Multiple sequence alignment - TraesCS6D01G260300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G260300 chr6D 100.000 3627 0 0 1 3627 367874774 367878400 0.000000e+00 6698.0
1 TraesCS6D01G260300 chr6D 91.304 1219 95 9 1121 2330 367864867 367866083 0.000000e+00 1653.0
2 TraesCS6D01G260300 chr6D 89.975 1177 107 3 1164 2330 368372233 368371058 0.000000e+00 1509.0
3 TraesCS6D01G260300 chr6D 89.687 1183 110 2 1160 2330 368741028 368739846 0.000000e+00 1498.0
4 TraesCS6D01G260300 chr6D 85.495 717 80 13 1 705 104144675 104145379 0.000000e+00 726.0
5 TraesCS6D01G260300 chr6D 77.349 415 72 16 2655 3064 461386111 461385714 3.640000e-55 226.0
6 TraesCS6D01G260300 chr6D 86.829 205 20 3 2327 2524 367866305 367866509 4.710000e-54 222.0
7 TraesCS6D01G260300 chr6D 78.512 242 43 6 2826 3063 49224304 49224540 2.260000e-32 150.0
8 TraesCS6D01G260300 chr6B 90.716 2402 148 38 975 3321 554123961 554121580 0.000000e+00 3131.0
9 TraesCS6D01G260300 chr6B 92.500 1200 79 8 1140 2330 554165606 554164409 0.000000e+00 1707.0
10 TraesCS6D01G260300 chr6B 89.410 746 70 1 1160 1896 554658737 554657992 0.000000e+00 931.0
11 TraesCS6D01G260300 chr6B 85.852 622 75 6 32 648 691997575 691998188 0.000000e+00 649.0
12 TraesCS6D01G260300 chr6B 83.041 684 98 13 3 681 567881249 567880579 4.010000e-169 604.0
13 TraesCS6D01G260300 chr6B 86.799 303 16 1 705 983 554125819 554125517 2.100000e-82 316.0
14 TraesCS6D01G260300 chr6B 86.829 205 20 4 2327 2524 554164187 554163983 4.710000e-54 222.0
15 TraesCS6D01G260300 chr6A 93.760 1811 82 14 713 2496 508333199 508335005 0.000000e+00 2689.0
16 TraesCS6D01G260300 chr6A 92.213 1220 84 8 1120 2330 508293950 508295167 0.000000e+00 1716.0
17 TraesCS6D01G260300 chr6A 89.492 1180 115 1 1160 2330 509562294 509561115 0.000000e+00 1483.0
18 TraesCS6D01G260300 chr6A 87.618 1268 115 14 1100 2330 509285860 509284598 0.000000e+00 1434.0
19 TraesCS6D01G260300 chr6A 93.354 632 42 0 2690 3321 508335004 508335635 0.000000e+00 935.0
20 TraesCS6D01G260300 chr6A 85.106 705 93 7 6 708 457451617 457452311 0.000000e+00 710.0
21 TraesCS6D01G260300 chr6A 93.204 309 21 0 3319 3627 183312618 183312926 4.270000e-124 455.0
22 TraesCS6D01G260300 chr6A 92.208 308 24 0 3320 3627 183931380 183931073 1.550000e-118 436.0
23 TraesCS6D01G260300 chr6A 89.562 297 27 3 3320 3612 22263251 22262955 1.230000e-99 374.0
24 TraesCS6D01G260300 chr6A 86.979 192 18 3 2340 2524 508295401 508295592 3.670000e-50 209.0
25 TraesCS6D01G260300 chr1D 87.395 714 75 7 1 708 24064240 24063536 0.000000e+00 806.0
26 TraesCS6D01G260300 chr1D 85.586 444 55 1 1118 1552 93821374 93821817 1.190000e-124 457.0
27 TraesCS6D01G260300 chr3D 86.563 707 83 6 1 705 323487392 323488088 0.000000e+00 769.0
28 TraesCS6D01G260300 chr3D 77.616 411 74 11 2655 3064 275908489 275908882 2.180000e-57 233.0
29 TraesCS6D01G260300 chr4B 86.386 617 70 7 1 613 119818802 119819408 0.000000e+00 662.0
30 TraesCS6D01G260300 chr5D 83.357 709 105 5 1 705 333554425 333555124 0.000000e+00 643.0
31 TraesCS6D01G260300 chr5D 96.753 308 10 0 3320 3627 564672064 564671757 6.940000e-142 514.0
32 TraesCS6D01G260300 chr5D 75.669 411 75 18 2656 3063 515797091 515796703 8.000000e-42 182.0
33 TraesCS6D01G260300 chr5A 84.650 658 88 6 1 655 682612698 682612051 0.000000e+00 643.0
34 TraesCS6D01G260300 chr5A 87.879 297 32 4 3320 3612 31280403 31280107 2.680000e-91 346.0
35 TraesCS6D01G260300 chr5A 78.713 404 58 16 2655 3057 120744462 120744838 1.010000e-60 244.0
36 TraesCS6D01G260300 chr1A 84.234 444 60 7 1118 1552 327383406 327382964 1.200000e-114 424.0
37 TraesCS6D01G260300 chr1A 83.108 444 63 4 1118 1552 335906052 335906492 9.440000e-106 394.0
38 TraesCS6D01G260300 chr1A 82.658 444 64 5 1118 1552 335872255 335872694 7.350000e-102 381.0
39 TraesCS6D01G260300 chr7A 90.645 310 27 2 3319 3627 721641752 721642060 9.370000e-111 411.0
40 TraesCS6D01G260300 chr7A 89.333 300 25 5 3320 3612 717767406 717767705 1.590000e-98 370.0
41 TraesCS6D01G260300 chr1B 89.933 298 24 5 3320 3612 145444635 145444931 2.640000e-101 379.0
42 TraesCS6D01G260300 chr3A 89.298 299 27 4 3320 3613 621497847 621497549 1.590000e-98 370.0
43 TraesCS6D01G260300 chr3A 76.994 326 63 10 2710 3034 124217972 124217658 3.720000e-40 176.0
44 TraesCS6D01G260300 chr2D 78.740 381 60 11 2688 3065 45690801 45690439 6.050000e-58 235.0
45 TraesCS6D01G260300 chr2D 77.451 408 61 19 2655 3057 72341877 72341496 7.890000e-52 215.0
46 TraesCS6D01G260300 chr2D 78.369 282 31 21 2651 2931 562360114 562359862 4.850000e-34 156.0
47 TraesCS6D01G260300 chr7D 77.327 419 74 13 2655 3069 102584497 102584898 1.010000e-55 228.0
48 TraesCS6D01G260300 chr4D 77.150 407 72 11 2660 3065 129755741 129756127 2.190000e-52 217.0
49 TraesCS6D01G260300 chr2A 75.895 419 77 19 2652 3065 502630647 502630248 3.700000e-45 193.0
50 TraesCS6D01G260300 chr7B 78.275 313 50 11 2652 2962 323836176 323835880 6.180000e-43 185.0
51 TraesCS6D01G260300 chr2B 79.149 235 42 5 2833 3065 489364107 489364336 4.850000e-34 156.0
52 TraesCS6D01G260300 chrUn 81.061 132 16 6 2641 2772 30087770 30087892 2.980000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G260300 chr6D 367874774 367878400 3626 False 6698.0 6698 100.0000 1 3627 1 chr6D.!!$F3 3626
1 TraesCS6D01G260300 chr6D 368371058 368372233 1175 True 1509.0 1509 89.9750 1164 2330 1 chr6D.!!$R1 1166
2 TraesCS6D01G260300 chr6D 368739846 368741028 1182 True 1498.0 1498 89.6870 1160 2330 1 chr6D.!!$R2 1170
3 TraesCS6D01G260300 chr6D 367864867 367866509 1642 False 937.5 1653 89.0665 1121 2524 2 chr6D.!!$F4 1403
4 TraesCS6D01G260300 chr6D 104144675 104145379 704 False 726.0 726 85.4950 1 705 1 chr6D.!!$F2 704
5 TraesCS6D01G260300 chr6B 554121580 554125819 4239 True 1723.5 3131 88.7575 705 3321 2 chr6B.!!$R3 2616
6 TraesCS6D01G260300 chr6B 554163983 554165606 1623 True 964.5 1707 89.6645 1140 2524 2 chr6B.!!$R4 1384
7 TraesCS6D01G260300 chr6B 554657992 554658737 745 True 931.0 931 89.4100 1160 1896 1 chr6B.!!$R1 736
8 TraesCS6D01G260300 chr6B 691997575 691998188 613 False 649.0 649 85.8520 32 648 1 chr6B.!!$F1 616
9 TraesCS6D01G260300 chr6B 567880579 567881249 670 True 604.0 604 83.0410 3 681 1 chr6B.!!$R2 678
10 TraesCS6D01G260300 chr6A 508333199 508335635 2436 False 1812.0 2689 93.5570 713 3321 2 chr6A.!!$F4 2608
11 TraesCS6D01G260300 chr6A 509561115 509562294 1179 True 1483.0 1483 89.4920 1160 2330 1 chr6A.!!$R4 1170
