Multiple sequence alignment - TraesCS6D01G259200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G259200 chr6D 100.000 2402 0 0 1 2402 365448697 365451098 0.000000e+00 4436.0
1 TraesCS6D01G259200 chr6D 88.268 1432 131 23 431 1832 365596272 365597696 0.000000e+00 1679.0
2 TraesCS6D01G259200 chr6D 79.865 1038 153 33 390 1403 436343884 436344889 0.000000e+00 708.0
3 TraesCS6D01G259200 chr6D 77.325 613 77 27 1483 2070 365708821 365709396 3.000000e-79 305.0
4 TraesCS6D01G259200 chr6D 96.795 156 5 0 1 156 456280632 456280477 6.590000e-66 261.0
5 TraesCS6D01G259200 chr6D 94.231 156 8 1 1 156 38361950 38361796 1.110000e-58 237.0
6 TraesCS6D01G259200 chr6D 88.024 167 7 3 1823 1989 365598411 365598564 4.080000e-43 185.0
7 TraesCS6D01G259200 chr6A 88.995 1781 153 28 317 2070 506485121 506486885 0.000000e+00 2163.0
8 TraesCS6D01G259200 chr6A 83.283 1657 198 49 393 1992 506489652 506491286 0.000000e+00 1452.0
9 TraesCS6D01G259200 chr6A 85.278 720 85 16 698 1403 506507393 506508105 0.000000e+00 723.0
10 TraesCS6D01G259200 chr6A 93.590 156 8 1 1 156 133796850 133796697 5.160000e-57 231.0
11 TraesCS6D01G259200 chr6A 87.619 105 11 2 219 321 506421553 506421657 1.170000e-23 121.0
12 TraesCS6D01G259200 chr6B 90.756 1482 94 22 410 1853 550211054 550212530 0.000000e+00 1938.0
13 TraesCS6D01G259200 chr6B 82.345 1535 172 48 585 2063 550269954 550271445 0.000000e+00 1242.0
14 TraesCS6D01G259200 chr6B 80.707 1047 152 33 390 1404 659588515 659589543 0.000000e+00 769.0
15 TraesCS6D01G259200 chr6B 81.497 962 140 27 463 1403 550273039 550273983 0.000000e+00 756.0
16 TraesCS6D01G259200 chr6B 91.154 260 19 3 165 421 550210782 550211040 1.370000e-92 350.0
17 TraesCS6D01G259200 chrUn 96.795 156 5 0 1 156 45985173 45985328 6.590000e-66 261.0
18 TraesCS6D01G259200 chr1B 96.154 156 6 0 1 156 291967906 291967751 3.060000e-64 255.0
19 TraesCS6D01G259200 chr1B 94.667 150 7 1 1 150 563682232 563682380 5.160000e-57 231.0
20 TraesCS6D01G259200 chr3A 94.872 156 7 1 1 156 108032154 108032000 2.390000e-60 243.0
21 TraesCS6D01G259200 chr3A 84.302 172 18 6 2187 2351 743689582 743689751 2.470000e-35 159.0
22 TraesCS6D01G259200 chr2A 94.872 156 7 1 1 156 488003590 488003436 2.390000e-60 243.0
23 TraesCS6D01G259200 chr2B 94.231 156 9 0 1 156 31581398 31581553 3.090000e-59 239.0
24 TraesCS6D01G259200 chr5B 100.000 28 0 0 2187 2214 446568117 446568144 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G259200 chr6D 365448697 365451098 2401 False 4436.0 4436 100.000 1 2402 1 chr6D.!!$F1 2401
1 TraesCS6D01G259200 chr6D 365596272 365598564 2292 False 932.0 1679 88.146 431 1989 2 chr6D.!!$F4 1558
2 TraesCS6D01G259200 chr6D 436343884 436344889 1005 False 708.0 708 79.865 390 1403 1 chr6D.!!$F3 1013
3 TraesCS6D01G259200 chr6D 365708821 365709396 575 False 305.0 305 77.325 1483 2070 1 chr6D.!!$F2 587
4 TraesCS6D01G259200 chr6A 506485121 506491286 6165 False 1807.5 2163 86.139 317 2070 2 chr6A.!!$F3 1753
5 TraesCS6D01G259200 chr6A 506507393 506508105 712 False 723.0 723 85.278 698 1403 1 chr6A.!!$F2 705
6 TraesCS6D01G259200 chr6B 550210782 550212530 1748 False 1144.0 1938 90.955 165 1853 2 chr6B.!!$F2 1688
7 TraesCS6D01G259200 chr6B 550269954 550273983 4029 False 999.0 1242 81.921 463 2063 2 chr6B.!!$F3 1600
8 TraesCS6D01G259200 chr6B 659588515 659589543 1028 False 769.0 769 80.707 390 1404 1 chr6B.!!$F1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 550 0.036388 TGTGAGGAAGGACGGCATTC 60.036 55.0 7.23 7.23 34.22 2.67 F
932 1017 0.250234 ACAAGCGCATCCTTCAGCTA 59.750 50.0 11.47 0.00 39.25 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 9157 0.245266 TCAACTCGGATTACTGCGCA 59.755 50.0 10.98 10.98 35.99 6.09 R
2264 10827 0.821517 ACCACACGAATCTCCGCATA 59.178 50.0 0.00 0.00 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.682787 TGTATGACTTTGCTATCTGTCGG 58.317 43.478 0.00 0.00 32.64 4.79
24 25 2.010145 TGACTTTGCTATCTGTCGGC 57.990 50.000 0.00 0.00 32.64 5.54
25 26 0.924090 GACTTTGCTATCTGTCGGCG 59.076 55.000 0.00 0.00 0.00 6.46
26 27 0.246635 ACTTTGCTATCTGTCGGCGT 59.753 50.000 6.85 0.00 0.00 5.68
27 28 0.647410 CTTTGCTATCTGTCGGCGTG 59.353 55.000 6.85 0.00 0.00 5.34
28 29 0.037697 TTTGCTATCTGTCGGCGTGT 60.038 50.000 6.85 0.00 0.00 4.49
29 30 0.037697 TTGCTATCTGTCGGCGTGTT 60.038 50.000 6.85 0.00 0.00 3.32
30 31 0.037697 TGCTATCTGTCGGCGTGTTT 60.038 50.000 6.85 0.00 0.00 2.83
31 32 1.076332 GCTATCTGTCGGCGTGTTTT 58.924 50.000 6.85 0.00 0.00 2.43
32 33 1.060698 GCTATCTGTCGGCGTGTTTTC 59.939 52.381 6.85 0.00 0.00 2.29
33 34 1.320555 CTATCTGTCGGCGTGTTTTCG 59.679 52.381 6.85 0.00 0.00 3.46
34 35 0.599204 ATCTGTCGGCGTGTTTTCGT 60.599 50.000 6.85 0.00 0.00 3.85
35 36 1.083657 CTGTCGGCGTGTTTTCGTG 60.084 57.895 6.85 0.00 0.00 4.35
36 37 1.758319 CTGTCGGCGTGTTTTCGTGT 61.758 55.000 6.85 0.00 0.00 4.49
37 38 1.367195 GTCGGCGTGTTTTCGTGTG 60.367 57.895 6.85 0.00 0.00 3.82
38 39 2.720750 CGGCGTGTTTTCGTGTGC 60.721 61.111 0.00 0.00 0.00 4.57
39 40 2.720750 GGCGTGTTTTCGTGTGCG 60.721 61.111 0.00 0.00 39.92 5.34
40 41 2.022207 GCGTGTTTTCGTGTGCGT 59.978 55.556 0.00 0.00 39.49 5.24
41 42 2.276123 GCGTGTTTTCGTGTGCGTG 61.276 57.895 0.00 0.00 39.49 5.34
42 43 2.276123 CGTGTTTTCGTGTGCGTGC 61.276 57.895 0.00 0.00 39.49 5.34
43 44 2.022069 TGTTTTCGTGTGCGTGCG 59.978 55.556 0.00 0.00 39.49 5.34
44 45 2.022207 GTTTTCGTGTGCGTGCGT 59.978 55.556 0.00 0.00 39.49 5.24
45 46 1.581657 GTTTTCGTGTGCGTGCGTT 60.582 52.632 0.00 0.00 39.49 4.84
46 47 1.581402 TTTTCGTGTGCGTGCGTTG 60.581 52.632 0.00 0.00 39.49 4.10
47 48 2.904747 TTTTCGTGTGCGTGCGTTGG 62.905 55.000 0.00 0.00 39.49 3.77
49 50 4.936248 CGTGTGCGTGCGTTGGTG 62.936 66.667 0.00 0.00 0.00 4.17
50 51 3.871574 GTGTGCGTGCGTTGGTGT 61.872 61.111 0.00 0.00 0.00 4.16
51 52 3.128188 TGTGCGTGCGTTGGTGTT 61.128 55.556 0.00 0.00 0.00 3.32
52 53 2.650602 GTGCGTGCGTTGGTGTTG 60.651 61.111 0.00 0.00 0.00 3.33
53 54 3.882013 TGCGTGCGTTGGTGTTGG 61.882 61.111 0.00 0.00 0.00 3.77
55 56 3.582120 CGTGCGTTGGTGTTGGCT 61.582 61.111 0.00 0.00 0.00 4.75
56 57 2.026014 GTGCGTTGGTGTTGGCTG 59.974 61.111 0.00 0.00 0.00 4.85
57 58 2.439338 TGCGTTGGTGTTGGCTGT 60.439 55.556 0.00 0.00 0.00 4.40
58 59 2.026014 GCGTTGGTGTTGGCTGTG 59.974 61.111 0.00 0.00 0.00 3.66
59 60 2.770589 GCGTTGGTGTTGGCTGTGT 61.771 57.895 0.00 0.00 0.00 3.72
