Multiple sequence alignment - TraesCS6D01G257500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G257500 chr6D 100.000 2782 0 0 1 2782 363321683 363318902 0.000000e+00 5138.0
1 TraesCS6D01G257500 chr6D 81.707 164 22 6 2174 2333 78348737 78348896 2.250000e-26 130.0
2 TraesCS6D01G257500 chr6A 89.812 1276 82 24 590 1844 503835052 503833804 0.000000e+00 1592.0
3 TraesCS6D01G257500 chr6A 84.761 689 71 15 2108 2774 503833676 503833000 0.000000e+00 660.0
4 TraesCS6D01G257500 chr6A 82.222 180 27 3 2158 2333 600949059 600949237 1.730000e-32 150.0
5 TraesCS6D01G257500 chr6A 85.263 95 12 2 6 98 484317624 484317718 2.280000e-16 97.1
6 TraesCS6D01G257500 chr6B 88.582 1305 79 37 556 1838 545279818 545278562 0.000000e+00 1520.0
7 TraesCS6D01G257500 chr6B 83.891 658 72 15 2147 2781 545277586 545276940 5.130000e-167 597.0
8 TraesCS6D01G257500 chr6B 80.942 467 55 23 41 487 545281369 545280917 3.430000e-89 339.0
9 TraesCS6D01G257500 chr7B 84.270 178 22 3 1363 1540 334798533 334798704 4.770000e-38 169.0
10 TraesCS6D01G257500 chr7B 84.348 115 16 2 1 113 661471564 661471678 8.150000e-21 111.0
11 TraesCS6D01G257500 chr7B 85.859 99 12 2 1 97 453120535 453120437 1.360000e-18 104.0
12 TraesCS6D01G257500 chr2D 82.036 167 27 1 2170 2333 35526230 35526064 3.740000e-29 139.0
13 TraesCS6D01G257500 chr5D 80.541 185 30 4 2152 2333 473512145 473512326 1.340000e-28 137.0
14 TraesCS6D01G257500 chr5D 76.442 208 35 3 2129 2333 66611581 66611777 1.760000e-17 100.0
15 TraesCS6D01G257500 chr2B 83.444 151 22 1 2170 2317 58682995 58682845 1.340000e-28 137.0
16 TraesCS6D01G257500 chr2B 78.621 145 22 8 2178 2317 482728349 482728209 1.370000e-13 87.9
17 TraesCS6D01G257500 chr1A 79.330 179 34 2 2158 2333 459332477 459332655 3.760000e-24 122.0
18 TraesCS6D01G257500 chr2A 80.000 170 21 7 2170 2328 450533122 450533289 2.260000e-21 113.0
19 TraesCS6D01G257500 chr2A 85.263 95 10 3 6 96 676338167 676338261 8.200000e-16 95.3
20 TraesCS6D01G257500 chr1D 88.889 90 8 2 6 93 375240746 375240835 2.930000e-20 110.0
21 TraesCS6D01G257500 chr7D 87.368 95 8 3 6 97 519274661 519274568 3.790000e-19 106.0
22 TraesCS6D01G257500 chr3A 86.813 91 10 2 9 97 544428053 544428143 1.760000e-17 100.0
23 TraesCS6D01G257500 chr7A 84.375 96 14 1 3 97 25139739 25139834 2.950000e-15 93.5
24 TraesCS6D01G257500 chr7A 83.000 100 11 5 6 101 507871380 507871283 4.940000e-13 86.1
25 TraesCS6D01G257500 chr5B 81.356 118 18 2 2219 2333 64426319 64426203 2.950000e-15 93.5
26 TraesCS6D01G257500 chr4A 82.979 94 13 1 2158 2251 246649804 246649714 6.390000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G257500 chr6D 363318902 363321683 2781 True 5138.000000 5138 100.000000 1 2782 1 chr6D.!!$R1 2781
1 TraesCS6D01G257500 chr6A 503833000 503835052 2052 True 1126.000000 1592 87.286500 590 2774 2 chr6A.!!$R1 2184
2 TraesCS6D01G257500 chr6B 545276940 545281369 4429 True 818.666667 1520 84.471667 41 2781 3 chr6B.!!$R1 2740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 1579 0.030908 GGAAGCCGAGGTAGATCGTG 59.969 60.0 0.0 0.0 41.12 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2987 0.037447 GGAGAACCAAGGAGCAAGCT 59.963 55.0 0.0 0.0 35.97 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.618045 GCCCCGTATCCTCCCATATTTG 60.618 54.545 0.00 0.00 0.00 2.32
57 58 2.642807 CCCGTATCCTCCCATATTTGGT 59.357 50.000 1.26 0.00 41.91 3.67