12 TraesCS6D01G260300 chr6A 509284598 509285860 1262 True 1434.0 1434 87.6180 1100 2330 1 chr6A.!!$R3 1230
13 TraesCS6D01G260300 chr6A 508293950 508295592 1642 False 962.5 1716 89.5960 1120 2524 2 chr6A.!!$F3 1404
14 TraesCS6D01G260300 chr6A 457451617 457452311 694 False 710.0 710 85.1060 6 708 1 chr6A.!!$F2 702
15 TraesCS6D01G260300 chr1D 24063536 24064240 704 True 806.0 806 87.3950 1 708 1 chr1D.!!$R1 707
16 TraesCS6D01G260300 chr3D 323487392 323488088 696 False 769.0 769 86.5630 1 705 1 chr3D.!!$F2 704
17 TraesCS6D01G260300 chr4B 119818802 119819408 606 False 662.0 662 86.3860 1 613 1 chr4B.!!$F1 612
18 TraesCS6D01G260300 chr5D 333554425 333555124 699 False 643.0 643 83.3570 1 705 1 chr5D.!!$F1 704
19 TraesCS6D01G260300 chr5A 682612051 682612698 647 True 643.0 643 84.6500 1 655 1 chr5A.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1020 0.039618 ATCTTTTCCGCCACCACCAT 59.960 50.0 0.00 0.0 0.0 3.55 F
2223 3902 0.745845 TCCTCGGCGAGTACTACCAC 60.746 60.0 32.41 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2582 4500 0.534203 GCAGGACAACCTTGGTCGAA 60.534 55.0 0.0 0.0 45.36 3.71 R
3434 5363 0.037046 GACGGGTGTTTATCGTGGGT 60.037 55.0 0.0 0.0 37.25 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.524394 ATGGATCCGGCGCTAGGT 60.524 61.111 18.94 2.60 0.00 3.08
75 76 3.691342 CCGTCTGGCCTCCGAACA 61.691 66.667 3.32 0.00 0.00 3.18
153 154 3.965258 ACAAGGCCATGGCACGGA 61.965 61.111 36.56 0.00 44.11 4.69
374 384 1.760875 GTAGGGCATGGGAGACGGA 60.761 63.158 0.00 0.00 0.00 4.69
447 461 1.071814 GGCAACCGGACCAACACTA 59.928 57.895 9.46 0.00 0.00 2.74
543 557 4.390909 CCGCTTAGATTAGGTTTCACGTTT 59.609 41.667 0.00 0.00 0.00 3.60
544 558 5.445540 CCGCTTAGATTAGGTTTCACGTTTC 60.446 44.000 0.00 0.00 0.00 2.78
545 559 5.119588 CGCTTAGATTAGGTTTCACGTTTCA 59.880 40.000 0.00 0.00 0.00 2.69
546 560 6.304882 GCTTAGATTAGGTTTCACGTTTCAC 58.695 40.000 0.00 0.00 0.00 3.18
605 620 8.924511 ATTTGAGGTATCCGAATATGAAATGT 57.075 30.769 0.00 0.00 0.00 2.71
638 653 2.028484 GCCGGTCATTATCCGCGA 59.972 61.111 8.23 0.00 45.71 5.87
682 698 1.743772 CGGTTGAGGATCGGATTTGCT 60.744 52.381 0.00 0.00 38.61 3.91
684 700 3.134458 GGTTGAGGATCGGATTTGCTAG 58.866 50.000 0.00 0.00 38.61 3.42
688 704 1.341531 AGGATCGGATTTGCTAGGTCG 59.658 52.381 0.00 0.00 0.00 4.79
689 705 1.605712 GGATCGGATTTGCTAGGTCGG 60.606 57.143 0.00 0.00 0.00 4.79
693 709 1.526225 GATTTGCTAGGTCGGGGCC 60.526 63.158 0.00 0.00 0.00 5.80
708 724 0.318784 GGGCCGTAGATGCTCTTACG 60.319 60.000 0.00 7.27 35.90 3.18
711 727 2.604132 GGCCGTAGATGCTCTTACGTAC 60.604 54.545 0.00 0.00 34.50 3.67
717 733 6.357980 CGTAGATGCTCTTACGTACGAATTA 58.642 40.000 24.41 0.31 28.09 1.40
729 745 4.561606 ACGTACGAATTAAGCTTAGCAGTG 59.438 41.667 24.41 0.37 0.00 3.66
895 935 1.609061 GCTACCGTGGGATGATGATGG 60.609 57.143 0.00 0.00 0.00 3.51
980 1020 0.039618 ATCTTTTCCGCCACCACCAT 59.960 50.000 0.00 0.00 0.00 3.55
1039 2643 2.024319 GCGCTCGCAGAACTGAAGT 61.024 57.895 9.59 0.00 41.49 3.01
1048 2652 6.505044 TCGCAGAACTGAAGTAGTACATTA 57.495 37.500 5.97 0.00 39.18 1.90
1080 2710 9.130312 GTATATCCAACTTGCTAAGTAGAATCG 57.870 37.037 2.60 0.00 41.91 3.34
1095 2725 6.150318 AGTAGAATCGTGCCGTTAGAATATG 58.850 40.000 0.00 0.00 0.00 1.78
1096 2726 4.307432 AGAATCGTGCCGTTAGAATATGG 58.693 43.478 0.00 0.00 0.00 2.74
1107 2737 6.323266 CCGTTAGAATATGGAGTATCTTCGG 58.677 44.000 0.00 0.00 33.73 4.30
1151 2792 1.080025 GTACTGTCTGACCACCGGC 60.080 63.158 0.00 0.00 0.00 6.13
1153 2794 3.680786 CTGTCTGACCACCGGCGA 61.681 66.667 9.30 0.00 0.00 5.54
1378 3054 3.092192 GACCTCGTCATCGTCGCGA 62.092 63.158 3.71 3.71 41.13 5.87
1977 3653 2.176273 GCCGCTGCTGATCGTGAAT 61.176 57.895 0.00 0.00 33.53 2.57
2061 3737 4.008933 GAGTGGGACTGGCTGCGT 62.009 66.667 0.00 0.00 0.00 5.24
2223 3902 0.745845 TCCTCGGCGAGTACTACCAC 60.746 60.000 32.41 0.00 0.00 4.16
2230 3909 1.528603 GCGAGTACTACCACTTCGACG 60.529 57.143 0.00 0.00 0.00 5.12
2244 3923 4.660938 GACGCCACCCCCTTTGCT 62.661 66.667 0.00 0.00 0.00 3.91
2400 4306 1.137404 GTCATTGACATGGCCGTGC 59.863 57.895 25.30 17.33 32.09 5.34
2434 4340 1.068333 GTCTGTCATTGCATTGGCGTT 60.068 47.619 8.53 0.00 45.35 4.84
2444 4350 1.476110 GCATTGGCGTTATCTACCCCA 60.476 52.381 0.00 0.00 32.83 4.96
2532 4450 5.820947 ACGTTTTTGAGTACTCTGGAATGTT 59.179 36.000 23.01 8.47 0.00 2.71
2536 4454 9.665264 GTTTTTGAGTACTCTGGAATGTTAAAG 57.335 33.333 23.01 0.00 0.00 1.85
2549 4467 8.990163 TGGAATGTTAAAGAAAAAGGAGTACT 57.010 30.769 0.00 0.00 0.00 2.73
2550 4468 9.416284 TGGAATGTTAAAGAAAAAGGAGTACTT 57.584 29.630 0.00 0.00 42.52 2.24
2568 4486 2.819608 ACTTTGGGAATGGATGAACACG 59.180 45.455 0.00 0.00 0.00 4.49
2581 4499 2.293170 TGAACACGAAATGGTTGCTCA 58.707 42.857 0.00 0.00 0.00 4.26
2582 4500 2.884012 TGAACACGAAATGGTTGCTCAT 59.116 40.909 0.00 0.00 0.00 2.90
2586 4504 2.159430 CACGAAATGGTTGCTCATTCGA 59.841 45.455 12.46 0.00 36.45 3.71
2601 4519 0.534203 TTCGACCAAGGTTGTCCTGC 60.534 55.000 6.39 0.00 44.35 4.85
2609 4527 1.668826 AGGTTGTCCTGCCTCCATTA 58.331 50.000 0.00 0.00 43.33 1.90
2610 4528 1.992557 AGGTTGTCCTGCCTCCATTAA 59.007 47.619 0.00 0.00 43.33 1.40
2638 4567 4.439253 AATTGTCCAGCCTAGTATTCCC 57.561 45.455 0.00 0.00 0.00 3.97
2684 4613 6.870971 AAAGTTTATCGGAAGTACAAAGCA 57.129 33.333 0.00 0.00 0.00 3.91
2688 4617 7.527457 AGTTTATCGGAAGTACAAAGCATTTC 58.473 34.615 0.00 0.00 35.03 2.17
2747 4676 0.388134 CCACCGAACGACCACTACTG 60.388 60.000 0.00 0.00 0.00 2.74
2780 4709 3.106407 GCTGACGTGTCGCTGTCC 61.106 66.667 0.00 0.00 34.18 4.02
2810 4739 1.534729 ACCGAAGCCAATTTGACCTC 58.465 50.000 0.00 0.00 0.00 3.85
2812 4741 1.156736 CGAAGCCAATTTGACCTCGT 58.843 50.000 0.00 0.00 0.00 4.18
2892 4821 3.891586 GAAGCCGCAGTCGTCGTCA 62.892 63.158 0.00 0.00 0.00 4.35
2998 4927 2.107141 GCATCTACGCCGGAGCTT 59.893 61.111 5.05 0.00 36.60 3.74
3034 4963 2.943978 CGGCCGAACTCAAGGAGGT 61.944 63.158 24.07 0.00 33.35 3.85
3035 4964 1.375326 GGCCGAACTCAAGGAGGTT 59.625 57.895 0.00 0.00 33.35 3.50
3045 4974 1.203013 TCAAGGAGGTTCAGAGTCCGA 60.203 52.381 0.00 0.00 35.33 4.55
3075 5004 7.432252 ACAAACTCGAAAAAGATTGTGTTGATC 59.568 33.333 0.00 0.00 39.78 2.92
3098 5027 4.275689 CGATATTTATGCCCTGTTTCAGCA 59.724 41.667 0.00 0.00 41.50 4.41
3266 5195 1.338973 TCCTACAGTTTCGCGTCTGTT 59.661 47.619 27.28 17.06 43.39 3.16
3321 5250 5.594317 CCAATAATCCTGGAAACTCCGATTT 59.406 40.000 0.00 0.00 40.17 2.17
3322 5251 6.096846 CCAATAATCCTGGAAACTCCGATTTT 59.903 38.462 0.00 0.00 40.17 1.82
