Multiple sequence alignment - TraesCS6D01G257800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G257800 chr6D 100.000 3677 0 0 339 4015 363456156 363452480 0.000000e+00 6791.0
1 TraesCS6D01G257800 chr6D 80.404 495 69 15 1209 1685 363396145 363395661 6.380000e-93 351.0
2 TraesCS6D01G257800 chr6D 100.000 100 0 0 1 100 363456494 363456395 6.850000e-43 185.0
3 TraesCS6D01G257800 chr6A 91.024 1103 59 12 609 1687 504395256 504394170 0.000000e+00 1452.0
4 TraesCS6D01G257800 chr6A 92.828 990 59 4 1701 2683 504394112 504393128 0.000000e+00 1424.0
5 TraesCS6D01G257800 chr6A 90.936 673 60 1 3344 4015 504392841 504392169 0.000000e+00 904.0
6 TraesCS6D01G257800 chr6A 85.970 335 41 5 1356 1687 361705699 361705368 1.780000e-93 353.0
7 TraesCS6D01G257800 chr6A 79.359 499 71 20 1209 1685 504198231 504197743 5.010000e-84 322.0
8 TraesCS6D01G257800 chr6A 79.381 291 45 7 2055 2343 504157066 504156789 1.470000e-44 191.0
9 TraesCS6D01G257800 chr6B 90.030 1013 60 19 1694 2696 545466178 545465197 0.000000e+00 1273.0
10 TraesCS6D01G257800 chr6B 91.045 603 49 4 3155 3753 545464809 545464208 0.000000e+00 809.0
11 TraesCS6D01G257800 chr6B 83.664 655 54 22 845 1454 545468904 545468258 5.820000e-158 568.0
12 TraesCS6D01G257800 chr6B 90.262 267 25 1 3749 4015 545450084 545449819 8.260000e-92 348.0
13 TraesCS6D01G257800 chr6B 79.032 496 81 15 1209 1685 545394362 545393871 6.480000e-83 318.0
14 TraesCS6D01G257800 chr6B 96.855 159 5 0 1442 1600 545466853 545466695 2.380000e-67 267.0
15 TraesCS6D01G257800 chr6B 86.321 212 23 6 2763 2971 545465076 545464868 4.040000e-55 226.0
16 TraesCS6D01G257800 chr6B 80.377 265 37 7 2081 2343 545381489 545381238 1.910000e-43 187.0
17 TraesCS6D01G257800 chr6B 75.877 228 49 4 3182 3404 643986884 643986658 1.180000e-20 111.0
18 TraesCS6D01G257800 chr1A 88.439 346 33 6 1345 1687 149129309 149129650 1.040000e-110 411.0
19 TraesCS6D01G257800 chr1A 87.821 312 25 5 1432 1732 160263974 160264283 1.780000e-93 353.0
20 TraesCS6D01G257800 chr1A 86.070 201 23 3 1804 2004 149129816 149130011 1.130000e-50 211.0
21 TraesCS6D01G257800 chr1A 84.422 199 26 3 1802 2000 160264392 160264585 1.470000e-44 191.0
22 TraesCS6D01G257800 chr1A 77.640 161 30 5 1221 1378 108174507 108174350 4.270000e-15 93.5
23 TraesCS6D01G257800 chr1D 73.431 478 103 19 1206 1671 77337693 77337228 1.490000e-34 158.0
24 TraesCS6D01G257800 chr1B 78.261 207 39 6 1175 1378 120469951 120469748 1.170000e-25 128.0
25 TraesCS6D01G257800 chr3D 77.576 165 31 6 1217 1378 325993971 325993810 1.190000e-15 95.3
26 TraesCS6D01G257800 chr7B 87.500 64 8 0 1316 1379 15072451 15072388 1.550000e-09 75.0
27 TraesCS6D01G257800 chr7B 82.500 80 14 0 1301 1380 437673053 437672974 2.000000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G257800 chr6D 363452480 363456494 4014 True 3488.0 6791 100.0000 1 4015 2 chr6D.!!$R2 4014
1 TraesCS6D01G257800 chr6A 504392169 504395256 3087 True 1260.0 1452 91.5960 609 4015 3 chr6A.!!$R4 3406
2 TraesCS6D01G257800 chr6B 545464208 545468904 4696 True 628.6 1273 89.5830 845 3753 5 chr6B.!!$R5 2908
3 TraesCS6D01G257800 chr1A 149129309 149130011 702 False 311.0 411 87.2545 1345 2004 2 chr1A.!!$F1 659
4 TraesCS6D01G257800 chr1A 160263974 160264585 611 False 272.0 353 86.1215 1432 2000 2 chr1A.!!$F2 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 545 0.179000 AAGATGGAGGTGATGGTCGC 59.821 55.0 0.0 0.0 0.0 5.19 F
2017 4035 0.252197 CCACACCCACCCTAGCTAAC 59.748 60.0 0.0 0.0 0.0 2.34 F
2304 4327 0.386100 CGATCTGTACCGCCTCATCG 60.386 60.0 0.0 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 4453 0.036010 AGCCTGCCACAGATACACAC 60.036 55.0 0.00 0.00 32.44 3.82 R
2899 5012 0.038159 GAACCGCTCTGCACTAGTGT 60.038 55.0 23.44 0.45 0.00 3.55 R
3887 6002 0.179089 CTGAGCCATGACTCTTCGGG 60.179 60.0 10.57 0.00 37.58 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.457496 CTCCACACCGATGGCGCT 62.457 66.667 7.64 0.00 39.85 5.92
19 20 3.071837 TCCACACCGATGGCGCTA 61.072 61.111 7.64 0.00 39.85 4.26
20 21 2.125310 CCACACCGATGGCGCTAA 60.125 61.111 7.64 0.00 35.83 3.09
21 22 2.461110 CCACACCGATGGCGCTAAC 61.461 63.158 7.64 0.00 35.83 2.34
22 23 1.739929 CACACCGATGGCGCTAACA 60.740 57.895 7.64 0.00 35.83 2.41
23 24 1.004320 ACACCGATGGCGCTAACAA 60.004 52.632 7.64 0.00 35.83 2.83
24 25 1.296056 ACACCGATGGCGCTAACAAC 61.296 55.000 7.64 0.00 35.83 3.32
25 26 2.098233 ACCGATGGCGCTAACAACG 61.098 57.895 7.64 7.62 35.83 4.10
26 27 2.701006 CGATGGCGCTAACAACGG 59.299 61.111 7.64 0.00 31.62 4.44
27 28 2.098233 CGATGGCGCTAACAACGGT 61.098 57.895 7.64 0.00 31.62 4.83
28 29 1.632046 CGATGGCGCTAACAACGGTT 61.632 55.000 7.64 0.00 41.06 4.44
29 30 0.179200 GATGGCGCTAACAACGGTTG 60.179 55.000 18.81 18.81 37.88 3.77
30 31 2.127003 GGCGCTAACAACGGTTGC 60.127 61.111 20.20 5.85 37.88 4.17
31 32 2.613506 GGCGCTAACAACGGTTGCT 61.614 57.895 20.20 11.28 37.88 3.91
32 33 1.154469 GCGCTAACAACGGTTGCTC 60.154 57.895 20.20 6.50 37.88 4.26
33 34 1.495951 CGCTAACAACGGTTGCTCC 59.504 57.895 20.20 6.14 37.88 4.70
34 35 1.873863 GCTAACAACGGTTGCTCCC 59.126 57.895 20.20 3.91 37.88 4.30
35 36 1.583495 GCTAACAACGGTTGCTCCCC 61.583 60.000 20.20 2.56 37.88 4.81
36 37 0.250553 CTAACAACGGTTGCTCCCCA 60.251 55.000 20.20 0.00 37.88 4.96
37 38 0.402504 TAACAACGGTTGCTCCCCAT 59.597 50.000 20.20 0.00 37.88 4.00
38 39 0.469144 AACAACGGTTGCTCCCCATT 60.469 50.000 20.20 3.02 35.46 3.16
39 40 1.178534 ACAACGGTTGCTCCCCATTG 61.179 55.000 20.20 0.00 0.00 2.82
40 41 1.152830 AACGGTTGCTCCCCATTGT 59.847 52.632 0.00 0.00 0.00 2.71
41 42 1.178534 AACGGTTGCTCCCCATTGTG 61.179 55.000 0.00 0.00 0.00 3.33
42 43 1.303236 CGGTTGCTCCCCATTGTGA 60.303 57.895 0.00 0.00 0.00 3.58
43 44 0.893270 CGGTTGCTCCCCATTGTGAA 60.893 55.000 0.00 0.00 0.00 3.18
44 45 0.603065 GGTTGCTCCCCATTGTGAAC 59.397 55.000 0.00 0.00 0.00 3.18
45 46 1.327303 GTTGCTCCCCATTGTGAACA 58.673 50.000 0.00 0.00 0.00 3.18
46 47 1.686052 GTTGCTCCCCATTGTGAACAA 59.314 47.619 0.00 0.00 40.51 2.83
47 48 1.327303 TGCTCCCCATTGTGAACAAC 58.673 50.000 0.00 0.00 38.86 3.32
48 49 1.327303 GCTCCCCATTGTGAACAACA 58.673 50.000 0.00 0.00 38.86 3.33
49 50 1.895131 GCTCCCCATTGTGAACAACAT 59.105 47.619 0.00 0.00 38.99 2.71
50 51 3.088532 GCTCCCCATTGTGAACAACATA 58.911 45.455 0.00 0.00 38.99 2.29
51 52 3.129287 GCTCCCCATTGTGAACAACATAG 59.871 47.826 0.00 0.00 38.99 2.23
52 53 3.088532 TCCCCATTGTGAACAACATAGC 58.911 45.455 0.00 0.00 38.99 2.97
53 54 2.159393 CCCCATTGTGAACAACATAGCG 60.159 50.000 0.00 0.00 38.99 4.26
54 55 2.159393 CCCATTGTGAACAACATAGCGG 60.159 50.000 0.00 0.00 38.99 5.52
55 56 2.518949 CATTGTGAACAACATAGCGGC 58.481 47.619 0.00 0.00 38.99 6.53
56 57 0.515127 TTGTGAACAACATAGCGGCG 59.485 50.000 0.51 0.51 38.99 6.46
57 58 1.295357 TGTGAACAACATAGCGGCGG 61.295 55.000 9.78 0.00 32.36 6.13
58 59 1.004320 TGAACAACATAGCGGCGGT 60.004 52.632 18.21 18.21 0.00 5.68
59 60 1.295357 TGAACAACATAGCGGCGGTG 61.295 55.000 23.33 8.51 0.00 4.94
60 61 1.004320 AACAACATAGCGGCGGTGA 60.004 52.632 23.33 6.28 0.00 4.02
61 62 1.019278 AACAACATAGCGGCGGTGAG 61.019 55.000 23.33 15.94 0.00 3.51
62 63 2.173669 CAACATAGCGGCGGTGAGG 61.174 63.158 23.33 13.01 0.00 3.86
63 64 4.530857 ACATAGCGGCGGTGAGGC 62.531 66.667 23.33 0.00 42.76 4.70
87 88 4.162690 GCCACCCGCGATTCCTCT 62.163 66.667 8.23 0.00 0.00 3.69
88 89 2.792947 GCCACCCGCGATTCCTCTA 61.793 63.158 8.23 0.00 0.00 2.43
89 90 1.067582 CCACCCGCGATTCCTCTAC 59.932 63.158 8.23 0.00 0.00 2.59
90 91 1.299165 CACCCGCGATTCCTCTACG 60.299 63.158 8.23 0.00 0.00 3.51
91 92 1.452651 ACCCGCGATTCCTCTACGA 60.453 57.895 8.23 0.00 0.00 3.43
92 93 1.283181 CCCGCGATTCCTCTACGAG 59.717 63.158 8.23 0.00 0.00 4.18
93 94 1.370657 CCGCGATTCCTCTACGAGC 60.371 63.158 8.23 0.00 0.00 5.03
94 95 1.722852 CGCGATTCCTCTACGAGCG 60.723 63.158 0.00 0.00 40.14 5.03
95 96 2.011881 GCGATTCCTCTACGAGCGC 61.012 63.158 0.00 0.00 36.12 5.92
96 97 1.649815 CGATTCCTCTACGAGCGCT 59.350 57.895 11.27 11.27 0.00 5.92
97 98 0.658829 CGATTCCTCTACGAGCGCTG 60.659 60.000 18.48 10.31 0.00 5.18
98 99 0.937231 GATTCCTCTACGAGCGCTGC 60.937 60.000 18.48 5.60 0.00 5.25
99 100 2.356818 ATTCCTCTACGAGCGCTGCC 62.357 60.000 18.48 0.00 0.00 4.85
355 356 4.313819 TCAATGCTGCAGGCTCTG 57.686 55.556 17.12 9.21 42.39 3.35
364 365 4.128139 CAGGCTCTGCTGCTGATC 57.872 61.111 9.72 5.79 0.00 2.92
365 366 1.883544 CAGGCTCTGCTGCTGATCG 60.884 63.158 9.72 0.91 0.00 3.69
366 367 2.186384 GGCTCTGCTGCTGATCGT 59.814 61.111 9.72 0.00 0.00 3.73