66 67 5.251468 TCCTCCCATATTTGGTCTGGATATG 59.749 44.000 1.26 0.00 41.91 1.78
79 80 1.705997 GGATATGAGGGGTGCCGGTT 61.706 60.000 1.90 0.00 0.00 4.44
82 83 1.692173 TATGAGGGGTGCCGGTTAGC 61.692 60.000 1.90 1.96 0.00 3.09
96 97 1.077068 TTAGCCCGGGCATTTGAGG 60.077 57.895 45.13 6.17 44.88 3.86
98 99 0.983905 TAGCCCGGGCATTTGAGGTA 60.984 55.000 45.13 24.42 44.88 3.08
99 100 1.152756 GCCCGGGCATTTGAGGTAT 60.153 57.895 40.73 0.00 41.49 2.73
101 102 1.455383 CCCGGGCATTTGAGGTATGC 61.455 60.000 8.08 0.00 45.92 3.14
107 115 0.937304 CATTTGAGGTATGCGTCCGG 59.063 55.000 0.00 0.00 0.00 5.14
108 116 0.814010 ATTTGAGGTATGCGTCCGGC 60.814 55.000 0.00 0.00 43.96 6.13
110 118 2.279517 GAGGTATGCGTCCGGCTG 60.280 66.667 0.00 0.00 44.05 4.85
112 120 3.845259 GGTATGCGTCCGGCTGGA 61.845 66.667 11.27 11.27 43.88 3.86
123 131 1.559219 TCCGGCTGGATCAGATTTTCA 59.441 47.619 11.27 0.00 40.17 2.69
125 133 2.292569 CCGGCTGGATCAGATTTTCATG 59.707 50.000 5.28 0.00 37.49 3.07
134 142 4.014569 TCAGATTTTCATGACCGGTCAA 57.985 40.909 39.04 23.89 43.58 3.18
135 143 4.588899 TCAGATTTTCATGACCGGTCAAT 58.411 39.130 39.04 27.39 43.58 2.57
139 147 3.417069 TTTCATGACCGGTCAATGTCT 57.583 42.857 39.04 21.24 43.58 3.41
141 149 1.899142 TCATGACCGGTCAATGTCTGA 59.101 47.619 39.04 31.96 43.58 3.27
144 152 2.698803 TGACCGGTCAATGTCTGAATG 58.301 47.619 34.60 0.00 36.53 2.67
145 153 2.301583 TGACCGGTCAATGTCTGAATGA 59.698 45.455 34.60 6.57 36.53 2.57
146 154 2.932614 GACCGGTCAATGTCTGAATGAG 59.067 50.000 29.75 0.00 35.22 2.90
149 157 2.019984 GGTCAATGTCTGAATGAGCCC 58.980 52.381 7.09 0.00 35.22 5.19
150 158 1.667724 GTCAATGTCTGAATGAGCCCG 59.332 52.381 0.00 0.00 35.22 6.13
153 161 0.463295 ATGTCTGAATGAGCCCGCTG 60.463 55.000 0.00 0.00 0.00 5.18
154 162 1.078848 GTCTGAATGAGCCCGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
155 163 1.086634 GTCTGAATGAGCCCGCTGTC 61.087 60.000 0.00 0.00 0.00 3.51
156 164 1.817099 CTGAATGAGCCCGCTGTCC 60.817 63.158 0.00 0.00 0.00 4.02
178 186 3.047877 GAGCCGTCGGGGTGTTTG 61.048 66.667 14.38 0.00 46.15 2.93
181 189 2.358247 CCGTCGGGGTGTTTGAGG 60.358 66.667 2.34 0.00 0.00 3.86
182 190 3.047877 CGTCGGGGTGTTTGAGGC 61.048 66.667 0.00 0.00 0.00 4.70
190 198 1.104577 GGTGTTTGAGGCCGGTTTGA 61.105 55.000 1.90 0.00 0.00 2.69
211 219 3.917760 GCGGGGCGTAGATGCTCT 61.918 66.667 0.00 0.00 35.04 4.09
212 220 2.336809 CGGGGCGTAGATGCTCTC 59.663 66.667 0.00 0.00 35.04 3.20
220 229 3.448686 GCGTAGATGCTCTCAGCTTTAA 58.551 45.455 0.00 0.00 42.97 1.52
222 231 4.677584 CGTAGATGCTCTCAGCTTTAACT 58.322 43.478 0.00 0.00 42.97 2.24
253 262 0.652071 GAACGATGCGCATGTGATCA 59.348 50.000 30.76 0.00 0.00 2.92
254 263 1.262417 GAACGATGCGCATGTGATCAT 59.738 47.619 30.76 10.36 34.21 2.45
255 264 0.863799 ACGATGCGCATGTGATCATC 59.136 50.000 30.76 10.74 33.79 2.92
258 267 1.730612 GATGCGCATGTGATCATCGAT 59.269 47.619 30.76 0.00 31.15 3.59
260 269 0.863799 GCGCATGTGATCATCGATGT 59.136 50.000 24.09 12.20 31.15 3.06
261 270 1.398071 GCGCATGTGATCATCGATGTG 60.398 52.381 24.09 14.96 31.15 3.21
262 271 1.193874 CGCATGTGATCATCGATGTGG 59.806 52.381 24.09 8.77 31.15 4.17
263 272 1.069432 GCATGTGATCATCGATGTGGC 60.069 52.381 24.09 14.79 31.15 5.01
264 273 2.215196 CATGTGATCATCGATGTGGCA 58.785 47.619 24.09 16.96 31.15 4.92
265 274 2.625695 TGTGATCATCGATGTGGCAT 57.374 45.000 24.09 10.94 0.00 4.40
266 275 2.486918 TGTGATCATCGATGTGGCATC 58.513 47.619 24.09 18.79 0.00 3.91