3323 5252 7.363793 CCAATAATCCTGGAAACTCCGATTTTT 60.364 37.037 0.00 0.00 40.17 1.94
3340 5269 0.667453 TTTTTGAACCGGGCGTAACC 59.333 50.000 6.32 0.00 37.93 2.85
3350 5279 3.276281 GGCGTAACCCCTTTCCATT 57.724 52.632 0.00 0.00 0.00 3.16
3351 5280 2.423446 GGCGTAACCCCTTTCCATTA 57.577 50.000 0.00 0.00 0.00 1.90
3352 5281 2.019249 GGCGTAACCCCTTTCCATTAC 58.981 52.381 0.00 0.00 0.00 1.89
3353 5282 2.356432 GGCGTAACCCCTTTCCATTACT 60.356 50.000 0.00 0.00 0.00 2.24
3354 5283 3.349927 GCGTAACCCCTTTCCATTACTT 58.650 45.455 0.00 0.00 0.00 2.24
3355 5284 3.760151 GCGTAACCCCTTTCCATTACTTT 59.240 43.478 0.00 0.00 0.00 2.66
3356 5285 4.142534 GCGTAACCCCTTTCCATTACTTTC 60.143 45.833 0.00 0.00 0.00 2.62
3357 5286 5.005094 CGTAACCCCTTTCCATTACTTTCA 58.995 41.667 0.00 0.00 0.00 2.69
3358 5287 5.650703 CGTAACCCCTTTCCATTACTTTCAT 59.349 40.000 0.00 0.00 0.00 2.57
3359 5288 6.824704 CGTAACCCCTTTCCATTACTTTCATA 59.175 38.462 0.00 0.00 0.00 2.15
3360 5289 7.337436 CGTAACCCCTTTCCATTACTTTCATAA 59.663 37.037 0.00 0.00 0.00 1.90
3361 5290 7.476540 AACCCCTTTCCATTACTTTCATAAC 57.523 36.000 0.00 0.00 0.00 1.89
3362 5291 5.650703 ACCCCTTTCCATTACTTTCATAACG 59.349 40.000 0.00 0.00 0.00 3.18
3363 5292 5.883673 CCCCTTTCCATTACTTTCATAACGA 59.116 40.000 0.00 0.00 0.00 3.85
3364 5293 6.376018 CCCCTTTCCATTACTTTCATAACGAA 59.624 38.462 0.00 0.00 0.00 3.85
3365 5294 7.094118 CCCCTTTCCATTACTTTCATAACGAAA 60.094 37.037 0.00 0.00 41.40 3.46
3366 5295 8.301002 CCCTTTCCATTACTTTCATAACGAAAA 58.699 33.333 0.00 0.00 43.01 2.29
3367 5296 9.855021 CCTTTCCATTACTTTCATAACGAAAAT 57.145 29.630 0.00 0.00 43.01 1.82
3377 5306 9.659830 ACTTTCATAACGAAAATACAACAGTTC 57.340 29.630 0.00 0.00 43.01 3.01
3378 5307 9.658475 CTTTCATAACGAAAATACAACAGTTCA 57.342 29.630 0.00 0.00 43.01 3.18
3380 5309 8.996988 TCATAACGAAAATACAACAGTTCAAC 57.003 30.769 0.00 0.00 0.00 3.18
3381 5310 7.794810 TCATAACGAAAATACAACAGTTCAACG 59.205 33.333 0.00 0.00 0.00 4.10
3382 5311 5.721876 ACGAAAATACAACAGTTCAACGA 57.278 34.783 0.00 0.00 0.00 3.85
3383 5312 5.495502 ACGAAAATACAACAGTTCAACGAC 58.504 37.500 0.00 0.00 0.00 4.34
3384 5313 4.901881 CGAAAATACAACAGTTCAACGACC 59.098 41.667 0.00 0.00 0.00 4.79
3385 5314 5.502706 CGAAAATACAACAGTTCAACGACCA 60.503 40.000 0.00 0.00 0.00 4.02
3386 5315 4.806342 AATACAACAGTTCAACGACCAC 57.194 40.909 0.00 0.00 0.00 4.16
3387 5316 1.375551 ACAACAGTTCAACGACCACC 58.624 50.000 0.00 0.00 0.00 4.61
3388 5317 0.661020 CAACAGTTCAACGACCACCC 59.339 55.000 0.00 0.00 0.00 4.61
3389 5318 0.253610 AACAGTTCAACGACCACCCA 59.746 50.000 0.00 0.00 0.00 4.51
3390 5319 0.179056 ACAGTTCAACGACCACCCAG 60.179 55.000 0.00 0.00 0.00 4.45
3391 5320 0.884704 CAGTTCAACGACCACCCAGG 60.885 60.000 0.00 0.00 45.67 4.45
3392 5321 1.052124 AGTTCAACGACCACCCAGGA 61.052 55.000 0.00 0.00 41.22 3.86
3393 5322 0.179040 GTTCAACGACCACCCAGGAA 60.179 55.000 0.00 0.00 41.22 3.36
3394 5323 0.547075 TTCAACGACCACCCAGGAAA 59.453 50.000 0.00 0.00 41.22 3.13
3395 5324 0.179040 TCAACGACCACCCAGGAAAC 60.179 55.000 0.00 0.00 41.22 2.78
3396 5325 1.149854 AACGACCACCCAGGAAACC 59.850 57.895 0.00 0.00 41.22 3.27
3397 5326 1.637724 AACGACCACCCAGGAAACCA 61.638 55.000 0.00 0.00 41.22 3.67
3398 5327 1.149627 CGACCACCCAGGAAACCAA 59.850 57.895 0.00 0.00 41.22 3.67
3399 5328 0.466555 CGACCACCCAGGAAACCAAA 60.467 55.000 0.00 0.00 41.22 3.28
3400 5329 1.328279 GACCACCCAGGAAACCAAAG 58.672 55.000 0.00 0.00 41.22 2.77
3401 5330 0.930726 ACCACCCAGGAAACCAAAGA 59.069 50.000 0.00 0.00 41.22 2.52
3402 5331 1.289530 ACCACCCAGGAAACCAAAGAA 59.710 47.619 0.00 0.00 41.22 2.52
3403 5332 2.292587 ACCACCCAGGAAACCAAAGAAA 60.293 45.455 0.00 0.00 41.22 2.52
3404 5333 2.365293 CCACCCAGGAAACCAAAGAAAG 59.635 50.000 0.00 0.00 41.22 2.62
3405 5334 2.365293 CACCCAGGAAACCAAAGAAAGG 59.635 50.000 0.00 0.00 0.00 3.11
3406 5335 1.970640 CCCAGGAAACCAAAGAAAGGG 59.029 52.381 0.00 0.00 0.00 3.95
3407 5336 1.970640 CCAGGAAACCAAAGAAAGGGG 59.029 52.381 0.00 0.00 0.00 4.79
3408 5337 2.425683 CCAGGAAACCAAAGAAAGGGGA 60.426 50.000 0.00 0.00 0.00 4.81
3409 5338 3.304829 CAGGAAACCAAAGAAAGGGGAA 58.695 45.455 0.00 0.00 0.00 3.97
3410 5339 3.069586 CAGGAAACCAAAGAAAGGGGAAC 59.930 47.826 0.00 0.00 0.00 3.62
3411 5340 2.035449 GGAAACCAAAGAAAGGGGAACG 59.965 50.000 0.00 0.00 0.00 3.95
3412 5341 1.037493 AACCAAAGAAAGGGGAACGC 58.963 50.000 0.00 0.00 43.76 4.84
3427 5356 3.735181 ACGCGAGTTCAAGTATCCC 57.265 52.632 15.93 0.00 46.40 3.85
3428 5357 1.183549 ACGCGAGTTCAAGTATCCCT 58.816 50.000 15.93 0.00 46.40 4.20
3429 5358 1.135083 ACGCGAGTTCAAGTATCCCTG 60.135 52.381 15.93 0.00 46.40 4.45
3430 5359 1.802880 CGCGAGTTCAAGTATCCCTGG 60.803 57.143 0.00 0.00 0.00 4.45
3431 5360 1.480954 GCGAGTTCAAGTATCCCTGGA 59.519 52.381 0.00 0.00 0.00 3.86
3432 5361 2.093658 GCGAGTTCAAGTATCCCTGGAA 60.094 50.000 0.00 0.00 30.22 3.53
3433 5362 3.618997 GCGAGTTCAAGTATCCCTGGAAA 60.619 47.826 0.00 0.00 34.82 3.13
3434 5363 4.575885 CGAGTTCAAGTATCCCTGGAAAA 58.424 43.478 0.00 0.00 34.82 2.29
3435 5364 4.392138 CGAGTTCAAGTATCCCTGGAAAAC 59.608 45.833 0.00 0.00 34.82 2.43
3436 5365 4.663334 AGTTCAAGTATCCCTGGAAAACC 58.337 43.478 0.00 0.00 34.82 3.27
3437 5366 3.732048 TCAAGTATCCCTGGAAAACCC 57.268 47.619 0.00 0.00 0.00 4.11
3438 5367 2.990284 TCAAGTATCCCTGGAAAACCCA 59.010 45.455 0.00 0.00 44.25 4.51
3439 5368 3.089284 CAAGTATCCCTGGAAAACCCAC 58.911 50.000 0.00 0.00 40.82 4.61
3440 5369 1.280998 AGTATCCCTGGAAAACCCACG 59.719 52.381 0.00 0.00 40.82 4.94
3441 5370 1.279846 GTATCCCTGGAAAACCCACGA 59.720 52.381 0.00 0.00 40.82 4.35
3442 5371 0.999712 ATCCCTGGAAAACCCACGAT 59.000 50.000 0.00 0.00 40.82 3.73
3443 5372 1.659022 TCCCTGGAAAACCCACGATA 58.341 50.000 0.00 0.00 40.82 2.92
3444 5373 1.986631 TCCCTGGAAAACCCACGATAA 59.013 47.619 0.00 0.00 40.82 1.75
3445 5374 2.375845 TCCCTGGAAAACCCACGATAAA 59.624 45.455 0.00 0.00 40.82 1.40
3446 5375 2.490509 CCCTGGAAAACCCACGATAAAC 59.509 50.000 0.00 0.00 40.82 2.01
3447 5376 3.150767 CCTGGAAAACCCACGATAAACA 58.849 45.455 0.00 0.00 40.82 2.83
3448 5377 3.057806 CCTGGAAAACCCACGATAAACAC 60.058 47.826 0.00 0.00 40.82 3.32
3449 5378 2.885894 TGGAAAACCCACGATAAACACC 59.114 45.455 0.00 0.00 40.82 4.16
3450 5379 2.229543 GGAAAACCCACGATAAACACCC 59.770 50.000 0.00 0.00 34.14 4.61
3451 5380 1.525941 AAACCCACGATAAACACCCG 58.474 50.000 0.00 0.00 0.00 5.28
3452 5381 0.397564 AACCCACGATAAACACCCGT 59.602 50.000 0.00 0.00 36.95 5.28
3453 5382 0.037046 ACCCACGATAAACACCCGTC 60.037 55.000 0.00 0.00 33.96 4.79
