Multiple sequence alignment - TraesCS6D01G258300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G258300 chr6D 100.000 6050 0 0 1 6050 364099176 364105225 0.000000e+00 11173.0
1 TraesCS6D01G258300 chr6D 90.647 139 12 1 2239 2376 364101371 364101509 3.720000e-42 183.0
2 TraesCS6D01G258300 chr6D 90.647 139 12 1 2196 2334 364101414 364101551 3.720000e-42 183.0
3 TraesCS6D01G258300 chr6D 97.674 86 2 0 2465 2550 364101552 364101637 1.360000e-31 148.0
4 TraesCS6D01G258300 chr6D 97.674 86 2 0 2377 2462 364101640 364101725 1.360000e-31 148.0
5 TraesCS6D01G258300 chr6B 97.053 2681 53 11 2465 5126 549084060 549086733 0.000000e+00 4490.0
6 TraesCS6D01G258300 chr6B 97.231 1914 43 5 558 2464 549082237 549084147 0.000000e+00 3232.0
7 TraesCS6D01G258300 chr6B 89.722 720 40 12 5117 5824 549086757 549087454 0.000000e+00 889.0
8 TraesCS6D01G258300 chr6B 94.286 175 10 0 5876 6050 549087443 549087617 1.000000e-67 268.0
9 TraesCS6D01G258300 chr6B 81.231 325 39 11 150 471 549081845 549082150 6.060000e-60 243.0
10 TraesCS6D01G258300 chr6B 90.647 139 12 1 2239 2376 549083879 549084017 3.720000e-42 183.0
11 TraesCS6D01G258300 chr6B 90.647 139 12 1 2196 2334 549083922 549084059 3.720000e-42 183.0
12 TraesCS6D01G258300 chr6B 78.689 122 23 3 88 207 125584616 125584496 1.810000e-10 78.7
13 TraesCS6D01G258300 chr6A 96.277 1880 49 7 3248 5126 505440258 505438399 0.000000e+00 3064.0
14 TraesCS6D01G258300 chr6A 93.350 1955 56 16 558 2466 505443114 505441188 0.000000e+00 2822.0
15 TraesCS6D01G258300 chr6A 92.578 768 40 9 2465 3216 505441277 505440511 0.000000e+00 1086.0
16 TraesCS6D01G258300 chr6A 90.595 723 48 10 5118 5833 505438376 505437667 0.000000e+00 941.0
17 TraesCS6D01G258300 chr6A 95.429 175 8 0 5876 6050 505437688 505437514 4.620000e-71 279.0
18 TraesCS6D01G258300 chr6A 93.269 104 7 0 2248 2351 505441469 505441366 2.920000e-33 154.0
19 TraesCS6D01G258300 chr6A 100.000 37 0 0 3215 3251 505440407 505440371 1.090000e-07 69.4
20 TraesCS6D01G258300 chr7B 85.593 118 15 2 65 182 6778335 6778450 8.230000e-24 122.0
21 TraesCS6D01G258300 chr2A 80.503 159 27 4 251 407 628676301 628676145 1.070000e-22 119.0
22 TraesCS6D01G258300 chr2A 91.071 56 5 0 419 474 718606830 718606775 6.500000e-10 76.8
23 TraesCS6D01G258300 chr1A 77.119 236 29 13 244 476 474646820 474646607 4.960000e-21 113.0
24 TraesCS6D01G258300 chr5B 80.263 152 23 7 63 210 526232620 526232472 2.310000e-19 108.0
25 TraesCS6D01G258300 chr5B 85.057 87 12 1 67 153 528702755 528702840 3.000000e-13 87.9
26 TraesCS6D01G258300 chr3B 80.451 133 25 1 53 185 381056743 381056874 3.860000e-17 100.0
27 TraesCS6D01G258300 chr1D 78.049 164 27 3 53 207 392067626 392067463 1.800000e-15 95.3
28 TraesCS6D01G258300 chr1D 88.889 54 4 2 5164 5216 462713208 462713260 1.410000e-06 65.8
29 TraesCS6D01G258300 chr7D 82.857 105 11 6 52 153 122848004 122847904 3.000000e-13 87.9
30 TraesCS6D01G258300 chr7D 89.474 57 6 0 110 166 607030333 607030389 8.410000e-09 73.1
31 TraesCS6D01G258300 chr7D 96.875 32 1 0 5186 5217 566782929 566782960 3.000000e-03 54.7
32 TraesCS6D01G258300 chr3D 81.928 83 13 2 83 164 288319437 288319518 1.090000e-07 69.4
33 TraesCS6D01G258300 chr3D 88.235 51 4 2 5168 5217 611672976 611672927 6.550000e-05 60.2
34 TraesCS6D01G258300 chr7A 96.875 32 1 0 5186 5217 652906476 652906507 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G258300 chr6D 364099176 364105225 6049 False 2367.000000 11173 95.328400 1 6050 5 chr6D.!!$F1 6049
1 TraesCS6D01G258300 chr6B 549081845 549087617 5772 False 1355.428571 4490 91.545286 150 6050 7 chr6B.!!$F1 5900
2 TraesCS6D01G258300 chr6A 505437514 505443114 5600 True 1202.200000 3064 94.499714 558 6050 7 chr6A.!!$R1 5492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.036022 GGGCTGGATATGAGGAGTGC 59.964 60.000 0.00 0.00 0.00 4.40 F
136 137 0.036022 GGCTGGATATGAGGAGTGCC 59.964 60.000 0.00 0.00 0.00 5.01 F
173 174 0.250513 GAGGTCCATTTGAGGCGTCT 59.749 55.000 8.06 0.00 0.00 4.18 F
285 288 0.251033 AAACCCAGGCCTAAACCGAC 60.251 55.000 3.98 0.00 33.69 4.79 F
369 372 0.594110 CGGGCCGCTTTCTTAAAACA 59.406 50.000 15.42 0.00 0.00 2.83 F
391 394 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19 F
588 615 1.068250 GCCGACATGTCTAGGAGGC 59.932 63.158 22.95 21.92 36.08 4.70 F
2484 2557 0.031585 TCTCCTCAAACGTGTGTCGG 59.968 55.000 5.45 7.96 44.69 4.79 F
2589 2662 0.247460 TCAGAGGTTCAGGATGCACG 59.753 55.000 0.00 0.00 31.17 5.34 F
4354 4668 0.674895 AATCGCCAGGCTTCAGTGAC 60.675 55.000 10.54 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1557 1.179174 TGGCCTCATAGTCGATCCCG 61.179 60.000 3.32 0.0 37.07 5.14 R
1743 1785 2.344872 GGTAACTTGACGGCGGGT 59.655 61.111 13.24 1.2 0.00 5.28 R
1958 2000 3.865446 CAATCACCTGACTACATGCAGA 58.135 45.455 0.00 0.0 34.06 4.26 R
2202 2255 3.239712 CGAGGTTTGAAGAAACGCAAAAC 59.760 43.478 0.00 0.0 42.20 2.43 R
2311 2384 0.878961 GACACTTTGTCGCCGTTCCT 60.879 55.000 0.00 0.0 37.67 3.36 R
2465 2538 0.031585 CCGACACACGTTTGAGGAGA 59.968 55.000 9.03 0.0 40.78 3.71 R
2549 2622 0.105593 AGAGGATACGCCAGCACATG 59.894 55.000 0.00 0.0 46.39 3.21 R
4325 4639 0.108186 CCTGGCGATTACAGACTGCA 60.108 55.000 1.25 0.0 38.20 4.41 R
4590 4904 1.468520 GCCAAAAGTCTAGCATTCGCA 59.531 47.619 0.00 0.0 42.27 5.10 R
5816 6178 0.950116 GAGCAGAATGGCTGTATGGC 59.050 55.000 0.00 0.0 45.99 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.369692 TCTTGGGTGTGTGTAGGCG 59.630 57.895 0.00 0.00 0.00 5.52
19 20 2.281208 TTGGGTGTGTGTAGGCGC 60.281 61.111 0.00 0.00 0.00 6.53
20 21 4.673298 TGGGTGTGTGTAGGCGCG 62.673 66.667 0.00 0.00 0.00 6.86
21 22 4.367023 GGGTGTGTGTAGGCGCGA 62.367 66.667 12.10 0.00 0.00 5.87
22 23 2.125673 GGTGTGTGTAGGCGCGAT 60.126 61.111 12.10 0.00 0.00 4.58
23 24 1.740296 GGTGTGTGTAGGCGCGATT 60.740 57.895 12.10 0.00 0.00 3.34
24 25 1.296056 GGTGTGTGTAGGCGCGATTT 61.296 55.000 12.10 0.00 0.00 2.17
25 26 0.515564 GTGTGTGTAGGCGCGATTTT 59.484 50.000 12.10 0.00 0.00 1.82
26 27 0.515127 TGTGTGTAGGCGCGATTTTG 59.485 50.000 12.10 0.00 0.00 2.44
27 28 0.515564 GTGTGTAGGCGCGATTTTGT 59.484 50.000 12.10 0.00 0.00 2.83
28 29 1.069500 GTGTGTAGGCGCGATTTTGTT 60.069 47.619 12.10 0.00 0.00 2.83
29 30 1.069568 TGTGTAGGCGCGATTTTGTTG 60.070 47.619 12.10 0.00 0.00 3.33
30 31 1.069500 GTGTAGGCGCGATTTTGTTGT 60.069 47.619 12.10 0.00 0.00 3.32
31 32 1.604755 TGTAGGCGCGATTTTGTTGTT 59.395 42.857 12.10 0.00 0.00 2.83
32 33 2.033550 TGTAGGCGCGATTTTGTTGTTT 59.966 40.909 12.10 0.00 0.00 2.83
33 34 2.217429 AGGCGCGATTTTGTTGTTTT 57.783 40.000 12.10 0.00 0.00 2.43
34 35 2.124122 AGGCGCGATTTTGTTGTTTTC 58.876 42.857 12.10 0.00 0.00 2.29
35 36 2.124122 GGCGCGATTTTGTTGTTTTCT 58.876 42.857 12.10 0.00 0.00 2.52
36 37 3.003897 AGGCGCGATTTTGTTGTTTTCTA 59.996 39.130 12.10 0.00 0.00 2.10
37 38 3.118972 GGCGCGATTTTGTTGTTTTCTAC 59.881 43.478 12.10 0.00 0.00 2.59