267 276 1.458445 GTGATCATCGATGTGGCATCG 59.542 52.381 24.09 21.17 42.38 3.84
269 278 0.321034 ATCATCGATGTGGCATCGGG 60.321 55.000 24.09 18.83 41.45 5.14
271 280 0.815213 CATCGATGTGGCATCGGGTT 60.815 55.000 24.90 12.02 41.45 4.11
272 281 0.815213 ATCGATGTGGCATCGGGTTG 60.815 55.000 24.90 3.85 41.45 3.77
275 284 1.656818 GATGTGGCATCGGGTTGGTG 61.657 60.000 0.00 0.00 0.00 4.17
303 312 1.945394 AGTGGTAGTATACACTCCGCG 59.055 52.381 5.50 0.00 45.43 6.46
304 313 1.002033 GTGGTAGTATACACTCCGCGG 60.002 57.143 22.12 22.12 45.43 6.46
311 320 0.963856 ATACACTCCGCGGACTGTCA 60.964 55.000 34.17 23.24 0.00 3.58
326 335 6.033341 CGGACTGTCATTTTTGTTCAGAAAA 58.967 36.000 10.38 0.00 0.00 2.29
327 336 6.529829 CGGACTGTCATTTTTGTTCAGAAAAA 59.470 34.615 10.38 0.00 38.75 1.94
396 405 5.830991 ACTCCACATAGAGTTGACTATCTCC 59.169 44.000 0.00 0.00 44.83 3.71
401 410 7.364232 CCACATAGAGTTGACTATCTCCTTTGT 60.364 40.741 0.00 0.00 31.68 2.83
403 412 7.179338 ACATAGAGTTGACTATCTCCTTTGTGT 59.821 37.037 0.00 0.00 31.68 3.72
429 438 6.969366 TGGCATATTATTATTCACTGCACAC 58.031 36.000 0.00 0.00 0.00 3.82
436 445 4.983215 TTATTCACTGCACACTTACACG 57.017 40.909 0.00 0.00 0.00 4.49
437 446 0.934496 TTCACTGCACACTTACACGC 59.066 50.000 0.00 0.00 0.00 5.34
438 447 0.104120 TCACTGCACACTTACACGCT 59.896 50.000 0.00 0.00 0.00 5.07
439 448 0.937304 CACTGCACACTTACACGCTT 59.063 50.000 0.00 0.00 0.00 4.68
440 449 0.937304 ACTGCACACTTACACGCTTG 59.063 50.000 0.00 0.00 0.00 4.01
441 450 0.384725 CTGCACACTTACACGCTTGC 60.385 55.000 0.00 0.00 0.00 4.01
442 451 1.092345 TGCACACTTACACGCTTGCA 61.092 50.000 0.00 0.00 37.63 4.08
453 470 0.813184 ACGCTTGCAAATGGGAGATG 59.187 50.000 9.35 0.00 0.00 2.90
487 504 6.953743 CGCAATACAGTACACTTGAACATAAC 59.046 38.462 0.00 0.00 0.00 1.89
488 505 7.241376 GCAATACAGTACACTTGAACATAACC 58.759 38.462 0.00 0.00 0.00 2.85
491 508 6.169557 ACAGTACACTTGAACATAACCTCA 57.830 37.500 0.00 0.00 0.00 3.86
492 509 5.989777 ACAGTACACTTGAACATAACCTCAC 59.010 40.000 0.00 0.00 0.00 3.51
493 510 5.408604 CAGTACACTTGAACATAACCTCACC 59.591 44.000 0.00 0.00 0.00 4.02
494 511 3.751518 ACACTTGAACATAACCTCACCC 58.248 45.455 0.00 0.00 0.00 4.61
496 513 4.141251 ACACTTGAACATAACCTCACCCTT 60.141 41.667 0.00 0.00 0.00 3.95
497 514 5.072600 ACACTTGAACATAACCTCACCCTTA 59.927 40.000 0.00 0.00 0.00 2.69
498 515 6.001460 CACTTGAACATAACCTCACCCTTAA 58.999 40.000 0.00 0.00 0.00 1.85
499 516 6.149474 CACTTGAACATAACCTCACCCTTAAG 59.851 42.308 0.00 0.00 0.00 1.85
500 517 6.043938 ACTTGAACATAACCTCACCCTTAAGA 59.956 38.462 3.36 0.00 0.00 2.10
502 519 6.414732 TGAACATAACCTCACCCTTAAGATG 58.585 40.000 3.36 2.15 0.00 2.90
504 521 6.388619 ACATAACCTCACCCTTAAGATGTT 57.611 37.500 3.36 0.00 0.00 2.71
505 522 6.790319 ACATAACCTCACCCTTAAGATGTTT 58.210 36.000 3.36 1.43 0.00 2.83
506 523 7.238710 ACATAACCTCACCCTTAAGATGTTTT 58.761 34.615 3.36 1.13 0.00 2.43
507 524 7.176690 ACATAACCTCACCCTTAAGATGTTTTG 59.823 37.037 3.36 2.61 32.27 2.44
508 525 5.061721 ACCTCACCCTTAAGATGTTTTGT 57.938 39.130 3.36 0.00 0.00 2.83
510 527 5.070001 CCTCACCCTTAAGATGTTTTGTCA 58.930 41.667 3.36 0.00 0.00 3.58
515 1546 4.761739 CCCTTAAGATGTTTTGTCAGCTCA 59.238 41.667 3.36 0.00 32.72 4.26
520 1551 9.713740 CTTAAGATGTTTTGTCAGCTCAATATC 57.286 33.333 0.00 0.00 32.72 1.63
525 1556 2.967599 TGTCAGCTCAATATCTGCGT 57.032 45.000 0.00 0.00 0.00 5.24