3454 5383 0.037139 CCCACGATAAACACCCGTCA 60.037 55.000 0.00 0.00 33.96 4.35
3455 5384 1.406341 CCCACGATAAACACCCGTCAT 60.406 52.381 0.00 0.00 33.96 3.06
3456 5385 1.931172 CCACGATAAACACCCGTCATC 59.069 52.381 0.00 0.00 33.96 2.92
3457 5386 1.586578 CACGATAAACACCCGTCATCG 59.413 52.381 0.00 0.00 43.06 3.84
3467 5396 4.521075 CGTCATCGGGCAGTTCAT 57.479 55.556 0.00 0.00 0.00 2.57
3468 5397 2.301505 CGTCATCGGGCAGTTCATC 58.698 57.895 0.00 0.00 0.00 2.92
3469 5398 1.482621 CGTCATCGGGCAGTTCATCG 61.483 60.000 0.00 0.00 0.00 3.84
3470 5399 1.521457 TCATCGGGCAGTTCATCGC 60.521 57.895 0.00 0.00 0.00 4.58
3471 5400 2.586079 ATCGGGCAGTTCATCGCG 60.586 61.111 0.00 0.00 39.52 5.87
3472 5401 4.812476 TCGGGCAGTTCATCGCGG 62.812 66.667 6.13 0.00 38.83 6.46
3476 5405 4.467084 GCAGTTCATCGCGGGGGA 62.467 66.667 6.13 0.00 0.00 4.81
3477 5406 2.267642 CAGTTCATCGCGGGGGAA 59.732 61.111 6.13 5.01 0.00 3.97
3478 5407 1.376683 CAGTTCATCGCGGGGGAAA 60.377 57.895 6.13 0.00 0.00 3.13
3479 5408 0.958382 CAGTTCATCGCGGGGGAAAA 60.958 55.000 6.13 0.00 0.00 2.29
3480 5409 0.958876 AGTTCATCGCGGGGGAAAAC 60.959 55.000 6.13 3.04 0.00 2.43
3481 5410 1.676303 TTCATCGCGGGGGAAAACC 60.676 57.895 6.13 0.00 39.11 3.27
3491 5420 2.728397 GGGAAAACCCAGTGACACC 58.272 57.895 0.84 0.00 36.34 4.16
3492 5421 0.106419 GGGAAAACCCAGTGACACCA 60.106 55.000 0.84 0.00 36.34 4.17
3493 5422 1.686741 GGGAAAACCCAGTGACACCAA 60.687 52.381 0.84 0.00 36.34 3.67
3494 5423 1.407618 GGAAAACCCAGTGACACCAAC 59.592 52.381 0.84 0.00 34.14 3.77
3495 5424 2.096248 GAAAACCCAGTGACACCAACA 58.904 47.619 0.84 0.00 0.00 3.33
3496 5425 2.452600 AAACCCAGTGACACCAACAT 57.547 45.000 0.84 0.00 0.00 2.71
3497 5426 3.586470 AAACCCAGTGACACCAACATA 57.414 42.857 0.84 0.00 0.00 2.29
3498 5427 2.859165 ACCCAGTGACACCAACATAG 57.141 50.000 0.84 0.00 0.00 2.23
3499 5428 1.271379 ACCCAGTGACACCAACATAGC 60.271 52.381 0.84 0.00 0.00 2.97
3500 5429 1.003580 CCCAGTGACACCAACATAGCT 59.996 52.381 0.84 0.00 0.00 3.32
3501 5430 2.236146 CCCAGTGACACCAACATAGCTA 59.764 50.000 0.84 0.00 0.00 3.32
3502 5431 3.262420 CCAGTGACACCAACATAGCTAC 58.738 50.000 0.84 0.00 0.00 3.58
3503 5432 3.055819 CCAGTGACACCAACATAGCTACT 60.056 47.826 0.84 0.00 0.00 2.57
3504 5433 4.159693 CCAGTGACACCAACATAGCTACTA 59.840 45.833 0.84 0.00 0.00 1.82
3505 5434 5.103000 CAGTGACACCAACATAGCTACTAC 58.897 45.833 0.84 0.00 0.00 2.73
3506 5435 4.770531 AGTGACACCAACATAGCTACTACA 59.229 41.667 0.84 0.00 0.00 2.74
3507 5436 4.863131 GTGACACCAACATAGCTACTACAC 59.137 45.833 0.00 0.00 0.00 2.90
3508 5437 4.525100 TGACACCAACATAGCTACTACACA 59.475 41.667 0.00 0.00 0.00 3.72
3509 5438 4.817517 ACACCAACATAGCTACTACACAC 58.182 43.478 0.00 0.00 0.00 3.82
3510 5439 4.282449 ACACCAACATAGCTACTACACACA 59.718 41.667 0.00 0.00 0.00 3.72
3511 5440 4.625742 CACCAACATAGCTACTACACACAC 59.374 45.833 0.00 0.00 0.00 3.82
3512 5441 4.282449 ACCAACATAGCTACTACACACACA 59.718 41.667 0.00 0.00 0.00 3.72
3513 5442 4.625742 CCAACATAGCTACTACACACACAC 59.374 45.833 0.00 0.00 0.00 3.82
3514 5443 5.227152 CAACATAGCTACTACACACACACA 58.773 41.667 0.00 0.00 0.00 3.72
3515 5444 5.462530 ACATAGCTACTACACACACACAA 57.537 39.130 0.00 0.00 0.00 3.33
3516 5445 5.849510 ACATAGCTACTACACACACACAAA 58.150 37.500 0.00 0.00 0.00 2.83
3517 5446 6.285224 ACATAGCTACTACACACACACAAAA 58.715 36.000 0.00 0.00 0.00 2.44
3518 5447 6.934645 ACATAGCTACTACACACACACAAAAT 59.065 34.615 0.00 0.00 0.00 1.82
3519 5448 7.444183 ACATAGCTACTACACACACACAAAATT 59.556 33.333 0.00 0.00 0.00 1.82
3520 5449 8.931775 CATAGCTACTACACACACACAAAATTA 58.068 33.333 0.00 0.00 0.00 1.40
3521 5450 7.795482 AGCTACTACACACACACAAAATTAA 57.205 32.000 0.00 0.00 0.00 1.40
3522 5451 7.636326 AGCTACTACACACACACAAAATTAAC 58.364 34.615 0.00 0.00 0.00 2.01
3523 5452 7.281324 AGCTACTACACACACACAAAATTAACA 59.719 33.333 0.00 0.00 0.00 2.41
3524 5453 7.586300 GCTACTACACACACACAAAATTAACAG 59.414 37.037 0.00 0.00 0.00 3.16
3525 5454 6.791303 ACTACACACACACAAAATTAACAGG 58.209 36.000 0.00 0.00 0.00 4.00
3526 5455 4.429108 ACACACACACAAAATTAACAGGC 58.571 39.130 0.00 0.00 0.00 4.85
3527 5456 4.159506 ACACACACACAAAATTAACAGGCT 59.840 37.500 0.00 0.00 0.00 4.58
3528 5457 4.503734 CACACACACAAAATTAACAGGCTG 59.496 41.667 14.16 14.16 0.00 4.85
3529 5458 4.400884 ACACACACAAAATTAACAGGCTGA 59.599 37.500 23.66 0.00 0.00 4.26
3530 5459 4.739716 CACACACAAAATTAACAGGCTGAC 59.260 41.667 23.66 0.00 0.00 3.51
3531 5460 4.202111 ACACACAAAATTAACAGGCTGACC 60.202 41.667 23.66 0.00 0.00 4.02
3532 5461 3.957497 ACACAAAATTAACAGGCTGACCA 59.043 39.130 23.66 3.99 39.06 4.02
3533 5462 4.037923 ACACAAAATTAACAGGCTGACCAG 59.962 41.667 23.66 4.90 39.06 4.00
3534 5463 4.278170 CACAAAATTAACAGGCTGACCAGA 59.722 41.667 23.66 2.39 39.06 3.86
3535 5464 4.520492 ACAAAATTAACAGGCTGACCAGAG 59.480 41.667 23.66 6.30 39.06 3.35
3536 5465 4.373156 AAATTAACAGGCTGACCAGAGT 57.627 40.909 23.66 0.00 39.06 3.24
3537 5466 4.373156 AATTAACAGGCTGACCAGAGTT 57.627 40.909 23.66 5.46 39.06 3.01
3538 5467 5.499004 AATTAACAGGCTGACCAGAGTTA 57.501 39.130 23.66 4.38 39.06 2.24
3539 5468 5.700402 ATTAACAGGCTGACCAGAGTTAT 57.300 39.130 23.66 0.00 39.06 1.89
3540 5469 3.340814 AACAGGCTGACCAGAGTTATG 57.659 47.619 23.66 0.00 39.06 1.90
3541 5470 1.065854 ACAGGCTGACCAGAGTTATGC 60.066 52.381 23.66 0.00 39.06 3.14
3542 5471 1.209019 CAGGCTGACCAGAGTTATGCT 59.791 52.381 9.42 0.00 39.06 3.79
3543 5472 1.484240 AGGCTGACCAGAGTTATGCTC 59.516 52.381 0.47 0.00 44.45 4.26
3544 5473 1.208052 GGCTGACCAGAGTTATGCTCA 59.792 52.381 0.47 0.00 46.47 4.26
3545 5474 2.275318 GCTGACCAGAGTTATGCTCAC 58.725 52.381 0.47 0.00 46.47 3.51
3546 5475 2.534298 CTGACCAGAGTTATGCTCACG 58.466 52.381 0.00 0.00 46.47 4.35
3547 5476 1.281899 GACCAGAGTTATGCTCACGC 58.718 55.000 0.00 0.00 46.47 5.34
3558 5487 4.928398 CTCACGCAGGAGCTGAAT 57.072 55.556 0.00 0.00 39.10 2.57
3559 5488 2.381109 CTCACGCAGGAGCTGAATG 58.619 57.895 0.00 0.00 39.10 2.67
3560 5489 1.703438 CTCACGCAGGAGCTGAATGC 61.703 60.000 0.00 0.00 43.29 3.56
3561 5490 2.437359 ACGCAGGAGCTGAATGCC 60.437 61.111 0.00 0.00 44.23 4.40
3562 5491 2.437180 CGCAGGAGCTGAATGCCA 60.437 61.111 0.00 0.00 44.23 4.92
3563 5492 2.042259 CGCAGGAGCTGAATGCCAA 61.042 57.895 0.00 0.00 44.23 4.52
3564 5493 1.588824 CGCAGGAGCTGAATGCCAAA 61.589 55.000 0.00 0.00 44.23 3.28
3565 5494 0.108945 GCAGGAGCTGAATGCCAAAC 60.109 55.000 0.00 0.00 44.23 2.93
3566 5495 1.250328 CAGGAGCTGAATGCCAAACA 58.750 50.000 0.00 0.00 44.23 2.83