38 39 3.972502 GCGCGATTTTGTTGTTTTCTACT 59.027 39.130 12.10 0.00 0.00 2.57
39 40 5.141568 GCGCGATTTTGTTGTTTTCTACTA 58.858 37.500 12.10 0.00 0.00 1.82
40 41 5.057646 GCGCGATTTTGTTGTTTTCTACTAC 59.942 40.000 12.10 0.00 33.76 2.73
41 42 5.277449 CGCGATTTTGTTGTTTTCTACTACG 59.723 40.000 0.00 0.00 35.58 3.51
42 43 6.131389 GCGATTTTGTTGTTTTCTACTACGT 58.869 36.000 0.00 0.00 35.58 3.57
43 44 6.630045 GCGATTTTGTTGTTTTCTACTACGTT 59.370 34.615 0.00 0.00 35.58 3.99
44 45 7.149398 GCGATTTTGTTGTTTTCTACTACGTTC 60.149 37.037 0.00 0.00 35.58 3.95
45 46 7.319615 CGATTTTGTTGTTTTCTACTACGTTCC 59.680 37.037 0.00 0.00 35.58 3.62
46 47 5.989551 TTGTTGTTTTCTACTACGTTCCC 57.010 39.130 0.00 0.00 35.58 3.97
47 48 4.379652 TGTTGTTTTCTACTACGTTCCCC 58.620 43.478 0.00 0.00 35.58 4.81
48 49 4.141756 TGTTGTTTTCTACTACGTTCCCCA 60.142 41.667 0.00 0.00 35.58 4.96
49 50 4.686191 TGTTTTCTACTACGTTCCCCAA 57.314 40.909 0.00 0.00 0.00 4.12
50 51 4.379652 TGTTTTCTACTACGTTCCCCAAC 58.620 43.478 0.00 0.00 0.00 3.77
51 52 4.141756 TGTTTTCTACTACGTTCCCCAACA 60.142 41.667 0.00 0.00 32.14 3.33
52 53 3.947910 TTCTACTACGTTCCCCAACAG 57.052 47.619 0.00 0.00 32.14 3.16
53 54 2.173519 TCTACTACGTTCCCCAACAGG 58.826 52.381 0.00 0.00 32.14 4.00
62 63 2.677228 CCCAACAGGGTAGGCCTG 59.323 66.667 17.99 0.25 37.83 4.85
64 65 1.299976 CCAACAGGGTAGGCCTGTC 59.700 63.158 17.99 8.48 46.24 3.51
65 66 1.079127 CAACAGGGTAGGCCTGTCG 60.079 63.158 17.99 1.36 46.24 4.35
66 67 2.291043 AACAGGGTAGGCCTGTCGG 61.291 63.158 17.99 7.93 46.24 4.79
67 68 3.470888 CAGGGTAGGCCTGTCGGG 61.471 72.222 17.99 0.00 38.36 5.14
68 69 4.007323 AGGGTAGGCCTGTCGGGT 62.007 66.667 17.99 0.00 37.43 5.28
69 70 3.468140 GGGTAGGCCTGTCGGGTC 61.468 72.222 17.99 0.00 40.74 4.46
70 71 3.468140 GGTAGGCCTGTCGGGTCC 61.468 72.222 17.99 0.71 41.53 4.46
71 72 3.834799 GTAGGCCTGTCGGGTCCG 61.835 72.222 17.99 2.52 41.53 4.79
72 73 4.051167 TAGGCCTGTCGGGTCCGA 62.051 66.667 17.99 8.14 46.87 4.55
102 103 3.161557 GCCCGGGCATCCTCTTAT 58.838 61.111 40.73 0.00 41.49 1.73
103 104 1.003233 GCCCGGGCATCCTCTTATC 60.003 63.158 40.73 5.45 41.49 1.75
104 105 1.484444 GCCCGGGCATCCTCTTATCT 61.484 60.000 40.73 0.00 41.49 1.98
105 106 0.322975 CCCGGGCATCCTCTTATCTG 59.677 60.000 8.08 0.00 0.00 2.90
106 107 0.321122 CCGGGCATCCTCTTATCTGC 60.321 60.000 0.00 0.00 0.00 4.26
107 108 0.683973 CGGGCATCCTCTTATCTGCT 59.316 55.000 0.00 0.00 35.03 4.24
108 109 1.071385 CGGGCATCCTCTTATCTGCTT 59.929 52.381 0.00 0.00 35.03 3.91
109 110 2.777094 GGGCATCCTCTTATCTGCTTC 58.223 52.381 0.00 0.00 35.03 3.86
110 111 2.105477 GGGCATCCTCTTATCTGCTTCA 59.895 50.000 0.00 0.00 35.03 3.02
111 112 3.244840 GGGCATCCTCTTATCTGCTTCAT 60.245 47.826 0.00 0.00 35.03 2.57
112 113 4.396522 GGCATCCTCTTATCTGCTTCATT 58.603 43.478 0.00 0.00 35.03 2.57
113 114 4.826183 GGCATCCTCTTATCTGCTTCATTT 59.174 41.667 0.00 0.00 35.03 2.32
114 115 5.301298 GGCATCCTCTTATCTGCTTCATTTT 59.699 40.000 0.00 0.00 35.03 1.82
115 116 6.183360 GGCATCCTCTTATCTGCTTCATTTTT 60.183 38.462 0.00 0.00 35.03 1.94
116 117 6.696148 GCATCCTCTTATCTGCTTCATTTTTG 59.304 38.462 0.00 0.00 0.00 2.44
117 118 6.764308 TCCTCTTATCTGCTTCATTTTTGG 57.236 37.500 0.00 0.00 0.00 3.28
118 119 5.653769 TCCTCTTATCTGCTTCATTTTTGGG 59.346 40.000 0.00 0.00 0.00 4.12
119 120 5.329035 TCTTATCTGCTTCATTTTTGGGC 57.671 39.130 0.00 0.00 0.00 5.36
120 121 5.018809 TCTTATCTGCTTCATTTTTGGGCT 58.981 37.500 0.00 0.00 0.00 5.19
121 122 3.604875 ATCTGCTTCATTTTTGGGCTG 57.395 42.857 0.00 0.00 0.00 4.85
122 123 1.619827 TCTGCTTCATTTTTGGGCTGG 59.380 47.619 0.00 0.00 0.00 4.85
123 124 1.619827 CTGCTTCATTTTTGGGCTGGA 59.380 47.619 0.00 0.00 0.00 3.86
124 125 2.235402 CTGCTTCATTTTTGGGCTGGAT 59.765 45.455 0.00 0.00 0.00 3.41
125 126 3.439154 TGCTTCATTTTTGGGCTGGATA 58.561 40.909 0.00 0.00 0.00 2.59
126 127 4.032310 TGCTTCATTTTTGGGCTGGATAT 58.968 39.130 0.00 0.00 0.00 1.63
127 128 4.141892 TGCTTCATTTTTGGGCTGGATATG 60.142 41.667 0.00 0.00 0.00 1.78
128 129 4.099881 GCTTCATTTTTGGGCTGGATATGA 59.900 41.667 0.00 0.00 0.00 2.15
129 130 5.738208 GCTTCATTTTTGGGCTGGATATGAG 60.738 44.000 0.00 0.00 0.00 2.90
130 131 4.217510 TCATTTTTGGGCTGGATATGAGG 58.782 43.478 0.00 0.00 0.00 3.86
131 132 4.079269 TCATTTTTGGGCTGGATATGAGGA 60.079 41.667 0.00 0.00 0.00 3.71
132 133 3.582998 TTTTGGGCTGGATATGAGGAG 57.417 47.619 0.00 0.00 0.00 3.69
133 134 2.196742 TTGGGCTGGATATGAGGAGT 57.803 50.000 0.00 0.00 0.00 3.85
134 135 1.427809 TGGGCTGGATATGAGGAGTG 58.572 55.000 0.00 0.00 0.00 3.51
135 136 0.036022 GGGCTGGATATGAGGAGTGC 59.964 60.000 0.00 0.00 0.00 4.40
136 137 0.036022 GGCTGGATATGAGGAGTGCC 59.964 60.000 0.00 0.00 0.00 5.01
137 138 0.320247 GCTGGATATGAGGAGTGCCG 60.320 60.000 0.00 0.00 39.96 5.69
138 139 0.319728 CTGGATATGAGGAGTGCCGG 59.680 60.000 0.00 0.00 39.96 6.13
139 140 0.398522 TGGATATGAGGAGTGCCGGT 60.399 55.000 1.90 0.00 39.96 5.28
140 141 0.318762 GGATATGAGGAGTGCCGGTC 59.681 60.000 1.90 0.00 39.96 4.79
141 142 1.040646 GATATGAGGAGTGCCGGTCA 58.959 55.000 1.90 0.00 39.96 4.02
142 143 1.412710 GATATGAGGAGTGCCGGTCAA 59.587 52.381 1.90 0.00 39.96 3.18
143 144 0.535335 TATGAGGAGTGCCGGTCAAC 59.465 55.000 1.90 0.00 39.96 3.18
144 145 2.047179 GAGGAGTGCCGGTCAACC 60.047 66.667 1.90 8.96 39.96 3.77
145 146 3.607370 GAGGAGTGCCGGTCAACCC 62.607 68.421 1.90 6.51 39.96 4.11
160 161 4.125695 CCCGGACGTTCGAGGTCC 62.126 72.222 20.12 21.55 46.62 4.46
169 170 1.087501 GTTCGAGGTCCATTTGAGGC 58.912 55.000 0.00 0.00 0.00 4.70
171 172 1.079127 CGAGGTCCATTTGAGGCGT 60.079 57.895 0.00 0.00 0.00 5.68
173 174 0.250513 GAGGTCCATTTGAGGCGTCT 59.749 55.000 8.06 0.00 0.00 4.18
179 180 1.081892 CATTTGAGGCGTCTGTCTGG 58.918 55.000 8.06 0.00 0.00 3.86
182 183 1.816863 TTGAGGCGTCTGTCTGGGTC 61.817 60.000 8.06 0.00 0.00 4.46
184 185 3.371063 GGCGTCTGTCTGGGTCGA 61.371 66.667 0.00 0.00 0.00 4.20
228 231 3.255888 CAGTATAGCTGGCCATAAGTCGA 59.744 47.826 5.51 0.00 41.42 4.20
230 233 2.596904 TAGCTGGCCATAAGTCGAAC 57.403 50.000 5.51 0.00 0.00 3.95
231 234 0.905357 AGCTGGCCATAAGTCGAACT 59.095 50.000 5.51 0.00 0.00 3.01
232 235 2.108168 AGCTGGCCATAAGTCGAACTA 58.892 47.619 5.51 0.00 0.00 2.24
233 236 2.500098 AGCTGGCCATAAGTCGAACTAA 59.500 45.455 5.51 0.00 0.00 2.24
234 237 2.608090 GCTGGCCATAAGTCGAACTAAC 59.392 50.000 5.51 0.00 0.00 2.34
236 239 2.568062 TGGCCATAAGTCGAACTAACCA 59.432 45.455 0.00 0.00 0.00 3.67
239 242 3.195661 CCATAAGTCGAACTAACCAGGC 58.804 50.000 0.00 0.00 0.00 4.85
241 244 1.053424 AAGTCGAACTAACCAGGCCA 58.947 50.000 5.01 0.00 0.00 5.36
244 247 1.745489 CGAACTAACCAGGCCAGGC 60.745 63.158 15.37 1.26 0.00 4.85
283 286 1.334160 AAAAACCCAGGCCTAAACCG 58.666 50.000 3.98 0.00 33.69 4.44
284 287 0.479378 AAAACCCAGGCCTAAACCGA 59.521 50.000 3.98 0.00 33.69 4.69
285 288 0.251033 AAACCCAGGCCTAAACCGAC 60.251 55.000 3.98 0.00 33.69 4.79
286 289 2.133359 AACCCAGGCCTAAACCGACC 62.133 60.000 3.98 0.00 33.69 4.79