529 1560 3.733224 GTCAGCTCAATATCTGCGTACAG 59.267 47.826 0.00 0.00 45.95 2.74
542 1573 0.381089 CGTACAGGAAGCCGAGGTAG 59.619 60.000 0.00 0.00 0.00 3.18
544 1575 2.308690 GTACAGGAAGCCGAGGTAGAT 58.691 52.381 0.00 0.00 0.00 1.98
545 1576 1.404843 ACAGGAAGCCGAGGTAGATC 58.595 55.000 0.00 0.00 0.00 2.75
546 1577 0.312416 CAGGAAGCCGAGGTAGATCG 59.688 60.000 0.00 0.00 42.36 3.69
547 1578 0.106619 AGGAAGCCGAGGTAGATCGT 60.107 55.000 0.00 0.00 41.12 3.73
548 1579 0.030908 GGAAGCCGAGGTAGATCGTG 59.969 60.000 0.00 0.00 41.12 4.35
553 1600 1.403780 GCCGAGGTAGATCGTGTTTGT 60.404 52.381 0.00 0.00 41.12 2.83
554 1601 2.259618 CCGAGGTAGATCGTGTTTGTG 58.740 52.381 0.00 0.00 41.12 3.33
559 1606 5.312120 AGGTAGATCGTGTTTGTGTCTAG 57.688 43.478 0.00 0.00 0.00 2.43
568 1615 2.288825 TGTTTGTGTCTAGCTCCTTCCG 60.289 50.000 0.00 0.00 0.00 4.30
571 1618 1.271982 TGTGTCTAGCTCCTTCCGTCT 60.272 52.381 0.00 0.00 0.00 4.18
573 1620 2.231721 GTGTCTAGCTCCTTCCGTCTTT 59.768 50.000 0.00 0.00 0.00 2.52
580 1627 2.876079 GCTCCTTCCGTCTTTGGAACAT 60.876 50.000 0.00 0.00 43.01 2.71
581 1628 3.618997 GCTCCTTCCGTCTTTGGAACATA 60.619 47.826 0.00 0.00 43.01 2.29
582 1629 4.184629 CTCCTTCCGTCTTTGGAACATAG 58.815 47.826 0.00 0.00 43.01 2.23
641 1688 2.938838 ACCGTCAAATTCCAAACCAGA 58.061 42.857 0.00 0.00 0.00 3.86
655 1702 1.039856 ACCAGAAAAGCCACGCAATT 58.960 45.000 0.00 0.00 0.00 2.32
656 1703 2.235016 ACCAGAAAAGCCACGCAATTA 58.765 42.857 0.00 0.00 0.00 1.40
704 1751 3.380637 CCAACAGCACTATAGTACGACCT 59.619 47.826 4.74 0.00 0.00 3.85
725 1772 4.175337 CGACCGGCCACCCATGAT 62.175 66.667 0.00 0.00 0.00 2.45
726 1773 2.802724 CGACCGGCCACCCATGATA 61.803 63.158 0.00 0.00 0.00 2.15
768 1819 1.827399 AAAGCCCCATCGTCGTCACT 61.827 55.000 0.00 0.00 0.00 3.41
786 1837 1.280710 ACTCCATCAATACGCCCACAA 59.719 47.619 0.00 0.00 0.00 3.33
845 1901 4.233123 TGCGACCGACGATCTTAATTAT 57.767 40.909 0.00 0.00 45.77 1.28
846 1902 3.978855 TGCGACCGACGATCTTAATTATG 59.021 43.478 0.00 0.00 45.77 1.90
847 1903 3.364023 GCGACCGACGATCTTAATTATGG 59.636 47.826 0.00 0.00 45.77 2.74
848 1904 4.790878 CGACCGACGATCTTAATTATGGA 58.209 43.478 0.00 0.00 45.77 3.41
850 1906 5.116680 CGACCGACGATCTTAATTATGGAAC 59.883 44.000 0.00 0.00 45.77 3.62
851 1907 7.221441 CGACCGACGATCTTAATTATGGAACA 61.221 42.308 0.00 0.00 45.05 3.18
852 1908 8.623322 CGACCGACGATCTTAATTATGGAACAA 61.623 40.741 0.00 0.00 44.30 2.83
887 1943 4.485024 TCGAGCGACCTAATCTAATCAC 57.515 45.455 0.00 0.00 0.00 3.06
969 2028 0.171007 TTAACTAGCCGAACCGTCCG 59.829 55.000 0.00 0.00 0.00 4.79
1065 2142 0.962855 GGAGAGGAGCCAAAGCCAAC 60.963 60.000 0.00 0.00 41.25 3.77
1066 2143 1.301677 GAGAGGAGCCAAAGCCAACG 61.302 60.000 0.00 0.00 41.25 4.10
1067 2144 2.282462 AGGAGCCAAAGCCAACGG 60.282 61.111 0.00 0.00 41.25 4.44
1068 2145 3.373565 GGAGCCAAAGCCAACGGG 61.374 66.667 0.00 0.00 41.25 5.28
1069 2146 3.373565 GAGCCAAAGCCAACGGGG 61.374 66.667 0.00 0.00 41.25 5.73
1070 2147 4.994756 AGCCAAAGCCAACGGGGG 62.995 66.667 0.00 0.00 41.25 5.40
1071 2148 4.986708 GCCAAAGCCAACGGGGGA 62.987 66.667 0.00 0.00 37.04 4.81
1072 2149 2.037208 CCAAAGCCAACGGGGGAT 59.963 61.111 0.00 0.00 37.04 3.85
1073 2150 2.052104 CCAAAGCCAACGGGGGATC 61.052 63.158 0.00 0.00 37.04 3.36
1074 2151 2.045340 AAAGCCAACGGGGGATCG 60.045 61.111 0.00 0.00 37.04 3.69
1075 2152 2.598787 AAAGCCAACGGGGGATCGA 61.599 57.895 0.00 0.00 37.04 3.59
1076 2153 2.132089 AAAGCCAACGGGGGATCGAA 62.132 55.000 0.00 0.00 37.04 3.71