3567 5496 1.068055 CAGGAGCTGAATGCCAAACAC 60.068 52.381 0.00 0.00 44.23 3.32
3568 5497 0.961019 GGAGCTGAATGCCAAACACA 59.039 50.000 0.00 0.00 44.23 3.72
3569 5498 1.336240 GGAGCTGAATGCCAAACACAC 60.336 52.381 0.00 0.00 44.23 3.82
3570 5499 0.675633 AGCTGAATGCCAAACACACC 59.324 50.000 0.00 0.00 44.23 4.16
3571 5500 0.388659 GCTGAATGCCAAACACACCA 59.611 50.000 0.00 0.00 35.15 4.17
3572 5501 1.869342 GCTGAATGCCAAACACACCAC 60.869 52.381 0.00 0.00 35.15 4.16
3573 5502 0.749649 TGAATGCCAAACACACCACC 59.250 50.000 0.00 0.00 0.00 4.61
3574 5503 0.749649 GAATGCCAAACACACCACCA 59.250 50.000 0.00 0.00 0.00 4.17
3575 5504 0.752054 AATGCCAAACACACCACCAG 59.248 50.000 0.00 0.00 0.00 4.00
3576 5505 0.106268 ATGCCAAACACACCACCAGA 60.106 50.000 0.00 0.00 0.00 3.86
3577 5506 1.034838 TGCCAAACACACCACCAGAC 61.035 55.000 0.00 0.00 0.00 3.51
3578 5507 1.034838 GCCAAACACACCACCAGACA 61.035 55.000 0.00 0.00 0.00 3.41
3579 5508 0.738389 CCAAACACACCACCAGACAC 59.262 55.000 0.00 0.00 0.00 3.67
3580 5509 0.738389 CAAACACACCACCAGACACC 59.262 55.000 0.00 0.00 0.00 4.16
3581 5510 0.329931 AAACACACCACCAGACACCA 59.670 50.000 0.00 0.00 0.00 4.17
3582 5511 0.107214 AACACACCACCAGACACCAG 60.107 55.000 0.00 0.00 0.00 4.00
3583 5512 0.980754 ACACACCACCAGACACCAGA 60.981 55.000 0.00 0.00 0.00 3.86
3584 5513 0.180171 CACACCACCAGACACCAGAA 59.820 55.000 0.00 0.00 0.00 3.02
3585 5514 0.180406 ACACCACCAGACACCAGAAC 59.820 55.000 0.00 0.00 0.00 3.01
3586 5515 0.180171 CACCACCAGACACCAGAACA 59.820 55.000 0.00 0.00 0.00 3.18
3587 5516 0.180406 ACCACCAGACACCAGAACAC 59.820 55.000 0.00 0.00 0.00 3.32
3588 5517 0.535102 CCACCAGACACCAGAACACC 60.535 60.000 0.00 0.00 0.00 4.16
3589 5518 0.180171 CACCAGACACCAGAACACCA 59.820 55.000 0.00 0.00 0.00 4.17
3590 5519 0.916086 ACCAGACACCAGAACACCAA 59.084 50.000 0.00 0.00 0.00 3.67
3591 5520 1.283613 ACCAGACACCAGAACACCAAA 59.716 47.619 0.00 0.00 0.00 3.28
3592 5521 2.291282 ACCAGACACCAGAACACCAAAA 60.291 45.455 0.00 0.00 0.00 2.44
3593 5522 2.358898 CCAGACACCAGAACACCAAAAG 59.641 50.000 0.00 0.00 0.00 2.27
3594 5523 3.278574 CAGACACCAGAACACCAAAAGA 58.721 45.455 0.00 0.00 0.00 2.52
3595 5524 3.885297 CAGACACCAGAACACCAAAAGAT 59.115 43.478 0.00 0.00 0.00 2.40
3596 5525 5.063204 CAGACACCAGAACACCAAAAGATA 58.937 41.667 0.00 0.00 0.00 1.98
3597 5526 5.530915 CAGACACCAGAACACCAAAAGATAA 59.469 40.000 0.00 0.00 0.00 1.75
3598 5527 6.207417 CAGACACCAGAACACCAAAAGATAAT 59.793 38.462 0.00 0.00 0.00 1.28
3599 5528 6.431234 AGACACCAGAACACCAAAAGATAATC 59.569 38.462 0.00 0.00 0.00 1.75
3600 5529 5.476945 ACACCAGAACACCAAAAGATAATCC 59.523 40.000 0.00 0.00 0.00 3.01
3601 5530 4.700213 ACCAGAACACCAAAAGATAATCCG 59.300 41.667 0.00 0.00 0.00 4.18
3602 5531 4.438744 CCAGAACACCAAAAGATAATCCGC 60.439 45.833 0.00 0.00 0.00 5.54
3603 5532 4.155826 CAGAACACCAAAAGATAATCCGCA 59.844 41.667 0.00 0.00 0.00 5.69
3604 5533 4.764823 AGAACACCAAAAGATAATCCGCAA 59.235 37.500 0.00 0.00 0.00 4.85
3605 5534 4.434713 ACACCAAAAGATAATCCGCAAC 57.565 40.909 0.00 0.00 0.00 4.17
3606 5535 3.823873 ACACCAAAAGATAATCCGCAACA 59.176 39.130 0.00 0.00 0.00 3.33
3607 5536 4.082787 ACACCAAAAGATAATCCGCAACAG 60.083 41.667 0.00 0.00 0.00 3.16
3608 5537 4.155826 CACCAAAAGATAATCCGCAACAGA 59.844 41.667 0.00 0.00 0.00 3.41
3609 5538 4.396166 ACCAAAAGATAATCCGCAACAGAG 59.604 41.667 0.00 0.00 0.00 3.35
3610 5539 4.635765 CCAAAAGATAATCCGCAACAGAGA 59.364 41.667 0.00 0.00 0.00 3.10
3611 5540 5.123820 CCAAAAGATAATCCGCAACAGAGAA 59.876 40.000 0.00 0.00 0.00 2.87
3612 5541 6.349280 CCAAAAGATAATCCGCAACAGAGAAA 60.349 38.462 0.00 0.00 0.00 2.52
3613 5542 7.253422 CAAAAGATAATCCGCAACAGAGAAAT 58.747 34.615 0.00 0.00 0.00 2.17
3614 5543 5.998454 AGATAATCCGCAACAGAGAAATG 57.002 39.130 0.00 0.00 0.00 2.32
3615 5544 2.927553 AATCCGCAACAGAGAAATGC 57.072 45.000 0.00 0.00 36.74 3.56
3616 5545 1.825090 ATCCGCAACAGAGAAATGCA 58.175 45.000 0.00 0.00 40.04 3.96
3617 5546 1.825090 TCCGCAACAGAGAAATGCAT 58.175 45.000 0.00 0.00 40.04 3.96
3618 5547 1.469703 TCCGCAACAGAGAAATGCATG 59.530 47.619 0.00 0.00 40.04 4.06
3619 5548 1.469703 CCGCAACAGAGAAATGCATGA 59.530 47.619 0.00 0.00 40.04 3.07
3620 5549 2.512885 CGCAACAGAGAAATGCATGAC 58.487 47.619 0.00 0.00 40.04 3.06
3621 5550 2.161012 CGCAACAGAGAAATGCATGACT 59.839 45.455 0.00 2.34 40.04 3.41
3622 5551 3.727079 CGCAACAGAGAAATGCATGACTC 60.727 47.826 19.35 19.35 40.04 3.36
3623 5552 3.189910 GCAACAGAGAAATGCATGACTCA 59.810 43.478 25.02 0.00 39.81 3.41
3624 5553 4.672024 GCAACAGAGAAATGCATGACTCAG 60.672 45.833 25.02 21.32 39.81 3.35
3625 5554 3.607741 ACAGAGAAATGCATGACTCAGG 58.392 45.455 25.02 20.26 32.59 3.86
3626 5555 3.262660 ACAGAGAAATGCATGACTCAGGA 59.737 43.478 25.02 0.00 32.59 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 0.758734 TGCCTTGCACAGTAGTCACT 59.241 50.000 0.00 0.00 31.71 3.41
157 158 0.391661 CCGATGCCTTGCACAGTAGT 60.392 55.000 0.00 0.00 43.04 2.73
159 160 1.078497 CCCGATGCCTTGCACAGTA 60.078 57.895 0.00 0.00 43.04 2.74
204 211 1.836383 GACGAATAATGCGACTCCGT 58.164 50.000 0.00 0.00 38.24 4.69
217 224 2.420043 CCATACGGGGCGACGAAT 59.580 61.111 0.00 0.00 37.61 3.34
299 308 0.738975 TGGACGTCAGATCGATGACC 59.261 55.000 18.91 15.60 45.56 4.02
341 351 1.477195 CCCTACTCTTCCTCGTCGGAT 60.477 57.143 0.00 0.00 42.70 4.18
543 557 7.977789 ATCCATATTATTACATGCAACGTGA 57.022 32.000 0.00 0.00 0.00 4.35
544 558 8.904712 CAAATCCATATTATTACATGCAACGTG 58.095 33.333 0.00 0.00 0.00 4.49
545 559 8.845227 TCAAATCCATATTATTACATGCAACGT 58.155 29.630 0.00 0.00 0.00 3.99
546 560 9.333497 CTCAAATCCATATTATTACATGCAACG 57.667 33.333 0.00 0.00 0.00 4.10
660 675 0.541863 AAATCCGATCCTCAACCGCT 59.458 50.000 0.00 0.00 0.00 5.52
664 679 3.134458 CCTAGCAAATCCGATCCTCAAC 58.866 50.000 0.00 0.00 0.00 3.18
671 686 0.393077 CCCGACCTAGCAAATCCGAT 59.607 55.000 0.00 0.00 0.00 4.18
682 698 1.529948 CATCTACGGCCCCGACCTA 60.530 63.158 14.44 0.00 42.83 3.08
684 700 4.603946 GCATCTACGGCCCCGACC 62.604 72.222 14.44 0.00 42.83 4.79
708 724 4.328983 TGCACTGCTAAGCTTAATTCGTAC 59.671 41.667 7.74 0.00 0.00 3.67
711 727 4.201851 ACATGCACTGCTAAGCTTAATTCG 60.202 41.667 7.74 0.00 0.00 3.34
717 733 2.189594 TCACATGCACTGCTAAGCTT 57.810 45.000 3.48 3.48 0.00 3.74
729 745 3.058160 ACCAGCGGCTTCACATGC 61.058 61.111 0.00 0.00 0.00 4.06
924 964 1.700523 CAAATGTGGAACCGTGCATG 58.299 50.000 0.00 0.00 34.36 4.06
948 988 3.119137 CGGAAAAGATTTTGTGGATCCCC 60.119 47.826 9.90 0.00 0.00 4.81