287 290 2.598787 CCCAGGCCTAAACCGACCA 61.599 63.158 3.98 0.00 33.69 4.02
316 319 1.000896 ATTTCAGACCCAAGCCCGG 60.001 57.895 0.00 0.00 0.00 5.73
324 327 4.757355 CCAAGCCCGGCCCATCAA 62.757 66.667 5.55 0.00 0.00 2.57
327 330 2.995077 AAGCCCGGCCCATCAATGA 61.995 57.895 5.55 0.00 0.00 2.57
351 354 2.202932 CCATCGGGCCTTGAGTCG 60.203 66.667 0.84 0.00 0.00 4.18
353 356 3.470888 ATCGGGCCTTGAGTCGGG 61.471 66.667 0.84 0.00 0.00 5.14
368 371 0.876399 TCGGGCCGCTTTCTTAAAAC 59.124 50.000 23.83 0.00 0.00 2.43
369 372 0.594110 CGGGCCGCTTTCTTAAAACA 59.406 50.000 15.42 0.00 0.00 2.83
391 394 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
392 395 2.241043 ATATGCCAAGCCCAAGCCCA 62.241 55.000 0.00 0.00 41.25 5.36
393 396 2.452959 TATGCCAAGCCCAAGCCCAA 62.453 55.000 0.00 0.00 41.25 4.12
394 397 3.698820 GCCAAGCCCAAGCCCAAG 61.699 66.667 0.00 0.00 41.25 3.61
395 398 3.698820 CCAAGCCCAAGCCCAAGC 61.699 66.667 0.00 0.00 41.25 4.01
396 399 3.698820 CAAGCCCAAGCCCAAGCC 61.699 66.667 0.00 0.00 41.25 4.35
428 431 2.551459 CAGCCTCCAGACTCAAAACTTG 59.449 50.000 0.00 0.00 0.00 3.16
436 439 1.115326 ACTCAAAACTTGGGCCCAGC 61.115 55.000 26.87 0.00 33.25 4.85
482 486 4.438346 CCAGGTCGGGCTATTTCG 57.562 61.111 0.00 0.00 0.00 3.46
483 487 1.820581 CCAGGTCGGGCTATTTCGA 59.179 57.895 0.00 0.00 0.00 3.71
489 493 4.432859 GGGCTATTTCGACCGGAC 57.567 61.111 9.46 0.00 0.00 4.79
490 494 1.227468 GGGCTATTTCGACCGGACC 60.227 63.158 9.46 0.00 0.00 4.46
491 495 1.590792 GGCTATTTCGACCGGACCG 60.591 63.158 9.46 11.95 0.00 4.79
511 515 1.756538 GGGTTTTCATGGCCAGGTATG 59.243 52.381 18.43 7.60 0.00 2.39
520 526 4.189580 CCAGGTATGGTGGCCGGG 62.190 72.222 2.18 0.00 42.17 5.73
521 527 4.189580 CAGGTATGGTGGCCGGGG 62.190 72.222 2.18 0.00 0.00 5.73
524 530 2.769195 GTATGGTGGCCGGGGGTA 60.769 66.667 2.18 0.00 0.00 3.69
525 531 2.769195 TATGGTGGCCGGGGGTAC 60.769 66.667 2.18 0.00 0.00 3.34
539 545 1.962306 GGTACGCACGGGCTTTTGA 60.962 57.895 8.62 0.00 38.10 2.69
544 550 2.676471 CACGGGCTTTTGAGGGGG 60.676 66.667 0.00 0.00 0.00 5.40
554 560 4.938756 TGAGGGGGTTGGGGTGCT 62.939 66.667 0.00 0.00 0.00 4.40
555 561 4.366684 GAGGGGGTTGGGGTGCTG 62.367 72.222 0.00 0.00 0.00 4.41
568 595 1.970640 GGGTGCTGGGAAGATTGTTTT 59.029 47.619 0.00 0.00 0.00 2.43
578 605 3.244976 GAAGATTGTTTTGGCCGACATG 58.755 45.455 7.17 0.00 0.00 3.21
581 608 1.686355 TTGTTTTGGCCGACATGTCT 58.314 45.000 22.95 0.00 0.00 3.41
588 615 1.068250 GCCGACATGTCTAGGAGGC 59.932 63.158 22.95 21.92 36.08 4.70
589 616 1.742768 CCGACATGTCTAGGAGGCC 59.257 63.158 22.95 0.00 0.00 5.19
597 624 1.379977 TCTAGGAGGCCGTGGACTG 60.380 63.158 0.00 0.00 30.74 3.51
598 625 2.363795 TAGGAGGCCGTGGACTGG 60.364 66.667 0.00 0.00 30.74 4.00
813 851 2.017559 CTCCCCGTCCTTGGATCGAC 62.018 65.000 11.26 0.00 0.00 4.20
1007 1049 1.202486 GGCGATTAGACCAATGGACGA 60.202 52.381 6.16 0.00 0.00 4.20
1539 1581 3.367910 GGATCGACTATGAGGCCATTCTC 60.368 52.174 5.01 0.00 34.31 2.87
1758 1800 2.357760 GCACCCGCCGTCAAGTTA 60.358 61.111 0.00 0.00 0.00 2.24
1957 1999 5.830457 TGTGATGCTCATAGCTAGAAGTAGT 59.170 40.000 0.00 0.00 42.97 2.73
1958 2000 6.322456 TGTGATGCTCATAGCTAGAAGTAGTT 59.678 38.462 0.00 0.00 42.97 2.24
1967 2009 7.502561 TCATAGCTAGAAGTAGTTCTGCATGTA 59.497 37.037 20.93 11.61 43.29 2.29
1968 2010 6.142818 AGCTAGAAGTAGTTCTGCATGTAG 57.857 41.667 20.93 11.11 43.29 2.74
2107 2156 7.013655 GTCTTTAACCACATATTGAGGCATCAT 59.986 37.037 0.03 0.00 34.73 2.45
2201 2254 7.613585 TCTGCATTATTTGACCATGAATTGTT 58.386 30.769 0.00 0.00 0.00 2.83
2202 2255 7.546316 TCTGCATTATTTGACCATGAATTGTTG 59.454 33.333 0.00 0.00 0.00 3.33
2311 2384 5.167845 GCTTTGTGTTTCTTCAAACCTTGA 58.832 37.500 0.00 0.00 41.25 3.02
2464 2537 2.477375 TGCACTTTAAACCGTTAGCGAG 59.523 45.455 0.00 0.00 41.33 5.03
2465 2538 2.477754 GCACTTTAAACCGTTAGCGAGT 59.522 45.455 0.00 0.00 41.33 4.18
2466 2539 3.422732 GCACTTTAAACCGTTAGCGAGTC 60.423 47.826 0.00 0.00 41.33 3.36
2467 2540 3.985925 CACTTTAAACCGTTAGCGAGTCT 59.014 43.478 0.00 0.00 41.33 3.24
2468 2541 4.089636 CACTTTAAACCGTTAGCGAGTCTC 59.910 45.833 0.00 0.00 41.33 3.36
2469 2542 2.927553 TAAACCGTTAGCGAGTCTCC 57.072 50.000 0.00 0.00 41.33 3.71
2470 2543 1.254954 AAACCGTTAGCGAGTCTCCT 58.745 50.000 0.00 0.00 41.33 3.69
2471 2544 0.810016 AACCGTTAGCGAGTCTCCTC 59.190 55.000 0.00 0.00 41.33 3.71
2472 2545 0.322277 ACCGTTAGCGAGTCTCCTCA 60.322 55.000 0.00 0.00 41.33 3.86
2473 2546 0.809385 CCGTTAGCGAGTCTCCTCAA 59.191 55.000 0.00 0.00 41.33 3.02
2474 2547 1.201647 CCGTTAGCGAGTCTCCTCAAA 59.798 52.381 0.00 0.00 41.33 2.69
2475 2548 2.251893 CGTTAGCGAGTCTCCTCAAAC 58.748 52.381 0.00 0.00 41.33 2.93
2476 2549 2.251893 GTTAGCGAGTCTCCTCAAACG 58.748 52.381 0.00 0.00 37.59 3.60
2477 2550 1.531423 TAGCGAGTCTCCTCAAACGT 58.469 50.000 0.00 0.00 37.59 3.99
2478 2551 0.039074 AGCGAGTCTCCTCAAACGTG 60.039 55.000 0.00 0.00 37.59 4.49
2479 2552 0.318784 GCGAGTCTCCTCAAACGTGT 60.319 55.000 0.00 0.00 37.59 4.49
2480 2553 1.409412 CGAGTCTCCTCAAACGTGTG 58.591 55.000 0.00 0.00 37.59 3.82
2481 2554 1.269102 CGAGTCTCCTCAAACGTGTGT 60.269 52.381 5.45 0.00 37.59 3.72
2482 2555 2.395654 GAGTCTCCTCAAACGTGTGTC 58.604 52.381 5.45 0.00 37.67 3.67
2483 2556 1.129326 GTCTCCTCAAACGTGTGTCG 58.871 55.000 5.45 0.00 46.00 4.35
2484 2557 0.031585 TCTCCTCAAACGTGTGTCGG 59.968 55.000 5.45 7.96 44.69 4.79
2485 2558 0.249322 CTCCTCAAACGTGTGTCGGT 60.249 55.000 5.45 0.00 44.69 4.69
2491 2564 1.349282 AACGTGTGTCGGTTTTCGC 59.651 52.632 0.00 0.00 44.69 4.70
2492 2565 1.085501 AACGTGTGTCGGTTTTCGCT 61.086 50.000 0.00 0.00 44.69 4.93
2493 2566 1.085501 ACGTGTGTCGGTTTTCGCTT 61.086 50.000 0.00 0.00 44.69 4.68
2494 2567 0.382636 CGTGTGTCGGTTTTCGCTTC 60.383 55.000 0.00 0.00 39.05 3.86
2495 2568 0.935196 GTGTGTCGGTTTTCGCTTCT 59.065 50.000 0.00 0.00 39.05 2.85
2496 2569 1.329599 GTGTGTCGGTTTTCGCTTCTT 59.670 47.619 0.00 0.00 39.05 2.52
2497 2570 1.329292 TGTGTCGGTTTTCGCTTCTTG 59.671 47.619 0.00 0.00 39.05 3.02
2498 2571 1.595794 GTGTCGGTTTTCGCTTCTTGA 59.404 47.619 0.00 0.00 39.05 3.02
2499 2572 2.031191 GTGTCGGTTTTCGCTTCTTGAA 59.969 45.455 0.00 0.00 39.05 2.69
2500 2573 2.875933 TGTCGGTTTTCGCTTCTTGAAT 59.124 40.909 0.00 0.00 39.05 2.57
2501 2574 3.314080 TGTCGGTTTTCGCTTCTTGAATT 59.686 39.130 0.00 0.00 39.05 2.17
2502 2575 4.201970 TGTCGGTTTTCGCTTCTTGAATTT 60.202 37.500 0.00 0.00 39.05 1.82
2503 2576 4.738252 GTCGGTTTTCGCTTCTTGAATTTT 59.262 37.500 0.00 0.00 39.05 1.82
2504 2577 5.910723 GTCGGTTTTCGCTTCTTGAATTTTA 59.089 36.000 0.00 0.00 39.05 1.52
2505 2578 6.086371 GTCGGTTTTCGCTTCTTGAATTTTAG 59.914 38.462 0.00 0.00 39.05 1.85
2506 2579 6.017770 TCGGTTTTCGCTTCTTGAATTTTAGA 60.018 34.615 0.00 0.00 39.05 2.10
2507 2580 6.303259 CGGTTTTCGCTTCTTGAATTTTAGAG 59.697 38.462 0.00 0.00 0.00 2.43
2508 2581 6.582672 GGTTTTCGCTTCTTGAATTTTAGAGG 59.417 38.462 0.00 0.00 0.00 3.69