367 368 1.882167 GGCTCTGCTGCTGATCGTC 60.882 63.158 9.72 0.00 0.00 4.20
368 369 1.153686 GCTCTGCTGCTGATCGTCA 60.154 57.895 9.72 0.00 0.00 4.35
369 370 0.530211 GCTCTGCTGCTGATCGTCAT 60.530 55.000 9.72 0.00 0.00 3.06
370 371 1.269465 GCTCTGCTGCTGATCGTCATA 60.269 52.381 9.72 0.00 0.00 2.15
371 372 2.663808 CTCTGCTGCTGATCGTCATAG 58.336 52.381 9.72 0.00 0.00 2.23
372 373 2.027385 TCTGCTGCTGATCGTCATAGT 58.973 47.619 5.03 0.00 0.00 2.12
373 374 2.125685 CTGCTGCTGATCGTCATAGTG 58.874 52.381 0.00 0.00 0.00 2.74
374 375 1.750778 TGCTGCTGATCGTCATAGTGA 59.249 47.619 0.00 0.00 0.00 3.41
375 376 2.223665 TGCTGCTGATCGTCATAGTGAG 60.224 50.000 0.00 0.00 0.00 3.51
376 377 2.861750 GCTGCTGATCGTCATAGTGAGG 60.862 54.545 0.00 0.00 33.88 3.86
377 378 1.067669 TGCTGATCGTCATAGTGAGGC 59.932 52.381 0.00 0.00 32.73 4.70
378 379 1.067669 GCTGATCGTCATAGTGAGGCA 59.932 52.381 0.00 0.00 32.73 4.75
379 380 2.861750 GCTGATCGTCATAGTGAGGCAG 60.862 54.545 0.00 0.00 32.73 4.85
380 381 2.620585 CTGATCGTCATAGTGAGGCAGA 59.379 50.000 0.00 0.00 32.73 4.26
381 382 2.620585 TGATCGTCATAGTGAGGCAGAG 59.379 50.000 0.00 0.00 32.73 3.35
382 383 2.420058 TCGTCATAGTGAGGCAGAGA 57.580 50.000 0.00 0.00 32.73 3.10
383 384 2.723273 TCGTCATAGTGAGGCAGAGAA 58.277 47.619 0.00 0.00 32.73 2.87
384 385 2.685388 TCGTCATAGTGAGGCAGAGAAG 59.315 50.000 0.00 0.00 32.73 2.85
385 386 2.685388 CGTCATAGTGAGGCAGAGAAGA 59.315 50.000 0.00 0.00 0.00 2.87
386 387 3.243035 CGTCATAGTGAGGCAGAGAAGAG 60.243 52.174 0.00 0.00 0.00 2.85
387 388 3.068024 GTCATAGTGAGGCAGAGAAGAGG 59.932 52.174 0.00 0.00 0.00 3.69
388 389 3.053320 TCATAGTGAGGCAGAGAAGAGGA 60.053 47.826 0.00 0.00 0.00 3.71
389 390 1.555967 AGTGAGGCAGAGAAGAGGAC 58.444 55.000 0.00 0.00 0.00 3.85
390 391 1.203112 AGTGAGGCAGAGAAGAGGACA 60.203 52.381 0.00 0.00 0.00 4.02
391 392 1.204467 GTGAGGCAGAGAAGAGGACAG 59.796 57.143 0.00 0.00 0.00 3.51
392 393 0.823460 GAGGCAGAGAAGAGGACAGG 59.177 60.000 0.00 0.00 0.00 4.00
393 394 0.617249 AGGCAGAGAAGAGGACAGGG 60.617 60.000 0.00 0.00 0.00 4.45
394 395 0.907230 GGCAGAGAAGAGGACAGGGT 60.907 60.000 0.00 0.00 0.00 4.34
395 396 0.534873 GCAGAGAAGAGGACAGGGTC 59.465 60.000 0.00 0.00 0.00 4.46
396 397 0.814457 CAGAGAAGAGGACAGGGTCG 59.186 60.000 0.00 0.00 32.65 4.79
397 398 0.323908 AGAGAAGAGGACAGGGTCGG 60.324 60.000 0.00 0.00 32.65 4.79
398 399 1.950973 GAGAAGAGGACAGGGTCGGC 61.951 65.000 0.00 0.00 32.65 5.54
399 400 3.358076 GAAGAGGACAGGGTCGGCG 62.358 68.421 0.00 0.00 32.65 6.46
416 417 3.434319 GGCACCACATGACGGCTG 61.434 66.667 0.00 0.00 0.00 4.85
417 418 3.434319 GCACCACATGACGGCTGG 61.434 66.667 0.00 0.00 0.00 4.85
418 419 3.434319 CACCACATGACGGCTGGC 61.434 66.667 0.00 0.00 0.00 4.85
419 420 3.640407 ACCACATGACGGCTGGCT 61.640 61.111 0.00 0.00 0.00 4.75
420 421 2.360350 CCACATGACGGCTGGCTT 60.360 61.111 0.00 0.00 0.00 4.35
421 422 2.693762 CCACATGACGGCTGGCTTG 61.694 63.158 12.62 12.62 0.00 4.01
422 423 1.968017 CACATGACGGCTGGCTTGT 60.968 57.895 14.02 14.02 0.00 3.16
423 424 1.968017 ACATGACGGCTGGCTTGTG 60.968 57.895 18.64 8.15 0.00 3.33
424 425 2.360350 ATGACGGCTGGCTTGTGG 60.360 61.111 0.00 0.00 0.00 4.17
425 426 2.894257 ATGACGGCTGGCTTGTGGA 61.894 57.895 0.00 0.00 0.00 4.02
426 427 2.045926 GACGGCTGGCTTGTGGAT 60.046 61.111 0.00 0.00 0.00 3.41
427 428 2.360350 ACGGCTGGCTTGTGGATG 60.360 61.111 0.00 0.00 0.00 3.51
428 429 3.818787 CGGCTGGCTTGTGGATGC 61.819 66.667 0.00 0.00 0.00 3.91
429 430 2.362120 GGCTGGCTTGTGGATGCT 60.362 61.111 0.00 0.00 0.00 3.79
430 431 2.413142 GGCTGGCTTGTGGATGCTC 61.413 63.158 0.00 0.00 0.00 4.26
431 432 2.758089 GCTGGCTTGTGGATGCTCG 61.758 63.158 0.00 0.00 0.00 5.03
432 433 2.046023 TGGCTTGTGGATGCTCGG 60.046 61.111 0.00 0.00 0.00 4.63
433 434 2.268920 GGCTTGTGGATGCTCGGA 59.731 61.111 0.00 0.00 0.00 4.55
434 435 1.153086 GGCTTGTGGATGCTCGGAT 60.153 57.895 0.00 0.00 0.00 4.18
435 436 1.162800 GGCTTGTGGATGCTCGGATC 61.163 60.000 0.00 0.00 0.00 3.36
436 437 1.162800 GCTTGTGGATGCTCGGATCC 61.163 60.000 10.18 10.18 42.23 3.36
437 438 0.877649 CTTGTGGATGCTCGGATCCG 60.878 60.000 28.62 28.62 44.52 4.18
438 439 1.613317 TTGTGGATGCTCGGATCCGT 61.613 55.000 32.15 14.63 44.52 4.69
439 440 1.300233 GTGGATGCTCGGATCCGTC 60.300 63.158 32.15 24.13 44.52 4.79
440 441 2.049985 GGATGCTCGGATCCGTCG 60.050 66.667 32.15 24.14 40.74 5.12
441 442 2.552819 GGATGCTCGGATCCGTCGA 61.553 63.158 32.15 17.59 40.74 4.20
442 443 1.370657 GATGCTCGGATCCGTCGAC 60.371 63.158 32.15 19.84 40.74 4.20
443 444 2.734756 GATGCTCGGATCCGTCGACC 62.735 65.000 32.15 16.55 40.74 4.79
444 445 3.515286 GCTCGGATCCGTCGACCA 61.515 66.667 32.15 12.31 40.74 4.02
445 446 2.716244 CTCGGATCCGTCGACCAG 59.284 66.667 32.15 17.99 40.74 4.00
446 447 1.818363 CTCGGATCCGTCGACCAGA 60.818 63.158 32.15 10.78 40.74 3.86
447 448 1.374343 CTCGGATCCGTCGACCAGAA 61.374 60.000 32.15 10.04 40.74 3.02
448 449 1.226603 CGGATCCGTCGACCAGAAC 60.227 63.158 26.35 6.00 34.35 3.01
449 450 1.141234 GGATCCGTCGACCAGAACC 59.859 63.158 10.58 11.47 0.00 3.62
450 451 1.226603 GATCCGTCGACCAGAACCG 60.227 63.158 10.58 0.00 0.00 4.44
451 452 2.609183 GATCCGTCGACCAGAACCGG 62.609 65.000 10.58 0.00 39.16 5.28
452 453 4.430765 CCGTCGACCAGAACCGGG 62.431 72.222 10.58 0.00 35.57 5.73
453 454 4.430765 CGTCGACCAGAACCGGGG 62.431 72.222 10.58 0.00 0.00 5.73
454 455 4.754667 GTCGACCAGAACCGGGGC 62.755 72.222 6.32 0.00 0.00 5.80
465 466 4.778143 CCGGGGCGGTGGAAGAAG 62.778 72.222 0.00 0.00 42.73 2.85
466 467 4.778143 CGGGGCGGTGGAAGAAGG 62.778 72.222 0.00 0.00 0.00 3.46
471 472 4.778143 CGGTGGAAGAAGGCGGGG 62.778 72.222 0.00 0.00 0.00 5.73
473 474 4.344865 GTGGAAGAAGGCGGGGCA 62.345 66.667 0.00 0.00 0.00 5.36
474 475 4.344865 TGGAAGAAGGCGGGGCAC 62.345 66.667 0.00 0.00 0.00 5.01
476 477 4.699522 GAAGAAGGCGGGGCACGT 62.700 66.667 12.27 0.00 46.52 4.49
496 497 4.821589 GCGCGGAGGAAGGTGGAG 62.822 72.222 8.83 0.00 0.00 3.86
497 498 3.382832 CGCGGAGGAAGGTGGAGT 61.383 66.667 0.00 0.00 0.00 3.85
498 499 2.266055 GCGGAGGAAGGTGGAGTG 59.734 66.667 0.00 0.00 0.00 3.51
499 500 2.982130 CGGAGGAAGGTGGAGTGG 59.018 66.667 0.00 0.00 0.00 4.00
500 501 2.660064 CGGAGGAAGGTGGAGTGGG 61.660 68.421 0.00 0.00 0.00 4.61
501 502 2.301738 GGAGGAAGGTGGAGTGGGG 61.302 68.421 0.00 0.00 0.00 4.96
502 503 2.936032 AGGAAGGTGGAGTGGGGC 60.936 66.667 0.00 0.00 0.00 5.80
503 504 4.048470 GGAAGGTGGAGTGGGGCC 62.048 72.222 0.00 0.00 0.00 5.80
504 505 3.256960 GAAGGTGGAGTGGGGCCA 61.257 66.667 4.39 0.00 0.00 5.36
505 506 2.535317 AAGGTGGAGTGGGGCCAT 60.535 61.111 4.39 0.00 37.81 4.40
506 507 2.843912 GAAGGTGGAGTGGGGCCATG 62.844 65.000 4.39 0.00 37.81 3.66
507 508 4.447342 GGTGGAGTGGGGCCATGG 62.447 72.222 7.63 7.63 37.81 3.66
519 520 3.118454 CCATGGCACGACACCGAC 61.118 66.667 0.00 0.00 39.50 4.79
520 521 3.478394 CATGGCACGACACCGACG 61.478 66.667 0.00 0.00 39.50 5.12
521 522 4.735132 ATGGCACGACACCGACGG 62.735 66.667 13.61 13.61 39.50 4.79
525 526 4.337060 CACGACACCGACGGCAGA 62.337 66.667 15.39 0.00 39.50 4.26
526 527 3.598715 ACGACACCGACGGCAGAA 61.599 61.111 15.39 0.00 39.50 3.02
527 528 2.805353 CGACACCGACGGCAGAAG 60.805 66.667 15.39 1.43 38.22 2.85
528 529 2.649034 GACACCGACGGCAGAAGA 59.351 61.111 15.39 0.00 0.00 2.87
529 530 1.215647 GACACCGACGGCAGAAGAT 59.784 57.895 15.39 0.00 0.00 2.40
530 531 1.078759 GACACCGACGGCAGAAGATG 61.079 60.000 15.39 5.25 0.00 2.90
531 532 1.811266 CACCGACGGCAGAAGATGG 60.811 63.158 15.39 0.00 0.00 3.51
532 533 1.982395 ACCGACGGCAGAAGATGGA 60.982 57.895 15.39 0.00 0.00 3.41
533 534 1.227089 CCGACGGCAGAAGATGGAG 60.227 63.158 0.00 0.00 0.00 3.86
534 535 1.227089 CGACGGCAGAAGATGGAGG 60.227 63.158 0.00 0.00 0.00 4.30
535 536 1.901085 GACGGCAGAAGATGGAGGT 59.099 57.895 0.00 0.00 0.00 3.85
536 537 0.460987 GACGGCAGAAGATGGAGGTG 60.461 60.000 0.00 0.00 0.00 4.00
537 538 0.904865 ACGGCAGAAGATGGAGGTGA 60.905 55.000 0.00 0.00 0.00 4.02
538 539 0.467384 CGGCAGAAGATGGAGGTGAT 59.533 55.000 0.00 0.00 0.00 3.06
539 540 1.809271 CGGCAGAAGATGGAGGTGATG 60.809 57.143 0.00 0.00 0.00 3.07
540 541 1.476471 GGCAGAAGATGGAGGTGATGG 60.476 57.143 0.00 0.00 0.00 3.51
541 542 1.211457 GCAGAAGATGGAGGTGATGGT 59.789 52.381 0.00 0.00 0.00 3.55
542 543 2.744494 GCAGAAGATGGAGGTGATGGTC 60.744 54.545 0.00 0.00 0.00 4.02
543 544 1.759445 AGAAGATGGAGGTGATGGTCG 59.241 52.381 0.00 0.00 0.00 4.79
544 545 0.179000 AAGATGGAGGTGATGGTCGC 59.821 55.000 0.00 0.00 0.00 5.19