60 61 1.063972 CGTTGGTGTTGGCTGTGTG 59.936 57.895 0.00 0.00 0.00 3.82
61 62 1.226945 GTTGGTGTTGGCTGTGTGC 60.227 57.895 0.00 0.00 41.94 4.57
62 63 1.680314 TTGGTGTTGGCTGTGTGCA 60.680 52.632 0.00 0.00 45.15 4.57
63 64 1.042003 TTGGTGTTGGCTGTGTGCAT 61.042 50.000 0.00 0.00 45.15 3.96
64 65 1.286880 GGTGTTGGCTGTGTGCATC 59.713 57.895 0.00 0.00 45.15 3.91
65 66 1.286880 GTGTTGGCTGTGTGCATCC 59.713 57.895 0.00 0.00 45.15 3.51
66 67 1.151221 TGTTGGCTGTGTGCATCCT 59.849 52.632 0.00 0.00 45.15 3.24
67 68 0.399833 TGTTGGCTGTGTGCATCCTA 59.600 50.000 0.00 0.00 45.15 2.94
68 69 1.089920 GTTGGCTGTGTGCATCCTAG 58.910 55.000 0.00 0.00 45.15 3.02
69 70 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
70 71 1.222936 GGCTGTGTGCATCCTAGCT 59.777 57.895 12.70 0.00 45.15 3.32
71 72 0.465705 GGCTGTGTGCATCCTAGCTA 59.534 55.000 12.70 0.00 45.15 3.32
72 73 1.071385 GGCTGTGTGCATCCTAGCTAT 59.929 52.381 12.70 0.00 45.15 2.97
73 74 2.141517 GCTGTGTGCATCCTAGCTATG 58.858 52.381 0.00 0.00 42.31 2.23
81 82 3.591196 CATCCTAGCTATGCAGAGACC 57.409 52.381 13.69 0.00 0.00 3.85
82 83 1.610363 TCCTAGCTATGCAGAGACCG 58.390 55.000 13.69 0.00 0.00 4.79
83 84 0.600557 CCTAGCTATGCAGAGACCGG 59.399 60.000 13.69 0.00 0.00 5.28
84 85 0.600557 CTAGCTATGCAGAGACCGGG 59.399 60.000 13.69 0.00 0.00 5.73
85 86 0.106167 TAGCTATGCAGAGACCGGGT 60.106 55.000 13.69 0.00 0.00 5.28
86 87 1.227380 GCTATGCAGAGACCGGGTG 60.227 63.158 13.69 0.00 0.00 4.61
87 88 1.961180 GCTATGCAGAGACCGGGTGT 61.961 60.000 13.69 0.00 0.00 4.16
88 89 0.179100 CTATGCAGAGACCGGGTGTG 60.179 60.000 3.30 2.11 0.00 3.82
89 90 0.902984 TATGCAGAGACCGGGTGTGT 60.903 55.000 3.30 0.00 0.00 3.72
90 91 2.357517 GCAGAGACCGGGTGTGTG 60.358 66.667 16.08 16.08 0.00 3.82
91 92 2.357517 CAGAGACCGGGTGTGTGC 60.358 66.667 3.30 0.00 0.00 4.57
92 93 2.524394 AGAGACCGGGTGTGTGCT 60.524 61.111 3.30 0.00 0.00 4.40
93 94 2.048127 GAGACCGGGTGTGTGCTC 60.048 66.667 3.30 0.00 0.00 4.26
94 95 2.842462 AGACCGGGTGTGTGCTCA 60.842 61.111 3.30 0.00 0.00 4.26
95 96 2.172483 GAGACCGGGTGTGTGCTCAT 62.172 60.000 3.30 0.00 0.00 2.90
96 97 1.302511 GACCGGGTGTGTGCTCATT 60.303 57.895 3.30 0.00 0.00 2.57
97 98 1.577328 GACCGGGTGTGTGCTCATTG 61.577 60.000 3.30 0.00 0.00 2.82
98 99 1.600636 CCGGGTGTGTGCTCATTGT 60.601 57.895 0.00 0.00 0.00 2.71
99 100 1.575922 CGGGTGTGTGCTCATTGTG 59.424 57.895 0.00 0.00 0.00 3.33
100 101 1.165907 CGGGTGTGTGCTCATTGTGT 61.166 55.000 0.00 0.00 0.00 3.72
101 102 1.032014 GGGTGTGTGCTCATTGTGTT 58.968 50.000 0.00 0.00 0.00 3.32
102 103 1.408702 GGGTGTGTGCTCATTGTGTTT 59.591 47.619 0.00 0.00 0.00 2.83
103 104 2.462889 GGTGTGTGCTCATTGTGTTTG 58.537 47.619 0.00 0.00 0.00 2.93
104 105 2.159254 GGTGTGTGCTCATTGTGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
105 106 3.066064 GGTGTGTGCTCATTGTGTTTGTA 59.934 43.478 0.00 0.00 0.00 2.41
106 107 4.261572 GGTGTGTGCTCATTGTGTTTGTAT 60.262 41.667 0.00 0.00 0.00 2.29
107 108 4.911610 GTGTGTGCTCATTGTGTTTGTATC 59.088 41.667 0.00 0.00 0.00 2.24
108 109 4.821260 TGTGTGCTCATTGTGTTTGTATCT 59.179 37.500 0.00 0.00 0.00 1.98
109 110 5.299028 TGTGTGCTCATTGTGTTTGTATCTT 59.701 36.000 0.00 0.00 0.00 2.40
110 111 6.183360 TGTGTGCTCATTGTGTTTGTATCTTT 60.183 34.615 0.00 0.00 0.00 2.52
111 112 6.697019 GTGTGCTCATTGTGTTTGTATCTTTT 59.303 34.615 0.00 0.00 0.00 2.27
112 113 7.222611 GTGTGCTCATTGTGTTTGTATCTTTTT 59.777 33.333 0.00 0.00 0.00 1.94
113 114 7.222417 TGTGCTCATTGTGTTTGTATCTTTTTG 59.778 33.333 0.00 0.00 0.00 2.44
114 115 7.434897 GTGCTCATTGTGTTTGTATCTTTTTGA 59.565 33.333 0.00 0.00 0.00 2.69
115 116 8.143193 TGCTCATTGTGTTTGTATCTTTTTGAT 58.857 29.630 0.00 0.00 39.11 2.57
116 117 8.430063 GCTCATTGTGTTTGTATCTTTTTGATG 58.570 33.333 0.00 0.00 36.65 3.07
117 118 8.296799 TCATTGTGTTTGTATCTTTTTGATGC 57.703 30.769 0.00 0.00 38.12 3.91
118 119 8.143193 TCATTGTGTTTGTATCTTTTTGATGCT 58.857 29.630 0.00 0.00 38.39 3.79
119 120 7.928908 TTGTGTTTGTATCTTTTTGATGCTC 57.071 32.000 0.00 0.00 38.39 4.26
120 121 6.446318 TGTGTTTGTATCTTTTTGATGCTCC 58.554 36.000 0.00 0.00 38.39 4.70
121 122 6.040278 TGTGTTTGTATCTTTTTGATGCTCCA 59.960 34.615 0.00 0.00 38.39 3.86
122 123 7.092716 GTGTTTGTATCTTTTTGATGCTCCAT 58.907 34.615 0.00 0.00 38.39 3.41
123 124 7.599998 GTGTTTGTATCTTTTTGATGCTCCATT 59.400 33.333 0.00 0.00 38.39 3.16
124 125 8.149647 TGTTTGTATCTTTTTGATGCTCCATTT 58.850 29.630 0.00 0.00 38.39 2.32
125 126 8.992073 GTTTGTATCTTTTTGATGCTCCATTTT 58.008 29.630 0.00 0.00 38.39 1.82
126 127 8.537049 TTGTATCTTTTTGATGCTCCATTTTG 57.463 30.769 0.00 0.00 38.39 2.44
127 128 7.894708 TGTATCTTTTTGATGCTCCATTTTGA 58.105 30.769 0.00 0.00 38.39 2.69
128 129 8.030692 TGTATCTTTTTGATGCTCCATTTTGAG 58.969 33.333 0.00 0.00 38.39 3.02
129 130 6.409524 TCTTTTTGATGCTCCATTTTGAGT 57.590 33.333 0.00 0.00 34.74 3.41
130 131 6.449698 TCTTTTTGATGCTCCATTTTGAGTC 58.550 36.000 0.00 0.00 34.74 3.36
131 132 5.787953 TTTTGATGCTCCATTTTGAGTCA 57.212 34.783 0.00 0.00 34.74 3.41
132 133 5.787953 TTTGATGCTCCATTTTGAGTCAA 57.212 34.783 0.08 0.08 34.74 3.18
133 134 5.988310 TTGATGCTCCATTTTGAGTCAAT 57.012 34.783 6.36 0.00 34.74 2.57
134 135 7.465353 TTTGATGCTCCATTTTGAGTCAATA 57.535 32.000 6.36 1.98 31.44 1.90
135 136 7.465353 TTGATGCTCCATTTTGAGTCAATAA 57.535 32.000 6.36 4.84 34.74 1.40
136 137 7.465353 TGATGCTCCATTTTGAGTCAATAAA 57.535 32.000 6.36 0.00 34.74 1.40
137 138 7.894708 TGATGCTCCATTTTGAGTCAATAAAA 58.105 30.769 6.36 0.00 34.74 1.52
138 139 8.533657 TGATGCTCCATTTTGAGTCAATAAAAT 58.466 29.630 6.36 0.85 37.06 1.82
139 140 8.937634 ATGCTCCATTTTGAGTCAATAAAATC 57.062 30.769 6.36 0.00 35.07 2.17
140 141 7.322664 TGCTCCATTTTGAGTCAATAAAATCC 58.677 34.615 6.36 0.00 35.07 3.01
141 142 7.039152 TGCTCCATTTTGAGTCAATAAAATCCA 60.039 33.333 6.36 0.00 35.07 3.41
142 143 7.276438 GCTCCATTTTGAGTCAATAAAATCCAC 59.724 37.037 6.36 0.00 35.07 4.02
143 144 7.610865 TCCATTTTGAGTCAATAAAATCCACC 58.389 34.615 6.36 0.00 35.07 4.61
144 145 6.818142 CCATTTTGAGTCAATAAAATCCACCC 59.182 38.462 6.36 0.00 35.07 4.61
145 146 7.310609 CCATTTTGAGTCAATAAAATCCACCCT 60.311 37.037 6.36 0.00 35.07 4.34
146 147 7.610580 TTTTGAGTCAATAAAATCCACCCTT 57.389 32.000 6.36 0.00 0.00 3.95
147 148 7.610580 TTTGAGTCAATAAAATCCACCCTTT 57.389 32.000 6.36 0.00 0.00 3.11
148 149 8.713708 TTTGAGTCAATAAAATCCACCCTTTA 57.286 30.769 6.36 0.00 0.00 1.85
