
4118 4526 3.164269 CTCCCCTGGACCATCCCG 61.164 72.222 0.00 0.00 35.03 5.14
4517 4928 2.681848 GACCGACGAGATGTAGAGGAAA 59.318 50.000 0.00 0.00 0.00 3.13
4548 4959 1.406539 CATTCCCATTTCCAAGAGCGG 59.593 52.381 0.00 0.00 0.00 5.52
4580 4991 2.162608 ACGTGCACTAGAGCTAGAACTG 59.837 50.000 16.19 1.16 36.97 3.16
4585 4996 3.697045 GCACTAGAGCTAGAACTGGAGAA 59.303 47.826 11.28 0.00 36.97 2.87
4586 4997 4.202010 GCACTAGAGCTAGAACTGGAGAAG 60.202 50.000 11.28 0.00 36.97 2.85
4590 5003 3.942748 AGAGCTAGAACTGGAGAAGTACG 59.057 47.826 0.00 0.00 38.56 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.138661 CCTCCTTTGCTTTGGTTGCAA 59.861 47.619 0.00 0.00 46.90 4.08
69 70 2.359214 GTCCACGCTCATGATCACTAGA 59.641 50.000 0.00 0.00 0.00 2.43
104 105 1.027255 CCAGCTCCTCGTCTTCTCGA 61.027 60.000 0.00 0.00 38.19 4.04
193 194 1.829222 CATGCCAGCCTCCAAAAGAAT 59.171 47.619 0.00 0.00 0.00 2.40
236 240 3.454587 TTTCTCGCGGGCACACAGT 62.455 57.895 6.13 0.00 0.00 3.55
246 250 4.342772 CCAAAATGAATAGGTTTCTCGCG 58.657 43.478 0.00 0.00 0.00 5.87
309 313 7.542130 GTCAGCCTACAAAATGAATAGTTTTGG 59.458 37.037 13.76 0.78 45.92 3.28
380 387 4.645921 GCAACACAACCAGCGCCC 62.646 66.667 2.29 0.00 0.00 6.13
389 398 1.106351 AGTTCATGCCGGCAACACAA 61.106 50.000 36.33 20.05 0.00 3.33
581 619 4.664677 AACTCCAGCGCGCGACTT 62.665 61.111 37.18 15.62 0.00 3.01
605 643 5.539582 TTCATACCGCAACAGTTTACATC 57.460 39.130 0.00 0.00 0.00 3.06
606 644 5.645929 TCATTCATACCGCAACAGTTTACAT 59.354 36.000 0.00 0.00 0.00 2.29
607 645 4.998033 TCATTCATACCGCAACAGTTTACA 59.002 37.500 0.00 0.00 0.00 2.41
608 646 5.539582 TCATTCATACCGCAACAGTTTAC 57.460 39.130 0.00 0.00 0.00 2.01
609 647 6.751514 ATTCATTCATACCGCAACAGTTTA 57.248 33.333 0.00 0.00 0.00 2.01
610 648 5.643379 ATTCATTCATACCGCAACAGTTT 57.357 34.783 0.00 0.00 0.00 2.66
611 649 5.048083 ACAATTCATTCATACCGCAACAGTT 60.048 36.000 0.00 0.00 0.00 3.16
612 650 4.458989 ACAATTCATTCATACCGCAACAGT 59.541 37.500 0.00 0.00 0.00 3.55
613 651 4.985413 ACAATTCATTCATACCGCAACAG 58.015 39.130 0.00 0.00 0.00 3.16
614 652 5.159925 CAACAATTCATTCATACCGCAACA 58.840 37.500 0.00 0.00 0.00 3.33
615 653 4.031652 GCAACAATTCATTCATACCGCAAC 59.968 41.667 0.00 0.00 0.00 4.17
635 673 3.319405 TCCCGCTTAATTTTCACAAGCAA 59.681 39.130 9.83 0.00 43.86 3.91
636 674 2.887783 TCCCGCTTAATTTTCACAAGCA 59.112 40.909 9.83 0.00 43.86 3.91
639 677 6.256757 CACTTTTTCCCGCTTAATTTTCACAA 59.743 34.615 0.00 0.00 0.00 3.33
641 679 5.333035 GCACTTTTTCCCGCTTAATTTTCAC 60.333 40.000 0.00 0.00 0.00 3.18
644 682 4.698575 TGCACTTTTTCCCGCTTAATTTT 58.301 34.783 0.00 0.00 0.00 1.82