1059 2663 5.168569 CACGATTCTACTTAGCAAGTTGGA 58.831 41.667 4.75 1.57 42.81 3.53
1080 2710 6.026947 AGATACTCCATATTCTAACGGCAC 57.973 41.667 0.00 0.00 0.00 5.01
1095 2725 5.263968 TCATTCAAGACCGAAGATACTCC 57.736 43.478 0.00 0.00 0.00 3.85
1151 2792 2.966708 CTGCTGACAACAACGAAAATCG 59.033 45.455 0.00 0.00 46.93 3.34
1153 2794 2.098934 TGCTGCTGACAACAACGAAAAT 59.901 40.909 0.00 0.00 0.00 1.82
1378 3054 3.818787 CGCCGCGTACAGTAGGGT 61.819 66.667 4.92 0.00 0.00 4.34
1977 3653 3.315142 GATCAGGACCAGCCACGCA 62.315 63.158 0.00 0.00 40.02 5.24
2139 3818 3.873801 GCATGTTGGAGAATAGGTGGTGT 60.874 47.826 0.00 0.00 0.00 4.16
2223 3902 3.546714 AAAGGGGGTGGCGTCGAAG 62.547 63.158 0.00 0.00 0.00 3.79
2230 3909 4.018409 CTTAGCAAAGGGGGTGGC 57.982 61.111 0.00 0.00 0.00 5.01
2376 4280 1.705337 GCCATGTCAATGACCGGACG 61.705 60.000 19.34 1.92 36.83 4.79
2400 4306 1.012343 CAGACGCACACACAACACG 60.012 57.895 0.00 0.00 0.00 4.49
2434 4340 2.897326 CACGACATGGATGGGGTAGATA 59.103 50.000 0.00 0.00 0.00 1.98
2444 4350 3.994392 GTCTACAACAACACGACATGGAT 59.006 43.478 0.00 0.00 0.00 3.41
2532 4450 8.856103 CATTCCCAAAGTACTCCTTTTTCTTTA 58.144 33.333 0.00 0.00 41.51 1.85
2536 4454 5.773176 TCCATTCCCAAAGTACTCCTTTTTC 59.227 40.000 0.00 0.00 41.51 2.29
2549 4467 3.147553 TCGTGTTCATCCATTCCCAAA 57.852 42.857 0.00 0.00 0.00 3.28
2550 4468 2.869101 TCGTGTTCATCCATTCCCAA 57.131 45.000 0.00 0.00 0.00 4.12
2568 4486 3.136808 GGTCGAATGAGCAACCATTTC 57.863 47.619 0.00 0.00 42.23 2.17
2581 4499 1.882352 GCAGGACAACCTTGGTCGAAT 60.882 52.381 0.00 0.00 45.36 3.34
2582 4500 0.534203 GCAGGACAACCTTGGTCGAA 60.534 55.000 0.00 0.00 45.36 3.71
2586 4504 1.456287 GAGGCAGGACAACCTTGGT 59.544 57.895 0.00 0.00 45.36 3.67
2617 4535 4.047883 AGGGAATACTAGGCTGGACAATT 58.952 43.478 4.33 1.33 0.00 2.32
2619 4537 3.130734 AGGGAATACTAGGCTGGACAA 57.869 47.619 4.33 0.00 0.00 3.18
2620 4538 2.868964 AGGGAATACTAGGCTGGACA 57.131 50.000 4.33 0.00 0.00 4.02
2667 4596 7.041030 TGTTTGAAATGCTTTGTACTTCCGATA 60.041 33.333 0.00 0.00 0.00 2.92
2669 4598 5.066634 TGTTTGAAATGCTTTGTACTTCCGA 59.933 36.000 0.00 0.00 0.00 4.55
2711 4640 7.516785 CGTTCGGTGGTCTTATAAATCTCAATG 60.517 40.741 0.00 0.00 0.00 2.82
2714 4643 5.125900 TCGTTCGGTGGTCTTATAAATCTCA 59.874 40.000 0.00 0.00 0.00 3.27
2721 4650 2.164219 GTGGTCGTTCGGTGGTCTTATA 59.836 50.000 0.00 0.00 0.00 0.98
2892 4821 7.497249 GTGCTTCAGATCTATGTAAGGTTCAAT 59.503 37.037 0.00 0.00 0.00 2.57
2982 4911 1.658717 CGAAGCTCCGGCGTAGATG 60.659 63.158 2.79 0.00 44.37 2.90
3019 4948 1.618837 TCTGAACCTCCTTGAGTTCGG 59.381 52.381 5.54 5.54 32.62 4.30
3034 4963 4.369182 GAGTTTGTCTTTCGGACTCTGAA 58.631 43.478 0.00 0.00 44.74 3.02
3035 4964 3.550233 CGAGTTTGTCTTTCGGACTCTGA 60.550 47.826 0.00 0.00 44.74 3.27
3045 4974 7.312899 ACACAATCTTTTTCGAGTTTGTCTTT 58.687 30.769 0.00 0.00 37.43 2.52
3060 4989 9.669353 GCATAAATATCGATCAACACAATCTTT 57.331 29.630 0.00 0.00 0.00 2.52
3075 5004 4.275689 TGCTGAAACAGGGCATAAATATCG 59.724 41.667 0.00 0.00 31.21 2.92
3221 5150 0.670162 ACTGCTTGCAACGCTCAAAT 59.330 45.000 17.72 1.85 0.00 2.32
3266 5195 1.488812 AGTTCCACTGTAGCCACACAA 59.511 47.619 0.00 0.00 0.00 3.33
3321 5250 0.667453 GGTTACGCCCGGTTCAAAAA 59.333 50.000 0.00 0.00 0.00 1.94
3322 5251 2.329244 GGTTACGCCCGGTTCAAAA 58.671 52.632 0.00 0.00 0.00 2.44
3323 5252 4.061949 GGTTACGCCCGGTTCAAA 57.938 55.556 0.00 0.00 0.00 2.69
3332 5261 2.019249 GTAATGGAAAGGGGTTACGCC 58.981 52.381 10.69 10.69 36.67 5.68
3333 5262 2.995283 AGTAATGGAAAGGGGTTACGC 58.005 47.619 0.00 0.00 0.00 4.42
3334 5263 5.005094 TGAAAGTAATGGAAAGGGGTTACG 58.995 41.667 0.00 0.00 0.00 3.18
3335 5264 8.464404 GTTATGAAAGTAATGGAAAGGGGTTAC 58.536 37.037 0.00 0.00 0.00 2.50
3336 5265 7.337436 CGTTATGAAAGTAATGGAAAGGGGTTA 59.663 37.037 0.00 0.00 0.00 2.85
3337 5266 6.152154 CGTTATGAAAGTAATGGAAAGGGGTT 59.848 38.462 0.00 0.00 0.00 4.11
3338 5267 5.650703 CGTTATGAAAGTAATGGAAAGGGGT 59.349 40.000 0.00 0.00 0.00 4.95
3339 5268 5.883673 TCGTTATGAAAGTAATGGAAAGGGG 59.116 40.000 0.00 0.00 0.00 4.79
3340 5269 6.995511 TCGTTATGAAAGTAATGGAAAGGG 57.004 37.500 0.00 0.00 0.00 3.95
3341 5270 9.855021 ATTTTCGTTATGAAAGTAATGGAAAGG 57.145 29.630 0.00 0.00 46.72 3.11
3351 5280 9.659830 GAACTGTTGTATTTTCGTTATGAAAGT 57.340 29.630 0.00 0.35 46.72 2.66
3352 5281 9.658475 TGAACTGTTGTATTTTCGTTATGAAAG 57.342 29.630 0.00 0.00 46.72 2.62
3354 5283 9.440784 GTTGAACTGTTGTATTTTCGTTATGAA 57.559 29.630 0.00 0.00 33.85 2.57
3355 5284 7.794810 CGTTGAACTGTTGTATTTTCGTTATGA 59.205 33.333 0.00 0.00 0.00 2.15
3356 5285 7.794810 TCGTTGAACTGTTGTATTTTCGTTATG 59.205 33.333 0.00 0.00 0.00 1.90
3357 5286 7.795272 GTCGTTGAACTGTTGTATTTTCGTTAT 59.205 33.333 0.00 0.00 0.00 1.89
3358 5287 7.118724 GTCGTTGAACTGTTGTATTTTCGTTA 58.881 34.615 0.00 0.00 0.00 3.18
3359 5288 5.961263 GTCGTTGAACTGTTGTATTTTCGTT 59.039 36.000 0.00 0.00 0.00 3.85
3360 5289 5.495502 GTCGTTGAACTGTTGTATTTTCGT 58.504 37.500 0.00 0.00 0.00 3.85
3361 5290 4.901881 GGTCGTTGAACTGTTGTATTTTCG 59.098 41.667 0.00 0.00 0.00 3.46
3362 5291 5.679792 GTGGTCGTTGAACTGTTGTATTTTC 59.320 40.000 0.00 0.00 0.00 2.29
3363 5292 5.449451 GGTGGTCGTTGAACTGTTGTATTTT 60.449 40.000 0.00 0.00 0.00 1.82
3364 5293 4.035909 GGTGGTCGTTGAACTGTTGTATTT 59.964 41.667 0.00 0.00 0.00 1.40
3365 5294 3.562557 GGTGGTCGTTGAACTGTTGTATT 59.437 43.478 0.00 0.00 0.00 1.89
3366 5295 3.135994 GGTGGTCGTTGAACTGTTGTAT 58.864 45.455 0.00 0.00 0.00 2.29
3367 5296 2.553086 GGTGGTCGTTGAACTGTTGTA 58.447 47.619 0.00 0.00 0.00 2.41
3368 5297 1.375551 GGTGGTCGTTGAACTGTTGT 58.624 50.000 0.00 0.00 0.00 3.32
3369 5298 0.661020 GGGTGGTCGTTGAACTGTTG 59.339 55.000 0.00 0.00 0.00 3.33
3370 5299 0.253610 TGGGTGGTCGTTGAACTGTT 59.746 50.000 0.00 0.00 0.00 3.16
3371 5300 0.179056 CTGGGTGGTCGTTGAACTGT 60.179 55.000 0.00 0.00 0.00 3.55
3372 5301 0.884704 CCTGGGTGGTCGTTGAACTG 60.885 60.000 0.00 0.00 0.00 3.16
3373 5302 1.052124 TCCTGGGTGGTCGTTGAACT 61.052 55.000 0.00 0.00 37.07 3.01
3374 5303 0.179040 TTCCTGGGTGGTCGTTGAAC 60.179 55.000 0.00 0.00 37.07 3.18
3375 5304 0.547075 TTTCCTGGGTGGTCGTTGAA 59.453 50.000 0.00 0.00 37.07 2.69
3376 5305 0.179040 GTTTCCTGGGTGGTCGTTGA 60.179 55.000 0.00 0.00 37.07 3.18
3377 5306 1.170290 GGTTTCCTGGGTGGTCGTTG 61.170 60.000 0.00 0.00 37.07 4.10
3378 5307 1.149854 GGTTTCCTGGGTGGTCGTT 59.850 57.895 0.00 0.00 37.07 3.85
3379 5308 1.637724 TTGGTTTCCTGGGTGGTCGT 61.638 55.000 0.00 0.00 37.07 4.34
3380 5309 0.466555 TTTGGTTTCCTGGGTGGTCG 60.467 55.000 0.00 0.00 37.07 4.79