1077 2154 2.513897 GCCAACGGGGGATCGAAG 60.514 66.667 0.00 0.00 37.04 3.79
1098 2181 3.213402 GTCGGCGAGGAGGAGGAG 61.213 72.222 11.20 0.00 0.00 3.69
1099 2182 4.507916 TCGGCGAGGAGGAGGAGG 62.508 72.222 4.99 0.00 0.00 4.30
1100 2183 4.507916 CGGCGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
1318 2401 3.367743 CGTCGTCGTCCAAGGGGA 61.368 66.667 0.00 0.00 42.29 4.81
1325 2408 4.058434 GTCCAAGGGGAGGAGGAG 57.942 66.667 0.00 0.00 46.12 3.69
1327 2410 3.093172 CCAAGGGGAGGAGGAGGC 61.093 72.222 0.00 0.00 35.59 4.70
1329 2412 4.439901 AAGGGGAGGAGGAGGCCC 62.440 72.222 0.00 0.00 41.28 5.80
1600 2683 3.128259 CAGCTCGCTCTGCAACTTA 57.872 52.632 0.00 0.00 0.00 2.24
1613 2696 3.282021 TGCAACTTAGCCAAGATCCATC 58.718 45.455 0.00 0.00 35.60 3.51
1622 2708 1.424302 CCAAGATCCATCCATGCCTCT 59.576 52.381 0.00 0.00 0.00 3.69
1640 2726 2.423185 CTCTCTCTGCCTCACTACTGTG 59.577 54.545 0.00 0.00 45.07 3.66
1676 2762 0.667993 TGCCGCTCTGTTTTTCCTTG 59.332 50.000 0.00 0.00 0.00 3.61
1765 2851 7.319615 CGACACCGTGTAAAAGAAGTTTTAATC 59.680 37.037 3.58 0.00 39.34 1.75
1777 2863 6.862209 AGAAGTTTTAATCAACAGTGTTGCA 58.138 32.000 27.74 17.95 0.00 4.08
1788 2874 4.989279 ACAGTGTTGCAAAATCTCAGTT 57.011 36.364 0.00 0.00 0.00 3.16
1795 2881 5.749588 TGTTGCAAAATCTCAGTTGATGTTG 59.250 36.000 0.00 0.00 41.94 3.33
1838 2924 6.412362 AGAGACCGTGCTAAATCTCAATAT 57.588 37.500 10.05 0.00 40.10 1.28
1839 2925 7.526142 AGAGACCGTGCTAAATCTCAATATA 57.474 36.000 10.05 0.00 40.10 0.86
1840 2926 8.128322 AGAGACCGTGCTAAATCTCAATATAT 57.872 34.615 10.05 0.00 40.10 0.86
1841 2927 9.244292 AGAGACCGTGCTAAATCTCAATATATA 57.756 33.333 10.05 0.00 40.10 0.86
1866 2952 8.627208 ATTATGTCAGTTGATTGAGACTTTGT 57.373 30.769 0.00 0.00 32.41 2.83
1867 2953 5.991328 TGTCAGTTGATTGAGACTTTGTC 57.009 39.130 0.00 0.00 32.41 3.18
1868 2954 4.507756 TGTCAGTTGATTGAGACTTTGTCG 59.492 41.667 0.00 0.00 37.67 4.35
1869 2955 4.745125 GTCAGTTGATTGAGACTTTGTCGA 59.255 41.667 0.00 0.00 37.67 4.20
1870 2956 4.984785 TCAGTTGATTGAGACTTTGTCGAG 59.015 41.667 0.00 0.00 37.67 4.04
1871 2957 4.747108 CAGTTGATTGAGACTTTGTCGAGT 59.253 41.667 0.00 0.00 37.67 4.18
1872 2958 4.747108 AGTTGATTGAGACTTTGTCGAGTG 59.253 41.667 0.00 0.00 37.67 3.51
1873 2959 4.584327 TGATTGAGACTTTGTCGAGTGA 57.416 40.909 0.00 0.00 37.67 3.41
1874 2960 4.550422 TGATTGAGACTTTGTCGAGTGAG 58.450 43.478 0.00 0.00 37.67 3.51
1875 2961 4.278419 TGATTGAGACTTTGTCGAGTGAGA 59.722 41.667 0.00 0.00 37.67 3.27
1876 2962 4.855715 TTGAGACTTTGTCGAGTGAGAT 57.144 40.909 0.00 0.00 37.67 2.75
1877 2963 4.427096 TGAGACTTTGTCGAGTGAGATC 57.573 45.455 0.00 0.00 37.67 2.75
1878 2964 3.191581 TGAGACTTTGTCGAGTGAGATCC 59.808 47.826 0.00 0.00 37.67 3.36
1879 2965 3.157881 AGACTTTGTCGAGTGAGATCCA 58.842 45.455 0.00 0.00 37.67 3.41
1880 2966 3.192422 AGACTTTGTCGAGTGAGATCCAG 59.808 47.826 0.00 0.00 37.67 3.86
1881 2967 2.266554 CTTTGTCGAGTGAGATCCAGC 58.733 52.381 0.00 0.00 0.00 4.85
1882 2968 0.532573 TTGTCGAGTGAGATCCAGCC 59.467 55.000 0.00 0.00 0.00 4.85
1883 2969 0.611896 TGTCGAGTGAGATCCAGCCA 60.612 55.000 0.00 0.00 0.00 4.75
1884 2970 0.179124 GTCGAGTGAGATCCAGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
1885 2971 0.611896 TCGAGTGAGATCCAGCCACA 60.612 55.000 0.00 0.00 33.53 4.17
1886 2972 0.459237 CGAGTGAGATCCAGCCACAC 60.459 60.000 0.00 0.00 33.53 3.82
1887 2973 0.107945 GAGTGAGATCCAGCCACACC 60.108 60.000 0.00 0.00 33.53 4.16