2509 2582 7.360361 GTTTTCGCTTCTTGAATTTTAGAGGA 58.640 34.615 4.68 0.00 0.00 3.71
2510 2583 7.687941 TTTCGCTTCTTGAATTTTAGAGGAT 57.312 32.000 4.68 0.00 0.00 3.24
2511 2584 6.910536 TCGCTTCTTGAATTTTAGAGGATC 57.089 37.500 4.68 0.00 0.00 3.36
2529 2602 7.804843 GAGGATCTGAAATTGATGTCATCTT 57.195 36.000 13.90 0.16 0.00 2.40
2530 2603 7.569639 AGGATCTGAAATTGATGTCATCTTG 57.430 36.000 13.90 0.00 0.00 3.02
2531 2604 7.117397 AGGATCTGAAATTGATGTCATCTTGT 58.883 34.615 13.90 0.00 0.00 3.16
2532 2605 7.067129 AGGATCTGAAATTGATGTCATCTTGTG 59.933 37.037 13.90 0.00 0.00 3.33
2533 2606 5.946298 TCTGAAATTGATGTCATCTTGTGC 58.054 37.500 13.90 2.32 0.00 4.57
2534 2607 5.474189 TCTGAAATTGATGTCATCTTGTGCA 59.526 36.000 13.90 6.31 0.00 4.57
2535 2608 5.463286 TGAAATTGATGTCATCTTGTGCAC 58.537 37.500 10.75 10.75 0.00 4.57
2536 2609 5.242171 TGAAATTGATGTCATCTTGTGCACT 59.758 36.000 19.41 0.00 0.00 4.40
2537 2610 5.717078 AATTGATGTCATCTTGTGCACTT 57.283 34.783 19.41 0.00 0.00 3.16
2538 2611 5.717078 ATTGATGTCATCTTGTGCACTTT 57.283 34.783 19.41 0.00 0.00 2.66
2539 2612 6.822667 ATTGATGTCATCTTGTGCACTTTA 57.177 33.333 19.41 3.09 0.00 1.85
2540 2613 6.631971 TTGATGTCATCTTGTGCACTTTAA 57.368 33.333 19.41 2.93 0.00 1.52
2541 2614 6.631971 TGATGTCATCTTGTGCACTTTAAA 57.368 33.333 19.41 2.53 0.00 1.52
2542 2615 6.437928 TGATGTCATCTTGTGCACTTTAAAC 58.562 36.000 19.41 9.73 0.00 2.01
2543 2616 5.181690 TGTCATCTTGTGCACTTTAAACC 57.818 39.130 19.41 2.17 0.00 3.27
2544 2617 4.219033 GTCATCTTGTGCACTTTAAACCG 58.781 43.478 19.41 0.00 0.00 4.44
2545 2618 3.880490 TCATCTTGTGCACTTTAAACCGT 59.120 39.130 19.41 0.00 0.00 4.83
2546 2619 4.336993 TCATCTTGTGCACTTTAAACCGTT 59.663 37.500 19.41 0.00 0.00 4.44
2547 2620 5.527951 TCATCTTGTGCACTTTAAACCGTTA 59.472 36.000 19.41 0.00 0.00 3.18
2548 2621 5.412526 TCTTGTGCACTTTAAACCGTTAG 57.587 39.130 19.41 0.00 0.00 2.34
2549 2622 3.612472 TGTGCACTTTAAACCGTTAGC 57.388 42.857 19.41 0.00 0.00 3.09
2550 2623 2.943690 TGTGCACTTTAAACCGTTAGCA 59.056 40.909 19.41 0.00 0.00 3.49
2551 2624 3.566322 TGTGCACTTTAAACCGTTAGCAT 59.434 39.130 19.41 0.00 32.98 3.79
2589 2662 0.247460 TCAGAGGTTCAGGATGCACG 59.753 55.000 0.00 0.00 31.17 5.34
2610 2683 3.303495 CGTCACATATGTTCTGTCGGTTC 59.697 47.826 5.37 0.00 0.00 3.62
2890 2963 8.378565 TCTTTCAAAGTCTAGAGAAATCATGGT 58.621 33.333 0.00 0.00 30.51 3.55
3070 3143 9.877178 ATACTGTCAAATTACTCAGAGTTTAGG 57.123 33.333 8.80 0.00 0.00 2.69
3089 3162 4.553330 AGGTACATGGTCTGTTGTTAGG 57.447 45.455 0.00 0.00 39.39 2.69
3090 3163 3.263425 AGGTACATGGTCTGTTGTTAGGG 59.737 47.826 0.00 0.00 39.39 3.53
3091 3164 3.008704 GGTACATGGTCTGTTGTTAGGGT 59.991 47.826 0.00 0.00 39.39 4.34
3092 3165 3.140325 ACATGGTCTGTTGTTAGGGTG 57.860 47.619 0.00 0.00 32.90 4.61
3093 3166 1.812571 CATGGTCTGTTGTTAGGGTGC 59.187 52.381 0.00 0.00 0.00 5.01
3094 3167 1.136828 TGGTCTGTTGTTAGGGTGCT 58.863 50.000 0.00 0.00 0.00 4.40
3104 3196 3.278574 TGTTAGGGTGCTAATGTGATGC 58.721 45.455 0.00 0.00 0.00 3.91
3201 3293 7.504924 TTTCATGAGTACCCAAGTTTGTTAG 57.495 36.000 0.00 0.00 0.00 2.34
3316 3629 3.058983 CGCTTGCTTGATTCACTGTGTAA 60.059 43.478 7.79 1.71 0.00 2.41
3411 3724 3.430651 CCAAGTTGTTTGCATTGTCTGGT 60.431 43.478 1.45 0.00 35.37 4.00
3412 3725 4.202101 CCAAGTTGTTTGCATTGTCTGGTA 60.202 41.667 1.45 0.00 35.37 3.25
3608 3921 6.183361 TGGATGTCATCAGCATATCTGGTTTA 60.183 38.462 14.72 0.00 43.06 2.01
3763 4076 6.592994 AGCAAACTTACCGTAGTCCTTTTATC 59.407 38.462 0.00 0.00 0.00 1.75
3829 4142 2.949447 AGTGGACCAATTCAGCACTTT 58.051 42.857 0.00 0.00 0.00 2.66
3959 4273 6.043706 AGGCTACTGCTGTAAATTGGATAGAT 59.956 38.462 4.91 0.00 39.59 1.98
4175 4489 1.098050 AGGATCCTGCGCAAAATGTC 58.902 50.000 15.29 5.48 0.00 3.06
4279 4593 3.701542 GAGGTGATCCCATTTTCCTTTCC 59.298 47.826 3.45 0.00 34.66 3.13
4325 4639 9.482175 AAGTTCCTTCTCTATGTAGATTGTAGT 57.518 33.333 0.00 0.00 0.00 2.73
4354 4668 0.674895 AATCGCCAGGCTTCAGTGAC 60.675 55.000 10.54 0.00 0.00 3.67
4397 4711 8.496707 AAGTCTTTGCTGAATCATTTGTTTTT 57.503 26.923 0.00 0.00 0.00 1.94
4434 4748 6.433093 TCTGATCCGTAATTCGATCAATCCTA 59.567 38.462 11.69 0.00 42.86 2.94
4435 4749 6.988522 TGATCCGTAATTCGATCAATCCTAA 58.011 36.000 9.27 0.00 42.86 2.69
4849 5163 1.482278 CTGATTAAGCGAGCGAGTCC 58.518 55.000 0.00 0.00 0.00 3.85
4977 5292 7.767261 TGATTGTAACTTTTGTTTGTGTAGCT 58.233 30.769 0.00 0.00 43.32 3.32
5142 5491 2.238395 GTCTGGAGGAAAGGAGCTTCAT 59.762 50.000 0.00 0.00 0.00 2.57
5143 5492 3.452627 GTCTGGAGGAAAGGAGCTTCATA 59.547 47.826 0.00 0.00 0.00 2.15
5165 5514 4.990526 AGCCCCATTTCCATTATACTGAG 58.009 43.478 0.00 0.00 0.00 3.35
5231 5584 2.541233 AGCACATGGAGAGAGTACCT 57.459 50.000 0.00 0.00 0.00 3.08
5245 5598 7.506261 GGAGAGAGTACCTGTCAAAATATCCTA 59.494 40.741 9.60 0.00 36.94 2.94
5333 5687 8.239998 GCTGAGTGTAAAATCTTTTCATAAGCT 58.760 33.333 0.00 0.00 0.00 3.74
5377 5731 0.883833 CTGAGGCCAACGCAAGAAAT 59.116 50.000 5.01 0.00 43.62 2.17
5405 5759 0.523966 ACACAGCGAGAGACTAGCAC 59.476 55.000 6.63 0.00 34.63 4.40
5406 5760 0.523519 CACAGCGAGAGACTAGCACA 59.476 55.000 6.63 0.00 34.63 4.57
5407 5761 0.808125 ACAGCGAGAGACTAGCACAG 59.192 55.000 6.63 0.00 34.63 3.66
5408 5762 0.808125 CAGCGAGAGACTAGCACAGT 59.192 55.000 6.63 0.00 41.47 3.55
5409 5763 2.010497 CAGCGAGAGACTAGCACAGTA 58.990 52.381 6.63 0.00 37.72 2.74
5410 5764 2.011222 AGCGAGAGACTAGCACAGTAC 58.989 52.381 6.63 0.00 37.72 2.73
5411 5765 1.064357 GCGAGAGACTAGCACAGTACC 59.936 57.143 0.00 0.00 37.72 3.34
5412 5766 2.357075 CGAGAGACTAGCACAGTACCA 58.643 52.381 0.00 0.00 37.72 3.25
5422 5776 5.892119 ACTAGCACAGTACCACATACTACAT 59.108 40.000 0.00 0.00 42.62 2.29
5498 5852 6.402222 ACTAGCAGAATTCAGGAACAGTAAG 58.598 40.000 8.44 0.00 0.00 2.34
5569 5930 6.183361 CCAGAGAAATTTAGCCAGAGGATAGT 60.183 42.308 0.00 0.00 0.00 2.12
5577 5938 8.734593 ATTTAGCCAGAGGATAGTAGAAGAAT 57.265 34.615 0.00 0.00 0.00 2.40
5579 5940 9.656323 TTTAGCCAGAGGATAGTAGAAGAATAA 57.344 33.333 0.00 0.00 0.00 1.40
5580 5941 9.656323 TTAGCCAGAGGATAGTAGAAGAATAAA 57.344 33.333 0.00 0.00 0.00 1.40
5581 5942 8.554490 AGCCAGAGGATAGTAGAAGAATAAAA 57.446 34.615 0.00 0.00 0.00 1.52
5582 5943 8.646900 AGCCAGAGGATAGTAGAAGAATAAAAG 58.353 37.037 0.00 0.00 0.00 2.27
5583 5944 7.875554 GCCAGAGGATAGTAGAAGAATAAAAGG 59.124 40.741 0.00 0.00 0.00 3.11
5584 5945 8.929487 CCAGAGGATAGTAGAAGAATAAAAGGT 58.071 37.037 0.00 0.00 0.00 3.50
5619 5981 6.073447 TCTTCCATACAACATAACCCACAT 57.927 37.500 0.00 0.00 0.00 3.21
5732 6094 6.555463 AGATGCATTTTCATCCTCCAAATT 57.445 33.333 0.00 0.00 42.84 1.82
5814 6176 6.043411 CGGGAAAACATTTCACTTGGTTAAA 58.957 36.000 3.83 0.00 0.00 1.52
5815 6177 6.200097 CGGGAAAACATTTCACTTGGTTAAAG 59.800 38.462 3.83 0.00 42.07 1.85
5816 6178 6.481976 GGGAAAACATTTCACTTGGTTAAAGG 59.518 38.462 5.32 0.00 40.51 3.11
5817 6179 6.018262 GGAAAACATTTCACTTGGTTAAAGGC 60.018 38.462 5.32 0.00 40.51 4.35
5818 6180 4.600692 ACATTTCACTTGGTTAAAGGCC 57.399 40.909 0.00 0.00 40.51 5.19