551 552 3.499737 GTGATGGTCGCCGGCAAG 61.500 66.667 28.98 11.67 0.00 4.01
552 553 4.776322 TGATGGTCGCCGGCAAGG 62.776 66.667 28.98 10.81 44.97 3.61
557 558 4.162690 GTCGCCGGCAAGGGAGAT 62.163 66.667 28.98 0.00 38.20 2.75
558 559 4.161295 TCGCCGGCAAGGGAGATG 62.161 66.667 28.98 6.54 41.48 2.90
560 561 4.883354 GCCGGCAAGGGAGATGGG 62.883 72.222 24.80 0.00 41.48 4.00
561 562 3.089874 CCGGCAAGGGAGATGGGA 61.090 66.667 0.00 0.00 35.97 4.37
562 563 2.507944 CGGCAAGGGAGATGGGAG 59.492 66.667 0.00 0.00 0.00 4.30
563 564 2.922234 GGCAAGGGAGATGGGAGG 59.078 66.667 0.00 0.00 0.00 4.30
564 565 2.003548 GGCAAGGGAGATGGGAGGT 61.004 63.158 0.00 0.00 0.00 3.85
565 566 1.225704 GCAAGGGAGATGGGAGGTG 59.774 63.158 0.00 0.00 0.00 4.00
566 567 1.274703 GCAAGGGAGATGGGAGGTGA 61.275 60.000 0.00 0.00 0.00 4.02
567 568 1.516110 CAAGGGAGATGGGAGGTGAT 58.484 55.000 0.00 0.00 0.00 3.06
568 569 1.419387 CAAGGGAGATGGGAGGTGATC 59.581 57.143 0.00 0.00 0.00 2.92
569 570 0.644380 AGGGAGATGGGAGGTGATCA 59.356 55.000 0.00 0.00 0.00 2.92
570 571 1.225168 AGGGAGATGGGAGGTGATCAT 59.775 52.381 0.00 0.00 0.00 2.45
571 572 1.350351 GGGAGATGGGAGGTGATCATG 59.650 57.143 0.00 0.00 0.00 3.07
572 573 1.271271 GGAGATGGGAGGTGATCATGC 60.271 57.143 0.00 0.00 0.00 4.06
573 574 1.419012 GAGATGGGAGGTGATCATGCA 59.581 52.381 0.00 0.00 0.00 3.96
574 575 2.040012 GAGATGGGAGGTGATCATGCAT 59.960 50.000 0.00 0.00 0.00 3.96
575 576 2.445905 AGATGGGAGGTGATCATGCATT 59.554 45.455 0.00 0.00 0.00 3.56
576 577 2.832643 TGGGAGGTGATCATGCATTT 57.167 45.000 0.00 0.00 0.00 2.32
577 578 3.104519 TGGGAGGTGATCATGCATTTT 57.895 42.857 0.00 0.00 0.00 1.82
578 579 3.025978 TGGGAGGTGATCATGCATTTTC 58.974 45.455 0.00 0.00 0.00 2.29
579 580 3.025978 GGGAGGTGATCATGCATTTTCA 58.974 45.455 0.00 0.00 0.00 2.69
580 581 3.640029 GGGAGGTGATCATGCATTTTCAT 59.360 43.478 10.63 0.00 0.00 2.57
581 582 4.828939 GGGAGGTGATCATGCATTTTCATA 59.171 41.667 10.63 0.00 0.00 2.15
582 583 5.048224 GGGAGGTGATCATGCATTTTCATAG 60.048 44.000 10.63 0.00 0.00 2.23
583 584 5.766670 GGAGGTGATCATGCATTTTCATAGA 59.233 40.000 10.63 0.00 0.00 1.98
584 585 6.072618 GGAGGTGATCATGCATTTTCATAGAG 60.073 42.308 10.63 0.00 0.00 2.43
585 586 6.363065 AGGTGATCATGCATTTTCATAGAGT 58.637 36.000 10.63 0.00 0.00 3.24
586 587 6.262496 AGGTGATCATGCATTTTCATAGAGTG 59.738 38.462 10.63 0.00 0.00 3.51
587 588 6.436261 GTGATCATGCATTTTCATAGAGTGG 58.564 40.000 10.63 0.00 0.00 4.00
588 589 5.533528 TGATCATGCATTTTCATAGAGTGGG 59.466 40.000 0.00 0.00 0.00 4.61
589 590 3.633525 TCATGCATTTTCATAGAGTGGGC 59.366 43.478 0.00 0.00 0.00 5.36
590 591 3.370840 TGCATTTTCATAGAGTGGGCT 57.629 42.857 0.00 0.00 0.00 5.19
591 592 4.502105 TGCATTTTCATAGAGTGGGCTA 57.498 40.909 0.00 0.00 0.00 3.93
592 593 4.454678 TGCATTTTCATAGAGTGGGCTAG 58.545 43.478 0.00 0.00 0.00 3.42
593 594 3.817647 GCATTTTCATAGAGTGGGCTAGG 59.182 47.826 0.00 0.00 0.00 3.02
594 595 3.560636 TTTTCATAGAGTGGGCTAGGC 57.439 47.619 8.00 8.00 0.00 3.93
595 596 2.478872 TTCATAGAGTGGGCTAGGCT 57.521 50.000 16.80 0.00 0.00 4.58
596 597 3.612795 TTCATAGAGTGGGCTAGGCTA 57.387 47.619 16.80 7.37 0.00 3.93
597 598 3.162147 TCATAGAGTGGGCTAGGCTAG 57.838 52.381 17.33 17.33 0.00 3.42
598 599 2.175202 CATAGAGTGGGCTAGGCTAGG 58.825 57.143 22.40 5.26 0.00 3.02
604 605 3.307108 GGCTAGGCTAGGCTCGGG 61.307 72.222 33.61 14.74 46.78 5.14
605 606 3.307108 GCTAGGCTAGGCTCGGGG 61.307 72.222 23.89 12.32 0.00 5.73
606 607 2.198980 CTAGGCTAGGCTCGGGGT 59.801 66.667 23.89 0.00 0.00 4.95
607 608 1.457831 CTAGGCTAGGCTCGGGGTT 60.458 63.158 23.89 0.00 0.00 4.11
616 617 2.434331 CTCGGGGTTTGGCCAGAA 59.566 61.111 5.11 0.29 39.65 3.02
622 623 0.679505 GGGTTTGGCCAGAAAAGACC 59.320 55.000 5.11 8.58 39.65 3.85
635 636 5.507985 CCAGAAAAGACCAGTCAAAATGTCC 60.508 44.000 0.00 0.00 0.00 4.02
637 638 5.835280 AGAAAAGACCAGTCAAAATGTCCAT 59.165 36.000 0.00 0.00 0.00 3.41
696 699 3.458189 GGAGACCCATCTGTCATAAACG 58.542 50.000 0.00 0.00 37.73 3.60
708 711 4.212911 TGTCATAAACGTGTTTAAAGCGC 58.787 39.130 9.06 0.00 38.38 5.92
713 716 2.663279 ACGTGTTTAAAGCGCTCTTG 57.337 45.000 12.06 0.00 31.78 3.02
715 718 2.353579 ACGTGTTTAAAGCGCTCTTGTT 59.646 40.909 12.06 3.28 31.78 2.83
720 723 1.057636 TAAAGCGCTCTTGTTCGTCG 58.942 50.000 12.06 0.00 31.78 5.12
723 726 0.798771 AGCGCTCTTGTTCGTCGATC 60.799 55.000 2.64 0.00 0.00 3.69
725 728 1.336877 CGCTCTTGTTCGTCGATCAA 58.663 50.000 15.86 15.86 0.00 2.57
726 729 1.719246 CGCTCTTGTTCGTCGATCAAA 59.281 47.619 17.04 9.27 0.00 2.69
730 733 3.724374 TCTTGTTCGTCGATCAAAGGTT 58.276 40.909 17.04 0.00 0.00 3.50
734 737 3.426191 TGTTCGTCGATCAAAGGTTTACG 59.574 43.478 3.53 0.00 0.00 3.18
735 738 3.287312 TCGTCGATCAAAGGTTTACGT 57.713 42.857 0.00 0.00 0.00 3.57
736 739 4.418013 TCGTCGATCAAAGGTTTACGTA 57.582 40.909 0.00 0.00 0.00 3.57
819 822 2.741211 GCAAACCCGTCCCTCGAC 60.741 66.667 0.00 0.00 42.86 4.20
830 833 2.424302 CCTCGACGTGGTGGGTTT 59.576 61.111 10.48 0.00 0.00 3.27
834 837 1.227438 CGACGTGGTGGGTTTCTGT 60.227 57.895 0.00 0.00 0.00 3.41
889 892 2.945447 ATGCGCATGTTATGTTTGCT 57.055 40.000 24.69 0.00 34.23 3.91
906 909 1.337823 TGCTCTTTGGCCTACGAGAAC 60.338 52.381 21.90 7.85 0.00 3.01
939 942 2.202440 TCTTGCTACGCTCGTCGC 60.202 61.111 11.25 11.25 43.23 5.19
1058 1077 4.262164 GGGCAATCACAAGAGTCAAAACAT 60.262 41.667 0.00 0.00 0.00 2.71
1060 1079 4.614284 GCAATCACAAGAGTCAAAACATCG 59.386 41.667 0.00 0.00 0.00 3.84
1063 1082 4.693283 TCACAAGAGTCAAAACATCGAGT 58.307 39.130 0.00 0.00 0.00 4.18
1065 1084 3.736252 ACAAGAGTCAAAACATCGAGTCG 59.264 43.478 6.09 6.09 36.81 4.18
1385 1434 4.681942 CATCGACTTCATCGGTAAAGATCC 59.318 45.833 0.00 0.00 44.39 3.36
1742 3715 9.316730 CATTTCACATTTTAATAAGGTCCATGG 57.683 33.333 4.97 4.97 0.00 3.66
1752 3725 1.745489 GGTCCATGGCGAGTTCACC 60.745 63.158 6.96 3.53 0.00 4.02
1779 3796 3.844943 GCAACGAGTCCTCAAAAACTTCG 60.845 47.826 0.00 0.00 0.00 3.79
1780 3797 3.175109 ACGAGTCCTCAAAAACTTCGT 57.825 42.857 0.00 0.00 0.00 3.85
1781 3798 3.528532 ACGAGTCCTCAAAAACTTCGTT 58.471 40.909 0.00 0.00 30.60 3.85
1840 3857 2.447586 GATCATGGCGAGCTCCCTCC 62.448 65.000 18.49 13.15 34.49 4.30
1851 3868 2.040606 TCCCTCCTGTACCTGGGC 59.959 66.667 0.00 0.00 39.49 5.36
1996 4013 2.743928 GGCCGGTCAACTCAGCTG 60.744 66.667 7.63 7.63 0.00 4.24
2017 4035 0.252197 CCACACCCACCCTAGCTAAC 59.748 60.000 0.00 0.00 0.00 2.34
2020 4038 2.167900 CACACCCACCCTAGCTAACTAC 59.832 54.545 0.00 0.00 0.00 2.73
2023 4041 3.132467 CACCCACCCTAGCTAACTACTTC 59.868 52.174 0.00 0.00 0.00 3.01
2024 4042 3.245875 ACCCACCCTAGCTAACTACTTCA 60.246 47.826 0.00 0.00 0.00 3.02
2025 4043 3.773119 CCCACCCTAGCTAACTACTTCAA 59.227 47.826 0.00 0.00 0.00 2.69
2026 4044 4.409247 CCCACCCTAGCTAACTACTTCAAT 59.591 45.833 0.00 0.00 0.00 2.57
2027 4045 5.104485 CCCACCCTAGCTAACTACTTCAATT 60.104 44.000 0.00 0.00 0.00 2.32
2030 4048 8.044908 CCACCCTAGCTAACTACTTCAATTTTA 58.955 37.037 0.00 0.00 0.00 1.52
2032 4050 8.045507 ACCCTAGCTAACTACTTCAATTTTACC 58.954 37.037 0.00 0.00 0.00 2.85
2033 4051 7.224167 CCCTAGCTAACTACTTCAATTTTACCG 59.776 40.741 0.00 0.00 0.00 4.02
2034 4052 7.763071 CCTAGCTAACTACTTCAATTTTACCGT 59.237 37.037 0.00 0.00 0.00 4.83
2035 4053 9.793252 CTAGCTAACTACTTCAATTTTACCGTA 57.207 33.333 0.00 0.00 0.00 4.02
2037 4055 9.662947 AGCTAACTACTTCAATTTTACCGTATT 57.337 29.630 0.00 0.00 0.00 1.89
2048 4071 5.844301 TTTTACCGTATTTGTCTCGTTCC 57.156 39.130 0.00 0.00 0.00 3.62
2050 4073 2.680577 ACCGTATTTGTCTCGTTCCAC 58.319 47.619 0.00 0.00 0.00 4.02
2114 4137 1.991230 GGGGATGATACCGATGGGG 59.009 63.158 0.00 0.00 43.62 4.96
2299 4322 3.900892 CGCCGATCTGTACCGCCT 61.901 66.667 0.00 0.00 0.00 5.52
2304 4327 0.386100 CGATCTGTACCGCCTCATCG 60.386 60.000 0.00 0.00 0.00 3.84
2693 4778 4.082026 GCCTGGACAGCAAATATTGAGTTT 60.082 41.667 0.00 0.00 0.00 2.66
2713 4798 6.721321 AGTTTTTGGTGTTGTAGATGTAACG 58.279 36.000 0.00 0.00 0.00 3.18
2715 4800 3.322211 TGGTGTTGTAGATGTAACGGG 57.678 47.619 0.00 0.00 0.00 5.28
2834 4937 7.947282 TGGGAAAAGAGTTTAAGGTTTATGTG 58.053 34.615 0.00 0.00 0.00 3.21
2853 4964 6.630203 ATGTGATAACCCCTAAAGTGTACA 57.370 37.500 0.00 0.00 0.00 2.90
2854 4965 6.045072 TGTGATAACCCCTAAAGTGTACAG 57.955 41.667 0.00 0.00 0.00 2.74
2862 4975 4.086457 CCCTAAAGTGTACAGCCCAAAAT 58.914 43.478 0.00 0.00 0.00 1.82
2869 4982 8.644374 AAAGTGTACAGCCCAAAATATAAAGA 57.356 30.769 0.00 0.00 0.00 2.52
2877 4990 6.486993 CAGCCCAAAATATAAAGACCTACTCC 59.513 42.308 0.00 0.00 0.00 3.85
2881 4994 4.886496 AATATAAAGACCTACTCCCGCC 57.114 45.455 0.00 0.00 0.00 6.13