149 150 8.893563 TTGAGTCAATAAAATCCACCCTTTAT 57.106 30.769 0.08 0.00 30.70 1.40
150 151 8.519799 TGAGTCAATAAAATCCACCCTTTATC 57.480 34.615 0.00 0.00 29.50 1.75
151 152 7.282224 TGAGTCAATAAAATCCACCCTTTATCG 59.718 37.037 0.00 0.00 29.50 2.92
152 153 7.343357 AGTCAATAAAATCCACCCTTTATCGA 58.657 34.615 0.00 0.00 29.50 3.59
153 154 7.832187 AGTCAATAAAATCCACCCTTTATCGAA 59.168 33.333 0.00 0.00 29.50 3.71
154 155 8.463607 GTCAATAAAATCCACCCTTTATCGAAA 58.536 33.333 0.00 0.00 29.50 3.46
155 156 9.026121 TCAATAAAATCCACCCTTTATCGAAAA 57.974 29.630 0.00 0.00 29.50 2.29
156 157 9.816354 CAATAAAATCCACCCTTTATCGAAAAT 57.184 29.630 0.00 0.00 29.50 1.82
163 164 8.897872 TCCACCCTTTATCGAAAATATTAGAC 57.102 34.615 0.00 0.00 0.00 2.59
166 167 8.774586 CACCCTTTATCGAAAATATTAGACAGG 58.225 37.037 0.00 0.00 0.00 4.00
182 183 3.073062 AGACAGGTCAGTAAACAATGCCT 59.927 43.478 1.84 0.00 0.00 4.75
188 189 7.120726 ACAGGTCAGTAAACAATGCCTAAATAC 59.879 37.037 0.00 0.00 0.00 1.89
192 193 7.120726 GTCAGTAAACAATGCCTAAATACCAGT 59.879 37.037 0.00 0.00 0.00 4.00
198 199 3.364460 TGCCTAAATACCAGTGCATGT 57.636 42.857 0.00 0.00 0.00 3.21
224 225 1.753649 CCATCGAGGTGACATCTGACT 59.246 52.381 0.00 0.00 0.00 3.41
237 238 7.278868 GGTGACATCTGACTAAAAATAGGAGTG 59.721 40.741 0.00 0.00 0.00 3.51
275 277 6.435430 TGGTTCTCCAAACATTATTCATCG 57.565 37.500 0.00 0.00 41.25 3.84
296 298 7.753580 TCATCGGTGTTTATATGTATCTTAGCG 59.246 37.037 0.00 0.00 0.00 4.26
315 317 2.124277 GGTTTTCCGTTATCCCAGCT 57.876 50.000 0.00 0.00 0.00 4.24
349 351 0.180171 CCACGGGTGATGCCTTGATA 59.820 55.000 0.00 0.00 37.43 2.15
387 389 1.299468 CGATCAGAGGGTGTAGCGC 60.299 63.158 0.00 0.00 0.00 5.92
508 550 0.036388 TGTGAGGAAGGACGGCATTC 60.036 55.000 7.23 7.23 34.22 2.67
633 676 3.434984 GCCATTCTCTGTTCTCAACACTC 59.565 47.826 0.00 0.00 36.25 3.51
677 722 2.270352 TGCACCCGGATTATGGATTC 57.730 50.000 0.73 0.00 0.00 2.52
684 729 4.104738 ACCCGGATTATGGATTCATCAACT 59.895 41.667 0.73 0.00 34.96 3.16
740 789 9.621629 CCATATGAACATTGTACCTAAAACCTA 57.378 33.333 3.65 0.00 0.00 3.08
810 863 5.691754 GGCGTCATCTTGAAGTCAAATTTTT 59.308 36.000 0.00 0.00 35.15 1.94
841 895 2.169352 TCAACCTCAAGAGAGCATAGCC 59.831 50.000 0.00 0.00 40.68 3.93
855 912 1.562672 ATAGCCACCCCGCTGACTTT 61.563 55.000 0.00 0.00 40.08 2.66
919 1004 0.817634 TTCCCTCCACACAACAAGCG 60.818 55.000 0.00 0.00 0.00 4.68
932 1017 0.250234 ACAAGCGCATCCTTCAGCTA 59.750 50.000 11.47 0.00 39.25 3.32
970 1063 0.802494 CGAGCCAATAAGCAAACCGT 59.198 50.000 0.00 0.00 34.23 4.83
1272 9037 4.043200 GGCGGCTGCAACAAGGAC 62.043 66.667 21.31 0.00 45.35 3.85
1338 9103 3.386078 TGCTCTCTGACAAGAAGAACTGT 59.614 43.478 0.00 0.00 30.03 3.55
1392 9157 2.873133 GCTACGGCTTCTGTGACTAT 57.127 50.000 0.00 0.00 35.22 2.12
1404 9169 2.797156 CTGTGACTATGCGCAGTAATCC 59.203 50.000 18.32 2.91 40.56 3.01
1410 9176 1.290203 ATGCGCAGTAATCCGAGTTG 58.710 50.000 18.32 0.00 0.00 3.16
1517 9304 2.071540 GCTACAGTTTCCCAACGTACC 58.928 52.381 0.00 0.00 38.03 3.34
1613 9414 4.922103 GCAGTGGTATCCGCTAGTAATAAC 59.078 45.833 1.43 0.00 43.13 1.89
1676 9479 4.729227 ACCCGTGAATCAAAACAAAACT 57.271 36.364 0.00 0.00 0.00 2.66
1691 9502 6.391227 AACAAAACTGATCAAATCCGAACT 57.609 33.333 0.00 0.00 0.00 3.01
1693 9504 6.438763 ACAAAACTGATCAAATCCGAACTTC 58.561 36.000 0.00 0.00 0.00 3.01
1775 9587 6.659824 ACCCATACTTTAATCGACATCCTTT 58.340 36.000 0.00 0.00 0.00 3.11
1962 10525 2.851195 CCCGCCTAAGCAATGTTAGAT 58.149 47.619 4.83 0.00 39.83 1.98
1968 10531 5.047847 GCCTAAGCAATGTTAGATGACGTA 58.952 41.667 0.00 0.00 39.53 3.57
1992 10555 2.983229 CAATCTCTGGAACACCCTCAG 58.017 52.381 0.00 0.00 35.38 3.35
1993 10556 2.568956 CAATCTCTGGAACACCCTCAGA 59.431 50.000 0.00 0.00 36.30 3.27
1994 10557 2.630889 TCTCTGGAACACCCTCAGAT 57.369 50.000 0.00 0.00 36.99 2.90
1995 10558 3.757947 TCTCTGGAACACCCTCAGATA 57.242 47.619 0.00 0.00 36.99 1.98
1996 10559 4.061131 TCTCTGGAACACCCTCAGATAA 57.939 45.455 0.00 0.00 36.99 1.75
1997 10560 3.769844 TCTCTGGAACACCCTCAGATAAC 59.230 47.826 0.00 0.00 36.99 1.89
1999 10562 1.553248 TGGAACACCCTCAGATAACCG 59.447 52.381 0.00 0.00 35.38 4.44
2002 10565 2.762535 ACACCCTCAGATAACCGTTG 57.237 50.000 0.00 0.00 0.00 4.10
2004 10567 0.981183 ACCCTCAGATAACCGTTGCA 59.019 50.000 0.00 0.00 0.00 4.08
2006 10569 1.369625 CCTCAGATAACCGTTGCACC 58.630 55.000 0.00 0.00 0.00 5.01
2035 10598 1.003580 GGGTGCCTCTCAGATTCACAA 59.996 52.381 8.26 0.00 0.00 3.33
2038 10601 3.128242 GGTGCCTCTCAGATTCACAAATG 59.872 47.826 8.26 0.00 0.00 2.32
2058 10621 7.714377 ACAAATGTTATCACTTGCAAATTCCAA 59.286 29.630 0.00 0.00 34.65 3.53
2118 10681 9.941325 AATAATTATTCTCCATTTGTTGCAACA 57.059 25.926 27.96 27.96 37.08 3.33
2119 10682 7.656707 AATTATTCTCCATTTGTTGCAACAC 57.343 32.000 31.17 6.69 38.92 3.32
2120 10683 4.669206 ATTCTCCATTTGTTGCAACACA 57.331 36.364 31.17 25.41 38.92 3.72
2121 10684 4.462508 TTCTCCATTTGTTGCAACACAA 57.537 36.364 31.17 25.18 38.92 3.33
2132 10695 8.484641 TTTGTTGCAACACAAATGATTTAAGA 57.515 26.923 31.17 9.19 40.88 2.10
2133 10696 7.462109 TGTTGCAACACAAATGATTTAAGAC 57.538 32.000 27.96 0.00 40.82 3.01
2134 10697 7.264221 TGTTGCAACACAAATGATTTAAGACT 58.736 30.769 27.96 0.00 40.82 3.24
2135 10698 7.763528 TGTTGCAACACAAATGATTTAAGACTT 59.236 29.630 27.96 0.00 40.82 3.01
2136 10699 9.243637 GTTGCAACACAAATGATTTAAGACTTA 57.756 29.630 24.52 0.00 40.82 2.24
2137 10700 9.979578 TTGCAACACAAATGATTTAAGACTTAT 57.020 25.926 0.00 0.00 34.56 1.73
2138 10701 9.979578 TGCAACACAAATGATTTAAGACTTATT 57.020 25.926 0.00 0.00 0.00 1.40
2161 10724 8.950208 ATTGTATTCACTAGGAAAGAAGTAGC 57.050 34.615 0.00 0.00 39.39 3.58
2162 10725 7.476540 TGTATTCACTAGGAAAGAAGTAGCA 57.523 36.000 0.00 0.00 39.39 3.49
2163 10726 8.079211 TGTATTCACTAGGAAAGAAGTAGCAT 57.921 34.615 0.00 0.00 39.39 3.79
2164 10727 8.540388 TGTATTCACTAGGAAAGAAGTAGCATT 58.460 33.333 0.00 0.00 39.39 3.56
2165 10728 9.036671 GTATTCACTAGGAAAGAAGTAGCATTC 57.963 37.037 0.00 0.00 39.39 2.67
2166 10729 6.859112 TCACTAGGAAAGAAGTAGCATTCT 57.141 37.500 0.00 0.00 41.31 2.40
2167 10730 7.956328 TCACTAGGAAAGAAGTAGCATTCTA 57.044 36.000 0.00 0.00 38.59 2.10
2168 10731 8.362464 TCACTAGGAAAGAAGTAGCATTCTAA 57.638 34.615 0.00 0.00 38.59 2.10
2169 10732 8.812972 TCACTAGGAAAGAAGTAGCATTCTAAA 58.187 33.333 0.00 0.00 38.59 1.85