645 683 4.329462 TGCACTTTTTCCCGCTTAATTT 57.671 36.364 0.00 0.00 0.00 1.82
646 684 4.535526 ATGCACTTTTTCCCGCTTAATT 57.464 36.364 0.00 0.00 0.00 1.40
647 685 4.438200 CGTATGCACTTTTTCCCGCTTAAT 60.438 41.667 0.00 0.00 0.00 1.40
650 688 1.199097 CGTATGCACTTTTTCCCGCTT 59.801 47.619 0.00 0.00 0.00 4.68
652 690 0.519961 ACGTATGCACTTTTTCCCGC 59.480 50.000 0.00 0.00 0.00 6.13
653 691 2.580589 CAACGTATGCACTTTTTCCCG 58.419 47.619 0.00 0.00 0.00 5.14
1385 1449 1.597742 CACCATAATTCGCAGGGGAG 58.402 55.000 0.00 0.00 0.00 4.30
1412 1476 3.603080 TAGTCCCCGTCCCCACCA 61.603 66.667 0.00 0.00 0.00 4.17
1426 1490 2.597578 AATTTTGCCCGAACCCTAGT 57.402 45.000 0.00 0.00 0.00 2.57
1438 1502 8.872845 CCAGAATGTCCAACTTAATAATTTTGC 58.127 33.333 0.00 0.00 0.00 3.68
1474 1538 3.248266 CCGGCAACAAGTACTACTGTAC 58.752 50.000 0.00 0.00 46.89 2.90
1475 1539 2.892852 ACCGGCAACAAGTACTACTGTA 59.107 45.455 0.00 0.00 0.00 2.74
1476 1540 1.690352 ACCGGCAACAAGTACTACTGT 59.310 47.619 0.00 0.00 0.00 3.55
1477 1541 2.450609 ACCGGCAACAAGTACTACTG 57.549 50.000 0.00 0.00 0.00 2.74
1523 1587 8.807581 CCTGAATTTTCAAGGCGATTTTATAAC 58.192 33.333 0.00 0.00 36.64 1.89
1621 1686 7.273320 ACAAACATGATCAGAATCCATCATC 57.727 36.000 0.00 0.00 37.60 2.92
1632 1697 7.095481 CCGACCTTATCATACAAACATGATCAG 60.095 40.741 0.00 1.94 43.13 2.90
1638 1703 3.807622 CGCCGACCTTATCATACAAACAT 59.192 43.478 0.00 0.00 0.00 2.71
1644 1709 2.391879 GTCACGCCGACCTTATCATAC 58.608 52.381 0.00 0.00 38.85 2.39
1665 1730 1.615424 TACCTCCACCCCTTCAGGC 60.615 63.158 0.00 0.00 0.00 4.85
1674 1739 2.893398 CTGCGAGGTACCTCCACC 59.107 66.667 31.78 21.42 39.77 4.61
1773 1838 0.899019 TCCACATGTAGCGCCACTTA 59.101 50.000 7.64 0.00 0.00 2.24
1840 1905 3.242969 ACATCGCAGTGAAATGATCATGC 60.243 43.478 9.46 7.82 40.97 4.06
1848 1913 2.744202 GACTTCCACATCGCAGTGAAAT 59.256 45.455 8.39 0.00 42.05 2.17
1857 1922 2.967599 TCATCCAGACTTCCACATCG 57.032 50.000 0.00 0.00 0.00 3.84
1872 1937 1.529826 GCGTGAAGCGTGGAATTCATC 60.530 52.381 7.93 0.00 43.66 2.92
1893 1958 4.536364 ATGACGCACACATAATTGCTAC 57.464 40.909 0.00 0.00 36.54 3.58
1898 1963 4.815846 TCAGCATATGACGCACACATAATT 59.184 37.500 6.97 0.00 34.58 1.40
1904 1969 3.357021 CAATTCAGCATATGACGCACAC 58.643 45.455 6.97 0.00 37.77 3.82
1926 1991 3.189287 AGCTCCTACACAAAAATTGCTCG 59.811 43.478 0.00 0.00 0.00 5.03
1976 2041 3.578716 TGGTCTCTTTCCACTCAGGTAAG 59.421 47.826 0.00 0.00 43.90 2.34
1982 2047 2.619931 TCCATGGTCTCTTTCCACTCA 58.380 47.619 12.58 0.00 37.81 3.41
2065 2130 9.715121 ATTCATAAACTGCAGAAAACATCAATT 57.285 25.926 23.35 0.00 0.00 2.32
2066 2131 9.146984 CATTCATAAACTGCAGAAAACATCAAT 57.853 29.630 23.35 5.80 0.00 2.57