2882 4995 2.170012 ATAAAGACCTACTCCCGCCA 57.830 50.000 0.00 0.00 0.00 5.69
2929 5042 0.036294 GAGCGGTTCTGTTAAGGCCT 60.036 55.000 0.00 0.00 0.00 5.19
2944 5057 1.523938 GCCTCCTTATCGCACACCC 60.524 63.158 0.00 0.00 0.00 4.61
2955 5068 1.532007 TCGCACACCCAAACGATAAAC 59.468 47.619 0.00 0.00 0.00 2.01
2971 5084 7.290857 ACGATAAACTGTGTGTGATTATGAC 57.709 36.000 0.00 0.00 0.00 3.06
2972 5085 6.871492 ACGATAAACTGTGTGTGATTATGACA 59.129 34.615 0.00 0.00 0.00 3.58
2973 5086 7.549134 ACGATAAACTGTGTGTGATTATGACAT 59.451 33.333 0.00 0.00 0.00 3.06
2974 5087 8.390354 CGATAAACTGTGTGTGATTATGACATT 58.610 33.333 0.00 0.00 0.00 2.71
2978 5091 8.846943 AACTGTGTGTGATTATGACATTAAGA 57.153 30.769 0.00 0.00 0.00 2.10
2979 5092 8.846943 ACTGTGTGTGATTATGACATTAAGAA 57.153 30.769 0.00 0.00 0.00 2.52
2980 5093 8.721478 ACTGTGTGTGATTATGACATTAAGAAC 58.279 33.333 0.00 0.00 0.00 3.01
2981 5094 7.738345 TGTGTGTGATTATGACATTAAGAACG 58.262 34.615 0.00 0.00 0.00 3.95
2982 5095 7.148490 TGTGTGTGATTATGACATTAAGAACGG 60.148 37.037 0.00 0.00 0.00 4.44
2983 5096 6.876789 TGTGTGATTATGACATTAAGAACGGT 59.123 34.615 0.00 0.00 0.00 4.83
2984 5097 7.148490 TGTGTGATTATGACATTAAGAACGGTG 60.148 37.037 0.00 0.00 0.00 4.94
2985 5098 6.183360 TGTGATTATGACATTAAGAACGGTGC 60.183 38.462 0.00 0.00 0.00 5.01
2986 5099 5.877564 TGATTATGACATTAAGAACGGTGCA 59.122 36.000 0.00 0.00 0.00 4.57
2987 5100 6.372937 TGATTATGACATTAAGAACGGTGCAA 59.627 34.615 0.00 0.00 0.00 4.08
2988 5101 6.561737 TTATGACATTAAGAACGGTGCAAA 57.438 33.333 0.00 0.00 0.00 3.68
2989 5102 4.902443 TGACATTAAGAACGGTGCAAAA 57.098 36.364 0.00 0.00 0.00 2.44
2990 5103 5.250235 TGACATTAAGAACGGTGCAAAAA 57.750 34.783 0.00 0.00 0.00 1.94
2991 5104 5.837437 TGACATTAAGAACGGTGCAAAAAT 58.163 33.333 0.00 0.00 0.00 1.82
2992 5105 6.276847 TGACATTAAGAACGGTGCAAAAATT 58.723 32.000 0.00 0.00 0.00 1.82
2993 5106 7.426410 TGACATTAAGAACGGTGCAAAAATTA 58.574 30.769 0.00 0.00 0.00 1.40
2994 5107 7.921214 TGACATTAAGAACGGTGCAAAAATTAA 59.079 29.630 0.00 0.00 0.00 1.40
2995 5108 8.649973 ACATTAAGAACGGTGCAAAAATTAAA 57.350 26.923 0.00 0.00 0.00 1.52
2996 5109 9.099454 ACATTAAGAACGGTGCAAAAATTAAAA 57.901 25.926 0.00 0.00 0.00 1.52
2999 5112 7.546778 AAGAACGGTGCAAAAATTAAAATGT 57.453 28.000 0.00 0.00 0.00 2.71
3024 5137 4.083003 TCCTTGGAAATAAATCGTGTGCAC 60.083 41.667 10.75 10.75 0.00 4.57
3042 5155 3.995219 CTCGCCAGCACATCTCGCA 62.995 63.158 0.00 0.00 0.00 5.10
3046 5159 1.164662 GCCAGCACATCTCGCATGAT 61.165 55.000 0.00 0.00 0.00 2.45
3048 5161 1.002792 CCAGCACATCTCGCATGATTG 60.003 52.381 0.00 0.00 0.00 2.67
3060 5173 2.417243 CGCATGATTGGGGGAAGAAAAC 60.417 50.000 0.00 0.00 32.40 2.43
3065 5178 4.403734 TGATTGGGGGAAGAAAACTGTAC 58.596 43.478 0.00 0.00 0.00 2.90
3067 5180 3.955524 TGGGGGAAGAAAACTGTACAA 57.044 42.857 0.00 0.00 0.00 2.41
3068 5181 4.463050 TGGGGGAAGAAAACTGTACAAT 57.537 40.909 0.00 0.00 0.00 2.71
3069 5182 4.810345 TGGGGGAAGAAAACTGTACAATT 58.190 39.130 0.00 0.00 0.00 2.32
3071 5184 4.219944 GGGGGAAGAAAACTGTACAATTCC 59.780 45.833 0.00 4.38 35.14 3.01
3072 5185 4.830600 GGGGAAGAAAACTGTACAATTCCA 59.169 41.667 15.57 0.00 37.13 3.53
3073 5186 5.480422 GGGGAAGAAAACTGTACAATTCCAT 59.520 40.000 15.57 6.63 37.13 3.41
3074 5187 6.389906 GGGAAGAAAACTGTACAATTCCATG 58.610 40.000 15.57 0.00 37.13 3.66
3075 5188 5.863935 GGAAGAAAACTGTACAATTCCATGC 59.136 40.000 0.00 0.00 35.79 4.06
3076 5189 6.403866 AAGAAAACTGTACAATTCCATGCA 57.596 33.333 0.00 0.00 0.00 3.96
3077 5190 5.772521 AGAAAACTGTACAATTCCATGCAC 58.227 37.500 0.00 0.00 0.00 4.57
3078 5191 5.301551 AGAAAACTGTACAATTCCATGCACA 59.698 36.000 0.00 0.00 0.00 4.57
3079 5192 5.528043 AAACTGTACAATTCCATGCACAA 57.472 34.783 0.00 0.00 0.00 3.33
3080 5193 5.528043 AACTGTACAATTCCATGCACAAA 57.472 34.783 0.00 0.00 0.00 2.83
3081 5194 5.125100 ACTGTACAATTCCATGCACAAAG 57.875 39.130 0.00 0.00 0.00 2.77
3082 5195 4.584325 ACTGTACAATTCCATGCACAAAGT 59.416 37.500 0.00 0.00 0.00 2.66
3083 5196 5.068987 ACTGTACAATTCCATGCACAAAGTT 59.931 36.000 0.00 0.00 0.00 2.66
3084 5197 5.527951 TGTACAATTCCATGCACAAAGTTC 58.472 37.500 0.00 0.00 0.00 3.01
3085 5198 4.669206 ACAATTCCATGCACAAAGTTCA 57.331 36.364 0.00 0.00 0.00 3.18
3088 5201 6.056884 ACAATTCCATGCACAAAGTTCAATT 58.943 32.000 0.00 0.00 0.00 2.32
3092 5205 5.668471 TCCATGCACAAAGTTCAATTGAAA 58.332 33.333 22.07 4.98 35.58 2.69
3095 5208 6.258287 CCATGCACAAAGTTCAATTGAAAGAA 59.742 34.615 22.07 0.00 35.58 2.52
3116 5229 1.459592 GCGTGTGCGATAAACTGAACT 59.540 47.619 0.00 0.00 41.33 3.01
3123 5236 5.347635 TGTGCGATAAACTGAACTATCACAC 59.652 40.000 0.00 4.17 37.77 3.82
3125 5238 6.036083 GTGCGATAAACTGAACTATCACACAT 59.964 38.462 5.71 0.00 37.46 3.21
3126 5239 6.035975 TGCGATAAACTGAACTATCACACATG 59.964 38.462 0.00 0.00 0.00 3.21
3127 5240 6.510157 GCGATAAACTGAACTATCACACATGG 60.510 42.308 0.00 0.00 0.00 3.66
3128 5241 6.535150 CGATAAACTGAACTATCACACATGGT 59.465 38.462 0.00 0.00 0.00 3.55
3129 5242 7.064609 CGATAAACTGAACTATCACACATGGTT 59.935 37.037 0.00 0.00 0.00 3.67
3130 5243 5.947228 AACTGAACTATCACACATGGTTG 57.053 39.130 0.00 0.00 0.00 3.77
3131 5244 4.973168 ACTGAACTATCACACATGGTTGT 58.027 39.130 0.00 0.00 36.15 3.32
3144 5257 5.262588 ACATGGTTGTGGAAAGAAAACTC 57.737 39.130 0.00 0.00 33.85 3.01
3145 5258 4.956075 ACATGGTTGTGGAAAGAAAACTCT 59.044 37.500 0.00 0.00 33.85 3.24
3146 5259 4.981806 TGGTTGTGGAAAGAAAACTCTG 57.018 40.909 0.00 0.00 0.00 3.35
3147 5260 4.340617 TGGTTGTGGAAAGAAAACTCTGT 58.659 39.130 0.00 0.00 0.00 3.41
3148 5261 4.157656 TGGTTGTGGAAAGAAAACTCTGTG 59.842 41.667 0.00 0.00 0.00 3.66
3149 5262 4.105486 GTTGTGGAAAGAAAACTCTGTGC 58.895 43.478 0.00 0.00 0.00 4.57
3150 5263 3.351740 TGTGGAAAGAAAACTCTGTGCA 58.648 40.909 0.00 0.00 0.00 4.57
3151 5264 3.761218 TGTGGAAAGAAAACTCTGTGCAA 59.239 39.130 0.00 0.00 27.03 4.08
3152 5265 4.402155 TGTGGAAAGAAAACTCTGTGCAAT 59.598 37.500 0.00 0.00 27.03 3.56
3153 5266 5.105392 TGTGGAAAGAAAACTCTGTGCAATT 60.105 36.000 0.00 0.00 27.03 2.32
3154 5267 6.096141 TGTGGAAAGAAAACTCTGTGCAATTA 59.904 34.615 0.00 0.00 27.03 1.40
3155 5268 6.978080 GTGGAAAGAAAACTCTGTGCAATTAA 59.022 34.615 0.00 0.00 27.03 1.40
3156 5269 7.653311 GTGGAAAGAAAACTCTGTGCAATTAAT 59.347 33.333 0.00 0.00 27.03 1.40
3157 5270 7.652909 TGGAAAGAAAACTCTGTGCAATTAATG 59.347 33.333 0.00 0.00 0.00 1.90
3158 5271 7.653311 GGAAAGAAAACTCTGTGCAATTAATGT 59.347 33.333 0.00 0.00 0.00 2.71
3159 5272 9.677567 GAAAGAAAACTCTGTGCAATTAATGTA 57.322 29.630 0.00 0.00 0.00 2.29
3165 5278 8.792830 AACTCTGTGCAATTAATGTATACAGT 57.207 30.769 11.91 11.47 38.07 3.55
3166 5279 8.792830 ACTCTGTGCAATTAATGTATACAGTT 57.207 30.769 11.57 8.18 38.07 3.16
3167 5280 9.231297 ACTCTGTGCAATTAATGTATACAGTTT 57.769 29.630 11.57 4.08 38.07 2.66
3179 5292 8.547967 AATGTATACAGTTTTATAGATGGGCG 57.452 34.615 11.91 0.00 0.00 6.13
3180 5293 5.929992 TGTATACAGTTTTATAGATGGGCGC 59.070 40.000 0.08 0.00 0.00 6.53
3181 5294 2.210116 ACAGTTTTATAGATGGGCGCG 58.790 47.619 0.00 0.00 0.00 6.86
3182 5295 2.210116 CAGTTTTATAGATGGGCGCGT 58.790 47.619 8.43 0.00 0.00 6.01
3183 5296 2.032894 CAGTTTTATAGATGGGCGCGTG 60.033 50.000 8.43 0.00 0.00 5.34
3184 5297 0.941542 TTTTATAGATGGGCGCGTGC 59.058 50.000 13.78 13.78 41.71 5.34
3185 5298 1.218875 TTTATAGATGGGCGCGTGCG 61.219 55.000 15.81 10.36 44.10 5.34
3186 5299 3.567478 TATAGATGGGCGCGTGCGG 62.567 63.158 15.81 0.00 44.10 5.69
3194 5307 3.408020 GCGCGTGCGGTGAACTAA 61.408 61.111 16.70 0.00 40.19 2.24
3195 5308 2.945615 GCGCGTGCGGTGAACTAAA 61.946 57.895 16.70 0.00 40.19 1.85
3196 5309 1.154727 CGCGTGCGGTGAACTAAAC 60.155 57.895 6.30 0.00 35.56 2.01
3197 5310 1.205820 GCGTGCGGTGAACTAAACC 59.794 57.895 0.00 0.00 0.00 3.27
3198 5311 1.500512 GCGTGCGGTGAACTAAACCA 61.501 55.000 0.00 0.00 37.57 3.67
3199 5312 1.153353 CGTGCGGTGAACTAAACCAT 58.847 50.000 0.00 0.00 37.57 3.55
3200 5313 1.127951 CGTGCGGTGAACTAAACCATC 59.872 52.381 0.00 0.00 37.57 3.51
3201 5314 2.147958 GTGCGGTGAACTAAACCATCA 58.852 47.619 0.00 0.00 37.57 3.07
3202 5315 2.095919 GTGCGGTGAACTAAACCATCAC 60.096 50.000 0.00 0.00 42.08 3.06
3203 5316 2.147958 GCGGTGAACTAAACCATCACA 58.852 47.619 7.36 0.00 44.05 3.58
3204 5317 2.747446 GCGGTGAACTAAACCATCACAT 59.253 45.455 7.36 0.00 44.05 3.21
3205 5318 3.936453 GCGGTGAACTAAACCATCACATA 59.064 43.478 7.36 0.00 44.05 2.29
3206 5319 4.574828 GCGGTGAACTAAACCATCACATAT 59.425 41.667 7.36 0.00 44.05 1.78
3249 5362 2.203401 GTGCTACACAACACACGGTTA 58.797 47.619 0.00 0.00 37.72 2.85