3381 5310 1.133606 TCTTTGGTTTCCTGGGTGGTC 60.134 52.381 0.00 0.00 37.07 4.02
3382 5311 0.930726 TCTTTGGTTTCCTGGGTGGT 59.069 50.000 0.00 0.00 37.07 4.16
3383 5312 2.080654 TTCTTTGGTTTCCTGGGTGG 57.919 50.000 0.00 0.00 37.10 4.61
3384 5313 2.365293 CCTTTCTTTGGTTTCCTGGGTG 59.635 50.000 0.00 0.00 0.00 4.61
3385 5314 2.677914 CCTTTCTTTGGTTTCCTGGGT 58.322 47.619 0.00 0.00 0.00 4.51
3386 5315 1.970640 CCCTTTCTTTGGTTTCCTGGG 59.029 52.381 0.00 0.00 0.00 4.45
3387 5316 1.970640 CCCCTTTCTTTGGTTTCCTGG 59.029 52.381 0.00 0.00 0.00 4.45
3388 5317 2.957474 TCCCCTTTCTTTGGTTTCCTG 58.043 47.619 0.00 0.00 0.00 3.86
3389 5318 3.305720 GTTCCCCTTTCTTTGGTTTCCT 58.694 45.455 0.00 0.00 0.00 3.36
3390 5319 2.035449 CGTTCCCCTTTCTTTGGTTTCC 59.965 50.000 0.00 0.00 0.00 3.13
3391 5320 2.545113 GCGTTCCCCTTTCTTTGGTTTC 60.545 50.000 0.00 0.00 0.00 2.78
3392 5321 1.411246 GCGTTCCCCTTTCTTTGGTTT 59.589 47.619 0.00 0.00 0.00 3.27
3393 5322 1.037493 GCGTTCCCCTTTCTTTGGTT 58.963 50.000 0.00 0.00 0.00 3.67
3394 5323 1.170290 CGCGTTCCCCTTTCTTTGGT 61.170 55.000 0.00 0.00 0.00 3.67
3395 5324 0.887387 TCGCGTTCCCCTTTCTTTGG 60.887 55.000 5.77 0.00 0.00 3.28
3396 5325 0.517316 CTCGCGTTCCCCTTTCTTTG 59.483 55.000 5.77 0.00 0.00 2.77
3397 5326 0.108019 ACTCGCGTTCCCCTTTCTTT 59.892 50.000 5.77 0.00 0.00 2.52
3398 5327 0.108019 AACTCGCGTTCCCCTTTCTT 59.892 50.000 5.77 0.00 0.00 2.52
3399 5328 0.320508 GAACTCGCGTTCCCCTTTCT 60.321 55.000 5.77 0.00 42.93 2.52
3400 5329 2.160063 GAACTCGCGTTCCCCTTTC 58.840 57.895 5.77 0.00 42.93 2.62
3401 5330 4.373771 GAACTCGCGTTCCCCTTT 57.626 55.556 5.77 0.00 42.93 3.11
3408 5337 1.549170 AGGGATACTTGAACTCGCGTT 59.451 47.619 5.77 0.00 35.68 4.84
3409 5338 1.183549 AGGGATACTTGAACTCGCGT 58.816 50.000 5.77 0.00 0.00 6.01
3418 5347 3.449746 TGGGTTTTCCAGGGATACTTG 57.550 47.619 0.00 0.00 41.46 3.16
3428 5357 2.885894 GGTGTTTATCGTGGGTTTTCCA 59.114 45.455 0.00 0.00 44.79 3.53
3429 5358 2.229543 GGGTGTTTATCGTGGGTTTTCC 59.770 50.000 0.00 0.00 39.75 3.13
3430 5359 2.095617 CGGGTGTTTATCGTGGGTTTTC 60.096 50.000 0.00 0.00 0.00 2.29
3431 5360 1.881324 CGGGTGTTTATCGTGGGTTTT 59.119 47.619 0.00 0.00 0.00 2.43
3432 5361 1.202794 ACGGGTGTTTATCGTGGGTTT 60.203 47.619 0.00 0.00 35.70 3.27
3433 5362 0.397564 ACGGGTGTTTATCGTGGGTT 59.602 50.000 0.00 0.00 35.70 4.11
3434 5363 0.037046 GACGGGTGTTTATCGTGGGT 60.037 55.000 0.00 0.00 37.25 4.51
3435 5364 0.037139 TGACGGGTGTTTATCGTGGG 60.037 55.000 0.00 0.00 37.25 4.61
3436 5365 1.931172 GATGACGGGTGTTTATCGTGG 59.069 52.381 0.00 0.00 37.25 4.94
3437 5366 1.586578 CGATGACGGGTGTTTATCGTG 59.413 52.381 0.00 0.00 39.03 4.35
3438 5367 1.917273 CGATGACGGGTGTTTATCGT 58.083 50.000 0.00 0.00 39.03 3.73
3450 5379 1.482621 CGATGAACTGCCCGATGACG 61.483 60.000 0.00 0.00 39.43 4.35
3451 5380 1.766143 GCGATGAACTGCCCGATGAC 61.766 60.000 0.00 0.00 0.00 3.06
3452 5381 1.521457 GCGATGAACTGCCCGATGA 60.521 57.895 0.00 0.00 0.00 2.92
3453 5382 2.874694 CGCGATGAACTGCCCGATG 61.875 63.158 0.00 0.00 0.00 3.84
3454 5383 2.586079 CGCGATGAACTGCCCGAT 60.586 61.111 0.00 0.00 0.00 4.18
3455 5384 4.812476 CCGCGATGAACTGCCCGA 62.812 66.667 8.23 0.00 0.00 5.14
3459 5388 3.969250 TTCCCCCGCGATGAACTGC 62.969 63.158 8.23 0.00 0.00 4.40
3460 5389 0.958382 TTTTCCCCCGCGATGAACTG 60.958 55.000 8.23 0.00 0.00 3.16
3461 5390 0.958876 GTTTTCCCCCGCGATGAACT 60.959 55.000 8.23 0.00 0.00 3.01
3462 5391 1.504900 GTTTTCCCCCGCGATGAAC 59.495 57.895 8.23 0.00 0.00 3.18
3463 5392 1.676303 GGTTTTCCCCCGCGATGAA 60.676 57.895 8.23 4.01 0.00 2.57
3464 5393 2.045731 GGTTTTCCCCCGCGATGA 60.046 61.111 8.23 0.00 0.00 2.92
3474 5403 1.407618 GTTGGTGTCACTGGGTTTTCC 59.592 52.381 2.35 0.00 39.75 3.13
3475 5404 2.096248 TGTTGGTGTCACTGGGTTTTC 58.904 47.619 2.35 0.00 0.00 2.29
3476 5405 2.223803 TGTTGGTGTCACTGGGTTTT 57.776 45.000 2.35 0.00 0.00 2.43
3477 5406 2.452600 ATGTTGGTGTCACTGGGTTT 57.547 45.000 2.35 0.00 0.00 3.27
3478 5407 2.814097 GCTATGTTGGTGTCACTGGGTT 60.814 50.000 2.35 0.00 0.00 4.11
3479 5408 1.271379 GCTATGTTGGTGTCACTGGGT 60.271 52.381 2.35 0.00 0.00 4.51
3480 5409 1.003580 AGCTATGTTGGTGTCACTGGG 59.996 52.381 2.35 0.00 0.00 4.45
3481 5410 2.479566 AGCTATGTTGGTGTCACTGG 57.520 50.000 2.35 0.00 0.00 4.00
3482 5411 4.193826 AGTAGCTATGTTGGTGTCACTG 57.806 45.455 2.35 0.00 0.00 3.66
3483 5412 4.770531 TGTAGTAGCTATGTTGGTGTCACT 59.229 41.667 2.35 0.00 0.00 3.41
3484 5413 4.863131 GTGTAGTAGCTATGTTGGTGTCAC 59.137 45.833 0.00 0.00 0.00 3.67
3485 5414 4.525100 TGTGTAGTAGCTATGTTGGTGTCA 59.475 41.667 0.00 0.00 0.00 3.58
3486 5415 4.863131 GTGTGTAGTAGCTATGTTGGTGTC 59.137 45.833 0.00 0.00 0.00 3.67
3487 5416 4.282449 TGTGTGTAGTAGCTATGTTGGTGT 59.718 41.667 0.00 0.00 0.00 4.16
3488 5417 4.625742 GTGTGTGTAGTAGCTATGTTGGTG 59.374 45.833 0.00 0.00 0.00 4.17
3489 5418 4.282449 TGTGTGTGTAGTAGCTATGTTGGT 59.718 41.667 0.00 0.00 0.00 3.67
3490 5419 4.625742 GTGTGTGTGTAGTAGCTATGTTGG 59.374 45.833 0.00 0.00 0.00 3.77
3491 5420 5.227152 TGTGTGTGTGTAGTAGCTATGTTG 58.773 41.667 0.00 0.00 0.00 3.33
3492 5421 5.462530 TGTGTGTGTGTAGTAGCTATGTT 57.537 39.130 0.00 0.00 0.00 2.71
3493 5422 5.462530 TTGTGTGTGTGTAGTAGCTATGT 57.537 39.130 0.00 0.00 0.00 2.29
3494 5423 6.779115 TTTTGTGTGTGTGTAGTAGCTATG 57.221 37.500 0.00 0.00 0.00 2.23
3495 5424 7.979444 AATTTTGTGTGTGTGTAGTAGCTAT 57.021 32.000 0.00 0.00 0.00 2.97
3496 5425 8.767085 GTTAATTTTGTGTGTGTGTAGTAGCTA 58.233 33.333 0.00 0.00 0.00 3.32
3497 5426 7.281324 TGTTAATTTTGTGTGTGTGTAGTAGCT 59.719 33.333 0.00 0.00 0.00 3.32
3498 5427 7.411274 TGTTAATTTTGTGTGTGTGTAGTAGC 58.589 34.615 0.00 0.00 0.00 3.58
3499 5428 8.067784 CCTGTTAATTTTGTGTGTGTGTAGTAG 58.932 37.037 0.00 0.00 0.00 2.57
3500 5429 7.467539 GCCTGTTAATTTTGTGTGTGTGTAGTA 60.468 37.037 0.00 0.00 0.00 1.82
3501 5430 6.679392 GCCTGTTAATTTTGTGTGTGTGTAGT 60.679 38.462 0.00 0.00 0.00 2.73
3502 5431 5.685511 GCCTGTTAATTTTGTGTGTGTGTAG 59.314 40.000 0.00 0.00 0.00 2.74
3503 5432 5.358442 AGCCTGTTAATTTTGTGTGTGTGTA 59.642 36.000 0.00 0.00 0.00 2.90
3504 5433 4.159506 AGCCTGTTAATTTTGTGTGTGTGT 59.840 37.500 0.00 0.00 0.00 3.72
3505 5434 4.503734 CAGCCTGTTAATTTTGTGTGTGTG 59.496 41.667 0.00 0.00 0.00 3.82
3506 5435 4.400884 TCAGCCTGTTAATTTTGTGTGTGT 59.599 37.500 0.00 0.00 0.00 3.72
3507 5436 4.739716 GTCAGCCTGTTAATTTTGTGTGTG 59.260 41.667 0.00 0.00 0.00 3.82
3508 5437 4.202111 GGTCAGCCTGTTAATTTTGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