2106 2171 6.625081 GCCCAACCAACTTCTGAATATTGTAC 60.625 42.308 0.00 0.00 0.00 2.90
2130 2195 4.632538 ACAACCTACAAAAGAAGTGTGC 57.367 40.909 0.00 0.00 0.00 4.57
2269 2334 8.256605 TGTTTCAAGAACATTCATTTCAGGAAA 58.743 29.630 0.00 0.00 30.92 3.13
2271 2336 7.345422 TGTTTCAAGAACATTCATTTCAGGA 57.655 32.000 0.00 0.00 0.00 3.86
2272 2337 8.492748 CATTGTTTCAAGAACATTCATTTCAGG 58.507 33.333 0.00 0.00 0.00 3.86
2290 2355 2.365293 AGTTGGGACTTGGCATTGTTTC 59.635 45.455 0.00 0.00 29.87 2.78
2315 2380 6.549736 ACCCACTAAGGCATTGATATTTTACC 59.450 38.462 0.00 0.00 35.39 2.85
2323 2388 6.016555 ACTTTAAACCCACTAAGGCATTGAT 58.983 36.000 0.00 0.00 35.39 2.57
2347 2412 4.819105 ATCAAAAGACCTCATACCACGA 57.181 40.909 0.00 0.00 0.00 4.35
2348 2413 5.178797 AGAATCAAAAGACCTCATACCACG 58.821 41.667 0.00 0.00 0.00 4.94
2359 2424 5.816919 TGAACAACGGAAGAATCAAAAGAC 58.183 37.500 0.00 0.00 0.00 3.01
2370 2435 6.089820 CCAAATGATGAATTGAACAACGGAAG 59.910 38.462 0.00 0.00 0.00 3.46
2374 2439 6.151691 ACTCCAAATGATGAATTGAACAACG 58.848 36.000 0.00 0.00 0.00 4.10
2377 2442 9.166173 CTAGTACTCCAAATGATGAATTGAACA 57.834 33.333 0.00 0.00 0.00 3.18
2380 2445 9.605275 CTTCTAGTACTCCAAATGATGAATTGA 57.395 33.333 0.00 0.00 0.00 2.57
2486 2570 2.095415 GCGGTCCCTATTGAAACACAAC 60.095 50.000 0.00 0.00 41.52 3.32
2488 2572 1.072489 TGCGGTCCCTATTGAAACACA 59.928 47.619 0.00 0.00 0.00 3.72
2524 2608 1.291132 GACGCAGCAGATTACTTCCC 58.709 55.000 0.00 0.00 0.00 3.97
2537 2621 0.742281 CCCTCAGAACCATGACGCAG 60.742 60.000 0.00 0.00 0.00 5.18
2602 2686 2.769663 TGGAAATCTACTACGGCCATGT 59.230 45.455 2.24 0.00 0.00 3.21
2644 2728 6.211384 CCTTCACCTCCATCTTTTTACCATTT 59.789 38.462 0.00 0.00 0.00 2.32
2671 2755 1.423584 TGAGAAGACAGCCAACAGGA 58.576 50.000 0.00 0.00 0.00 3.86
2718 2802 5.101628 TGAAAATGTATCCAGCGAAAATGC 58.898 37.500 0.00 0.00 0.00 3.56
2726 2811 8.243426 TGTAGAACAATTGAAAATGTATCCAGC 58.757 33.333 13.59 0.00 0.00 4.85
2750 2835 4.780815 TCCTTTCATCAAACTGTGAGTGT 58.219 39.130 0.00 0.00 40.43 3.55
2757 2842 7.988737 TGCATAAGTATCCTTTCATCAAACTG 58.011 34.615 0.00 0.00 31.89 3.16
2770 2855 5.470845 GCAACCGATATGCATAAGTATCC 57.529 43.478 11.13 0.00 43.29 2.59
2786 2904 2.993471 GCATTGACCCCTGCAACCG 61.993 63.158 0.00 0.00 38.28 4.44
2787 2905 2.649129 GGCATTGACCCCTGCAACC 61.649 63.158 0.00 0.00 40.18 3.77
2788 2906 2.973082 GGCATTGACCCCTGCAAC 59.027 61.111 0.00 0.00 40.18 4.17
2789 2907 2.676121 CGGCATTGACCCCTGCAA 60.676 61.111 0.00 0.00 40.18 4.08
2790 2908 4.738998 CCGGCATTGACCCCTGCA 62.739 66.667 0.00 0.00 40.18 4.41
2791 2909 4.740822 ACCGGCATTGACCCCTGC 62.741 66.667 0.00 0.00 37.66 4.85