3263 5376 9.613957 CAACACACGGTTATATTGAAACAATTA 57.386 29.630 2.40 0.00 37.72 1.40
3323 5437 7.609960 TGAATGTACCATGTGCAATTTACAAT 58.390 30.769 0.00 0.00 31.17 2.71
3390 5504 3.385193 AGTCGTGTGTGATGATGTTCA 57.615 42.857 0.00 0.00 0.00 3.18
3427 5541 2.760092 AGAAAGTTTTTCAGGCTGCACA 59.240 40.909 10.34 0.00 0.00 4.57
3441 5555 0.249120 TGCACATTGACCTCTACCCG 59.751 55.000 0.00 0.00 0.00 5.28
3443 5557 1.479323 GCACATTGACCTCTACCCGTA 59.521 52.381 0.00 0.00 0.00 4.02
3456 5570 5.869888 CCTCTACCCGTAGCATGAAATATTC 59.130 44.000 0.00 0.00 33.32 1.75
3579 5693 2.029828 ACTACATAGTGCTAGGCATCGC 60.030 50.000 0.00 0.00 41.91 4.58
3590 5704 1.746615 GGCATCGCCTTCTGCTTCA 60.747 57.895 0.00 0.00 46.69 3.02
3611 5725 1.872679 GCTAGCTAAGAACGCGCGT 60.873 57.895 32.73 32.73 0.00 6.01
3654 5768 1.148310 CACGTCCACTGCTTCGATTT 58.852 50.000 0.00 0.00 0.00 2.17
3660 5774 4.491676 GTCCACTGCTTCGATTTACTACA 58.508 43.478 0.00 0.00 0.00 2.74
3667 5781 3.560068 GCTTCGATTTACTACACCATGGG 59.440 47.826 18.09 7.72 0.00 4.00
3723 5837 1.622811 GAAATGGTGTGCAATGGGGAA 59.377 47.619 0.00 0.00 0.00 3.97
3746 5861 4.001226 GGGCCCAACAATTGCGCA 62.001 61.111 19.95 5.66 36.20 6.09
3756 5871 0.956633 CAATTGCGCAGGCCTCATAT 59.043 50.000 11.31 0.00 38.85 1.78
3762 5877 1.270305 GCGCAGGCCTCATATTCTACA 60.270 52.381 0.00 0.00 0.00 2.74
3763 5878 2.408050 CGCAGGCCTCATATTCTACAC 58.592 52.381 0.00 0.00 0.00 2.90
3765 5880 3.397482 GCAGGCCTCATATTCTACACAG 58.603 50.000 0.00 0.00 0.00 3.66
3767 5882 4.684485 GCAGGCCTCATATTCTACACAGTT 60.684 45.833 0.00 0.00 0.00 3.16
3780 5895 3.040147 ACACAGTTAATGTCACGAGGG 57.960 47.619 0.00 0.00 41.41 4.30
3816 5931 1.751927 GCCAACTCATCCAGGCAGG 60.752 63.158 0.00 0.00 46.26 4.85
3821 5936 1.276859 ACTCATCCAGGCAGGCATCA 61.277 55.000 0.00 0.00 37.29 3.07
3871 5986 0.395862 TCCAGAGATGGAGGGTCGTC 60.396 60.000 0.00 0.00 33.38 4.20
3887 6002 1.137513 CGTCGACCTCCAACTCAAAC 58.862 55.000 10.58 0.00 0.00 2.93
3908 6023 0.820226 CGAAGAGTCATGGCTCAGGA 59.180 55.000 28.19 0.00 37.94 3.86
3910 6025 2.626840 GAAGAGTCATGGCTCAGGAAC 58.373 52.381 28.19 10.94 37.94 3.62
3923 6038 0.909610 CAGGAACAGTCCCTAGGGCA 60.910 60.000 24.42 9.45 46.30 5.36
3984 6099 1.907739 GCAGGCTGTAGGGTGATGA 59.092 57.895 17.16 0.00 0.00 2.92
4003 6118 2.202810 GGCAGGCTCTAGCACGAC 60.203 66.667 4.07 0.00 44.36 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.572095 TTAGCGCCATCGGTGTGGAG 62.572 60.000 2.29 0.00 46.76 3.86
2 3 2.651105 TTAGCGCCATCGGTGTGGA 61.651 57.895 2.29 0.00 46.76 4.02
4 5 1.295357 TTGTTAGCGCCATCGGTGTG 61.295 55.000 2.29 0.00 46.76 3.82
5 6 1.004320 TTGTTAGCGCCATCGGTGT 60.004 52.632 2.29 0.00 46.76 4.16
10 11 0.179200 CAACCGTTGTTAGCGCCATC 60.179 55.000 2.29 0.00 32.09 3.51
11 12 1.873165 CAACCGTTGTTAGCGCCAT 59.127 52.632 2.29 0.00 32.09 4.40
13 14 2.127003 GCAACCGTTGTTAGCGCC 60.127 61.111 12.77 0.00 32.09 6.53
14 15 1.154469 GAGCAACCGTTGTTAGCGC 60.154 57.895 12.77 0.00 35.23 5.92
15 16 1.495951 GGAGCAACCGTTGTTAGCG 59.504 57.895 12.77 0.00 35.23 4.26
16 17 1.583495 GGGGAGCAACCGTTGTTAGC 61.583 60.000 12.77 0.00 40.11 3.09
17 18 0.250553 TGGGGAGCAACCGTTGTTAG 60.251 55.000 12.77 0.00 40.11 2.34
18 19 0.402504 ATGGGGAGCAACCGTTGTTA 59.597 50.000 12.77 0.00 40.11 2.41
19 20 0.469144 AATGGGGAGCAACCGTTGTT 60.469 50.000 12.77 6.73 40.11 2.83
20 21 1.152830 AATGGGGAGCAACCGTTGT 59.847 52.632 12.77 0.07 40.11 3.32
21 22 1.586028 CAATGGGGAGCAACCGTTG 59.414 57.895 6.91 6.91 45.46 4.10
22 23 1.152830 ACAATGGGGAGCAACCGTT 59.847 52.632 0.00 0.00 40.11 4.44
23 24 1.603455 CACAATGGGGAGCAACCGT 60.603 57.895 0.00 0.00 40.11 4.83
24 25 0.893270 TTCACAATGGGGAGCAACCG 60.893 55.000 0.00 0.00 40.11 4.44
25 26 0.603065 GTTCACAATGGGGAGCAACC 59.397 55.000 0.00 0.00 38.08 3.77
26 27 1.327303 TGTTCACAATGGGGAGCAAC 58.673 50.000 0.00 0.00 0.00 4.17
27 28 1.686052 GTTGTTCACAATGGGGAGCAA 59.314 47.619 0.00 0.00 38.24 3.91
28 29 1.327303 GTTGTTCACAATGGGGAGCA 58.673 50.000 0.00 0.00 38.24 4.26
29 30 1.327303 TGTTGTTCACAATGGGGAGC 58.673 50.000 0.00 0.00 38.24 4.70
30 31 3.129287 GCTATGTTGTTCACAATGGGGAG 59.871 47.826 0.00 0.00 39.50 4.30
31 32 3.088532 GCTATGTTGTTCACAATGGGGA 58.911 45.455 0.00 0.00 39.50 4.81
32 33 2.159393 CGCTATGTTGTTCACAATGGGG 60.159 50.000 0.00 0.00 39.50 4.96
33 34 2.159393 CCGCTATGTTGTTCACAATGGG 60.159 50.000 0.00 0.00 39.50 4.00
34 35 2.731968 GCCGCTATGTTGTTCACAATGG 60.732 50.000 0.00 0.00 39.50 3.16
35 36 2.518949 GCCGCTATGTTGTTCACAATG 58.481 47.619 0.00 0.00 39.50 2.82
36 37 1.130373 CGCCGCTATGTTGTTCACAAT 59.870 47.619 0.00 0.00 39.50 2.71
37 38 0.515127 CGCCGCTATGTTGTTCACAA 59.485 50.000 0.00 0.00 39.50 3.33
38 39 1.295357 CCGCCGCTATGTTGTTCACA 61.295 55.000 0.00 0.00 40.71 3.58
39 40 1.296056 ACCGCCGCTATGTTGTTCAC 61.296 55.000 0.00 0.00 0.00 3.18
40 41 1.004320 ACCGCCGCTATGTTGTTCA 60.004 52.632 0.00 0.00 0.00 3.18
41 42 1.017177 TCACCGCCGCTATGTTGTTC 61.017 55.000 0.00 0.00 0.00 3.18
42 43 1.004320 TCACCGCCGCTATGTTGTT 60.004 52.632 0.00 0.00 0.00 2.83
43 44 1.447838 CTCACCGCCGCTATGTTGT 60.448 57.895 0.00 0.00 0.00 3.32
44 45 2.173669 CCTCACCGCCGCTATGTTG 61.174 63.158 0.00 0.00 0.00 3.33
45 46 2.186903 CCTCACCGCCGCTATGTT 59.813 61.111 0.00 0.00 0.00 2.71
46 47 4.530857 GCCTCACCGCCGCTATGT 62.531 66.667 0.00 0.00 0.00 2.29
47 48 4.529219 TGCCTCACCGCCGCTATG 62.529 66.667 0.00 0.00 0.00 2.23
48 49 4.530857 GTGCCTCACCGCCGCTAT 62.531 66.667 0.00 0.00 0.00 2.97
70 71 2.792947 TAGAGGAATCGCGGGTGGC 61.793 63.158 6.13 0.00 38.69 5.01
71 72 1.067582 GTAGAGGAATCGCGGGTGG 59.932 63.158 6.13 0.00 0.00 4.61
72 73 1.299165 CGTAGAGGAATCGCGGGTG 60.299 63.158 6.13 0.00 0.00 4.61
73 74 1.452651 TCGTAGAGGAATCGCGGGT 60.453 57.895 6.13 0.00 0.00 5.28
74 75 3.428797 TCGTAGAGGAATCGCGGG 58.571 61.111 6.13 0.00 0.00 6.13
347 348 1.883544 CGATCAGCAGCAGAGCCTG 60.884 63.158 0.00 0.00 35.93 4.85
348 349 2.295472 GACGATCAGCAGCAGAGCCT 62.295 60.000 0.00 0.00 34.23 4.58
349 350 1.882167 GACGATCAGCAGCAGAGCC 60.882 63.158 0.00 0.00 34.23 4.70
350 351 0.530211 ATGACGATCAGCAGCAGAGC 60.530 55.000 0.00 0.00 0.00 4.09
351 352 2.034432 ACTATGACGATCAGCAGCAGAG 59.966 50.000 0.00 0.00 0.00 3.35
352 353 2.027385 ACTATGACGATCAGCAGCAGA 58.973 47.619 0.00 0.00 0.00 4.26
353 354 2.125685 CACTATGACGATCAGCAGCAG 58.874 52.381 0.00 0.00 0.00 4.24
354 355 1.750778 TCACTATGACGATCAGCAGCA 59.249 47.619 0.00 0.00 0.00 4.41
355 356 2.392821 CTCACTATGACGATCAGCAGC 58.607 52.381 0.00 0.00 0.00 5.25
356 357 2.861750 GCCTCACTATGACGATCAGCAG 60.862 54.545 0.00 0.00 0.00 4.24
357 358 1.067669 GCCTCACTATGACGATCAGCA 59.932 52.381 0.00 0.00 0.00 4.41
358 359 1.067669 TGCCTCACTATGACGATCAGC 59.932 52.381 0.00 0.00 0.00 4.26
359 360 2.620585 TCTGCCTCACTATGACGATCAG 59.379 50.000 0.00 0.00 0.00 2.90
360 361 2.620585 CTCTGCCTCACTATGACGATCA 59.379 50.000 0.00 0.00 0.00 2.92
361 362 2.881513 TCTCTGCCTCACTATGACGATC 59.118 50.000 0.00 0.00 0.00 3.69
362 363 2.937519 TCTCTGCCTCACTATGACGAT 58.062 47.619 0.00 0.00 0.00 3.73
363 364 2.420058 TCTCTGCCTCACTATGACGA 57.580 50.000 0.00 0.00 0.00 4.20
364 365 2.685388 TCTTCTCTGCCTCACTATGACG 59.315 50.000 0.00 0.00 0.00 4.35
365 366 3.068024 CCTCTTCTCTGCCTCACTATGAC 59.932 52.174 0.00 0.00 0.00 3.06
366 367 3.053320 TCCTCTTCTCTGCCTCACTATGA 60.053 47.826 0.00 0.00 0.00 2.15
367 368 3.068024 GTCCTCTTCTCTGCCTCACTATG 59.932 52.174 0.00 0.00 0.00 2.23
368 369 3.295973 GTCCTCTTCTCTGCCTCACTAT 58.704 50.000 0.00 0.00 0.00 2.12
369 370 2.041755 TGTCCTCTTCTCTGCCTCACTA 59.958 50.000 0.00 0.00 0.00 2.74
370 371 1.203112 TGTCCTCTTCTCTGCCTCACT 60.203 52.381 0.00 0.00 0.00 3.41
371 372 1.204467 CTGTCCTCTTCTCTGCCTCAC 59.796 57.143 0.00 0.00 0.00 3.51
372 373 1.554836 CTGTCCTCTTCTCTGCCTCA 58.445 55.000 0.00 0.00 0.00 3.86
373 374 0.823460 CCTGTCCTCTTCTCTGCCTC 59.177 60.000 0.00 0.00 0.00 4.70
374 375 0.617249 CCCTGTCCTCTTCTCTGCCT 60.617 60.000 0.00 0.00 0.00 4.75
375 376 0.907230 ACCCTGTCCTCTTCTCTGCC 60.907 60.000 0.00 0.00 0.00 4.85
376 377 0.534873 GACCCTGTCCTCTTCTCTGC 59.465 60.000 0.00 0.00 0.00 4.26
377 378 0.814457 CGACCCTGTCCTCTTCTCTG 59.186 60.000 0.00 0.00 0.00 3.35
378 379 0.323908 CCGACCCTGTCCTCTTCTCT 60.324 60.000 0.00 0.00 0.00 3.10
379 380 1.950973 GCCGACCCTGTCCTCTTCTC 61.951 65.000 0.00 0.00 0.00 2.87
380 381 1.985116 GCCGACCCTGTCCTCTTCT 60.985 63.158 0.00 0.00 0.00 2.85
381 382 2.579738 GCCGACCCTGTCCTCTTC 59.420 66.667 0.00 0.00 0.00 2.87