2170 10733 9.436957 CACTAGGAAAGAAGTAGCATTCTAAAA 57.563 33.333 0.00 0.00 38.59 1.52
2178 10741 9.905713 AAGAAGTAGCATTCTAAAATATGTGGA 57.094 29.630 0.01 0.00 38.59 4.02
2179 10742 9.905713 AGAAGTAGCATTCTAAAATATGTGGAA 57.094 29.630 0.00 0.00 37.76 3.53
2182 10745 9.851686 AGTAGCATTCTAAAATATGTGGAATCA 57.148 29.630 0.00 0.00 0.00 2.57
2185 10748 9.807649 AGCATTCTAAAATATGTGGAATCAAAC 57.192 29.630 0.00 0.00 0.00 2.93
2186 10749 9.807649 GCATTCTAAAATATGTGGAATCAAACT 57.192 29.630 0.00 0.00 0.00 2.66
2228 10791 7.919690 GCTAAAGCACACATTTAGATATGTCA 58.080 34.615 9.11 0.00 40.95 3.58
2229 10792 8.562892 GCTAAAGCACACATTTAGATATGTCAT 58.437 33.333 9.11 0.00 40.95 3.06
2233 10796 9.618890 AAGCACACATTTAGATATGTCATAAGT 57.381 29.630 0.00 0.00 36.64 2.24
2250 10813 9.489084 TGTCATAAGTATTGCACATATAAGTCC 57.511 33.333 0.00 0.00 0.00 3.85
2251 10814 9.712305 GTCATAAGTATTGCACATATAAGTCCT 57.288 33.333 0.00 0.00 0.00 3.85
2255 10818 8.438676 AAGTATTGCACATATAAGTCCTTGTC 57.561 34.615 0.00 0.00 0.00 3.18
2256 10819 7.564793 AGTATTGCACATATAAGTCCTTGTCA 58.435 34.615 0.00 0.00 0.00 3.58
2257 10820 8.213679 AGTATTGCACATATAAGTCCTTGTCAT 58.786 33.333 0.00 0.00 0.00 3.06
2258 10821 7.886629 ATTGCACATATAAGTCCTTGTCATT 57.113 32.000 0.00 0.00 0.00 2.57
2259 10822 6.682423 TGCACATATAAGTCCTTGTCATTG 57.318 37.500 0.00 0.00 0.00 2.82
2260 10823 5.589855 TGCACATATAAGTCCTTGTCATTGG 59.410 40.000 0.00 0.00 0.00 3.16
2261 10824 5.590259 GCACATATAAGTCCTTGTCATTGGT 59.410 40.000 0.00 0.00 0.00 3.67
2262 10825 6.238484 GCACATATAAGTCCTTGTCATTGGTC 60.238 42.308 0.00 0.00 0.00 4.02
2263 10826 7.050377 CACATATAAGTCCTTGTCATTGGTCT 58.950 38.462 0.00 0.00 0.00 3.85
2264 10827 7.554118 CACATATAAGTCCTTGTCATTGGTCTT 59.446 37.037 8.86 8.86 36.18 3.01
2265 10828 8.768397 ACATATAAGTCCTTGTCATTGGTCTTA 58.232 33.333 11.46 11.46 37.96 2.10
2266 10829 9.784531 CATATAAGTCCTTGTCATTGGTCTTAT 57.215 33.333 18.84 18.84 42.63 1.73
2267 10830 9.784531 ATATAAGTCCTTGTCATTGGTCTTATG 57.215 33.333 21.21 0.00 41.32 1.90
2268 10831 4.265073 AGTCCTTGTCATTGGTCTTATGC 58.735 43.478 0.00 0.00 0.00 3.14
2269 10832 3.063997 GTCCTTGTCATTGGTCTTATGCG 59.936 47.826 0.00 0.00 0.00 4.73
2270 10833 2.355756 CCTTGTCATTGGTCTTATGCGG 59.644 50.000 0.00 0.00 0.00 5.69
2271 10834 3.270027 CTTGTCATTGGTCTTATGCGGA 58.730 45.455 0.00 0.00 0.00 5.54
2272 10835 2.905075 TGTCATTGGTCTTATGCGGAG 58.095 47.619 0.00 0.00 0.00 4.63
2273 10836 2.499693 TGTCATTGGTCTTATGCGGAGA 59.500 45.455 0.00 0.00 0.00 3.71
2274 10837 3.134623 TGTCATTGGTCTTATGCGGAGAT 59.865 43.478 0.00 0.00 0.00 2.75
2275 10838 4.130118 GTCATTGGTCTTATGCGGAGATT 58.870 43.478 0.00 0.00 0.00 2.40
2276 10839 4.212214 GTCATTGGTCTTATGCGGAGATTC 59.788 45.833 0.00 0.00 0.00 2.52
2277 10840 2.509052 TGGTCTTATGCGGAGATTCG 57.491 50.000 0.00 0.00 0.00 3.34
2278 10841 1.754803 TGGTCTTATGCGGAGATTCGT 59.245 47.619 0.00 0.00 0.00 3.85
2279 10842 2.128035 GGTCTTATGCGGAGATTCGTG 58.872 52.381 0.00 0.00 0.00 4.35
2280 10843 2.481449 GGTCTTATGCGGAGATTCGTGT 60.481 50.000 0.00 0.00 0.00 4.49
2281 10844 2.535984 GTCTTATGCGGAGATTCGTGTG 59.464 50.000 0.00 0.00 0.00 3.82
2282 10845 1.860950 CTTATGCGGAGATTCGTGTGG 59.139 52.381 0.00 0.00 0.00 4.17
2283 10846 0.821517 TATGCGGAGATTCGTGTGGT 59.178 50.000 0.00 0.00 0.00 4.16
2284 10847 0.821517 ATGCGGAGATTCGTGTGGTA 59.178 50.000 0.00 0.00 0.00 3.25
2285 10848 0.821517 TGCGGAGATTCGTGTGGTAT 59.178 50.000 0.00 0.00 0.00 2.73
2286 10849 1.206132 TGCGGAGATTCGTGTGGTATT 59.794 47.619 0.00 0.00 0.00 1.89
2287 10850 2.277084 GCGGAGATTCGTGTGGTATTT 58.723 47.619 0.00 0.00 0.00 1.40
2288 10851 2.676342 GCGGAGATTCGTGTGGTATTTT 59.324 45.455 0.00 0.00 0.00 1.82
2289 10852 3.126343 GCGGAGATTCGTGTGGTATTTTT 59.874 43.478 0.00 0.00 0.00 1.94
2311 10874 6.751514 TTTTCCCTTTTTCTTTTCCTTTGC 57.248 33.333 0.00 0.00 0.00 3.68
2312 10875 5.692115 TTCCCTTTTTCTTTTCCTTTGCT 57.308 34.783 0.00 0.00 0.00 3.91
2313 10876 5.692115 TCCCTTTTTCTTTTCCTTTGCTT 57.308 34.783 0.00 0.00 0.00 3.91
2314 10877 6.800072 TCCCTTTTTCTTTTCCTTTGCTTA 57.200 33.333 0.00 0.00 0.00 3.09
2315 10878 7.189079 TCCCTTTTTCTTTTCCTTTGCTTAA 57.811 32.000 0.00 0.00 0.00 1.85
2316 10879 7.801104 TCCCTTTTTCTTTTCCTTTGCTTAAT 58.199 30.769 0.00 0.00 0.00 1.40
2317 10880 8.271458 TCCCTTTTTCTTTTCCTTTGCTTAATT 58.729 29.630 0.00 0.00 0.00 1.40
2318 10881 8.344831 CCCTTTTTCTTTTCCTTTGCTTAATTG 58.655 33.333 0.00 0.00 0.00 2.32
2319 10882 9.108284 CCTTTTTCTTTTCCTTTGCTTAATTGA 57.892 29.630 0.00 0.00 0.00 2.57
2323 10886 9.829507 TTTCTTTTCCTTTGCTTAATTGATTCA 57.170 25.926 0.00 0.00 0.00 2.57
2324 10887 8.816640 TCTTTTCCTTTGCTTAATTGATTCAC 57.183 30.769 0.00 0.00 0.00 3.18
2325 10888 8.641541 TCTTTTCCTTTGCTTAATTGATTCACT 58.358 29.630 0.00 0.00 0.00 3.41
2326 10889 9.264719 CTTTTCCTTTGCTTAATTGATTCACTT 57.735 29.630 0.00 0.00 0.00 3.16
2328 10891 9.691362 TTTCCTTTGCTTAATTGATTCACTTAC 57.309 29.630 0.00 0.00 0.00 2.34
2329 10892 8.402798 TCCTTTGCTTAATTGATTCACTTACA 57.597 30.769 0.00 0.00 0.00 2.41
2330 10893 9.023962 TCCTTTGCTTAATTGATTCACTTACAT 57.976 29.630 0.00 0.00 0.00 2.29
2331 10894 9.079833 CCTTTGCTTAATTGATTCACTTACATG 57.920 33.333 0.00 0.00 0.00 3.21
2332 10895 9.630098 CTTTGCTTAATTGATTCACTTACATGT 57.370 29.630 2.69 2.69 0.00 3.21
2333 10896 8.969121 TTGCTTAATTGATTCACTTACATGTG 57.031 30.769 9.11 0.00 39.15 3.21
2334 10897 7.028962 TGCTTAATTGATTCACTTACATGTGC 58.971 34.615 9.11 0.00 37.81 4.57
2335 10898 7.028962 GCTTAATTGATTCACTTACATGTGCA 58.971 34.615 9.11 0.00 37.81 4.57
2336 10899 7.541783 GCTTAATTGATTCACTTACATGTGCAA 59.458 33.333 9.11 0.00 37.81 4.08
2337 10900 9.577110 CTTAATTGATTCACTTACATGTGCAAT 57.423 29.630 9.11 0.00 37.81 3.56
2340 10903 8.915871 ATTGATTCACTTACATGTGCAATAAC 57.084 30.769 9.11 0.00 37.81 1.89
2341 10904 7.686438 TGATTCACTTACATGTGCAATAACT 57.314 32.000 9.11 0.00 37.81 2.24
2342 10905 8.785329 TGATTCACTTACATGTGCAATAACTA 57.215 30.769 9.11 0.00 37.81 2.24
2343 10906 8.664798 TGATTCACTTACATGTGCAATAACTAC 58.335 33.333 9.11 0.00 37.81 2.73
2344 10907 6.641176 TCACTTACATGTGCAATAACTACG 57.359 37.500 9.11 0.00 37.81 3.51
2345 10908 5.579119 TCACTTACATGTGCAATAACTACGG 59.421 40.000 9.11 0.00 37.81 4.02
2346 10909 4.331717 ACTTACATGTGCAATAACTACGGC 59.668 41.667 9.11 0.00 0.00 5.68
2347 10910 2.705730 ACATGTGCAATAACTACGGCA 58.294 42.857 0.00 0.00 0.00 5.69