5819 6181 3.964031 ACATTTCACTTGGTTAAAGGCCA 59.036 39.130 5.01 0.00 40.51 5.36
5820 6182 4.592778 ACATTTCACTTGGTTAAAGGCCAT 59.407 37.500 5.01 0.00 40.51 4.40
5821 6183 5.777732 ACATTTCACTTGGTTAAAGGCCATA 59.222 36.000 5.01 0.00 40.51 2.74
5822 6184 5.715434 TTTCACTTGGTTAAAGGCCATAC 57.285 39.130 5.01 0.00 40.51 2.39
5823 6185 4.374689 TCACTTGGTTAAAGGCCATACA 57.625 40.909 5.01 0.00 40.51 2.29
5824 6186 4.331968 TCACTTGGTTAAAGGCCATACAG 58.668 43.478 5.01 0.00 40.51 2.74
5825 6187 3.089284 ACTTGGTTAAAGGCCATACAGC 58.911 45.455 5.01 0.00 40.51 4.40
5834 6196 3.106738 GCCATACAGCCATTCTGCT 57.893 52.632 0.00 0.00 46.76 4.24
5835 6197 0.950116 GCCATACAGCCATTCTGCTC 59.050 55.000 0.00 0.00 46.76 4.26
5836 6198 1.748244 GCCATACAGCCATTCTGCTCA 60.748 52.381 0.00 0.00 46.76 4.26
5837 6199 2.646930 CCATACAGCCATTCTGCTCAA 58.353 47.619 0.00 0.00 46.76 3.02
5838 6200 3.220110 CCATACAGCCATTCTGCTCAAT 58.780 45.455 0.00 0.00 46.76 2.57
5839 6201 3.252701 CCATACAGCCATTCTGCTCAATC 59.747 47.826 0.00 0.00 46.76 2.67
5840 6202 2.803030 ACAGCCATTCTGCTCAATCT 57.197 45.000 0.00 0.00 46.76 2.40
5841 6203 3.920231 ACAGCCATTCTGCTCAATCTA 57.080 42.857 0.00 0.00 46.76 1.98
5842 6204 4.434545 ACAGCCATTCTGCTCAATCTAT 57.565 40.909 0.00 0.00 46.76 1.98
5843 6205 4.135306 ACAGCCATTCTGCTCAATCTATG 58.865 43.478 0.00 0.00 46.76 2.23
5844 6206 4.141551 ACAGCCATTCTGCTCAATCTATGA 60.142 41.667 0.00 0.00 46.76 2.15
5845 6207 4.820173 CAGCCATTCTGCTCAATCTATGAA 59.180 41.667 0.00 0.00 40.32 2.57
5846 6208 5.298527 CAGCCATTCTGCTCAATCTATGAAA 59.701 40.000 0.00 0.00 40.32 2.69
5847 6209 6.016192 CAGCCATTCTGCTCAATCTATGAAAT 60.016 38.462 0.00 0.00 40.32 2.17
5848 6210 6.016192 AGCCATTCTGCTCAATCTATGAAATG 60.016 38.462 0.00 0.00 36.75 2.32
5849 6211 6.150318 CCATTCTGCTCAATCTATGAAATGC 58.850 40.000 0.00 0.00 37.67 3.56
5850 6212 5.762825 TTCTGCTCAATCTATGAAATGCC 57.237 39.130 0.00 0.00 37.67 4.40
5851 6213 4.784177 TCTGCTCAATCTATGAAATGCCA 58.216 39.130 0.00 0.00 37.67 4.92
5852 6214 4.820173 TCTGCTCAATCTATGAAATGCCAG 59.180 41.667 0.00 0.00 37.67 4.85
5853 6215 4.529897 TGCTCAATCTATGAAATGCCAGT 58.470 39.130 0.00 0.00 37.67 4.00
5854 6216 4.337274 TGCTCAATCTATGAAATGCCAGTG 59.663 41.667 0.00 0.00 37.67 3.66
5855 6217 4.577693 GCTCAATCTATGAAATGCCAGTGA 59.422 41.667 0.00 0.00 37.67 3.41
5856 6218 5.066893 GCTCAATCTATGAAATGCCAGTGAA 59.933 40.000 0.00 0.00 37.67 3.18
5857 6219 6.441093 TCAATCTATGAAATGCCAGTGAAC 57.559 37.500 0.00 0.00 34.30 3.18
5858 6220 5.945191 TCAATCTATGAAATGCCAGTGAACA 59.055 36.000 0.00 0.00 34.30 3.18
5859 6221 5.824904 ATCTATGAAATGCCAGTGAACAC 57.175 39.130 0.00 0.00 0.00 3.32
5860 6222 4.910195 TCTATGAAATGCCAGTGAACACT 58.090 39.130 1.32 1.32 43.61 3.55
5874 6236 6.773976 AGTGAACACTGGATCTTTCAAAAA 57.226 33.333 6.67 0.00 40.75 1.94
6010 6372 5.477510 TGCAATCAAAATCGTGCCTAAAAT 58.522 33.333 0.00 0.00 36.12 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.369692 CGCCTACACACACCCAAGA 59.630 57.895 0.00 0.00 0.00 3.02
1 2 2.325082 GCGCCTACACACACCCAAG 61.325 63.158 0.00 0.00 0.00 3.61
2 3 2.281208 GCGCCTACACACACCCAA 60.281 61.111 0.00 0.00 0.00 4.12
3 4 4.673298 CGCGCCTACACACACCCA 62.673 66.667 0.00 0.00 0.00 4.51
4 5 3.659089 ATCGCGCCTACACACACCC 62.659 63.158 0.00 0.00 0.00 4.61
5 6 1.296056 AAATCGCGCCTACACACACC 61.296 55.000 0.00 0.00 0.00 4.16
6 7 0.515564 AAAATCGCGCCTACACACAC 59.484 50.000 0.00 0.00 0.00 3.82
7 8 0.515127 CAAAATCGCGCCTACACACA 59.485 50.000 0.00 0.00 0.00 3.72
8 9 0.515564 ACAAAATCGCGCCTACACAC 59.484 50.000 0.00 0.00 0.00 3.82
9 10 1.069568 CAACAAAATCGCGCCTACACA 60.070 47.619 0.00 0.00 0.00 3.72
10 11 1.069500 ACAACAAAATCGCGCCTACAC 60.069 47.619 0.00 0.00 0.00 2.90
11 12 1.231221 ACAACAAAATCGCGCCTACA 58.769 45.000 0.00 0.00 0.00 2.74
12 13 2.325509 AACAACAAAATCGCGCCTAC 57.674 45.000 0.00 0.00 0.00 3.18
13 14 3.003897 AGAAAACAACAAAATCGCGCCTA 59.996 39.130 0.00 0.00 0.00 3.93
14 15 2.124122 GAAAACAACAAAATCGCGCCT 58.876 42.857 0.00 0.00 0.00 5.52
15 16 2.124122 AGAAAACAACAAAATCGCGCC 58.876 42.857 0.00 0.00 0.00 6.53
16 17 3.972502 AGTAGAAAACAACAAAATCGCGC 59.027 39.130 0.00 0.00 0.00 6.86
17 18 5.277449 CGTAGTAGAAAACAACAAAATCGCG 59.723 40.000 0.00 0.00 0.00 5.87
18 19 6.131389 ACGTAGTAGAAAACAACAAAATCGC 58.869 36.000 0.00 0.00 41.94 4.58
19 20 7.319615 GGAACGTAGTAGAAAACAACAAAATCG 59.680 37.037 0.00 0.00 45.00 3.34
20 21 7.588854 GGGAACGTAGTAGAAAACAACAAAATC 59.411 37.037 0.00 0.00 45.00 2.17
21 22 7.420002 GGGAACGTAGTAGAAAACAACAAAAT 58.580 34.615 0.00 0.00 45.00 1.82
22 23 6.183360 GGGGAACGTAGTAGAAAACAACAAAA 60.183 38.462 0.00 0.00 45.00 2.44
23 24 5.296531 GGGGAACGTAGTAGAAAACAACAAA 59.703 40.000 0.00 0.00 45.00 2.83
24 25 4.815846 GGGGAACGTAGTAGAAAACAACAA 59.184 41.667 0.00 0.00 45.00 2.83
25 26 4.141756 TGGGGAACGTAGTAGAAAACAACA 60.142 41.667 0.00 0.00 45.00 3.33
26 27 4.379652 TGGGGAACGTAGTAGAAAACAAC 58.620 43.478 0.00 0.00 45.00 3.32
27 28 4.686191 TGGGGAACGTAGTAGAAAACAA 57.314 40.909 0.00 0.00 45.00 2.83
28 29 4.141756 TGTTGGGGAACGTAGTAGAAAACA 60.142 41.667 0.00 0.00 45.00 2.83
29 30 4.379652 TGTTGGGGAACGTAGTAGAAAAC 58.620 43.478 0.00 0.00 45.00 2.43
30 31 4.503643 CCTGTTGGGGAACGTAGTAGAAAA 60.504 45.833 0.00 0.00 45.00 2.29
31 32 3.007182 CCTGTTGGGGAACGTAGTAGAAA 59.993 47.826 0.00 0.00 45.00 2.52
32 33 2.564062 CCTGTTGGGGAACGTAGTAGAA 59.436 50.000 0.00 0.00 45.00 2.10
33 34 2.173519 CCTGTTGGGGAACGTAGTAGA 58.826 52.381 0.00 0.00 45.00 2.59
34 35 2.667473 CCTGTTGGGGAACGTAGTAG 57.333 55.000 0.00 0.00 45.00 2.57
52 53 3.468140 GACCCGACAGGCCTACCC 61.468 72.222 3.98 0.00 40.58 3.69
53 54 3.468140 GGACCCGACAGGCCTACC 61.468 72.222 3.98 0.00 40.58 3.18
54 55 3.834799 CGGACCCGACAGGCCTAC 61.835 72.222 3.98 1.24 42.83 3.18
55 56 4.051167 TCGGACCCGACAGGCCTA 62.051 66.667 3.98 0.00 44.01 3.93
65 66 4.368543 GTCCACCACGTCGGACCC 62.369 72.222 14.66 0.00 45.03 4.46
85 86 1.003233 GATAAGAGGATGCCCGGGC 60.003 63.158 39.40 39.40 42.35 6.13
86 87 0.322975 CAGATAAGAGGATGCCCGGG 59.677 60.000 19.09 19.09 37.58 5.73
87 88 0.321122 GCAGATAAGAGGATGCCCGG 60.321 60.000 0.00 0.00 37.58 5.73
88 89 0.683973 AGCAGATAAGAGGATGCCCG 59.316 55.000 0.00 0.00 39.51 6.13
89 90 2.105477 TGAAGCAGATAAGAGGATGCCC 59.895 50.000 0.00 0.00 39.51 5.36
90 91 3.482156 TGAAGCAGATAAGAGGATGCC 57.518 47.619 0.00 0.00 39.51 4.40
91 92 6.388435 AAAATGAAGCAGATAAGAGGATGC 57.612 37.500 0.00 0.00 38.97 3.91
92 93 7.201145 CCAAAAATGAAGCAGATAAGAGGATG 58.799 38.462 0.00 0.00 0.00 3.51
93 94 6.323225 CCCAAAAATGAAGCAGATAAGAGGAT 59.677 38.462 0.00 0.00 0.00 3.24
94 95 5.653769 CCCAAAAATGAAGCAGATAAGAGGA 59.346 40.000 0.00 0.00 0.00 3.71
95 96 5.680665 GCCCAAAAATGAAGCAGATAAGAGG 60.681 44.000 0.00 0.00 0.00 3.69
96 97 5.126707 AGCCCAAAAATGAAGCAGATAAGAG 59.873 40.000 0.00 0.00 0.00 2.85
97 98 5.018809 AGCCCAAAAATGAAGCAGATAAGA 58.981 37.500 0.00 0.00 0.00 2.10