382 383 3.382832 CGCCGACCCTGTCCTCTT 61.383 66.667 0.00 0.00 0.00 2.85
399 400 3.434319 CAGCCGTCATGTGGTGCC 61.434 66.667 8.24 0.00 0.00 5.01
400 401 3.434319 CCAGCCGTCATGTGGTGC 61.434 66.667 8.24 0.94 0.00 5.01
401 402 3.434319 GCCAGCCGTCATGTGGTG 61.434 66.667 8.24 6.71 33.51 4.17
402 403 3.196207 AAGCCAGCCGTCATGTGGT 62.196 57.895 8.24 0.00 33.51 4.16
403 404 2.360350 AAGCCAGCCGTCATGTGG 60.360 61.111 0.00 0.00 0.00 4.17
404 405 1.968017 ACAAGCCAGCCGTCATGTG 60.968 57.895 0.00 0.00 0.00 3.21
405 406 1.968017 CACAAGCCAGCCGTCATGT 60.968 57.895 0.00 0.00 0.00 3.21
406 407 2.693762 CCACAAGCCAGCCGTCATG 61.694 63.158 0.00 0.00 0.00 3.07
407 408 2.202236 ATCCACAAGCCAGCCGTCAT 62.202 55.000 0.00 0.00 0.00 3.06
408 409 2.894257 ATCCACAAGCCAGCCGTCA 61.894 57.895 0.00 0.00 0.00 4.35
409 410 2.045926 ATCCACAAGCCAGCCGTC 60.046 61.111 0.00 0.00 0.00 4.79
410 411 2.360350 CATCCACAAGCCAGCCGT 60.360 61.111 0.00 0.00 0.00 5.68
411 412 3.818787 GCATCCACAAGCCAGCCG 61.819 66.667 0.00 0.00 0.00 5.52
412 413 2.362120 AGCATCCACAAGCCAGCC 60.362 61.111 0.00 0.00 0.00 4.85
413 414 2.758089 CGAGCATCCACAAGCCAGC 61.758 63.158 0.00 0.00 0.00 4.85
414 415 2.110967 CCGAGCATCCACAAGCCAG 61.111 63.158 0.00 0.00 0.00 4.85
415 416 1.913951 ATCCGAGCATCCACAAGCCA 61.914 55.000 0.00 0.00 0.00 4.75
416 417 1.153086 ATCCGAGCATCCACAAGCC 60.153 57.895 0.00 0.00 0.00 4.35
417 418 1.162800 GGATCCGAGCATCCACAAGC 61.163 60.000 0.00 0.00 42.02 4.01
418 419 0.877649 CGGATCCGAGCATCCACAAG 60.878 60.000 30.62 0.00 42.50 3.16
419 420 1.143838 CGGATCCGAGCATCCACAA 59.856 57.895 30.62 0.00 42.50 3.33
420 421 2.016393 GACGGATCCGAGCATCCACA 62.016 60.000 39.55 0.00 42.50 4.17
421 422 1.300233 GACGGATCCGAGCATCCAC 60.300 63.158 39.55 15.23 42.50 4.02
422 423 2.845550 CGACGGATCCGAGCATCCA 61.846 63.158 39.55 0.00 42.50 3.41
423 424 2.049985 CGACGGATCCGAGCATCC 60.050 66.667 39.55 18.32 42.83 3.51
424 425 1.370657 GTCGACGGATCCGAGCATC 60.371 63.158 39.55 24.56 42.83 3.91
425 426 2.722487 GTCGACGGATCCGAGCAT 59.278 61.111 39.55 18.46 42.83 3.79
428 429 1.374343 TTCTGGTCGACGGATCCGAG 61.374 60.000 39.55 29.60 42.83 4.63
429 430 1.377594 TTCTGGTCGACGGATCCGA 60.378 57.895 39.55 16.05 42.83 4.55
430 431 1.226603 GTTCTGGTCGACGGATCCG 60.227 63.158 32.20 32.20 46.03 4.18
431 432 1.141234 GGTTCTGGTCGACGGATCC 59.859 63.158 9.92 13.93 37.22 3.36
432 433 1.226603 CGGTTCTGGTCGACGGATC 60.227 63.158 9.92 9.14 33.61 3.36
433 434 2.882876 CGGTTCTGGTCGACGGAT 59.117 61.111 9.92 0.00 33.61 4.18
435 436 4.430765 CCCGGTTCTGGTCGACGG 62.431 72.222 9.92 5.39 43.89 4.79
436 437 4.430765 CCCCGGTTCTGGTCGACG 62.431 72.222 9.92 0.00 0.00 5.12
437 438 4.754667 GCCCCGGTTCTGGTCGAC 62.755 72.222 7.13 7.13 0.00 4.20
449 450 4.778143 CCTTCTTCCACCGCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
454 455 4.778143 CCCCGCCTTCTTCCACCG 62.778 72.222 0.00 0.00 0.00 4.94
456 457 4.344865 TGCCCCGCCTTCTTCCAC 62.345 66.667 0.00 0.00 0.00 4.02
457 458 4.344865 GTGCCCCGCCTTCTTCCA 62.345 66.667 0.00 0.00 0.00 3.53
459 460 4.699522 ACGTGCCCCGCCTTCTTC 62.700 66.667 0.00 0.00 41.42 2.87
460 461 4.699522 GACGTGCCCCGCCTTCTT 62.700 66.667 0.00 0.00 41.42 2.52
479 480 4.821589 CTCCACCTTCCTCCGCGC 62.822 72.222 0.00 0.00 0.00 6.86
480 481 3.382832 ACTCCACCTTCCTCCGCG 61.383 66.667 0.00 0.00 0.00 6.46
481 482 2.266055 CACTCCACCTTCCTCCGC 59.734 66.667 0.00 0.00 0.00 5.54
482 483 2.660064 CCCACTCCACCTTCCTCCG 61.660 68.421 0.00 0.00 0.00 4.63
483 484 2.301738 CCCCACTCCACCTTCCTCC 61.302 68.421 0.00 0.00 0.00 4.30
484 485 2.972819 GCCCCACTCCACCTTCCTC 61.973 68.421 0.00 0.00 0.00 3.71
485 486 2.936032 GCCCCACTCCACCTTCCT 60.936 66.667 0.00 0.00 0.00 3.36
486 487 4.048470 GGCCCCACTCCACCTTCC 62.048 72.222 0.00 0.00 0.00 3.46
487 488 2.616458 ATGGCCCCACTCCACCTTC 61.616 63.158 0.00 0.00 36.26 3.46
488 489 2.535317 ATGGCCCCACTCCACCTT 60.535 61.111 0.00 0.00 36.26 3.50
489 490 3.341629 CATGGCCCCACTCCACCT 61.342 66.667 0.00 0.00 36.26 4.00
490 491 4.447342 CCATGGCCCCACTCCACC 62.447 72.222 0.00 0.00 36.26 4.61
502 503 3.118454 GTCGGTGTCGTGCCATGG 61.118 66.667 7.63 7.63 37.69 3.66
503 504 3.478394 CGTCGGTGTCGTGCCATG 61.478 66.667 0.00 0.00 37.69 3.66
504 505 4.735132 CCGTCGGTGTCGTGCCAT 62.735 66.667 2.08 0.00 37.69 4.40
508 509 3.834447 TTCTGCCGTCGGTGTCGTG 62.834 63.158 13.94 0.00 37.69 4.35
509 510 3.553437 CTTCTGCCGTCGGTGTCGT 62.553 63.158 13.94 0.00 37.69 4.34
510 511 2.543687 ATCTTCTGCCGTCGGTGTCG 62.544 60.000 13.94 0.00 37.82 4.35
511 512 1.078759 CATCTTCTGCCGTCGGTGTC 61.079 60.000 13.94 0.00 0.00 3.67
512 513 1.079819 CATCTTCTGCCGTCGGTGT 60.080 57.895 13.94 0.00 0.00 4.16
513 514 1.811266 CCATCTTCTGCCGTCGGTG 60.811 63.158 13.94 6.61 0.00 4.94
514 515 1.949847 CTCCATCTTCTGCCGTCGGT 61.950 60.000 13.94 0.00 0.00 4.69
515 516 1.227089 CTCCATCTTCTGCCGTCGG 60.227 63.158 6.99 6.99 0.00 4.79
516 517 1.227089 CCTCCATCTTCTGCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
517 518 0.460987 CACCTCCATCTTCTGCCGTC 60.461 60.000 0.00 0.00 0.00 4.79
518 519 0.904865 TCACCTCCATCTTCTGCCGT 60.905 55.000 0.00 0.00 0.00 5.68
519 520 0.467384 ATCACCTCCATCTTCTGCCG 59.533 55.000 0.00 0.00 0.00 5.69
520 521 1.476471 CCATCACCTCCATCTTCTGCC 60.476 57.143 0.00 0.00 0.00 4.85
521 522 1.211457 ACCATCACCTCCATCTTCTGC 59.789 52.381 0.00 0.00 0.00 4.26
522 523 2.482664 CGACCATCACCTCCATCTTCTG 60.483 54.545 0.00 0.00 0.00 3.02
523 524 1.759445 CGACCATCACCTCCATCTTCT 59.241 52.381 0.00 0.00 0.00 2.85
524 525 1.808133 GCGACCATCACCTCCATCTTC 60.808 57.143 0.00 0.00 0.00 2.87
525 526 0.179000 GCGACCATCACCTCCATCTT 59.821 55.000 0.00 0.00 0.00 2.40
526 527 1.690219 GGCGACCATCACCTCCATCT 61.690 60.000 0.00 0.00 0.00 2.90
527 528 1.227674 GGCGACCATCACCTCCATC 60.228 63.158 0.00 0.00 0.00 3.51
528 529 2.911143 GGCGACCATCACCTCCAT 59.089 61.111 0.00 0.00 0.00 3.41
529 530 3.770040 CGGCGACCATCACCTCCA 61.770 66.667 0.00 0.00 0.00 3.86
530 531 4.530857 CCGGCGACCATCACCTCC 62.531 72.222 9.30 0.00 0.00 4.30
534 535 3.499737 CTTGCCGGCGACCATCAC 61.500 66.667 23.90 0.00 0.00 3.06
535 536 4.776322 CCTTGCCGGCGACCATCA 62.776 66.667 23.90 0.00 0.00 3.07
540 541 4.162690 ATCTCCCTTGCCGGCGAC 62.163 66.667 23.90 0.00 0.00 5.19
541 542 4.161295 CATCTCCCTTGCCGGCGA 62.161 66.667 23.90 20.69 0.00 5.54
543 544 4.883354 CCCATCTCCCTTGCCGGC 62.883 72.222 22.73 22.73 0.00 6.13
544 545 3.089874 TCCCATCTCCCTTGCCGG 61.090 66.667 0.00 0.00 0.00 6.13
545 546 2.507944 CTCCCATCTCCCTTGCCG 59.492 66.667 0.00 0.00 0.00 5.69
546 547 2.003548 ACCTCCCATCTCCCTTGCC 61.004 63.158 0.00 0.00 0.00 4.52
547 548 1.225704 CACCTCCCATCTCCCTTGC 59.774 63.158 0.00 0.00 0.00 4.01
548 549 1.419387 GATCACCTCCCATCTCCCTTG 59.581 57.143 0.00 0.00 0.00 3.61
549 550 1.010046 TGATCACCTCCCATCTCCCTT 59.990 52.381 0.00 0.00 0.00 3.95
550 551 0.644380 TGATCACCTCCCATCTCCCT 59.356 55.000 0.00 0.00 0.00 4.20
551 552 1.350351 CATGATCACCTCCCATCTCCC 59.650 57.143 0.00 0.00 0.00 4.30
552 553 1.271271 GCATGATCACCTCCCATCTCC 60.271 57.143 0.00 0.00 0.00 3.71
553 554 1.419012 TGCATGATCACCTCCCATCTC 59.581 52.381 0.00 0.00 0.00 2.75
554 555 1.514983 TGCATGATCACCTCCCATCT 58.485 50.000 0.00 0.00 0.00 2.90
555 556 2.581216 ATGCATGATCACCTCCCATC 57.419 50.000 0.00 0.00 0.00 3.51
556 557 3.323774 AAATGCATGATCACCTCCCAT 57.676 42.857 0.00 0.00 0.00 4.00
557 558 2.832643 AAATGCATGATCACCTCCCA 57.167 45.000 0.00 0.00 0.00 4.37
558 559 3.025978 TGAAAATGCATGATCACCTCCC 58.974 45.455 0.00 0.00 0.00 4.30
559 560 4.931661 ATGAAAATGCATGATCACCTCC 57.068 40.909 14.82 0.00 0.00 4.30
560 561 6.485984 ACTCTATGAAAATGCATGATCACCTC 59.514 38.462 14.82 0.00 0.00 3.85
561 562 6.262496 CACTCTATGAAAATGCATGATCACCT 59.738 38.462 14.82 5.43 0.00 4.00
562 563 6.436261 CACTCTATGAAAATGCATGATCACC 58.564 40.000 14.82 0.00 0.00 4.02
563 564 6.436261 CCACTCTATGAAAATGCATGATCAC 58.564 40.000 14.82 0.93 0.00 3.06
564 565 5.533528 CCCACTCTATGAAAATGCATGATCA 59.466 40.000 14.85 14.85 0.00 2.92
565 566 5.564259 GCCCACTCTATGAAAATGCATGATC 60.564 44.000 0.00 2.14 0.00 2.92
566 567 4.280174 GCCCACTCTATGAAAATGCATGAT 59.720 41.667 0.00 0.00 0.00 2.45
567 568 3.633525 GCCCACTCTATGAAAATGCATGA 59.366 43.478 0.00 0.00 0.00 3.07
568 569 3.635373 AGCCCACTCTATGAAAATGCATG 59.365 43.478 0.00 0.00 0.00 4.06
569 570 3.907221 AGCCCACTCTATGAAAATGCAT 58.093 40.909 0.00 0.00 0.00 3.96
570 571 3.370840 AGCCCACTCTATGAAAATGCA 57.629 42.857 0.00 0.00 0.00 3.96