2355 10918 6.443934 TGCAATAACTACGGCACATAATTT 57.556 33.333 0.00 0.00 0.00 1.82
2356 10919 6.857956 TGCAATAACTACGGCACATAATTTT 58.142 32.000 0.00 0.00 0.00 1.82
2357 10920 7.316640 TGCAATAACTACGGCACATAATTTTT 58.683 30.769 0.00 0.00 0.00 1.94
2358 10921 7.274468 TGCAATAACTACGGCACATAATTTTTG 59.726 33.333 0.00 0.00 0.00 2.44
2359 10922 7.274686 GCAATAACTACGGCACATAATTTTTGT 59.725 33.333 0.00 0.00 0.00 2.83
2360 10923 9.776158 CAATAACTACGGCACATAATTTTTGTA 57.224 29.630 0.00 0.00 0.00 2.41
2361 10924 9.777575 AATAACTACGGCACATAATTTTTGTAC 57.222 29.630 0.00 0.00 0.00 2.90
2362 10925 6.804770 ACTACGGCACATAATTTTTGTACA 57.195 33.333 0.00 0.00 0.00 2.90
2363 10926 7.204496 ACTACGGCACATAATTTTTGTACAA 57.796 32.000 3.59 3.59 0.00 2.41
2364 10927 7.649973 ACTACGGCACATAATTTTTGTACAAA 58.350 30.769 17.01 17.01 0.00 2.83
2365 10928 8.301002 ACTACGGCACATAATTTTTGTACAAAT 58.699 29.630 21.17 9.73 0.00 2.32
2366 10929 9.776158 CTACGGCACATAATTTTTGTACAAATA 57.224 29.630 21.17 16.81 0.00 1.40
2367 10930 8.455598 ACGGCACATAATTTTTGTACAAATAC 57.544 30.769 21.17 3.80 0.00 1.89
2368 10931 8.301002 ACGGCACATAATTTTTGTACAAATACT 58.699 29.630 21.17 9.67 32.00 2.12
2369 10932 8.794406 CGGCACATAATTTTTGTACAAATACTC 58.206 33.333 21.17 4.97 32.00 2.59
2370 10933 9.083080 GGCACATAATTTTTGTACAAATACTCC 57.917 33.333 21.17 9.51 32.00 3.85
2371 10934 9.855021 GCACATAATTTTTGTACAAATACTCCT 57.145 29.630 21.17 6.51 32.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.109210 CCGACAGATAGCAAAGTCATACAA 58.891 41.667 0.00 0.00 0.00 2.41
1 2 4.682787 CCGACAGATAGCAAAGTCATACA 58.317 43.478 0.00 0.00 0.00 2.29
2 3 3.491267 GCCGACAGATAGCAAAGTCATAC 59.509 47.826 0.00 0.00 0.00 2.39
3 4 3.717707 GCCGACAGATAGCAAAGTCATA 58.282 45.455 0.00 0.00 0.00 2.15
4 5 2.555199 GCCGACAGATAGCAAAGTCAT 58.445 47.619 0.00 0.00 0.00 3.06
5 6 1.735700 CGCCGACAGATAGCAAAGTCA 60.736 52.381 0.00 0.00 0.00 3.41
6 7 0.924090 CGCCGACAGATAGCAAAGTC 59.076 55.000 0.00 0.00 0.00 3.01
7 8 0.246635 ACGCCGACAGATAGCAAAGT 59.753 50.000 0.00 0.00 0.00 2.66
8 9 0.647410 CACGCCGACAGATAGCAAAG 59.353 55.000 0.00 0.00 0.00 2.77
9 10 0.037697 ACACGCCGACAGATAGCAAA 60.038 50.000 0.00 0.00 0.00 3.68
10 11 0.037697 AACACGCCGACAGATAGCAA 60.038 50.000 0.00 0.00 0.00 3.91
11 12 0.037697 AAACACGCCGACAGATAGCA 60.038 50.000 0.00 0.00 0.00 3.49
12 13 1.060698 GAAAACACGCCGACAGATAGC 59.939 52.381 0.00 0.00 0.00 2.97
13 14 1.320555 CGAAAACACGCCGACAGATAG 59.679 52.381 0.00 0.00 0.00 2.08
14 15 1.336148 ACGAAAACACGCCGACAGATA 60.336 47.619 0.00 0.00 36.70 1.98
15 16 0.599204 ACGAAAACACGCCGACAGAT 60.599 50.000 0.00 0.00 36.70 2.90
16 17 1.227031 ACGAAAACACGCCGACAGA 60.227 52.632 0.00 0.00 36.70 3.41
17 18 1.083657 CACGAAAACACGCCGACAG 60.084 57.895 0.00 0.00 36.70 3.51
18 19 1.810441 ACACGAAAACACGCCGACA 60.810 52.632 0.00 0.00 36.70 4.35
19 20 1.367195 CACACGAAAACACGCCGAC 60.367 57.895 0.00 0.00 36.70 4.79
20 21 3.007516 CACACGAAAACACGCCGA 58.992 55.556 0.00 0.00 36.70 5.54
21 22 2.720750 GCACACGAAAACACGCCG 60.721 61.111 0.00 0.00 36.70 6.46
22 23 2.720750 CGCACACGAAAACACGCC 60.721 61.111 0.00 0.00 43.93 5.68
23 24 2.022207 ACGCACACGAAAACACGC 59.978 55.556 0.00 0.00 43.93 5.34
24 25 2.276123 GCACGCACACGAAAACACG 61.276 57.895 0.00 0.00 43.93 4.49
25 26 2.276123 CGCACGCACACGAAAACAC 61.276 57.895 0.00 0.00 43.93 3.32
26 27 2.022069 CGCACGCACACGAAAACA 59.978 55.556 0.00 0.00 43.93 2.83
27 28 1.581657 AACGCACGCACACGAAAAC 60.582 52.632 0.00 0.00 43.93 2.43
28 29 1.581402 CAACGCACGCACACGAAAA 60.581 52.632 0.00 0.00 43.93 2.29
29 30 2.022069 CAACGCACGCACACGAAA 59.978 55.556 0.00 0.00 43.93 3.46
30 31 3.931130 CCAACGCACGCACACGAA 61.931 61.111 0.00 0.00 43.93 3.85
33 34 3.389727 AACACCAACGCACGCACAC 62.390 57.895 0.00 0.00 0.00 3.82
34 35 3.128188 AACACCAACGCACGCACA 61.128 55.556 0.00 0.00 0.00 4.57
35 36 2.650602 CAACACCAACGCACGCAC 60.651 61.111 0.00 0.00 0.00 5.34
36 37 3.882013 CCAACACCAACGCACGCA 61.882 61.111 0.00 0.00 0.00 5.24
38 39 3.582120 AGCCAACACCAACGCACG 61.582 61.111 0.00 0.00 0.00 5.34
39 40 2.026014 CAGCCAACACCAACGCAC 59.974 61.111 0.00 0.00 0.00 5.34
40 41 2.439338 ACAGCCAACACCAACGCA 60.439 55.556 0.00 0.00 0.00 5.24
41 42 2.026014 CACAGCCAACACCAACGC 59.974 61.111 0.00 0.00 0.00 4.84
42 43 1.063972 CACACAGCCAACACCAACG 59.936 57.895 0.00 0.00 0.00 4.10
43 44 1.226945 GCACACAGCCAACACCAAC 60.227 57.895 0.00 0.00 37.23 3.77
44 45 1.042003 ATGCACACAGCCAACACCAA 61.042 50.000 0.00 0.00 44.83 3.67
45 46 1.454572 GATGCACACAGCCAACACCA 61.455 55.000 0.00 0.00 44.83 4.17
46 47 1.286880 GATGCACACAGCCAACACC 59.713 57.895 0.00 0.00 44.83 4.16
47 48 4.950744 GATGCACACAGCCAACAC 57.049 55.556 0.00 0.00 44.83 3.32
53 54 2.141517 CATAGCTAGGATGCACACAGC 58.858 52.381 0.00 0.00 45.96 4.40
61 62 2.094803 CGGTCTCTGCATAGCTAGGATG 60.095 54.545 10.11 0.00 0.00 3.51
62 63 2.166829 CGGTCTCTGCATAGCTAGGAT 58.833 52.381 10.11 0.00 0.00 3.24
63 64 1.610363 CGGTCTCTGCATAGCTAGGA 58.390 55.000 10.11 0.00 0.00 2.94
64 65 0.600557 CCGGTCTCTGCATAGCTAGG 59.399 60.000 0.00 0.00 0.00 3.02
65 66 0.600557 CCCGGTCTCTGCATAGCTAG 59.399 60.000 0.00 0.00 0.00 3.42
66 67 0.106167 ACCCGGTCTCTGCATAGCTA 60.106 55.000 0.00 0.00 0.00 3.32
67 68 1.381872 ACCCGGTCTCTGCATAGCT 60.382 57.895 0.00 0.00 0.00 3.32
68 69 1.227380 CACCCGGTCTCTGCATAGC 60.227 63.158 0.00 0.00 0.00 2.97
69 70 0.179100 CACACCCGGTCTCTGCATAG 60.179 60.000 0.00 0.00 0.00 2.23
70 71 0.902984 ACACACCCGGTCTCTGCATA 60.903 55.000 0.00 0.00 0.00 3.14
71 72 2.217038 ACACACCCGGTCTCTGCAT 61.217 57.895 0.00 0.00 0.00 3.96
72 73 2.842462 ACACACCCGGTCTCTGCA 60.842 61.111 0.00 0.00 0.00 4.41
73 74 2.357517 CACACACCCGGTCTCTGC 60.358 66.667 0.00 0.00 0.00 4.26
74 75 2.357517 GCACACACCCGGTCTCTG 60.358 66.667 0.00 0.00 0.00 3.35
75 76 2.524394 AGCACACACCCGGTCTCT 60.524 61.111 0.00 0.00 0.00 3.10
76 77 2.048127 GAGCACACACCCGGTCTC 60.048 66.667 0.00 0.00 0.00 3.36
77 78 1.768684 AATGAGCACACACCCGGTCT 61.769 55.000 0.00 0.00 0.00 3.85
78 79 1.302511 AATGAGCACACACCCGGTC 60.303 57.895 0.00 0.00 0.00 4.79
79 80 1.600636 CAATGAGCACACACCCGGT 60.601 57.895 0.00 0.00 0.00 5.28
80 81 1.600636 ACAATGAGCACACACCCGG 60.601 57.895 0.00 0.00 0.00 5.73
81 82 1.165907 ACACAATGAGCACACACCCG 61.166 55.000 0.00 0.00 0.00 5.28