98 99 5.107133 CAGCCCAAAAATGAAGCAGATAAG 58.893 41.667 0.00 0.00 0.00 1.73
99 100 4.081531 CCAGCCCAAAAATGAAGCAGATAA 60.082 41.667 0.00 0.00 0.00 1.75
100 101 3.448301 CCAGCCCAAAAATGAAGCAGATA 59.552 43.478 0.00 0.00 0.00 1.98
101 102 2.235402 CCAGCCCAAAAATGAAGCAGAT 59.765 45.455 0.00 0.00 0.00 2.90
102 103 1.619827 CCAGCCCAAAAATGAAGCAGA 59.380 47.619 0.00 0.00 0.00 4.26
103 104 1.619827 TCCAGCCCAAAAATGAAGCAG 59.380 47.619 0.00 0.00 0.00 4.24
104 105 1.714541 TCCAGCCCAAAAATGAAGCA 58.285 45.000 0.00 0.00 0.00 3.91
105 106 4.099881 TCATATCCAGCCCAAAAATGAAGC 59.900 41.667 0.00 0.00 0.00 3.86
106 107 5.221382 CCTCATATCCAGCCCAAAAATGAAG 60.221 44.000 0.00 0.00 0.00 3.02
107 108 4.650588 CCTCATATCCAGCCCAAAAATGAA 59.349 41.667 0.00 0.00 0.00 2.57
108 109 4.079269 TCCTCATATCCAGCCCAAAAATGA 60.079 41.667 0.00 0.00 0.00 2.57
109 110 4.217510 TCCTCATATCCAGCCCAAAAATG 58.782 43.478 0.00 0.00 0.00 2.32
110 111 4.078980 ACTCCTCATATCCAGCCCAAAAAT 60.079 41.667 0.00 0.00 0.00 1.82
111 112 3.269381 ACTCCTCATATCCAGCCCAAAAA 59.731 43.478 0.00 0.00 0.00 1.94
112 113 2.852449 ACTCCTCATATCCAGCCCAAAA 59.148 45.455 0.00 0.00 0.00 2.44
113 114 2.173356 CACTCCTCATATCCAGCCCAAA 59.827 50.000 0.00 0.00 0.00 3.28
114 115 1.770658 CACTCCTCATATCCAGCCCAA 59.229 52.381 0.00 0.00 0.00 4.12
115 116 1.427809 CACTCCTCATATCCAGCCCA 58.572 55.000 0.00 0.00 0.00 5.36
116 117 0.036022 GCACTCCTCATATCCAGCCC 59.964 60.000 0.00 0.00 0.00 5.19
117 118 0.036022 GGCACTCCTCATATCCAGCC 59.964 60.000 0.00 0.00 0.00 4.85
118 119 0.320247 CGGCACTCCTCATATCCAGC 60.320 60.000 0.00 0.00 0.00 4.85
119 120 0.319728 CCGGCACTCCTCATATCCAG 59.680 60.000 0.00 0.00 0.00 3.86
120 121 0.398522 ACCGGCACTCCTCATATCCA 60.399 55.000 0.00 0.00 0.00 3.41
121 122 0.318762 GACCGGCACTCCTCATATCC 59.681 60.000 0.00 0.00 0.00 2.59
122 123 1.040646 TGACCGGCACTCCTCATATC 58.959 55.000 0.00 0.00 0.00 1.63
123 124 1.139058 GTTGACCGGCACTCCTCATAT 59.861 52.381 0.00 0.00 0.00 1.78
124 125 0.535335 GTTGACCGGCACTCCTCATA 59.465 55.000 0.00 0.00 0.00 2.15
125 126 1.296715 GTTGACCGGCACTCCTCAT 59.703 57.895 0.00 0.00 0.00 2.90
126 127 2.741092 GTTGACCGGCACTCCTCA 59.259 61.111 0.00 0.00 0.00 3.86
127 128 2.047179 GGTTGACCGGCACTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
128 129 3.637273 GGGTTGACCGGCACTCCT 61.637 66.667 0.00 0.00 36.71 3.69
137 138 2.735857 CGAACGTCCGGGTTGACC 60.736 66.667 0.00 0.00 31.35 4.02
138 139 1.731969 CTCGAACGTCCGGGTTGAC 60.732 63.158 0.00 0.00 0.00 3.18
139 140 2.646719 CTCGAACGTCCGGGTTGA 59.353 61.111 0.00 0.00 0.00 3.18
140 141 2.431942 CCTCGAACGTCCGGGTTG 60.432 66.667 0.00 0.00 0.00 3.77
141 142 2.914097 ACCTCGAACGTCCGGGTT 60.914 61.111 0.00 0.00 32.07 4.11
142 143 3.368571 GACCTCGAACGTCCGGGT 61.369 66.667 7.03 7.03 36.37 5.28
143 144 4.125695 GGACCTCGAACGTCCGGG 62.126 72.222 13.90 0.00 40.46 5.73
147 148 1.993370 CTCAAATGGACCTCGAACGTC 59.007 52.381 4.13 4.13 0.00 4.34
148 149 1.337823 CCTCAAATGGACCTCGAACGT 60.338 52.381 0.00 0.00 0.00 3.99
160 161 1.081892 CCAGACAGACGCCTCAAATG 58.918 55.000 0.00 0.00 0.00 2.32
161 162 0.036010 CCCAGACAGACGCCTCAAAT 60.036 55.000 0.00 0.00 0.00 2.32
169 170 2.080286 AAAATCGACCCAGACAGACG 57.920 50.000 0.00 0.00 0.00 4.18
207 210 3.497332 TCGACTTATGGCCAGCTATACT 58.503 45.455 13.05 0.00 0.00 2.12
213 216 2.596904 TAGTTCGACTTATGGCCAGC 57.403 50.000 13.05 0.00 0.00 4.85
228 231 2.763902 GGCCTGGCCTGGTTAGTT 59.236 61.111 30.42 0.00 46.69 2.24
239 242 3.313524 GGGCTTTGTTGGGCCTGG 61.314 66.667 4.53 0.00 46.80 4.45
244 247 4.362476 GCTGCGGGCTTTGTTGGG 62.362 66.667 0.00 0.00 38.06 4.12
246 249 0.809241 TTTTGCTGCGGGCTTTGTTG 60.809 50.000 0.00 0.00 42.39 3.33
249 252 4.434685 TTTTTGCTGCGGGCTTTG 57.565 50.000 0.00 0.00 42.39 2.77
268 271 2.599757 GGTCGGTTTAGGCCTGGGT 61.600 63.158 17.99 0.00 32.02 4.51
270 273 0.463833 GATGGTCGGTTTAGGCCTGG 60.464 60.000 17.99 0.00 36.69 4.45
271 274 0.810031 CGATGGTCGGTTTAGGCCTG 60.810 60.000 17.99 0.00 36.69 4.85
272 275 1.520666 CGATGGTCGGTTTAGGCCT 59.479 57.895 11.78 11.78 36.69 5.19
282 285 0.393077 AAATCTAGGCCCGATGGTCG 59.607 55.000 0.00 0.00 42.85 4.79
283 286 1.416401 TGAAATCTAGGCCCGATGGTC 59.584 52.381 0.00 4.56 36.05 4.02
284 287 1.417890 CTGAAATCTAGGCCCGATGGT 59.582 52.381 0.00 0.00 0.00 3.55
285 288 1.694150 TCTGAAATCTAGGCCCGATGG 59.306 52.381 0.00 0.00 0.00 3.51
286 289 2.548920 GGTCTGAAATCTAGGCCCGATG 60.549 54.545 0.00 0.00 33.79 3.84
287 290 1.694696 GGTCTGAAATCTAGGCCCGAT 59.305 52.381 0.00 0.00 33.79 4.18
316 319 1.278699 TGGGCTTTTTCATTGATGGGC 59.721 47.619 0.00 0.00 0.00 5.36
345 348 1.537814 TAAGAAAGCGGCCCGACTCA 61.538 55.000 7.68 0.00 0.00 3.41
347 350 0.035739 TTTAAGAAAGCGGCCCGACT 59.964 50.000 7.68 0.00 0.00 4.18
349 352 0.876399 GTTTTAAGAAAGCGGCCCGA 59.124 50.000 7.68 0.00 0.00 5.14
351 354 1.338655 TGTGTTTTAAGAAAGCGGCCC 59.661 47.619 0.00 0.00 0.00 5.80
353 356 6.669741 GCATATTTGTGTTTTAAGAAAGCGGC 60.670 38.462 0.00 0.00 0.00 6.53
368 371 2.896168 CTTGGGCTTGGCATATTTGTG 58.104 47.619 0.00 0.00 0.00 3.33
369 372 1.207811 GCTTGGGCTTGGCATATTTGT 59.792 47.619 0.00 0.00 35.22 2.83
413 416 0.961753 GGCCCAAGTTTTGAGTCTGG 59.038 55.000 0.00 0.00 0.00 3.86
417 420 1.115326 GCTGGGCCCAAGTTTTGAGT 61.115 55.000 28.29 0.00 0.00 3.41
471 475 1.590792 GTCCGGTCGAAATAGCCCG 60.591 63.158 0.00 3.09 40.12 6.13
472 476 1.227468 GGTCCGGTCGAAATAGCCC 60.227 63.158 0.00 0.00 0.00 5.19
473 477 1.590792 CGGTCCGGTCGAAATAGCC 60.591 63.158 13.11 0.00 0.00 3.93
474 478 1.590792 CCGGTCCGGTCGAAATAGC 60.591 63.158 23.02 0.00 42.73 2.97
475 479 1.066918 CCCGGTCCGGTCGAAATAG 59.933 63.158 28.39 7.05 46.80 1.73
476 480 1.257055 AACCCGGTCCGGTCGAAATA 61.257 55.000 28.39 0.00 46.80 1.40
477 481 2.115734 AAACCCGGTCCGGTCGAAAT 62.116 55.000 28.39 6.04 46.80 2.17
478 482 2.322638 AAAACCCGGTCCGGTCGAAA 62.323 55.000 28.39 0.00 46.80 3.46
479 483 2.713927 GAAAACCCGGTCCGGTCGAA 62.714 60.000 28.39 0.00 46.80 3.71
480 484 3.225069 GAAAACCCGGTCCGGTCGA 62.225 63.158 28.39 0.00 46.80 4.20
481 485 2.739671 GAAAACCCGGTCCGGTCG 60.740 66.667 28.39 16.69 46.80 4.79
482 486 1.002990 ATGAAAACCCGGTCCGGTC 60.003 57.895 28.39 19.16 46.80 4.79
483 487 1.302993 CATGAAAACCCGGTCCGGT 60.303 57.895 28.39 14.06 46.80 5.28
485 489 2.696759 GCCATGAAAACCCGGTCCG 61.697 63.158 3.60 3.60 0.00 4.79
486 490 2.348104 GGCCATGAAAACCCGGTCC 61.348 63.158 0.00 0.00 0.00 4.46
487 491 1.595093 CTGGCCATGAAAACCCGGTC 61.595 60.000 5.51 0.00 0.00 4.79
488 492 1.606313 CTGGCCATGAAAACCCGGT 60.606 57.895 5.51 0.00 0.00 5.28
489 493 2.350458 CCTGGCCATGAAAACCCGG 61.350 63.158 5.51 0.00 0.00 5.73
490 494 0.322997 TACCTGGCCATGAAAACCCG 60.323 55.000 15.66 0.00 0.00 5.28
491 495 1.756538 CATACCTGGCCATGAAAACCC 59.243 52.381 15.66 0.00 0.00 4.11
492 496 1.756538 CCATACCTGGCCATGAAAACC 59.243 52.381 15.66 0.00 35.23 3.27