571 572 3.817647 CCTAGCCCACTCTATGAAAATGC 59.182 47.826 0.00 0.00 0.00 3.56
572 573 3.817647 GCCTAGCCCACTCTATGAAAATG 59.182 47.826 0.00 0.00 0.00 2.32
573 574 3.718956 AGCCTAGCCCACTCTATGAAAAT 59.281 43.478 0.00 0.00 0.00 1.82
574 575 3.115390 AGCCTAGCCCACTCTATGAAAA 58.885 45.455 0.00 0.00 0.00 2.29
575 576 2.764269 AGCCTAGCCCACTCTATGAAA 58.236 47.619 0.00 0.00 0.00 2.69
576 577 2.478872 AGCCTAGCCCACTCTATGAA 57.521 50.000 0.00 0.00 0.00 2.57
577 578 2.225142 CCTAGCCTAGCCCACTCTATGA 60.225 54.545 0.00 0.00 0.00 2.15
578 579 2.175202 CCTAGCCTAGCCCACTCTATG 58.825 57.143 0.00 0.00 0.00 2.23
579 580 1.551329 GCCTAGCCTAGCCCACTCTAT 60.551 57.143 0.00 0.00 0.00 1.98
580 581 0.178958 GCCTAGCCTAGCCCACTCTA 60.179 60.000 0.00 0.00 0.00 2.43
581 582 1.458588 GCCTAGCCTAGCCCACTCT 60.459 63.158 0.00 0.00 0.00 3.24
582 583 1.458588 AGCCTAGCCTAGCCCACTC 60.459 63.158 0.00 0.00 0.00 3.51
583 584 1.458588 GAGCCTAGCCTAGCCCACT 60.459 63.158 0.00 0.00 0.00 4.00
584 585 2.862223 CGAGCCTAGCCTAGCCCAC 61.862 68.421 0.00 0.00 0.00 4.61
585 586 2.521950 CGAGCCTAGCCTAGCCCA 60.522 66.667 0.00 0.00 0.00 5.36
586 587 3.307108 CCGAGCCTAGCCTAGCCC 61.307 72.222 0.00 0.00 0.00 5.19
587 588 3.307108 CCCGAGCCTAGCCTAGCC 61.307 72.222 0.00 0.00 0.00 3.93
588 589 3.307108 CCCCGAGCCTAGCCTAGC 61.307 72.222 0.00 0.00 0.00 3.42
589 590 1.049289 AAACCCCGAGCCTAGCCTAG 61.049 60.000 0.00 0.00 0.00 3.02
590 591 1.002533 AAACCCCGAGCCTAGCCTA 59.997 57.895 0.00 0.00 0.00 3.93
591 592 2.285442 AAACCCCGAGCCTAGCCT 60.285 61.111 0.00 0.00 0.00 4.58
592 593 2.124695 CAAACCCCGAGCCTAGCC 60.125 66.667 0.00 0.00 0.00 3.93
593 594 2.124695 CCAAACCCCGAGCCTAGC 60.125 66.667 0.00 0.00 0.00 3.42
594 595 2.124695 GCCAAACCCCGAGCCTAG 60.125 66.667 0.00 0.00 0.00 3.02
595 596 3.723922 GGCCAAACCCCGAGCCTA 61.724 66.667 0.00 0.00 42.34 3.93
598 599 3.860930 TTCTGGCCAAACCCCGAGC 62.861 63.158 7.01 0.00 37.83 5.03
599 600 0.825840 TTTTCTGGCCAAACCCCGAG 60.826 55.000 7.01 0.00 37.83 4.63
600 601 0.825840 CTTTTCTGGCCAAACCCCGA 60.826 55.000 7.01 0.00 37.83 5.14
601 602 0.825840 TCTTTTCTGGCCAAACCCCG 60.826 55.000 7.01 0.00 37.83 5.73
602 603 0.679505 GTCTTTTCTGGCCAAACCCC 59.320 55.000 7.01 0.00 37.83 4.95
603 604 0.679505 GGTCTTTTCTGGCCAAACCC 59.320 55.000 7.01 0.00 37.83 4.11
604 605 1.341209 CTGGTCTTTTCTGGCCAAACC 59.659 52.381 7.01 8.40 39.84 3.27
605 606 2.031870 ACTGGTCTTTTCTGGCCAAAC 58.968 47.619 7.01 0.00 0.00 2.93
606 607 2.306847 GACTGGTCTTTTCTGGCCAAA 58.693 47.619 7.01 1.05 0.00 3.28
607 608 1.214175 TGACTGGTCTTTTCTGGCCAA 59.786 47.619 7.01 0.00 0.00 4.52
616 617 4.895297 ACATGGACATTTTGACTGGTCTTT 59.105 37.500 0.00 0.00 0.00 2.52
622 623 2.353011 GGCCACATGGACATTTTGACTG 60.353 50.000 0.87 0.00 44.76 3.51
671 674 0.325671 TGACAGATGGGTCTCCCTCC 60.326 60.000 6.38 0.00 45.70 4.30
685 688 4.317291 GCGCTTTAAACACGTTTATGACAG 59.683 41.667 0.00 0.58 35.27 3.51
686 689 4.024725 AGCGCTTTAAACACGTTTATGACA 60.025 37.500 2.64 0.00 35.27 3.58
696 699 2.964768 CGAACAAGAGCGCTTTAAACAC 59.035 45.455 13.26 0.00 30.14 3.32
708 711 3.318017 ACCTTTGATCGACGAACAAGAG 58.682 45.455 18.16 16.88 0.00 2.85
713 716 3.426525 ACGTAAACCTTTGATCGACGAAC 59.573 43.478 0.00 0.00 33.30 3.95
715 718 3.287312 ACGTAAACCTTTGATCGACGA 57.713 42.857 0.00 0.00 33.30 4.20
791 794 0.109319 CGGGTTTGCCGAAAGAATGG 60.109 55.000 0.00 0.00 34.97 3.16
796 799 2.622962 GGGACGGGTTTGCCGAAAG 61.623 63.158 0.00 0.00 34.97 2.62
819 822 2.486592 GGAATTACAGAAACCCACCACG 59.513 50.000 0.00 0.00 0.00 4.94
830 833 6.609212 ACTTCTGCAGATCTAGGAATTACAGA 59.391 38.462 19.04 0.00 0.00 3.41
834 837 6.384015 TCCAACTTCTGCAGATCTAGGAATTA 59.616 38.462 19.04 0.00 0.00 1.40
889 892 0.611714 GGGTTCTCGTAGGCCAAAGA 59.388 55.000 5.01 0.00 0.00 2.52
906 909 0.035056 AAGAGGTCAGAAATGGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
1008 1020 2.555199 GATGCCTGCTCGTTGATTAGT 58.445 47.619 0.00 0.00 0.00 2.24
1039 1058 5.760253 ACTCGATGTTTTGACTCTTGTGATT 59.240 36.000 0.00 0.00 0.00 2.57
1287 1336 4.280019 GGCGGGTTGGTGAAGGGT 62.280 66.667 0.00 0.00 0.00 4.34
1385 1434 4.143030 GCATGATCCGATCGGTGATTAAAG 60.143 45.833 32.15 16.58 36.47 1.85
1752 3725 1.497991 TTGAGGACTCGTTGCGAAAG 58.502 50.000 0.00 0.00 34.74 2.62
1779 3796 0.466372 GCCCTCCCCTAATCAGCAAC 60.466 60.000 0.00 0.00 0.00 4.17
1780 3797 0.624500 AGCCCTCCCCTAATCAGCAA 60.625 55.000 0.00 0.00 0.00 3.91
1781 3798 1.004758 AGCCCTCCCCTAATCAGCA 59.995 57.895 0.00 0.00 0.00 4.41
1840 3857 1.360551 CGATCTCGCCCAGGTACAG 59.639 63.158 0.00 0.00 0.00 2.74
1851 3868 2.476873 AGTCGTTGAATCCGATCTCG 57.523 50.000 0.00 0.00 36.62 4.04
1978 3995 3.241530 AGCTGAGTTGACCGGCCA 61.242 61.111 0.00 0.00 36.61 5.36
1996 4013 0.616679 TAGCTAGGGTGGGTGTGGTC 60.617 60.000 0.00 0.00 0.00 4.02
2017 4035 9.968743 GAGACAAATACGGTAAAATTGAAGTAG 57.031 33.333 14.60 0.00 0.00 2.57
2020 4038 7.515643 ACGAGACAAATACGGTAAAATTGAAG 58.484 34.615 14.60 7.89 0.00 3.02
2023 4041 6.739550 GGAACGAGACAAATACGGTAAAATTG 59.260 38.462 0.00 1.53 0.00 2.32
2024 4042 6.427547 TGGAACGAGACAAATACGGTAAAATT 59.572 34.615 0.00 0.00 0.00 1.82
2025 4043 5.933463 TGGAACGAGACAAATACGGTAAAAT 59.067 36.000 0.00 0.00 0.00 1.82
2026 4044 5.177327 GTGGAACGAGACAAATACGGTAAAA 59.823 40.000 0.00 0.00 0.00 1.52
2027 4045 4.685628 GTGGAACGAGACAAATACGGTAAA 59.314 41.667 0.00 0.00 0.00 2.01
2030 4048 2.680577 GTGGAACGAGACAAATACGGT 58.319 47.619 0.00 0.00 0.00 4.83
2048 4071 2.580470 GATCGCGTCCTGCATCGTG 61.580 63.158 5.77 11.49 46.97 4.35
2050 4073 3.390017 CGATCGCGTCCTGCATCG 61.390 66.667 5.77 8.73 46.97 3.84
2152 4175 2.711924 GGTCGTAGTAGTCGCCCG 59.288 66.667 0.00 0.00 0.00 6.13
2429 4453 0.036010 AGCCTGCCACAGATACACAC 60.036 55.000 0.00 0.00 32.44 3.82
2433 4457 0.811616 CCGAAGCCTGCCACAGATAC 60.812 60.000 0.00 0.00 32.44 2.24
2559 4586 1.014352 CCATCCCACGAAACGGATTC 58.986 55.000 0.00 0.00 36.72 2.52
2560 4587 0.393808 CCCATCCCACGAAACGGATT 60.394 55.000 0.00 0.00 36.72 3.01
2561 4588 1.223487 CCCATCCCACGAAACGGAT 59.777 57.895 0.00 0.00 39.56 4.18
2693 4778 4.066490 CCCGTTACATCTACAACACCAAA 58.934 43.478 0.00 0.00 0.00 3.28
2792 4877 9.354673 TCTTTTCCCATCTTATAATCCATGAAC 57.645 33.333 0.00 0.00 0.00 3.18
2830 4933 6.630203 TGTACACTTTAGGGGTTATCACAT 57.370 37.500 0.00 0.00 0.00 3.21
2834 4937 4.449131 GGCTGTACACTTTAGGGGTTATC 58.551 47.826 0.00 0.00 0.00 1.75
2853 4964 6.410504 GGGAGTAGGTCTTTATATTTTGGGCT 60.411 42.308 0.00 0.00 0.00 5.19
2854 4965 5.768662 GGGAGTAGGTCTTTATATTTTGGGC 59.231 44.000 0.00 0.00 0.00 5.36
2862 4975 2.961062 GTGGCGGGAGTAGGTCTTTATA 59.039 50.000 0.00 0.00 0.00 0.98
2869 4982 0.691078 ATCATGTGGCGGGAGTAGGT 60.691 55.000 0.00 0.00 0.00 3.08
2881 4994 3.943381 AGTGTAGTGCATTCCATCATGTG 59.057 43.478 0.00 0.00 0.00 3.21
2882 4995 4.226427 AGTGTAGTGCATTCCATCATGT 57.774 40.909 0.00 0.00 0.00 3.21
2899 5012 0.038159 GAACCGCTCTGCACTAGTGT 60.038 55.000 23.44 0.45 0.00 3.55
2929 5042 1.816074 GTTTGGGTGTGCGATAAGGA 58.184 50.000 0.00 0.00 0.00 3.36
2944 5057 8.227119 TCATAATCACACACAGTTTATCGTTTG 58.773 33.333 0.00 0.00 0.00 2.93
2955 5068 7.899841 CGTTCTTAATGTCATAATCACACACAG 59.100 37.037 0.00 0.00 0.00 3.66
2973 5086 9.099454 ACATTTTAATTTTTGCACCGTTCTTAA 57.901 25.926 0.00 0.00 0.00 1.85
2974 5087 8.543774 CACATTTTAATTTTTGCACCGTTCTTA 58.456 29.630 0.00 0.00 0.00 2.10
2975 5088 7.065204 ACACATTTTAATTTTTGCACCGTTCTT 59.935 29.630 0.00 0.00 0.00 2.52
2976 5089 6.536941 ACACATTTTAATTTTTGCACCGTTCT 59.463 30.769 0.00 0.00 0.00 3.01
2977 5090 6.710611 ACACATTTTAATTTTTGCACCGTTC 58.289 32.000 0.00 0.00 0.00 3.95
2978 5091 6.238239 GGACACATTTTAATTTTTGCACCGTT 60.238 34.615 0.00 0.00 0.00 4.44
2979 5092 5.235401 GGACACATTTTAATTTTTGCACCGT 59.765 36.000 0.00 0.00 0.00 4.83
2980 5093 5.465056 AGGACACATTTTAATTTTTGCACCG 59.535 36.000 0.00 0.00 0.00 4.94
2981 5094 6.859420 AGGACACATTTTAATTTTTGCACC 57.141 33.333 0.00 0.00 0.00 5.01
2982 5095 7.011857 TCCAAGGACACATTTTAATTTTTGCAC 59.988 33.333 0.00 0.00 0.00 4.57
2983 5096 7.050377 TCCAAGGACACATTTTAATTTTTGCA 58.950 30.769 0.00 0.00 0.00 4.08
2984 5097 7.489574 TCCAAGGACACATTTTAATTTTTGC 57.510 32.000 0.00 0.00 0.00 3.68
2991 5104 9.632807 CGATTTATTTCCAAGGACACATTTTAA 57.367 29.630 0.00 0.00 0.00 1.52
2992 5105 8.798402 ACGATTTATTTCCAAGGACACATTTTA 58.202 29.630 0.00 0.00 0.00 1.52
2993 5106 7.598493 CACGATTTATTTCCAAGGACACATTTT 59.402 33.333 0.00 0.00 0.00 1.82
2994 5107 7.090173 CACGATTTATTTCCAAGGACACATTT 58.910 34.615 0.00 0.00 0.00 2.32