82 83 1.032014 AACACAATGAGCACACACCC 58.968 50.000 0.00 0.00 0.00 4.61
83 84 2.159254 ACAAACACAATGAGCACACACC 60.159 45.455 0.00 0.00 0.00 4.16
84 85 3.149436 ACAAACACAATGAGCACACAC 57.851 42.857 0.00 0.00 0.00 3.82
85 86 4.821260 AGATACAAACACAATGAGCACACA 59.179 37.500 0.00 0.00 0.00 3.72
86 87 5.362556 AGATACAAACACAATGAGCACAC 57.637 39.130 0.00 0.00 0.00 3.82
87 88 6.389830 AAAGATACAAACACAATGAGCACA 57.610 33.333 0.00 0.00 0.00 4.57
88 89 7.434897 TCAAAAAGATACAAACACAATGAGCAC 59.565 33.333 0.00 0.00 0.00 4.40
89 90 7.487484 TCAAAAAGATACAAACACAATGAGCA 58.513 30.769 0.00 0.00 0.00 4.26
90 91 7.928908 TCAAAAAGATACAAACACAATGAGC 57.071 32.000 0.00 0.00 0.00 4.26
91 92 8.430063 GCATCAAAAAGATACAAACACAATGAG 58.570 33.333 0.00 0.00 34.43 2.90
92 93 8.143193 AGCATCAAAAAGATACAAACACAATGA 58.857 29.630 0.00 0.00 34.43 2.57
93 94 8.301730 AGCATCAAAAAGATACAAACACAATG 57.698 30.769 0.00 0.00 34.43 2.82
94 95 7.599998 GGAGCATCAAAAAGATACAAACACAAT 59.400 33.333 0.00 0.00 36.25 2.71
95 96 6.922957 GGAGCATCAAAAAGATACAAACACAA 59.077 34.615 0.00 0.00 36.25 3.33
96 97 6.040278 TGGAGCATCAAAAAGATACAAACACA 59.960 34.615 0.00 0.00 36.25 3.72
97 98 6.446318 TGGAGCATCAAAAAGATACAAACAC 58.554 36.000 0.00 0.00 36.25 3.32
98 99 6.647334 TGGAGCATCAAAAAGATACAAACA 57.353 33.333 0.00 0.00 36.25 2.83
99 100 8.538409 AAATGGAGCATCAAAAAGATACAAAC 57.462 30.769 0.00 0.00 36.25 2.93
100 101 8.991026 CAAAATGGAGCATCAAAAAGATACAAA 58.009 29.630 0.00 0.00 36.25 2.83
101 102 8.366401 TCAAAATGGAGCATCAAAAAGATACAA 58.634 29.630 0.00 0.00 36.25 2.41
102 103 7.894708 TCAAAATGGAGCATCAAAAAGATACA 58.105 30.769 0.00 0.00 36.25 2.29
103 104 8.031277 ACTCAAAATGGAGCATCAAAAAGATAC 58.969 33.333 0.00 0.00 38.50 2.24
104 105 8.125978 ACTCAAAATGGAGCATCAAAAAGATA 57.874 30.769 0.00 0.00 38.50 1.98
105 106 7.001099 ACTCAAAATGGAGCATCAAAAAGAT 57.999 32.000 0.00 0.00 38.50 2.40
106 107 6.040729 TGACTCAAAATGGAGCATCAAAAAGA 59.959 34.615 0.00 0.00 38.50 2.52
107 108 6.218019 TGACTCAAAATGGAGCATCAAAAAG 58.782 36.000 0.00 0.00 38.50 2.27
108 109 6.159299 TGACTCAAAATGGAGCATCAAAAA 57.841 33.333 0.00 0.00 38.50 1.94
109 110 5.787953 TGACTCAAAATGGAGCATCAAAA 57.212 34.783 0.00 0.00 38.50 2.44
110 111 5.787953 TTGACTCAAAATGGAGCATCAAA 57.212 34.783 0.00 0.00 38.50 2.69
111 112 5.988310 ATTGACTCAAAATGGAGCATCAA 57.012 34.783 0.00 0.00 38.50 2.57
112 113 7.465353 TTTATTGACTCAAAATGGAGCATCA 57.535 32.000 0.00 0.00 38.50 3.07
113 114 8.937634 ATTTTATTGACTCAAAATGGAGCATC 57.062 30.769 0.00 0.00 38.50 3.91
114 115 7.983484 GGATTTTATTGACTCAAAATGGAGCAT 59.017 33.333 0.00 0.00 38.50 3.79
115 116 7.039152 TGGATTTTATTGACTCAAAATGGAGCA 60.039 33.333 0.00 0.00 38.50 4.26
116 117 7.276438 GTGGATTTTATTGACTCAAAATGGAGC 59.724 37.037 0.00 0.00 38.50 4.70
117 118 7.761249 GGTGGATTTTATTGACTCAAAATGGAG 59.239 37.037 0.00 0.00 40.79 3.86
118 119 7.310361 GGGTGGATTTTATTGACTCAAAATGGA 60.310 37.037 0.00 0.00 35.14 3.41
119 120 6.818142 GGGTGGATTTTATTGACTCAAAATGG 59.182 38.462 0.00 0.00 35.14 3.16
120 121 7.614494 AGGGTGGATTTTATTGACTCAAAATG 58.386 34.615 0.00 0.00 35.14 2.32
121 122 7.797121 AGGGTGGATTTTATTGACTCAAAAT 57.203 32.000 0.00 0.00 37.12 1.82
122 123 7.610580 AAGGGTGGATTTTATTGACTCAAAA 57.389 32.000 0.00 0.00 0.00 2.44
123 124 7.610580 AAAGGGTGGATTTTATTGACTCAAA 57.389 32.000 0.00 0.00 0.00 2.69
124 125 8.893563 ATAAAGGGTGGATTTTATTGACTCAA 57.106 30.769 0.00 0.00 0.00 3.02
125 126 7.282224 CGATAAAGGGTGGATTTTATTGACTCA 59.718 37.037 0.00 0.00 34.63 3.41
126 127 7.497909 TCGATAAAGGGTGGATTTTATTGACTC 59.502 37.037 3.83 0.00 35.91 3.36
127 128 7.343357 TCGATAAAGGGTGGATTTTATTGACT 58.657 34.615 3.83 0.00 35.91 3.41
128 129 7.562454 TCGATAAAGGGTGGATTTTATTGAC 57.438 36.000 3.83 0.00 35.91 3.18
129 130 8.582657 TTTCGATAAAGGGTGGATTTTATTGA 57.417 30.769 0.00 3.83 37.65 2.57
130 131 9.816354 ATTTTCGATAAAGGGTGGATTTTATTG 57.184 29.630 0.00 0.00 34.27 1.90
137 138 9.503399 GTCTAATATTTTCGATAAAGGGTGGAT 57.497 33.333 0.00 0.00 0.00 3.41
138 139 8.487848 TGTCTAATATTTTCGATAAAGGGTGGA 58.512 33.333 0.00 0.00 0.00 4.02
139 140 8.671384 TGTCTAATATTTTCGATAAAGGGTGG 57.329 34.615 0.00 0.00 0.00 4.61
140 141 8.774586 CCTGTCTAATATTTTCGATAAAGGGTG 58.225 37.037 0.00 0.00 0.00 4.61
141 142 8.491958 ACCTGTCTAATATTTTCGATAAAGGGT 58.508 33.333 0.00 0.00 0.00 4.34
142 143 8.904099 ACCTGTCTAATATTTTCGATAAAGGG 57.096 34.615 0.00 0.00 0.00 3.95
143 144 9.542462 TGACCTGTCTAATATTTTCGATAAAGG 57.458 33.333 0.00 0.00 0.00 3.11
149 150 9.362539 GTTTACTGACCTGTCTAATATTTTCGA 57.637 33.333 0.00 0.00 0.00 3.71
150 151 9.146984 TGTTTACTGACCTGTCTAATATTTTCG 57.853 33.333 0.00 0.00 0.00 3.46
154 155 8.893727 GCATTGTTTACTGACCTGTCTAATATT 58.106 33.333 0.00 0.00 0.00 1.28
155 156 7.499232 GGCATTGTTTACTGACCTGTCTAATAT 59.501 37.037 0.00 0.00 0.00 1.28
156 157 6.821665 GGCATTGTTTACTGACCTGTCTAATA 59.178 38.462 0.00 0.00 0.00 0.98
157 158 5.648092 GGCATTGTTTACTGACCTGTCTAAT 59.352 40.000 0.00 0.00 0.00 1.73
158 159 5.001232 GGCATTGTTTACTGACCTGTCTAA 58.999 41.667 0.00 0.00 0.00 2.10
159 160 4.286032 AGGCATTGTTTACTGACCTGTCTA 59.714 41.667 0.00 0.00 0.00 2.59
160 161 3.073062 AGGCATTGTTTACTGACCTGTCT 59.927 43.478 0.00 0.00 0.00 3.41
161 162 3.412386 AGGCATTGTTTACTGACCTGTC 58.588 45.455 0.00 0.00 0.00 3.51
162 163 3.508845 AGGCATTGTTTACTGACCTGT 57.491 42.857 0.00 0.00 0.00 4.00
163 164 5.957842 TTTAGGCATTGTTTACTGACCTG 57.042 39.130 0.00 0.00 0.00 4.00
166 167 7.120726 ACTGGTATTTAGGCATTGTTTACTGAC 59.879 37.037 0.00 0.00 0.00 3.51
192 193 1.473788 CCTCGATGGATGTGACATGCA 60.474 52.381 21.71 21.71 38.35 3.96
198 199 1.555967 TGTCACCTCGATGGATGTGA 58.444 50.000 10.92 10.92 42.93 3.58
204 205 1.753649 AGTCAGATGTCACCTCGATGG 59.246 52.381 0.00 0.00 42.93 3.51
205 206 4.639135 TTAGTCAGATGTCACCTCGATG 57.361 45.455 0.00 0.00 0.00 3.84
206 207 5.661056 TTTTAGTCAGATGTCACCTCGAT 57.339 39.130 0.00 0.00 0.00 3.59
224 225 7.148373 GCAACCGTGAATACACTCCTATTTTTA 60.148 37.037 0.00 0.00 43.99 1.52
237 238 2.747446 AGAACCATGCAACCGTGAATAC 59.253 45.455 0.00 0.00 0.00 1.89
249 250 5.964758 TGAATAATGTTTGGAGAACCATGC 58.035 37.500 0.00 0.00 46.34 4.06
275 277 7.958053 AACCGCTAAGATACATATAAACACC 57.042 36.000 0.00 0.00 0.00 4.16
296 298 2.124277 AGCTGGGATAACGGAAAACC 57.876 50.000 0.00 0.00 0.00 3.27
304 306 4.397481 AACGGTACTTAGCTGGGATAAC 57.603 45.455 0.00 0.00 0.00 1.89