2792 2910 1.184970 AAAACCGGCATTGACCCCTG 61.185 55.000 0.00 0.00 0.00 4.45
2793 2911 0.406361 TAAAACCGGCATTGACCCCT 59.594 50.000 0.00 0.00 0.00 4.79
2794 2912 1.136110 CATAAAACCGGCATTGACCCC 59.864 52.381 0.00 0.00 0.00 4.95
2795 2913 2.096248 TCATAAAACCGGCATTGACCC 58.904 47.619 0.00 0.00 0.00 4.46
2796 2914 4.556699 GCTATCATAAAACCGGCATTGACC 60.557 45.833 0.00 0.00 0.00 4.02
2797 2915 4.537015 GCTATCATAAAACCGGCATTGAC 58.463 43.478 0.00 0.00 0.00 3.18
2798 2916 3.249799 CGCTATCATAAAACCGGCATTGA 59.750 43.478 0.00 0.00 0.00 2.57
2799 2917 3.003275 ACGCTATCATAAAACCGGCATTG 59.997 43.478 0.00 0.00 0.00 2.82
2800 2918 3.211045 ACGCTATCATAAAACCGGCATT 58.789 40.909 0.00 0.00 0.00 3.56
2801 2919 2.806244 GACGCTATCATAAAACCGGCAT 59.194 45.455 0.00 0.00 0.00 4.40
2802 2920 2.159014 AGACGCTATCATAAAACCGGCA 60.159 45.455 0.00 0.00 0.00 5.69
2803 2921 2.480845 AGACGCTATCATAAAACCGGC 58.519 47.619 0.00 0.00 0.00 6.13
2804 2922 6.592798 TTAAAGACGCTATCATAAAACCGG 57.407 37.500 0.00 0.00 0.00 5.28
2854 2972 8.946085 TGACAACATCAACTATATGAGGAAAAC 58.054 33.333 0.00 0.00 34.85 2.43
2911 3029 8.761575 AACGTTTAATATTTCAGGAACGACTA 57.238 30.769 18.60 0.00 41.47 2.59
2916 3034 9.113876 CACTCAAACGTTTAATATTTCAGGAAC 57.886 33.333 14.20 0.00 0.00 3.62
2990 3112 5.942826 GCCTCTCCCAATATCCAGAAATAAG 59.057 44.000 0.00 0.00 0.00 1.73
2998 3120 0.399949 ACCGCCTCTCCCAATATCCA 60.400 55.000 0.00 0.00 0.00 3.41
3001 3124 1.417890 CTTCACCGCCTCTCCCAATAT 59.582 52.381 0.00 0.00 0.00 1.28
3003 3126 1.604378 CTTCACCGCCTCTCCCAAT 59.396 57.895 0.00 0.00 0.00 3.16
3009 3132 2.437359 GCATGCTTCACCGCCTCT 60.437 61.111 11.37 0.00 0.00 3.69
3029 3152 1.976478 TTCAGTGTGTGCGTGTGTGC 61.976 55.000 0.00 0.00 0.00 4.57
3035 3158 0.107897 TGTCCTTTCAGTGTGTGCGT 60.108 50.000 0.00 0.00 0.00 5.24
3039 3162 1.559682 AGGTGTGTCCTTTCAGTGTGT 59.440 47.619 0.00 0.00 45.67 3.72
3040 3163 1.942657 CAGGTGTGTCCTTTCAGTGTG 59.057 52.381 0.00 0.00 45.67 3.82
3041 3164 1.747206 GCAGGTGTGTCCTTTCAGTGT 60.747 52.381 0.00 0.00 45.67 3.55
3042 3165 0.947244 GCAGGTGTGTCCTTTCAGTG 59.053 55.000 0.00 0.00 45.67 3.66
3043 3166 0.179018 GGCAGGTGTGTCCTTTCAGT 60.179 55.000 0.00 0.00 45.67 3.41
3046 3454 1.620822 ATTGGCAGGTGTGTCCTTTC 58.379 50.000 0.00 0.00 45.67 2.62
3053 3461 3.346315 TCATCAACTATTGGCAGGTGTG 58.654 45.455 0.00 0.00 34.68 3.82
3061 3469 6.656693 ACAGAAAGGAACTCATCAACTATTGG 59.343 38.462 0.00 0.00 38.49 3.16
3067 3475 3.565482 TGCACAGAAAGGAACTCATCAAC 59.435 43.478 0.00 0.00 38.49 3.18
3230 3638 0.615331 AGCAGACATGTCGTGGGAAT 59.385 50.000 19.85 0.00 34.09 3.01