520 526 2.670592 AAAAGCCCGTGCGTACCC 60.671 61.111 0.00 0.00 44.33 3.69
521 527 1.908066 CTCAAAAGCCCGTGCGTACC 61.908 60.000 0.00 0.00 44.33 3.34
524 530 2.978010 CCTCAAAAGCCCGTGCGT 60.978 61.111 0.00 0.00 44.33 5.24
525 531 3.737172 CCCTCAAAAGCCCGTGCG 61.737 66.667 0.00 0.00 44.33 5.34
528 534 2.774633 AACCCCCTCAAAAGCCCGT 61.775 57.895 0.00 0.00 0.00 5.28
544 550 0.251787 AATCTTCCCAGCACCCCAAC 60.252 55.000 0.00 0.00 0.00 3.77
554 560 0.965439 CGGCCAAAACAATCTTCCCA 59.035 50.000 2.24 0.00 0.00 4.37
555 561 1.067846 GTCGGCCAAAACAATCTTCCC 60.068 52.381 2.24 0.00 0.00 3.97
568 595 1.043116 CCTCCTAGACATGTCGGCCA 61.043 60.000 19.85 6.30 34.09 5.36
578 605 1.380112 AGTCCACGGCCTCCTAGAC 60.380 63.158 0.00 0.39 0.00 2.59
581 608 2.363795 CCAGTCCACGGCCTCCTA 60.364 66.667 0.00 0.00 0.00 2.94
588 615 0.944386 CAAACAGAACCAGTCCACGG 59.056 55.000 0.00 0.00 0.00 4.94
589 616 0.307760 GCAAACAGAACCAGTCCACG 59.692 55.000 0.00 0.00 0.00 4.94
597 624 1.734465 CGAGAGATGGCAAACAGAACC 59.266 52.381 0.00 0.00 0.00 3.62
598 625 2.413453 GACGAGAGATGGCAAACAGAAC 59.587 50.000 0.00 0.00 0.00 3.01
813 851 1.003718 GGAAGAGTGGTCGGTTGGG 60.004 63.158 0.00 0.00 0.00 4.12
1515 1557 1.179174 TGGCCTCATAGTCGATCCCG 61.179 60.000 3.32 0.00 37.07 5.14
1743 1785 2.344872 GGTAACTTGACGGCGGGT 59.655 61.111 13.24 1.20 0.00 5.28
1957 1999 4.256110 CAATCACCTGACTACATGCAGAA 58.744 43.478 0.00 0.00 34.06 3.02
1958 2000 3.865446 CAATCACCTGACTACATGCAGA 58.135 45.455 0.00 0.00 34.06 4.26
2201 2254 4.170256 GAGGTTTGAAGAAACGCAAAACA 58.830 39.130 0.00 0.00 42.57 2.83
2202 2255 3.239712 CGAGGTTTGAAGAAACGCAAAAC 59.760 43.478 0.00 0.00 42.20 2.43
2311 2384 0.878961 GACACTTTGTCGCCGTTCCT 60.879 55.000 0.00 0.00 37.67 3.36
2464 2537 1.129326 CGACACACGTTTGAGGAGAC 58.871 55.000 9.03 0.00 37.22 3.36
2465 2538 0.031585 CCGACACACGTTTGAGGAGA 59.968 55.000 9.03 0.00 40.78 3.71
2466 2539 0.249322 ACCGACACACGTTTGAGGAG 60.249 55.000 21.22 6.24 40.78 3.69
2467 2540 0.176219 AACCGACACACGTTTGAGGA 59.824 50.000 21.22 0.00 40.78 3.71
2468 2541 1.011333 AAACCGACACACGTTTGAGG 58.989 50.000 9.03 13.11 40.78 3.86
2469 2542 2.700694 GAAAACCGACACACGTTTGAG 58.299 47.619 9.03 2.02 40.78 3.02
2470 2543 1.060842 CGAAAACCGACACACGTTTGA 59.939 47.619 9.03 0.00 41.76 2.69
2471 2544 1.448722 CGAAAACCGACACACGTTTG 58.551 50.000 0.00 0.00 41.76 2.93
2472 2545 0.247775 GCGAAAACCGACACACGTTT 60.248 50.000 0.00 0.00 41.76 3.60
2473 2546 1.085501 AGCGAAAACCGACACACGTT 61.086 50.000 0.00 0.00 41.76 3.99
2474 2547 1.085501 AAGCGAAAACCGACACACGT 61.086 50.000 0.00 0.00 41.76 4.49
2475 2548 0.382636 GAAGCGAAAACCGACACACG 60.383 55.000 0.00 0.00 41.76 4.49
2476 2549 0.935196 AGAAGCGAAAACCGACACAC 59.065 50.000 0.00 0.00 41.76 3.82
2477 2550 1.329292 CAAGAAGCGAAAACCGACACA 59.671 47.619 0.00 0.00 41.76 3.72
2478 2551 1.595794 TCAAGAAGCGAAAACCGACAC 59.404 47.619 0.00 0.00 41.76 3.67
2479 2552 1.942677 TCAAGAAGCGAAAACCGACA 58.057 45.000 0.00 0.00 41.76 4.35
2480 2553 3.537793 ATTCAAGAAGCGAAAACCGAC 57.462 42.857 0.00 0.00 41.76 4.79
2481 2554 4.561735 AAATTCAAGAAGCGAAAACCGA 57.438 36.364 0.00 0.00 41.76 4.69
2482 2555 6.140110 TCTAAAATTCAAGAAGCGAAAACCG 58.860 36.000 0.00 0.00 42.21 4.44
2483 2556 6.582672 CCTCTAAAATTCAAGAAGCGAAAACC 59.417 38.462 0.00 0.00 0.00 3.27
2484 2557 7.360361 TCCTCTAAAATTCAAGAAGCGAAAAC 58.640 34.615 0.00 0.00 0.00 2.43
2485 2558 7.504924 TCCTCTAAAATTCAAGAAGCGAAAA 57.495 32.000 0.00 0.00 0.00 2.29
2486 2559 7.607991 AGATCCTCTAAAATTCAAGAAGCGAAA 59.392 33.333 0.00 0.00 0.00 3.46
2487 2560 7.065085 CAGATCCTCTAAAATTCAAGAAGCGAA 59.935 37.037 0.00 0.00 0.00 4.70
2488 2561 6.536582 CAGATCCTCTAAAATTCAAGAAGCGA 59.463 38.462 0.00 0.00 0.00 4.93
2489 2562 6.536582 TCAGATCCTCTAAAATTCAAGAAGCG 59.463 38.462 0.00 0.00 0.00 4.68
2490 2563 7.856145 TCAGATCCTCTAAAATTCAAGAAGC 57.144 36.000 0.00 0.00 0.00 3.86
2499 2572 9.690913 TGACATCAATTTCAGATCCTCTAAAAT 57.309 29.630 0.00 0.00 0.00 1.82
2500 2573 9.690913 ATGACATCAATTTCAGATCCTCTAAAA 57.309 29.630 0.00 0.00 0.00 1.52
2501 2574 9.334947 GATGACATCAATTTCAGATCCTCTAAA 57.665 33.333 10.67 0.00 0.00 1.85
2502 2575 8.712103 AGATGACATCAATTTCAGATCCTCTAA 58.288 33.333 17.57 0.00 0.00 2.10
2503 2576 8.260099 AGATGACATCAATTTCAGATCCTCTA 57.740 34.615 17.57 0.00 0.00 2.43
2504 2577 7.139287 AGATGACATCAATTTCAGATCCTCT 57.861 36.000 17.57 0.00 0.00 3.69
2505 2578 7.282675 ACAAGATGACATCAATTTCAGATCCTC 59.717 37.037 17.57 0.00 0.00 3.71
2506 2579 7.067129 CACAAGATGACATCAATTTCAGATCCT 59.933 37.037 17.57 0.00 0.00 3.24
2507 2580 7.194278 CACAAGATGACATCAATTTCAGATCC 58.806 38.462 17.57 0.00 0.00 3.36
2508 2581 6.691818 GCACAAGATGACATCAATTTCAGATC 59.308 38.462 17.57 0.00 0.00 2.75
2509 2582 6.152154 TGCACAAGATGACATCAATTTCAGAT 59.848 34.615 17.57 0.00 0.00 2.90
2510 2583 5.474189 TGCACAAGATGACATCAATTTCAGA 59.526 36.000 17.57 0.00 0.00 3.27
2511 2584 5.571741 GTGCACAAGATGACATCAATTTCAG 59.428 40.000 17.57 2.30 0.00 3.02
2512 2585 5.242171 AGTGCACAAGATGACATCAATTTCA 59.758 36.000 21.04 6.86 0.00 2.69
2513 2586 5.706916 AGTGCACAAGATGACATCAATTTC 58.293 37.500 21.04 4.51 0.00 2.17
2514 2587 5.717078 AGTGCACAAGATGACATCAATTT 57.283 34.783 21.04 0.58 0.00 1.82
2515 2588 5.717078 AAGTGCACAAGATGACATCAATT 57.283 34.783 21.04 1.30 0.00 2.32
2516 2589 5.717078 AAAGTGCACAAGATGACATCAAT 57.283 34.783 21.04 3.23 0.00 2.57
2517 2590 6.631971 TTAAAGTGCACAAGATGACATCAA 57.368 33.333 21.04 0.00 0.00 2.57
2518 2591 6.437928 GTTTAAAGTGCACAAGATGACATCA 58.562 36.000 21.04 0.00 0.00 3.07
2519 2592 5.858581 GGTTTAAAGTGCACAAGATGACATC 59.141 40.000 21.04 7.39 0.00 3.06
2520 2593 5.562696 CGGTTTAAAGTGCACAAGATGACAT 60.563 40.000 21.04 0.00 0.00 3.06
2521 2594 4.260990 CGGTTTAAAGTGCACAAGATGACA 60.261 41.667 21.04 0.00 0.00 3.58
2522 2595 4.219033 CGGTTTAAAGTGCACAAGATGAC 58.781 43.478 21.04 9.86 0.00 3.06
2523 2596 3.880490 ACGGTTTAAAGTGCACAAGATGA 59.120 39.130 21.04 0.00 0.00 2.92
2524 2597 4.223320 ACGGTTTAAAGTGCACAAGATG 57.777 40.909 21.04 3.30 0.00 2.90
2525 2598 4.911514 AACGGTTTAAAGTGCACAAGAT 57.088 36.364 21.04 4.26 0.00 2.40
2526 2599 4.260866 GCTAACGGTTTAAAGTGCACAAGA 60.261 41.667 21.04 0.00 0.00 3.02
2527 2600 3.972502 GCTAACGGTTTAAAGTGCACAAG 59.027 43.478 21.04 3.21 0.00 3.16
2528 2601 3.377485 TGCTAACGGTTTAAAGTGCACAA 59.623 39.130 21.04 1.11 0.00 3.33
2529 2602 2.943690 TGCTAACGGTTTAAAGTGCACA 59.056 40.909 21.04 0.00 0.00 4.57
2530 2603 3.612472 TGCTAACGGTTTAAAGTGCAC 57.388 42.857 9.40 9.40 0.00 4.57
2531 2604 3.566322 ACATGCTAACGGTTTAAAGTGCA 59.434 39.130 0.00 1.80 0.00 4.57
2532 2605 3.911964 CACATGCTAACGGTTTAAAGTGC 59.088 43.478 0.00 0.00 0.00 4.40
2533 2606 3.911964 GCACATGCTAACGGTTTAAAGTG 59.088 43.478 0.00 4.06 38.21 3.16
2534 2607 4.155310 GCACATGCTAACGGTTTAAAGT 57.845 40.909 0.00 0.00 38.21 2.66
2548 2621 1.502163 GAGGATACGCCAGCACATGC 61.502 60.000 0.00 0.00 46.39 4.06