349 351 2.814097 CGTGGACAAGGGAAAGACCATT 60.814 50.000 0.00 0.00 43.88 3.16
387 389 2.516930 CATAGGGCGGTGGCTTGG 60.517 66.667 0.00 0.00 39.81 3.61
457 499 2.967599 TGCACGATCATAAGCTGAGT 57.032 45.000 0.00 0.00 37.28 3.41
508 550 3.244561 ACACAAGGGATACAGTGAACCAG 60.245 47.826 0.00 0.00 38.34 4.00
633 676 1.512926 AGCAACCAGTACGCAAGAAG 58.487 50.000 0.00 0.00 43.62 2.85
810 863 5.928976 TCTCTTGAGGTTGACTTTTGATGA 58.071 37.500 0.00 0.00 0.00 2.92
841 895 2.328099 GCAGAAAGTCAGCGGGGTG 61.328 63.158 0.00 0.00 0.00 4.61
855 912 8.670521 TTTATATAGAAGAGATCATGGGCAGA 57.329 34.615 0.00 0.00 0.00 4.26
919 1004 2.700329 GCAGGTAGCTGAAGGATGC 58.300 57.895 25.66 5.19 41.15 3.91
1271 9036 4.349503 TCCGGCCATGCTTGCAGT 62.350 61.111 2.24 0.00 0.00 4.40
1272 9037 3.818787 GTCCGGCCATGCTTGCAG 61.819 66.667 2.24 0.00 0.00 4.41
1338 9103 0.698238 ATTGGTTAGAGCAGGTGCCA 59.302 50.000 0.00 0.00 43.38 4.92
1392 9157 0.245266 TCAACTCGGATTACTGCGCA 59.755 50.000 10.98 10.98 35.99 6.09
1404 9169 3.990469 AGCAGACAATAGTGTTCAACTCG 59.010 43.478 0.00 0.00 40.56 4.18
1410 9176 3.575630 TCGACAGCAGACAATAGTGTTC 58.424 45.455 0.00 0.00 38.41 3.18
1474 9260 1.860944 ATGCCTCCCTTGCTTCTGCT 61.861 55.000 0.00 0.00 40.48 4.24
1517 9304 9.436957 AGGGCTGACAATAATTATAGTAAATCG 57.563 33.333 0.00 0.00 0.00 3.34
1676 9479 5.793817 TCTCAAGAAGTTCGGATTTGATCA 58.206 37.500 5.92 0.00 0.00 2.92
1691 9502 8.716646 TCACTAATTAATCGCAATCTCAAGAA 57.283 30.769 0.00 0.00 0.00 2.52
1693 9504 9.941664 AAATCACTAATTAATCGCAATCTCAAG 57.058 29.630 0.00 0.00 0.00 3.02
1999 10562 3.423154 CCTCGAAGCCGGTGCAAC 61.423 66.667 1.90 0.00 41.13 4.17
2020 10583 7.551974 AGTGATAACATTTGTGAATCTGAGAGG 59.448 37.037 0.00 0.00 0.00 3.69
2021 10584 8.489990 AGTGATAACATTTGTGAATCTGAGAG 57.510 34.615 0.00 0.00 0.00 3.20
2025 10588 7.085746 TGCAAGTGATAACATTTGTGAATCTG 58.914 34.615 9.44 1.55 42.82 2.90
2030 10593 7.384660 GGAATTTGCAAGTGATAACATTTGTGA 59.615 33.333 9.44 0.00 42.82 3.58
2035 10598 8.851541 ATTTGGAATTTGCAAGTGATAACATT 57.148 26.923 0.00 0.00 0.00 2.71
2038 10601 8.755696 TGTATTTGGAATTTGCAAGTGATAAC 57.244 30.769 8.57 0.82 0.00 1.89
2092 10655 9.941325 TGTTGCAACAAATGGAGAATAATTATT 57.059 25.926 29.36 10.51 35.67 1.40
2093 10656 9.369904 GTGTTGCAACAAATGGAGAATAATTAT 57.630 29.630 32.61 0.00 41.21 1.28
2094 10657 8.363390 TGTGTTGCAACAAATGGAGAATAATTA 58.637 29.630 32.61 1.88 41.21 1.40
2095 10658 7.215789 TGTGTTGCAACAAATGGAGAATAATT 58.784 30.769 32.61 0.00 41.21 1.40
2096 10659 6.757237 TGTGTTGCAACAAATGGAGAATAAT 58.243 32.000 32.61 0.00 41.21 1.28
2097 10660 6.154203 TGTGTTGCAACAAATGGAGAATAA 57.846 33.333 32.61 3.47 41.21 1.40
2098 10661 5.781210 TGTGTTGCAACAAATGGAGAATA 57.219 34.783 32.61 3.68 41.21 1.75
2099 10662 4.669206 TGTGTTGCAACAAATGGAGAAT 57.331 36.364 32.61 0.00 41.21 2.40
2100 10663 4.462508 TTGTGTTGCAACAAATGGAGAA 57.537 36.364 32.61 11.93 41.21 2.87
2101 10664 4.462508 TTTGTGTTGCAACAAATGGAGA 57.537 36.364 32.61 10.42 43.34 3.71
2108 10671 7.763528 AGTCTTAAATCATTTGTGTTGCAACAA 59.236 29.630 32.61 18.79 41.21 2.83
2109 10672 7.264221 AGTCTTAAATCATTTGTGTTGCAACA 58.736 30.769 27.96 27.96 36.72 3.33
2110 10673 7.698836 AGTCTTAAATCATTTGTGTTGCAAC 57.301 32.000 22.83 22.83 36.72 4.17
2111 10674 9.979578 ATAAGTCTTAAATCATTTGTGTTGCAA 57.020 25.926 0.00 0.00 34.87 4.08
2112 10675 9.979578 AATAAGTCTTAAATCATTTGTGTTGCA 57.020 25.926 0.00 0.00 0.00 4.08
2136 10699 8.540388 TGCTACTTCTTTCCTAGTGAATACAAT 58.460 33.333 0.00 0.00 31.67 2.71
2137 10700 7.903145 TGCTACTTCTTTCCTAGTGAATACAA 58.097 34.615 0.00 0.00 31.67 2.41
2138 10701 7.476540 TGCTACTTCTTTCCTAGTGAATACA 57.523 36.000 0.00 0.00 31.67 2.29
2139 10702 8.950208 AATGCTACTTCTTTCCTAGTGAATAC 57.050 34.615 0.00 0.00 31.67 1.89
2140 10703 8.982723 AGAATGCTACTTCTTTCCTAGTGAATA 58.017 33.333 0.00 0.00 31.38 1.75
2141 10704 7.856415 AGAATGCTACTTCTTTCCTAGTGAAT 58.144 34.615 0.00 0.00 31.38 2.57
2142 10705 7.246171 AGAATGCTACTTCTTTCCTAGTGAA 57.754 36.000 0.00 0.00 31.38 3.18
2143 10706 6.859112 AGAATGCTACTTCTTTCCTAGTGA 57.141 37.500 0.00 0.00 31.38 3.41
2144 10707 9.436957 TTTTAGAATGCTACTTCTTTCCTAGTG 57.563 33.333 2.81 0.00 36.82 2.74
2152 10715 9.905713 TCCACATATTTTAGAATGCTACTTCTT 57.094 29.630 2.81 0.00 36.82 2.52
2153 10716 9.905713 TTCCACATATTTTAGAATGCTACTTCT 57.094 29.630 3.01 3.01 38.90 2.85
2156 10719 9.851686 TGATTCCACATATTTTAGAATGCTACT 57.148 29.630 0.00 0.00 0.00 2.57
2159 10722 9.807649 GTTTGATTCCACATATTTTAGAATGCT 57.192 29.630 0.00 0.00 0.00 3.79
2160 10723 9.807649 AGTTTGATTCCACATATTTTAGAATGC 57.192 29.630 0.00 0.00 0.00 3.56
2200 10763 8.739039 ACATATCTAAATGTGTGCTTTAGCAAA 58.261 29.630 5.91 0.00 42.30 3.68
2201 10764 8.279970 ACATATCTAAATGTGTGCTTTAGCAA 57.720 30.769 5.91 0.00 42.30 3.91
2202 10765 7.552330 TGACATATCTAAATGTGTGCTTTAGCA 59.448 33.333 0.00 0.00 43.55 3.49
2203 10766 7.919690 TGACATATCTAAATGTGTGCTTTAGC 58.080 34.615 0.00 0.00 40.17 3.09
2207 10770 9.618890 ACTTATGACATATCTAAATGTGTGCTT 57.381 29.630 0.00 0.00 40.17 3.91
2224 10787 9.489084 GGACTTATATGTGCAATACTTATGACA 57.511 33.333 5.53 0.00 33.27 3.58
2225 10788 9.712305 AGGACTTATATGTGCAATACTTATGAC 57.288 33.333 11.91 0.00 33.27 3.06
2229 10792 9.542462 GACAAGGACTTATATGTGCAATACTTA 57.458 33.333 11.91 0.00 0.00 2.24
2230 10793 8.046708 TGACAAGGACTTATATGTGCAATACTT 58.953 33.333 11.91 0.00 0.00 2.24
2231 10794 7.564793 TGACAAGGACTTATATGTGCAATACT 58.435 34.615 11.91 0.00 0.00 2.12
2232 10795 7.786178 TGACAAGGACTTATATGTGCAATAC 57.214 36.000 11.91 3.11 0.00 1.89
2233 10796 8.839343 CAATGACAAGGACTTATATGTGCAATA 58.161 33.333 11.91 0.00 0.00 1.90
2234 10797 7.201848 CCAATGACAAGGACTTATATGTGCAAT 60.202 37.037 11.91 0.00 0.00 3.56
2235 10798 6.095300 CCAATGACAAGGACTTATATGTGCAA 59.905 38.462 11.91 0.00 0.00 4.08
2236 10799 5.589855 CCAATGACAAGGACTTATATGTGCA 59.410 40.000 11.91 0.00 0.00 4.57
2237 10800 5.590259 ACCAATGACAAGGACTTATATGTGC 59.410 40.000 4.46 2.46 0.00 4.57
2238 10801 7.050377 AGACCAATGACAAGGACTTATATGTG 58.950 38.462 4.46 0.00 0.00 3.21
2239 10802 7.200434 AGACCAATGACAAGGACTTATATGT 57.800 36.000 4.46 0.00 0.00 2.29
2240 10803 9.784531 ATAAGACCAATGACAAGGACTTATATG 57.215 33.333 21.78 0.00 44.85 1.78
2241 10804 9.784531 CATAAGACCAATGACAAGGACTTATAT 57.215 33.333 22.23 10.65 44.88 0.86