3509 5438 4.202101 TGGTCAGCCTGTTAATTTTGTGTG 60.202 41.667 0.00 0.00 35.27 3.82
3510 5439 3.957497 TGGTCAGCCTGTTAATTTTGTGT 59.043 39.130 0.00 0.00 35.27 3.72
3511 5440 4.278170 TCTGGTCAGCCTGTTAATTTTGTG 59.722 41.667 0.00 0.00 35.49 3.33
3512 5441 4.469657 TCTGGTCAGCCTGTTAATTTTGT 58.530 39.130 0.00 0.00 35.49 2.83
3513 5442 4.520492 ACTCTGGTCAGCCTGTTAATTTTG 59.480 41.667 0.00 0.00 35.49 2.44
3514 5443 4.729868 ACTCTGGTCAGCCTGTTAATTTT 58.270 39.130 0.00 0.00 35.49 1.82
3515 5444 4.373156 ACTCTGGTCAGCCTGTTAATTT 57.627 40.909 0.00 0.00 35.49 1.82
3516 5445 4.373156 AACTCTGGTCAGCCTGTTAATT 57.627 40.909 0.00 0.00 35.49 1.40
3517 5446 5.431765 CATAACTCTGGTCAGCCTGTTAAT 58.568 41.667 0.00 3.70 33.39 1.40
3518 5447 4.832248 CATAACTCTGGTCAGCCTGTTAA 58.168 43.478 0.00 0.00 33.39 2.01
3519 5448 3.369471 GCATAACTCTGGTCAGCCTGTTA 60.369 47.826 0.00 10.66 35.49 2.41
3520 5449 2.616510 GCATAACTCTGGTCAGCCTGTT 60.617 50.000 0.00 2.16 35.49 3.16
3521 5450 1.065854 GCATAACTCTGGTCAGCCTGT 60.066 52.381 0.00 0.00 35.49 4.00
3522 5451 1.209019 AGCATAACTCTGGTCAGCCTG 59.791 52.381 0.00 0.00 35.27 4.85
3523 5452 1.484240 GAGCATAACTCTGGTCAGCCT 59.516 52.381 0.00 0.00 42.62 4.58
3524 5453 1.208052 TGAGCATAACTCTGGTCAGCC 59.792 52.381 2.12 0.00 45.80 4.85
3525 5454 2.680312 TGAGCATAACTCTGGTCAGC 57.320 50.000 2.12 0.00 45.80 4.26
3541 5470 1.703438 GCATTCAGCTCCTGCGTGAG 61.703 60.000 0.00 0.00 45.42 3.51
3542 5471 1.742880 GCATTCAGCTCCTGCGTGA 60.743 57.895 0.00 0.00 45.42 4.35
3543 5472 2.758089 GGCATTCAGCTCCTGCGTG 61.758 63.158 5.79 0.00 45.42 5.34
3544 5473 2.437359 GGCATTCAGCTCCTGCGT 60.437 61.111 5.79 0.00 45.42 5.24
3545 5474 1.588824 TTTGGCATTCAGCTCCTGCG 61.589 55.000 5.79 0.00 45.42 5.18
3546 5475 0.108945 GTTTGGCATTCAGCTCCTGC 60.109 55.000 3.60 3.60 44.79 4.85
3547 5476 1.068055 GTGTTTGGCATTCAGCTCCTG 60.068 52.381 0.00 0.00 44.79 3.86
3548 5477 1.251251 GTGTTTGGCATTCAGCTCCT 58.749 50.000 0.00 0.00 44.79 3.69
3549 5478 0.961019 TGTGTTTGGCATTCAGCTCC 59.039 50.000 0.00 0.00 44.79 4.70
3550 5479 1.336240 GGTGTGTTTGGCATTCAGCTC 60.336 52.381 0.00 0.00 44.79 4.09
3551 5480 0.675633 GGTGTGTTTGGCATTCAGCT 59.324 50.000 0.00 0.00 44.79 4.24
3552 5481 0.388659 TGGTGTGTTTGGCATTCAGC 59.611 50.000 0.00 0.00 44.65 4.26
3553 5482 1.269726 GGTGGTGTGTTTGGCATTCAG 60.270 52.381 0.00 0.00 0.00 3.02
3554 5483 0.749649 GGTGGTGTGTTTGGCATTCA 59.250 50.000 0.00 0.00 0.00 2.57
3555 5484 0.749649 TGGTGGTGTGTTTGGCATTC 59.250 50.000 0.00 0.00 0.00 2.67
3556 5485 0.752054 CTGGTGGTGTGTTTGGCATT 59.248 50.000 0.00 0.00 0.00 3.56
3557 5486 0.106268 TCTGGTGGTGTGTTTGGCAT 60.106 50.000 0.00 0.00 0.00 4.40
3558 5487 1.034838 GTCTGGTGGTGTGTTTGGCA 61.035 55.000 0.00 0.00 0.00 4.92
3559 5488 1.034838 TGTCTGGTGGTGTGTTTGGC 61.035 55.000 0.00 0.00 0.00 4.52
3560 5489 0.738389 GTGTCTGGTGGTGTGTTTGG 59.262 55.000 0.00 0.00 0.00 3.28
3561 5490 0.738389 GGTGTCTGGTGGTGTGTTTG 59.262 55.000 0.00 0.00 0.00 2.93
3562 5491 0.329931 TGGTGTCTGGTGGTGTGTTT 59.670 50.000 0.00 0.00 0.00 2.83
3563 5492 0.107214 CTGGTGTCTGGTGGTGTGTT 60.107 55.000 0.00 0.00 0.00 3.32
3564 5493 0.980754 TCTGGTGTCTGGTGGTGTGT 60.981 55.000 0.00 0.00 0.00 3.72
3565 5494 0.180171 TTCTGGTGTCTGGTGGTGTG 59.820 55.000 0.00 0.00 0.00 3.82
3566 5495 0.180406 GTTCTGGTGTCTGGTGGTGT 59.820 55.000 0.00 0.00 0.00 4.16
3567 5496 0.180171 TGTTCTGGTGTCTGGTGGTG 59.820 55.000 0.00 0.00 0.00 4.17
3568 5497 0.180406 GTGTTCTGGTGTCTGGTGGT 59.820 55.000 0.00 0.00 0.00 4.16
3569 5498 0.535102 GGTGTTCTGGTGTCTGGTGG 60.535 60.000 0.00 0.00 0.00 4.61
3570 5499 0.180171 TGGTGTTCTGGTGTCTGGTG 59.820 55.000 0.00 0.00 0.00 4.17
3571 5500 0.916086 TTGGTGTTCTGGTGTCTGGT 59.084 50.000 0.00 0.00 0.00 4.00
3572 5501 2.051334 TTTGGTGTTCTGGTGTCTGG 57.949 50.000 0.00 0.00 0.00 3.86
3573 5502 3.278574 TCTTTTGGTGTTCTGGTGTCTG 58.721 45.455 0.00 0.00 0.00 3.51
3574 5503 3.644966 TCTTTTGGTGTTCTGGTGTCT 57.355 42.857 0.00 0.00 0.00 3.41
3575 5504 6.349363 GGATTATCTTTTGGTGTTCTGGTGTC 60.349 42.308 0.00 0.00 0.00 3.67
3576 5505 5.476945 GGATTATCTTTTGGTGTTCTGGTGT 59.523 40.000 0.00 0.00 0.00 4.16
3577 5506 5.391950 CGGATTATCTTTTGGTGTTCTGGTG 60.392 44.000 0.00 0.00 0.00 4.17
3578 5507 4.700213 CGGATTATCTTTTGGTGTTCTGGT 59.300 41.667 0.00 0.00 0.00 4.00
3579 5508 4.438744 GCGGATTATCTTTTGGTGTTCTGG 60.439 45.833 0.00 0.00 0.00 3.86
3580 5509 4.155826 TGCGGATTATCTTTTGGTGTTCTG 59.844 41.667 0.00 0.00 0.00 3.02
3581 5510 4.331968 TGCGGATTATCTTTTGGTGTTCT 58.668 39.130 0.00 0.00 0.00 3.01
3582 5511 4.695217 TGCGGATTATCTTTTGGTGTTC 57.305 40.909 0.00 0.00 0.00 3.18
3583 5512 4.279671 TGTTGCGGATTATCTTTTGGTGTT 59.720 37.500 0.00 0.00 0.00 3.32
3584 5513 3.823873 TGTTGCGGATTATCTTTTGGTGT 59.176 39.130 0.00 0.00 0.00 4.16
3585 5514 4.155826 TCTGTTGCGGATTATCTTTTGGTG 59.844 41.667 0.00 0.00 0.00 4.17
3586 5515 4.331968 TCTGTTGCGGATTATCTTTTGGT 58.668 39.130 0.00 0.00 0.00 3.67
3587 5516 4.635765 TCTCTGTTGCGGATTATCTTTTGG 59.364 41.667 0.00 0.00 0.00 3.28
3588 5517 5.801350 TCTCTGTTGCGGATTATCTTTTG 57.199 39.130 0.00 0.00 0.00 2.44
3589 5518 6.817765 TTTCTCTGTTGCGGATTATCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
3590 5519 6.678900 GCATTTCTCTGTTGCGGATTATCTTT 60.679 38.462 0.00 0.00 0.00 2.52
3591 5520 5.220931 GCATTTCTCTGTTGCGGATTATCTT 60.221 40.000 0.00 0.00 0.00 2.40
3592 5521 4.274459 GCATTTCTCTGTTGCGGATTATCT 59.726 41.667 0.00 0.00 0.00 1.98
3593 5522 4.035558 TGCATTTCTCTGTTGCGGATTATC 59.964 41.667 0.00 0.00 39.23 1.75
3594 5523 3.947196 TGCATTTCTCTGTTGCGGATTAT 59.053 39.130 0.00 0.00 39.23 1.28
3595 5524 3.342719 TGCATTTCTCTGTTGCGGATTA 58.657 40.909 0.00 0.00 39.23 1.75
3596 5525 2.161855 TGCATTTCTCTGTTGCGGATT 58.838 42.857 0.00 0.00 39.23 3.01
3597 5526 1.825090 TGCATTTCTCTGTTGCGGAT 58.175 45.000 0.00 0.00 39.23 4.18
3598 5527 1.469703 CATGCATTTCTCTGTTGCGGA 59.530 47.619 0.00 0.00 39.23 5.54
3599 5528 1.469703 TCATGCATTTCTCTGTTGCGG 59.530 47.619 0.00 0.00 39.23 5.69
3600 5529 2.161012 AGTCATGCATTTCTCTGTTGCG 59.839 45.455 0.00 0.00 39.23 4.85
3601 5530 3.189910 TGAGTCATGCATTTCTCTGTTGC 59.810 43.478 21.11 0.00 36.91 4.17
3602 5531 4.142665 CCTGAGTCATGCATTTCTCTGTTG 60.143 45.833 21.11 12.43 0.00 3.33
3603 5532 4.008330 CCTGAGTCATGCATTTCTCTGTT 58.992 43.478 21.11 0.00 0.00 3.16
3604 5533 3.262660 TCCTGAGTCATGCATTTCTCTGT 59.737 43.478 21.11 0.00 0.00 3.41
3605 5534 3.870274 TCCTGAGTCATGCATTTCTCTG 58.130 45.455 21.11 20.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.