2549 2622 0.105593 AGAGGATACGCCAGCACATG 59.894 55.000 0.00 0.00 46.39 3.21
2550 2623 0.833287 AAGAGGATACGCCAGCACAT 59.167 50.000 0.00 0.00 46.39 3.21
2551 2624 0.613260 AAAGAGGATACGCCAGCACA 59.387 50.000 0.00 0.00 46.39 4.57
2589 2662 4.242475 TGAACCGACAGAACATATGTGAC 58.758 43.478 9.63 7.13 0.00 3.67
2610 2683 2.015736 AGCTGAGTCTAAACGCCATG 57.984 50.000 0.00 0.00 0.00 3.66
2906 2979 2.837591 TGACCTAAGCTAACATCTGCCA 59.162 45.455 0.00 0.00 0.00 4.92
3070 3143 4.000988 CACCCTAACAACAGACCATGTAC 58.999 47.826 0.00 0.00 43.00 2.90
3089 3162 1.747355 AGCAAGCATCACATTAGCACC 59.253 47.619 0.00 0.00 0.00 5.01
3090 3163 2.793933 CAGCAAGCATCACATTAGCAC 58.206 47.619 0.00 0.00 0.00 4.40
3091 3164 1.133598 GCAGCAAGCATCACATTAGCA 59.866 47.619 0.00 0.00 44.79 3.49
3092 3165 1.836383 GCAGCAAGCATCACATTAGC 58.164 50.000 0.00 0.00 44.79 3.09
3104 3196 2.029649 ACATTAGCACCAAAGCAGCAAG 60.030 45.455 0.00 0.00 36.85 4.01
3201 3293 9.413734 AGCCATGGAATATAATAAATAAGAGGC 57.586 33.333 18.40 0.00 0.00 4.70
3411 3724 6.938596 CCAAATCTGCTTGATCTGTGGATATA 59.061 38.462 0.00 0.00 35.33 0.86
3412 3725 5.768662 CCAAATCTGCTTGATCTGTGGATAT 59.231 40.000 0.00 0.00 35.33 1.63
3608 3921 4.462483 TCACAGTTTGCAAGGAAAGAGTTT 59.538 37.500 0.00 0.00 0.00 2.66
3829 4142 4.671207 TGGGTACTACTATACATCCAGGGA 59.329 45.833 0.00 0.00 0.00 4.20
3959 4273 0.953471 CAACAGATTTCCCGCGACCA 60.953 55.000 8.23 0.00 0.00 4.02
4175 4489 1.136141 GTGATGCACTGTGAGCTTTCG 60.136 52.381 12.86 0.00 0.00 3.46
4279 4593 4.946157 ACTTGATTCCAGCTACCAAGAATG 59.054 41.667 15.12 1.10 38.02 2.67
4325 4639 0.108186 CCTGGCGATTACAGACTGCA 60.108 55.000 1.25 0.00 38.20 4.41
4371 4685 9.598517 AAAAACAAATGATTCAGCAAAGACTTA 57.401 25.926 0.00 0.00 0.00 2.24
4397 4711 3.937814 ACGGATCAGAAAGCATAACACA 58.062 40.909 0.00 0.00 0.00 3.72
4481 4795 6.485313 TGTACCAACCTGAGAAATACAAACTG 59.515 38.462 0.00 0.00 0.00 3.16
4587 4901 2.744202 CAAAAGTCTAGCATTCGCACCT 59.256 45.455 0.00 0.00 42.27 4.00
4590 4904 1.468520 GCCAAAAGTCTAGCATTCGCA 59.531 47.619 0.00 0.00 42.27 5.10
4977 5292 7.140705 CACAAGAAAACATAAACATCTGCAGA 58.859 34.615 20.79 20.79 0.00 4.26
5115 5430 3.192212 GCTCCTTTCCTCCAGACAAAATG 59.808 47.826 0.00 0.00 0.00 2.32
5142 5491 5.849475 TCTCAGTATAATGGAAATGGGGCTA 59.151 40.000 0.00 0.00 0.00 3.93
5143 5492 4.665009 TCTCAGTATAATGGAAATGGGGCT 59.335 41.667 0.00 0.00 0.00 5.19
5165 5514 3.106738 TCCGGACGGAGGAAGTATC 57.893 57.895 9.76 0.00 39.76 2.24
5264 5618 6.491745 TGTGGATGTAGGCTGTTTTTATTTGA 59.508 34.615 0.00 0.00 0.00 2.69
5266 5620 6.909550 TGTGGATGTAGGCTGTTTTTATTT 57.090 33.333 0.00 0.00 0.00 1.40
5302 5656 6.321181 TGAAAAGATTTTACACTCAGCTTGGT 59.679 34.615 0.00 0.00 0.00 3.67
5377 5731 3.058155 GTCTCTCGCTGTGTAAGAGTTGA 60.058 47.826 6.77 0.00 38.15 3.18
5405 5759 4.893524 TCCTGGATGTAGTATGTGGTACTG 59.106 45.833 0.00 0.00 43.44 2.74
5406 5760 5.138758 TCCTGGATGTAGTATGTGGTACT 57.861 43.478 0.00 0.00 45.49 2.73
5407 5761 5.128171 TGTTCCTGGATGTAGTATGTGGTAC 59.872 44.000 0.00 0.00 0.00 3.34
5408 5762 5.274015 TGTTCCTGGATGTAGTATGTGGTA 58.726 41.667 0.00 0.00 0.00 3.25
5409 5763 4.101114 TGTTCCTGGATGTAGTATGTGGT 58.899 43.478 0.00 0.00 0.00 4.16
5410 5764 4.162320 ACTGTTCCTGGATGTAGTATGTGG 59.838 45.833 0.00 0.00 0.00 4.17
5411 5765 5.344743 ACTGTTCCTGGATGTAGTATGTG 57.655 43.478 0.00 0.00 0.00 3.21
5412 5766 7.490657 TTTACTGTTCCTGGATGTAGTATGT 57.509 36.000 12.86 2.33 0.00 2.29
5422 5776 4.703897 CTGTCAGTTTTACTGTTCCTGGA 58.296 43.478 6.71 0.00 46.03 3.86
5520 5874 2.092968 TGCAGTGGGTAGGAAATGCTAG 60.093 50.000 0.00 0.00 34.80 3.42
5569 5930 9.466497 AAGCATTGATCACCTTTTATTCTTCTA 57.534 29.630 0.00 0.00 0.00 2.10
5577 5938 6.493115 TGGAAGAAAGCATTGATCACCTTTTA 59.507 34.615 13.40 0.00 0.00 1.52
5579 5940 4.834496 TGGAAGAAAGCATTGATCACCTTT 59.166 37.500 12.49 12.49 0.00 3.11
5580 5941 4.410099 TGGAAGAAAGCATTGATCACCTT 58.590 39.130 0.00 0.00 0.00 3.50
5581 5942 4.038271 TGGAAGAAAGCATTGATCACCT 57.962 40.909 0.00 0.00 0.00 4.00
5582 5943 4.996788 ATGGAAGAAAGCATTGATCACC 57.003 40.909 0.00 0.00 0.00 4.02
5583 5944 6.441093 TGTATGGAAGAAAGCATTGATCAC 57.559 37.500 0.00 0.00 0.00 3.06
5584 5945 6.433716 TGTTGTATGGAAGAAAGCATTGATCA 59.566 34.615 0.00 0.00 0.00 2.92
5619 5981 3.051032 AGAGGATGGGAGGATCAGGTAAA 60.051 47.826 0.00 0.00 36.25 2.01
5732 6094 4.215399 CAGGCTCAATTTCCTTGTAACGAA 59.785 41.667 0.00 0.00 36.20 3.85
5773 6135 2.241430 TCCCGGTGAAGTCTCTCTATGA 59.759 50.000 0.00 0.00 0.00 2.15
5816 6178 0.950116 GAGCAGAATGGCTGTATGGC 59.050 55.000 0.00 0.00 45.99 4.40
5817 6179 2.336945 TGAGCAGAATGGCTGTATGG 57.663 50.000 0.00 0.00 45.99 2.74
5818 6180 4.135306 AGATTGAGCAGAATGGCTGTATG 58.865 43.478 0.00 0.00 45.99 2.39
5819 6181 4.434545 AGATTGAGCAGAATGGCTGTAT 57.565 40.909 0.00 0.00 45.99 2.29
5820 6182 3.920231 AGATTGAGCAGAATGGCTGTA 57.080 42.857 0.00 0.00 45.99 2.74
5821 6183 2.803030 AGATTGAGCAGAATGGCTGT 57.197 45.000 0.00 0.00 45.99 4.40
5822 6184 4.386711 TCATAGATTGAGCAGAATGGCTG 58.613 43.478 0.00 0.00 45.99 4.85
5824 6186 5.762825 TTTCATAGATTGAGCAGAATGGC 57.237 39.130 0.00 0.00 35.27 4.40
5825 6187 6.150318 GCATTTCATAGATTGAGCAGAATGG 58.850 40.000 0.00 0.00 35.27 3.16
5826 6188 6.150318 GGCATTTCATAGATTGAGCAGAATG 58.850 40.000 0.00 0.00 35.27 2.67
5827 6189 5.831525 TGGCATTTCATAGATTGAGCAGAAT 59.168 36.000 0.00 0.00 35.27 2.40
5828 6190 5.195185 TGGCATTTCATAGATTGAGCAGAA 58.805 37.500 0.00 0.00 35.27 3.02
5829 6191 4.784177 TGGCATTTCATAGATTGAGCAGA 58.216 39.130 0.00 0.00 35.27 4.26
5830 6192 4.579340 ACTGGCATTTCATAGATTGAGCAG 59.421 41.667 0.00 0.00 35.27 4.24
5831 6193 4.337274 CACTGGCATTTCATAGATTGAGCA 59.663 41.667 0.00 0.00 35.27 4.26
5832 6194 4.577693 TCACTGGCATTTCATAGATTGAGC 59.422 41.667 0.00 0.00 35.27 4.26
5833 6195 6.094464 TGTTCACTGGCATTTCATAGATTGAG 59.906 38.462 0.00 0.00 35.27 3.02
5834 6196 5.945191 TGTTCACTGGCATTTCATAGATTGA 59.055 36.000 0.00 0.00 0.00 2.57
5835 6197 6.032094 GTGTTCACTGGCATTTCATAGATTG 58.968 40.000 0.00 0.00 0.00 2.67
5836 6198 5.948162 AGTGTTCACTGGCATTTCATAGATT 59.052 36.000 4.58 0.00 0.00 2.40
5837 6199 5.356190 CAGTGTTCACTGGCATTTCATAGAT 59.644 40.000 21.03 0.00 34.28 1.98
5838 6200 4.696877 CAGTGTTCACTGGCATTTCATAGA 59.303 41.667 21.03 0.00 34.28 1.98
5839 6201 4.978186 CAGTGTTCACTGGCATTTCATAG 58.022 43.478 21.03 0.00 34.28 2.23
5841 6203 3.928727 CAGTGTTCACTGGCATTTCAT 57.071 42.857 21.03 0.00 34.28 2.57
5850 6212 5.756195 TTTGAAAGATCCAGTGTTCACTG 57.244 39.130 21.61 21.61 37.48 3.66
5851 6213 6.773976 TTTTTGAAAGATCCAGTGTTCACT 57.226 33.333 0.00 0.00 30.00 3.41
5874 6236 5.200368 CAGACAAGGTTGTATGGCTTTTT 57.800 39.130 9.20 0.00 44.32 1.94
5875 6237 4.853924 CAGACAAGGTTGTATGGCTTTT 57.146 40.909 9.20 0.00 44.32 2.27
6010 6372 2.166829 ACATGTTAATGCCGCCAAAGA 58.833 42.857 0.00 0.00 37.29 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.