1888 2974 0.546267 AGTGAGATCCAGCCACACCT 60.546 55.000 0.00 0.00 33.53 4.00
1889 2975 0.326264 GTGAGATCCAGCCACACCTT 59.674 55.000 0.00 0.00 0.00 3.50
1890 2976 1.067295 TGAGATCCAGCCACACCTTT 58.933 50.000 0.00 0.00 0.00 3.11
1891 2977 2.027192 GTGAGATCCAGCCACACCTTTA 60.027 50.000 0.00 0.00 0.00 1.85
1892 2978 2.642311 TGAGATCCAGCCACACCTTTAA 59.358 45.455 0.00 0.00 0.00 1.52
1893 2979 3.266772 TGAGATCCAGCCACACCTTTAAT 59.733 43.478 0.00 0.00 0.00 1.40
1894 2980 3.624777 AGATCCAGCCACACCTTTAATG 58.375 45.455 0.00 0.00 0.00 1.90
1895 2981 1.544724 TCCAGCCACACCTTTAATGC 58.455 50.000 0.00 0.00 0.00 3.56
1896 2982 1.202989 TCCAGCCACACCTTTAATGCA 60.203 47.619 0.00 0.00 0.00 3.96
1897 2983 1.203052 CCAGCCACACCTTTAATGCAG 59.797 52.381 0.00 0.00 0.00 4.41
1898 2984 0.890683 AGCCACACCTTTAATGCAGC 59.109 50.000 0.00 0.00 0.00 5.25
1899 2985 0.890683 GCCACACCTTTAATGCAGCT 59.109 50.000 0.00 0.00 0.00 4.24
1900 2986 1.273327 GCCACACCTTTAATGCAGCTT 59.727 47.619 0.00 0.00 0.00 3.74
1901 2987 2.491693 GCCACACCTTTAATGCAGCTTA 59.508 45.455 0.00 0.00 0.00 3.09
1902 2988 3.428045 GCCACACCTTTAATGCAGCTTAG 60.428 47.826 0.00 0.00 0.00 2.18
1903 2989 3.428045 CCACACCTTTAATGCAGCTTAGC 60.428 47.826 0.00 0.00 0.00 3.09
1904 2990 3.441572 CACACCTTTAATGCAGCTTAGCT 59.558 43.478 0.00 0.00 40.77 3.32
1905 2991 4.082125 ACACCTTTAATGCAGCTTAGCTT 58.918 39.130 3.00 0.00 36.40 3.74
1906 2992 4.082571 ACACCTTTAATGCAGCTTAGCTTG 60.083 41.667 3.00 1.45 36.40 4.01
1907 2993 3.119352 ACCTTTAATGCAGCTTAGCTTGC 60.119 43.478 17.32 17.32 36.40 4.01
1908 2994 3.129988 CCTTTAATGCAGCTTAGCTTGCT 59.870 43.478 21.97 8.65 36.40 3.91
1909 2995 4.349501 CTTTAATGCAGCTTAGCTTGCTC 58.650 43.478 21.97 7.57 36.40 4.26
1910 2996 1.101331 AATGCAGCTTAGCTTGCTCC 58.899 50.000 21.97 3.51 36.40 4.70
1911 2997 0.255318 ATGCAGCTTAGCTTGCTCCT 59.745 50.000 21.97 9.89 36.40 3.69
1912 2998 0.037303 TGCAGCTTAGCTTGCTCCTT 59.963 50.000 21.97 0.00 36.40 3.36
1913 2999 0.450983 GCAGCTTAGCTTGCTCCTTG 59.549 55.000 3.00 0.00 36.40 3.61
1914 3000 1.093159 CAGCTTAGCTTGCTCCTTGG 58.907 55.000 3.00 0.00 36.40 3.61
1915 3001 0.695347 AGCTTAGCTTGCTCCTTGGT 59.305 50.000 0.00 0.00 33.89 3.67
1916 3002 1.074566 AGCTTAGCTTGCTCCTTGGTT 59.925 47.619 0.00 0.00 33.89 3.67
1917 3003 1.470494 GCTTAGCTTGCTCCTTGGTTC 59.530 52.381 0.00 0.00 0.00 3.62
1918 3004 2.877708 GCTTAGCTTGCTCCTTGGTTCT 60.878 50.000 0.00 0.00 0.00 3.01
1919 3005 2.770164 TAGCTTGCTCCTTGGTTCTC 57.230 50.000 0.00 0.00 0.00 2.87
1920 3006 0.037447 AGCTTGCTCCTTGGTTCTCC 59.963 55.000 0.00 0.00 0.00 3.71
1921 3007 0.250901 GCTTGCTCCTTGGTTCTCCA 60.251 55.000 0.00 0.00 42.66 3.86
1933 3019 3.516615 TGGTTCTCCAAAAGTTTTTGCG 58.483 40.909 10.98 5.88 44.62 4.85
1934 3020 2.284150 GGTTCTCCAAAAGTTTTTGCGC 59.716 45.455 0.00 0.00 44.62 6.09
1935 3021 3.186909 GTTCTCCAAAAGTTTTTGCGCT 58.813 40.909 9.73 0.00 44.62 5.92
1936 3022 2.808244 TCTCCAAAAGTTTTTGCGCTG 58.192 42.857 9.73 0.00 44.62 5.18
1937 3023 2.425312 TCTCCAAAAGTTTTTGCGCTGA 59.575 40.909 9.73 0.00 44.62 4.26
1938 3024 3.068024 TCTCCAAAAGTTTTTGCGCTGAT 59.932 39.130 9.73 0.00 44.62 2.90
1939 3025 3.380142 TCCAAAAGTTTTTGCGCTGATC 58.620 40.909 9.73 0.00 44.62 2.92
1940 3026 3.068024 TCCAAAAGTTTTTGCGCTGATCT 59.932 39.130 9.73 0.00 44.62 2.75
1941 3027 3.803778 CCAAAAGTTTTTGCGCTGATCTT 59.196 39.130 9.73 4.34 44.62 2.40