3240 3648 2.263077 GTCACGAGGTTAGCAGACATG 58.737 52.381 0.00 0.00 0.00 3.21
3314 3722 3.242543 GCGAGAATAGCTGTTTGGACATG 60.243 47.826 0.00 0.00 34.72 3.21
3476 3884 1.301401 GCGGTCTGTGTGCACCTAA 60.301 57.895 15.69 0.00 0.00 2.69
3481 3889 2.161078 TAATCGGCGGTCTGTGTGCA 62.161 55.000 7.21 0.00 0.00 4.57
3512 3920 1.069090 GCAGACCAACGAGTCACCA 59.931 57.895 0.00 0.00 39.34 4.17
3513 3921 1.668151 GGCAGACCAACGAGTCACC 60.668 63.158 0.00 0.00 39.34 4.02
3514 3922 0.249911 AAGGCAGACCAACGAGTCAC 60.250 55.000 0.00 0.00 39.34 3.67
3515 3923 0.033504 GAAGGCAGACCAACGAGTCA 59.966 55.000 0.00 0.00 39.34 3.41
3516 3924 0.318762 AGAAGGCAGACCAACGAGTC 59.681 55.000 0.00 0.00 39.06 3.36
3517 3925 1.629043 TAGAAGGCAGACCAACGAGT 58.371 50.000 0.00 0.00 39.06 4.18
3518 3926 2.544685 CATAGAAGGCAGACCAACGAG 58.455 52.381 0.00 0.00 39.06 4.18
3519 3927 1.207089 CCATAGAAGGCAGACCAACGA 59.793 52.381 0.00 0.00 39.06 3.85
3524 3932 2.111384 TCTGACCATAGAAGGCAGACC 58.889 52.381 0.00 0.00 37.10 3.85
3525 3933 3.895232 TTCTGACCATAGAAGGCAGAC 57.105 47.619 0.00 0.00 39.68 3.51
3536 3944 1.064505 CGCAATTCGCATTCTGACCAT 59.935 47.619 1.75 0.00 42.60 3.55
3546 3954 2.286950 GCTTGGATTATCGCAATTCGCA 60.287 45.455 1.75 0.00 42.60 5.10
3625 4033 5.637127 TGGATATAGATAGGGTTGTGTCGA 58.363 41.667 0.00 0.00 0.00 4.20
3644 4052 8.385491 TCAAATGGACATATACTTAGCATGGAT 58.615 33.333 0.00 0.00 0.00 3.41
3751 4159 3.060895 CACTTCGGTTCGAGAATAACAGC 59.939 47.826 0.00 0.00 37.14 4.40
3841 4249 3.405831 TGATGTTTCAGCTCAGAACAGG 58.594 45.455 10.65 0.00 0.00 4.00
3863 4271 1.719780 GTGTTACTAGTGCTGTGCGTC 59.280 52.381 5.39 0.00 0.00 5.19
3928 4336 1.369689 GCTTTGCAGTGTCACAGCG 60.370 57.895 14.74 3.11 32.90 5.18
3950 4358 3.365364 GCCGGTTTGTGATGAGAAGAAAG 60.365 47.826 1.90 0.00 0.00 2.62
4479 4890 2.202797 CATGGAGGACGACGGCAG 60.203 66.667 1.63 0.00 0.00 4.85
4480 4891 2.678580 TCATGGAGGACGACGGCA 60.679 61.111 1.63 0.00 0.00 5.69
4490 4901 0.741326 ACATCTCGTCGGTCATGGAG 59.259 55.000 0.00 0.00 0.00 3.86
4517 4928 3.672503 GGGAATGGGGTGCAGGGT 61.673 66.667 0.00 0.00 0.00 4.34
4548 4959 3.987868 TCTAGTGCACGTTTGAACTGATC 59.012 43.478 12.01 0.00 42.27 2.92
4580 4991 0.816373 GTCTGTCCCCGTACTTCTCC 59.184 60.000 0.00 0.00 0.00 3.71
4585 4996 1.192428 GGAATGTCTGTCCCCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
4586 4997 1.136500 GAGGAATGTCTGTCCCCGTAC 59.864 57.143 0.00 0.00 35.59 3.67
4590 5003 1.522569 CGGAGGAATGTCTGTCCCC 59.477 63.158 0.00 0.00 35.59 4.81
4649 5062 2.747686 GAGGAGGGCGACACCAAA 59.252 61.111 6.51 0.00 42.05 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.