2242 10805 7.715249 GCATAAGACCAATGACAAGGACTTATA 59.285 37.037 22.23 9.39 44.88 0.98
2243 10806 6.543831 GCATAAGACCAATGACAAGGACTTAT 59.456 38.462 19.53 19.53 46.37 1.73
2244 10807 5.880332 GCATAAGACCAATGACAAGGACTTA 59.120 40.000 17.67 17.67 42.94 2.24
2245 10808 4.702131 GCATAAGACCAATGACAAGGACTT 59.298 41.667 15.39 15.39 41.50 3.01
2246 10809 4.265073 GCATAAGACCAATGACAAGGACT 58.735 43.478 4.46 1.10 0.00 3.85
2247 10810 3.063997 CGCATAAGACCAATGACAAGGAC 59.936 47.826 4.46 0.00 0.00 3.85
2248 10811 3.270027 CGCATAAGACCAATGACAAGGA 58.730 45.455 4.46 0.00 0.00 3.36
2249 10812 2.355756 CCGCATAAGACCAATGACAAGG 59.644 50.000 0.00 0.00 0.00 3.61
2250 10813 3.270027 TCCGCATAAGACCAATGACAAG 58.730 45.455 0.00 0.00 0.00 3.16
2251 10814 3.055458 TCTCCGCATAAGACCAATGACAA 60.055 43.478 0.00 0.00 0.00 3.18
2252 10815 2.499693 TCTCCGCATAAGACCAATGACA 59.500 45.455 0.00 0.00 0.00 3.58
2253 10816 3.179443 TCTCCGCATAAGACCAATGAC 57.821 47.619 0.00 0.00 0.00 3.06
2254 10817 4.380531 GAATCTCCGCATAAGACCAATGA 58.619 43.478 0.00 0.00 0.00 2.57
2255 10818 3.185188 CGAATCTCCGCATAAGACCAATG 59.815 47.826 0.00 0.00 0.00 2.82
2256 10819 3.181465 ACGAATCTCCGCATAAGACCAAT 60.181 43.478 0.00 0.00 0.00 3.16
2257 10820 2.167693 ACGAATCTCCGCATAAGACCAA 59.832 45.455 0.00 0.00 0.00 3.67
2258 10821 1.754803 ACGAATCTCCGCATAAGACCA 59.245 47.619 0.00 0.00 0.00 4.02
2259 10822 2.128035 CACGAATCTCCGCATAAGACC 58.872 52.381 0.00 0.00 0.00 3.85
2260 10823 2.535984 CACACGAATCTCCGCATAAGAC 59.464 50.000 0.00 0.00 0.00 3.01
2261 10824 2.481276 CCACACGAATCTCCGCATAAGA 60.481 50.000 0.00 0.00 0.00 2.10
2262 10825 1.860950 CCACACGAATCTCCGCATAAG 59.139 52.381 0.00 0.00 0.00 1.73
2263 10826 1.206132 ACCACACGAATCTCCGCATAA 59.794 47.619 0.00 0.00 0.00 1.90
2264 10827 0.821517 ACCACACGAATCTCCGCATA 59.178 50.000 0.00 0.00 0.00 3.14
2265 10828 0.821517 TACCACACGAATCTCCGCAT 59.178 50.000 0.00 0.00 0.00 4.73
2266 10829 0.821517 ATACCACACGAATCTCCGCA 59.178 50.000 0.00 0.00 0.00 5.69
2267 10830 1.935933 AATACCACACGAATCTCCGC 58.064 50.000 0.00 0.00 0.00 5.54
2268 10831 4.939509 AAAAATACCACACGAATCTCCG 57.060 40.909 0.00 0.00 0.00 4.63
2287 10850 6.945435 AGCAAAGGAAAAGAAAAAGGGAAAAA 59.055 30.769 0.00 0.00 0.00 1.94
2288 10851 6.480763 AGCAAAGGAAAAGAAAAAGGGAAAA 58.519 32.000 0.00 0.00 0.00 2.29
2289 10852 6.061022 AGCAAAGGAAAAGAAAAAGGGAAA 57.939 33.333 0.00 0.00 0.00 3.13
2290 10853 5.692115 AGCAAAGGAAAAGAAAAAGGGAA 57.308 34.783 0.00 0.00 0.00 3.97
2291 10854 5.692115 AAGCAAAGGAAAAGAAAAAGGGA 57.308 34.783 0.00 0.00 0.00 4.20
2292 10855 8.344831 CAATTAAGCAAAGGAAAAGAAAAAGGG 58.655 33.333 0.00 0.00 0.00 3.95
2293 10856 9.108284 TCAATTAAGCAAAGGAAAAGAAAAAGG 57.892 29.630 0.00 0.00 0.00 3.11
2297 10860 9.829507 TGAATCAATTAAGCAAAGGAAAAGAAA 57.170 25.926 0.00 0.00 0.00 2.52
2298 10861 9.260002 GTGAATCAATTAAGCAAAGGAAAAGAA 57.740 29.630 0.00 0.00 0.00 2.52
2299 10862 8.641541 AGTGAATCAATTAAGCAAAGGAAAAGA 58.358 29.630 0.00 0.00 0.00 2.52
2300 10863 8.822652 AGTGAATCAATTAAGCAAAGGAAAAG 57.177 30.769 0.00 0.00 0.00 2.27
2302 10865 9.691362 GTAAGTGAATCAATTAAGCAAAGGAAA 57.309 29.630 4.65 0.00 0.00 3.13
2303 10866 8.855110 TGTAAGTGAATCAATTAAGCAAAGGAA 58.145 29.630 4.65 0.00 0.00 3.36
2304 10867 8.402798 TGTAAGTGAATCAATTAAGCAAAGGA 57.597 30.769 4.65 0.00 0.00 3.36
2305 10868 9.079833 CATGTAAGTGAATCAATTAAGCAAAGG 57.920 33.333 4.65 0.00 0.00 3.11
2306 10869 9.630098 ACATGTAAGTGAATCAATTAAGCAAAG 57.370 29.630 4.65 1.49 0.00 2.77
2307 10870 9.409312 CACATGTAAGTGAATCAATTAAGCAAA 57.591 29.630 4.65 0.00 42.05 3.68
2308 10871 7.541783 GCACATGTAAGTGAATCAATTAAGCAA 59.458 33.333 4.65 0.00 42.05 3.91
2309 10872 7.028962 GCACATGTAAGTGAATCAATTAAGCA 58.971 34.615 4.65 0.96 42.05 3.91
2310 10873 7.028962 TGCACATGTAAGTGAATCAATTAAGC 58.971 34.615 4.65 5.69 42.05 3.09
2311 10874 8.969121 TTGCACATGTAAGTGAATCAATTAAG 57.031 30.769 4.65 1.80 42.05 1.85
2314 10877 9.357652 GTTATTGCACATGTAAGTGAATCAATT 57.642 29.630 0.00 0.61 42.05 2.32
2315 10878 8.742777 AGTTATTGCACATGTAAGTGAATCAAT 58.257 29.630 0.00 1.85 42.05 2.57
2316 10879 8.109705 AGTTATTGCACATGTAAGTGAATCAA 57.890 30.769 0.00 0.00 42.05 2.57
2317 10880 7.686438 AGTTATTGCACATGTAAGTGAATCA 57.314 32.000 0.00 0.00 42.05 2.57
2318 10881 7.846107 CGTAGTTATTGCACATGTAAGTGAATC 59.154 37.037 0.00 0.00 42.05 2.52
2319 10882 7.201609 CCGTAGTTATTGCACATGTAAGTGAAT 60.202 37.037 0.00 0.00 42.05 2.57
2320 10883 6.091577 CCGTAGTTATTGCACATGTAAGTGAA 59.908 38.462 0.00 0.00 42.05 3.18
2321 10884 5.579119 CCGTAGTTATTGCACATGTAAGTGA 59.421 40.000 0.00 0.00 42.05 3.41
2322 10885 5.726688 GCCGTAGTTATTGCACATGTAAGTG 60.727 44.000 0.00 0.00 42.37 3.16
2323 10886 4.331717 GCCGTAGTTATTGCACATGTAAGT 59.668 41.667 0.00 0.00 0.00 2.24
2324 10887 4.331443 TGCCGTAGTTATTGCACATGTAAG 59.669 41.667 0.00 0.00 0.00 2.34
2325 10888 4.254492 TGCCGTAGTTATTGCACATGTAA 58.746 39.130 0.00 0.00 0.00 2.41
2326 10889 3.863041 TGCCGTAGTTATTGCACATGTA 58.137 40.909 0.00 0.00 0.00 2.29
2327 10890 2.705730 TGCCGTAGTTATTGCACATGT 58.294 42.857 0.00 0.00 0.00 3.21
2332 10895 6.443934 AAATTATGTGCCGTAGTTATTGCA 57.556 33.333 0.00 0.00 0.00 4.08
2333 10896 7.274686 ACAAAAATTATGTGCCGTAGTTATTGC 59.725 33.333 0.00 0.00 0.00 3.56
2334 10897 8.682128 ACAAAAATTATGTGCCGTAGTTATTG 57.318 30.769 0.00 0.00 0.00 1.90
2335 10898 9.777575 GTACAAAAATTATGTGCCGTAGTTATT 57.222 29.630 6.98 0.00 32.27 1.40
2336 10899 8.948145 TGTACAAAAATTATGTGCCGTAGTTAT 58.052 29.630 0.00 0.00 33.14 1.89
2337 10900 8.320396 TGTACAAAAATTATGTGCCGTAGTTA 57.680 30.769 0.00 0.00 33.14 2.24
2338 10901 7.204496 TGTACAAAAATTATGTGCCGTAGTT 57.796 32.000 0.00 0.00 33.14 2.24
2339 10902 6.804770 TGTACAAAAATTATGTGCCGTAGT 57.195 33.333 0.00 0.00 33.14 2.73
2340 10903 8.682128 ATTTGTACAAAAATTATGTGCCGTAG 57.318 30.769 23.97 0.00 33.14 3.51
2341 10904 9.557338 GTATTTGTACAAAAATTATGTGCCGTA 57.443 29.630 23.97 5.39 33.14 4.02
2342 10905 8.301002 AGTATTTGTACAAAAATTATGTGCCGT 58.699 29.630 23.97 6.33 33.14 5.68
2343 10906 8.682128 AGTATTTGTACAAAAATTATGTGCCG 57.318 30.769 23.97 0.00 33.14 5.69
2344 10907 9.083080 GGAGTATTTGTACAAAAATTATGTGCC 57.917 33.333 23.97 12.04 33.14 5.01
2345 10908 9.855021 AGGAGTATTTGTACAAAAATTATGTGC 57.145 29.630 23.97 9.95 33.56 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.