1942 3028 4.084900 CCAAAAGTTTTTGCGCTGATCTTC 60.085 41.667 9.73 0.00 44.62 2.87
1943 3029 4.574599 AAAGTTTTTGCGCTGATCTTCT 57.425 36.364 9.73 0.00 0.00 2.85
1944 3030 3.549299 AGTTTTTGCGCTGATCTTCTG 57.451 42.857 9.73 0.00 0.00 3.02
1945 3031 1.981533 GTTTTTGCGCTGATCTTCTGC 59.018 47.619 9.73 0.00 37.88 4.26
1946 3032 1.237533 TTTTGCGCTGATCTTCTGCA 58.762 45.000 9.73 0.00 40.74 4.41
1947 3033 0.800631 TTTGCGCTGATCTTCTGCAG 59.199 50.000 7.63 7.63 40.74 4.41
1948 3034 0.321034 TTGCGCTGATCTTCTGCAGT 60.321 50.000 14.67 0.00 40.74 4.40
1968 3054 4.974275 CAGTTTTGCTTTCATCACTGTGAG 59.026 41.667 16.46 8.49 32.26 3.51
1972 3058 4.335400 TGCTTTCATCACTGTGAGTGTA 57.665 40.909 16.46 6.15 46.03 2.90
1979 3781 7.984422 TTCATCACTGTGAGTGTATTTTCAT 57.016 32.000 16.46 0.00 46.03 2.57
1998 3800 9.865321 ATTTTCATTCAGAAATACATGACCTTG 57.135 29.630 0.00 0.00 45.15 3.61
1999 3801 8.408043 TTTCATTCAGAAATACATGACCTTGT 57.592 30.769 0.00 0.00 41.17 3.16
2000 3802 8.408043 TTCATTCAGAAATACATGACCTTGTT 57.592 30.769 0.00 0.00 32.05 2.83
2011 3813 5.288804 ACATGACCTTGTTGCAAATTGTAC 58.711 37.500 0.00 0.00 0.00 2.90
2026 3828 8.580720 TGCAAATTGTACCTCTAAAAATGCTAA 58.419 29.630 0.00 0.00 0.00 3.09
2061 3863 3.054655 TGTTCTTCTACCCACTAATGCCC 60.055 47.826 0.00 0.00 0.00 5.36
2077 3879 0.255033 GCCCCCGGAAACTTGTAGAT 59.745 55.000 0.73 0.00 0.00 1.98
2083 3885 2.066262 CGGAAACTTGTAGATGCACGT 58.934 47.619 0.00 0.00 0.00 4.49
2089 3891 4.983671 ACTTGTAGATGCACGTAGATGA 57.016 40.909 0.00 0.00 0.00 2.92
2100 3902 0.248661 CGTAGATGAGAGGGCACACG 60.249 60.000 0.00 0.00 0.00 4.49
2101 3903 0.528684 GTAGATGAGAGGGCACACGC 60.529 60.000 0.00 0.00 37.44 5.34
2136 4001 8.126871 GTTTTAGGTTTCAAAACTTGTCATCC 57.873 34.615 0.00 0.00 40.88 3.51
2137 4002 4.568152 AGGTTTCAAAACTTGTCATCCG 57.432 40.909 5.66 0.00 38.89 4.18
2138 4003 3.049912 GGTTTCAAAACTTGTCATCCGC 58.950 45.455 5.66 0.00 38.89 5.54
2141 4006 1.879380 TCAAAACTTGTCATCCGCTGG 59.121 47.619 0.00 0.00 0.00 4.85
2144 4009 2.094762 AACTTGTCATCCGCTGGTAC 57.905 50.000 0.00 0.00 0.00 3.34
2145 4010 0.249398 ACTTGTCATCCGCTGGTACC 59.751 55.000 4.43 4.43 0.00 3.34
2154 4019 3.706600 TCCGCTGGTACCAAGTTTTAT 57.293 42.857 17.11 0.00 0.00 1.40
2160 4025 5.980715 CGCTGGTACCAAGTTTTATGTTTTT 59.019 36.000 17.11 0.00 0.00 1.94
2172 4037 5.858159 TTTATGTTTTTGTCGTTTGCTCG 57.142 34.783 0.00 0.00 0.00 5.03
2217 4082 9.601397 GAAACTTAACGAAAATTTGAAAACTCG 57.399 29.630 6.23 6.23 0.00 4.18
2219 4084 8.099746 ACTTAACGAAAATTTGAAAACTCGTG 57.900 30.769 12.59 5.12 32.78 4.35
2238 4103 8.980143 ACTCGTGAAAACATATTTAAAATGGG 57.020 30.769 12.13 0.00 0.00 4.00
2241 4106 8.577296 TCGTGAAAACATATTTAAAATGGGTCA 58.423 29.630 12.13 9.72 0.00 4.02
2260 4125 4.698304 GGTCATATTTGAAAACCCTCGTCA 59.302 41.667 0.00 0.00 32.48 4.35
2268 4133 2.702592 AAACCCTCGTCAGAAACACA 57.297 45.000 0.00 0.00 0.00 3.72
2293 4158 9.527566 CAAATATGCAAACGAAACTTAATTTGG 57.472 29.630 0.00 0.00 33.55 3.28
2295 4160 6.763303 ATGCAAACGAAACTTAATTTGGAC 57.237 33.333 0.00 0.00 35.59 4.02
2344 4219 7.828717 GGTTGAAAATCAAAATAATGGGGATGT 59.171 33.333 0.00 0.00 38.22 3.06
2347 4222 7.823310 TGAAAATCAAAATAATGGGGATGTGTG 59.177 33.333 0.00 0.00 0.00 3.82
2353 4234 3.643595 ATGGGGATGTGTGCCACCG 62.644 63.158 0.00 0.00 37.63 4.94
2367 4248 4.365111 ACCGCCCATGTGTGCCAT 62.365 61.111 0.00 0.00 0.00 4.40
2371 4252 0.529833 CGCCCATGTGTGCCATAAAA 59.470 50.000 0.00 0.00 30.71 1.52