2995 5108 6.208599 ACACGATTTATTTCCAAGGACACATT 59.791 34.615 0.00 0.00 0.00 2.71
2996 5109 5.710099 ACACGATTTATTTCCAAGGACACAT 59.290 36.000 0.00 0.00 0.00 3.21
2997 5110 5.049060 CACACGATTTATTTCCAAGGACACA 60.049 40.000 0.00 0.00 0.00 3.72
2998 5111 5.390613 CACACGATTTATTTCCAAGGACAC 58.609 41.667 0.00 0.00 0.00 3.67
2999 5112 4.083003 GCACACGATTTATTTCCAAGGACA 60.083 41.667 0.00 0.00 0.00 4.02
3024 5137 3.260483 GCGAGATGTGCTGGCGAG 61.260 66.667 0.00 0.00 38.59 5.03
3042 5155 4.132122 ACAGTTTTCTTCCCCCAATCAT 57.868 40.909 0.00 0.00 0.00 2.45
3046 5159 3.955524 TGTACAGTTTTCTTCCCCCAA 57.044 42.857 0.00 0.00 0.00 4.12
3048 5161 4.219944 GGAATTGTACAGTTTTCTTCCCCC 59.780 45.833 4.98 0.00 0.00 5.40
3060 5173 5.125100 ACTTTGTGCATGGAATTGTACAG 57.875 39.130 0.00 0.00 42.03 2.74
3065 5178 6.203145 TCAATTGAACTTTGTGCATGGAATTG 59.797 34.615 5.45 0.00 0.00 2.32
3067 5180 5.856156 TCAATTGAACTTTGTGCATGGAAT 58.144 33.333 5.45 0.00 0.00 3.01
3068 5181 5.273674 TCAATTGAACTTTGTGCATGGAA 57.726 34.783 5.45 0.00 0.00 3.53
3069 5182 4.933505 TCAATTGAACTTTGTGCATGGA 57.066 36.364 5.45 0.00 0.00 3.41
3071 5184 6.831727 TCTTTCAATTGAACTTTGTGCATG 57.168 33.333 20.35 0.00 33.13 4.06
3072 5185 6.018507 GCTTCTTTCAATTGAACTTTGTGCAT 60.019 34.615 20.35 0.00 33.13 3.96
3073 5186 5.291614 GCTTCTTTCAATTGAACTTTGTGCA 59.708 36.000 20.35 2.75 33.13 4.57
3074 5187 5.555069 CGCTTCTTTCAATTGAACTTTGTGC 60.555 40.000 20.35 16.77 33.13 4.57
3075 5188 5.516339 ACGCTTCTTTCAATTGAACTTTGTG 59.484 36.000 20.35 17.59 33.13 3.33
3076 5189 5.516339 CACGCTTCTTTCAATTGAACTTTGT 59.484 36.000 20.35 11.26 33.13 2.83
3077 5190 5.516339 ACACGCTTCTTTCAATTGAACTTTG 59.484 36.000 20.35 11.99 33.13 2.77
3078 5191 5.516339 CACACGCTTCTTTCAATTGAACTTT 59.484 36.000 20.35 0.00 33.13 2.66
3079 5192 5.036737 CACACGCTTCTTTCAATTGAACTT 58.963 37.500 20.35 0.00 33.13 2.66
3080 5193 4.601019 CACACGCTTCTTTCAATTGAACT 58.399 39.130 20.35 0.00 33.13 3.01
3081 5194 3.180387 GCACACGCTTCTTTCAATTGAAC 59.820 43.478 20.35 7.90 32.04 3.18
3082 5195 3.371168 GCACACGCTTCTTTCAATTGAA 58.629 40.909 16.91 16.91 34.30 2.69
3083 5196 2.601979 CGCACACGCTTCTTTCAATTGA 60.602 45.455 3.38 3.38 35.30 2.57
3084 5197 1.710249 CGCACACGCTTCTTTCAATTG 59.290 47.619 0.00 0.00 35.30 2.32
3085 5198 1.601903 TCGCACACGCTTCTTTCAATT 59.398 42.857 0.00 0.00 39.84 2.32
3088 5201 2.073117 TATCGCACACGCTTCTTTCA 57.927 45.000 0.00 0.00 39.84 2.69
3092 5205 1.726791 CAGTTTATCGCACACGCTTCT 59.273 47.619 0.00 0.00 39.84 2.85
3095 5208 1.459592 GTTCAGTTTATCGCACACGCT 59.540 47.619 0.00 0.00 39.84 5.07
3106 5219 6.995686 ACAACCATGTGTGATAGTTCAGTTTA 59.004 34.615 0.18 0.00 38.69 2.01
3107 5220 5.827797 ACAACCATGTGTGATAGTTCAGTTT 59.172 36.000 0.18 0.00 38.69 2.66
3123 5236 5.163519 ACAGAGTTTTCTTTCCACAACCATG 60.164 40.000 0.00 0.00 0.00 3.66
3125 5238 4.157656 CACAGAGTTTTCTTTCCACAACCA 59.842 41.667 0.00 0.00 0.00 3.67
3126 5239 4.672409 CACAGAGTTTTCTTTCCACAACC 58.328 43.478 0.00 0.00 0.00 3.77
3127 5240 4.105486 GCACAGAGTTTTCTTTCCACAAC 58.895 43.478 0.00 0.00 0.00 3.32
3128 5241 3.761218 TGCACAGAGTTTTCTTTCCACAA 59.239 39.130 0.00 0.00 0.00 3.33
3129 5242 3.351740 TGCACAGAGTTTTCTTTCCACA 58.648 40.909 0.00 0.00 0.00 4.17
3130 5243 4.370364 TTGCACAGAGTTTTCTTTCCAC 57.630 40.909 0.00 0.00 0.00 4.02
3131 5244 5.596836 AATTGCACAGAGTTTTCTTTCCA 57.403 34.783 0.00 0.00 0.00 3.53
3132 5245 7.653311 ACATTAATTGCACAGAGTTTTCTTTCC 59.347 33.333 0.00 0.00 0.00 3.13
3133 5246 8.579682 ACATTAATTGCACAGAGTTTTCTTTC 57.420 30.769 0.00 0.00 0.00 2.62
3139 5252 9.231297 ACTGTATACATTAATTGCACAGAGTTT 57.769 29.630 5.91 0.00 36.85 2.66
3140 5253 8.792830 ACTGTATACATTAATTGCACAGAGTT 57.207 30.769 5.91 0.61 36.85 3.01
3141 5254 8.792830 AACTGTATACATTAATTGCACAGAGT 57.207 30.769 5.91 0.00 36.85 3.24
3153 5266 9.647797 CGCCCATCTATAAAACTGTATACATTA 57.352 33.333 5.91 3.03 0.00 1.90
3154 5267 7.119262 GCGCCCATCTATAAAACTGTATACATT 59.881 37.037 5.91 0.00 0.00 2.71
3155 5268 6.594159 GCGCCCATCTATAAAACTGTATACAT 59.406 38.462 5.91 0.00 0.00 2.29
3156 5269 5.929992 GCGCCCATCTATAAAACTGTATACA 59.070 40.000 5.25 5.25 0.00 2.29
3157 5270 5.061808 CGCGCCCATCTATAAAACTGTATAC 59.938 44.000 0.00 0.00 0.00 1.47
3158 5271 5.165676 CGCGCCCATCTATAAAACTGTATA 58.834 41.667 0.00 0.00 0.00 1.47
3159 5272 3.994392 CGCGCCCATCTATAAAACTGTAT 59.006 43.478 0.00 0.00 0.00 2.29
3160 5273 3.181473 ACGCGCCCATCTATAAAACTGTA 60.181 43.478 5.73 0.00 0.00 2.74
3161 5274 2.210116 CGCGCCCATCTATAAAACTGT 58.790 47.619 0.00 0.00 0.00 3.55
3162 5275 2.032894 CACGCGCCCATCTATAAAACTG 60.033 50.000 5.73 0.00 0.00 3.16
3163 5276 2.210116 CACGCGCCCATCTATAAAACT 58.790 47.619 5.73 0.00 0.00 2.66
3164 5277 1.333791 GCACGCGCCCATCTATAAAAC 60.334 52.381 5.73 0.00 0.00 2.43
3165 5278 0.941542 GCACGCGCCCATCTATAAAA 59.058 50.000 5.73 0.00 0.00 1.52
3166 5279 1.218875 CGCACGCGCCCATCTATAAA 61.219 55.000 5.73 0.00 33.11 1.40
3167 5280 1.663388 CGCACGCGCCCATCTATAA 60.663 57.895 5.73 0.00 33.11 0.98
3168 5281 2.049526 CGCACGCGCCCATCTATA 60.050 61.111 5.73 0.00 33.11 1.31
3169 5282 4.969196 CCGCACGCGCCCATCTAT 62.969 66.667 5.73 0.00 38.24 1.98
3177 5290 2.945615 TTTAGTTCACCGCACGCGC 61.946 57.895 5.73 0.00 38.24 6.86
3178 5291 1.154727 GTTTAGTTCACCGCACGCG 60.155 57.895 3.53 3.53 39.44 6.01
3179 5292 1.205820 GGTTTAGTTCACCGCACGC 59.794 57.895 0.00 0.00 0.00 5.34
3180 5293 1.127951 GATGGTTTAGTTCACCGCACG 59.872 52.381 0.00 0.00 37.07 5.34
3181 5294 2.095919 GTGATGGTTTAGTTCACCGCAC 60.096 50.000 0.00 0.00 37.07 5.34
3182 5295 2.147958 GTGATGGTTTAGTTCACCGCA 58.852 47.619 0.00 0.00 37.07 5.69
3183 5296 2.147958 TGTGATGGTTTAGTTCACCGC 58.852 47.619 0.00 0.00 39.17 5.68
3184 5297 7.962964 ATATATGTGATGGTTTAGTTCACCG 57.037 36.000 0.00 0.00 39.17 4.94
3188 5301 9.463443 GCCAAAATATATGTGATGGTTTAGTTC 57.537 33.333 5.90 0.00 0.00 3.01
3189 5302 9.200817 AGCCAAAATATATGTGATGGTTTAGTT 57.799 29.630 5.90 0.00 0.00 2.24
3190 5303 8.766994 AGCCAAAATATATGTGATGGTTTAGT 57.233 30.769 5.90 0.00 0.00 2.24
3194 5307 9.985730 CATTTAGCCAAAATATATGTGATGGTT 57.014 29.630 5.90 3.21 35.54 3.67
3195 5308 9.365906 TCATTTAGCCAAAATATATGTGATGGT 57.634 29.630 5.90 0.00 35.54 3.55
3199 5312 8.349245 CGGTTCATTTAGCCAAAATATATGTGA 58.651 33.333 0.00 0.00 35.54 3.58
3200 5313 8.134895 ACGGTTCATTTAGCCAAAATATATGTG 58.865 33.333 0.00 0.00 35.54 3.21
3201 5314 8.134895 CACGGTTCATTTAGCCAAAATATATGT 58.865 33.333 0.00 0.00 35.54 2.29
3202 5315 8.134895 ACACGGTTCATTTAGCCAAAATATATG 58.865 33.333 0.00 0.00 35.54 1.78
3203 5316 8.134895 CACACGGTTCATTTAGCCAAAATATAT 58.865 33.333 0.00 0.00 35.54 0.86
3204 5317 7.121463 ACACACGGTTCATTTAGCCAAAATATA 59.879 33.333 0.00 0.00 35.54 0.86
3205 5318 6.071616 ACACACGGTTCATTTAGCCAAAATAT 60.072 34.615 0.00 0.00 35.54 1.28
3206 5319 5.241949 ACACACGGTTCATTTAGCCAAAATA 59.758 36.000 0.00 0.00 35.54 1.40
3306 5420 5.163663 ACGGTCTATTGTAAATTGCACATGG 60.164 40.000 0.00 0.00 0.00 3.66
3427 5541 2.154567 TGCTACGGGTAGAGGTCAAT 57.845 50.000 9.94 0.00 35.21 2.57
3579 5693 0.723981 GCTAGCGTTGAAGCAGAAGG 59.276 55.000 0.00 0.00 38.63 3.46
3584 5698 2.993899 GTTCTTAGCTAGCGTTGAAGCA 59.006 45.455 9.55 0.00 41.32 3.91
3590 5704 2.650163 CGCGTTCTTAGCTAGCGTT 58.350 52.632 9.55 0.00 44.96 4.84
3611 5725 2.511373 GACCGCATGGATGTCGCA 60.511 61.111 0.00 0.00 39.21 5.10
3654 5768 1.209621 GAAGCCCCCATGGTGTAGTA 58.790 55.000 11.73 0.00 36.04 1.82
3667 5781 4.525949 GTCGCTACCCCGAAGCCC 62.526 72.222 0.00 0.00 39.17 5.19
3723 5837 1.078347 AATTGTTGGGCCCGACCAT 59.922 52.632 35.21 28.16 40.91 3.55
3746 5861 6.808321 TTAACTGTGTAGAATATGAGGCCT 57.192 37.500 3.86 3.86 0.00 5.19
3756 5871 5.466819 CCTCGTGACATTAACTGTGTAGAA 58.533 41.667 0.00 0.00 38.54 2.10
3762 5877 1.278127 CCCCCTCGTGACATTAACTGT 59.722 52.381 0.00 0.00 42.15 3.55
3763 5878 2.024176 CCCCCTCGTGACATTAACTG 57.976 55.000 0.00 0.00 0.00 3.16
3798 5913 1.751927 CCTGCCTGGATGAGTTGGC 60.752 63.158 0.00 0.00 45.10 4.52
3813 5928 2.281761 GGGCCGGTATGATGCCTG 60.282 66.667 1.90 0.00 44.71 4.85
3871 5986 0.949105 CGGGTTTGAGTTGGAGGTCG 60.949 60.000 0.00 0.00 0.00 4.79
3887 6002 0.179089 CTGAGCCATGACTCTTCGGG 60.179 60.000 10.57 0.00 37.58 5.14
3908 6023 0.625849 CCATTGCCCTAGGGACTGTT 59.374 55.000 33.21 7.67 41.52 3.16
3910 6025 1.533711 CCCATTGCCCTAGGGACTG 59.466 63.158 33.21 22.26 45.80 3.51
3984 6099 3.465403 CGTGCTAGAGCCTGCCCT 61.465 66.667 0.00 0.00 41.18 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.