2372 4253 1.136695 CGCCCATGTGTGCCATAAAAT 59.863 47.619 0.00 0.00 30.71 1.82
2375 4256 2.765135 CCCATGTGTGCCATAAAATCCA 59.235 45.455 0.00 0.00 30.71 3.41
2376 4257 3.430651 CCCATGTGTGCCATAAAATCCAC 60.431 47.826 0.00 0.00 30.71 4.02
2377 4258 3.195182 CCATGTGTGCCATAAAATCCACA 59.805 43.478 0.00 0.00 37.25 4.17
2378 4259 4.141892 CCATGTGTGCCATAAAATCCACAT 60.142 41.667 0.00 0.00 42.49 3.21
2379 4260 5.068855 CCATGTGTGCCATAAAATCCACATA 59.931 40.000 0.00 0.00 40.48 2.29
2380 4261 6.239373 CCATGTGTGCCATAAAATCCACATAT 60.239 38.462 0.00 0.00 40.48 1.78
2382 4263 7.888250 TGTGTGCCATAAAATCCACATATTA 57.112 32.000 0.00 0.00 39.97 0.98
2384 4265 7.340487 TGTGTGCCATAAAATCCACATATTACA 59.660 33.333 0.00 0.00 39.97 2.41
2387 4268 6.266558 TGCCATAAAATCCACATATTACACCC 59.733 38.462 0.00 0.00 0.00 4.61
2388 4269 6.295067 GCCATAAAATCCACATATTACACCCC 60.295 42.308 0.00 0.00 0.00 4.95
2389 4270 7.010160 CCATAAAATCCACATATTACACCCCT 58.990 38.462 0.00 0.00 0.00 4.79
2390 4271 7.039784 CCATAAAATCCACATATTACACCCCTG 60.040 40.741 0.00 0.00 0.00 4.45
2392 4273 5.725551 AATCCACATATTACACCCCTGAA 57.274 39.130 0.00 0.00 0.00 3.02
2403 4284 2.986728 ACACCCCTGAATTCACTACCTT 59.013 45.455 3.38 0.00 0.00 3.50
2407 4288 5.036916 ACCCCTGAATTCACTACCTTGATA 58.963 41.667 3.38 0.00 0.00 2.15
2437 4318 1.129326 GACTTTCACGTCACCTCACG 58.871 55.000 0.00 0.00 45.65 4.35
2448 4329 1.967779 TCACCTCACGAGTTTCATCCA 59.032 47.619 0.00 0.00 0.00 3.41
2481 4363 9.730420 AAAGTACTTGTTAGCTGTTGTATTTTG 57.270 29.630 9.34 0.00 0.00 2.44
2482 4364 8.671384 AGTACTTGTTAGCTGTTGTATTTTGA 57.329 30.769 0.00 0.00 0.00 2.69
2483 4365 8.557029 AGTACTTGTTAGCTGTTGTATTTTGAC 58.443 33.333 0.00 0.00 0.00 3.18
2484 4366 7.568199 ACTTGTTAGCTGTTGTATTTTGACT 57.432 32.000 0.00 0.00 0.00 3.41
2496 4382 9.787435 TGTTGTATTTTGACTTAAGGTATCAGT 57.213 29.630 7.53 0.00 0.00 3.41
2509 4395 5.678955 AGGTATCAGTGTTTACCCTCTTC 57.321 43.478 16.49 0.00 38.95 2.87
2510 4396 5.091552 AGGTATCAGTGTTTACCCTCTTCA 58.908 41.667 16.49 0.00 38.95 3.02
2512 4398 4.974645 ATCAGTGTTTACCCTCTTCACA 57.025 40.909 0.00 0.00 0.00 3.58
2521 4407 0.250295 CCCTCTTCACAAAGCACGGA 60.250 55.000 0.00 0.00 32.18 4.69
2522 4408 0.868406 CCTCTTCACAAAGCACGGAC 59.132 55.000 0.00 0.00 32.18 4.79
2526 4412 2.146342 CTTCACAAAGCACGGACAGAT 58.854 47.619 0.00 0.00 0.00 2.90
2527 4413 1.511850 TCACAAAGCACGGACAGATG 58.488 50.000 0.00 0.00 0.00 2.90
2528 4414 1.202639 TCACAAAGCACGGACAGATGT 60.203 47.619 0.00 0.00 0.00 3.06
2529 4415 1.069703 CACAAAGCACGGACAGATGTG 60.070 52.381 0.00 0.00 39.10 3.21
2586 4472 4.292186 TGAAAGAATCTTAGCAGGCACT 57.708 40.909 0.00 0.00 43.88 4.40
2590 4476 1.929836 GAATCTTAGCAGGCACTCACG 59.070 52.381 0.00 0.00 34.60 4.35
2597 4483 2.588877 AGGCACTCACGCACACAC 60.589 61.111 0.00 0.00 0.00 3.82
2599 4485 4.000557 GCACTCACGCACACACCG 62.001 66.667 0.00 0.00 0.00 4.94
2718 4604 3.262420 CTTATCAACCACCTCCGAGTTG 58.738 50.000 0.00 0.00 41.75 3.16
2732 4618 1.399089 CGAGTTGAAACCAACCAACGT 59.601 47.619 4.85 0.00 45.19 3.99
2781 4667 4.949856 GGGATGTAATATGTGGCCCAATAG 59.050 45.833 0.00 0.00 34.25 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.834687 TATGGGAGGATACGGGGCAC 60.835 60.000 0.00 0.00 46.39 5.01
33 34 0.118346 ATATGGGAGGATACGGGGCA 59.882 55.000 0.00 0.00 46.39 5.36
34 35 1.286248 AATATGGGAGGATACGGGGC 58.714 55.000 0.00 0.00 46.39 5.80
35 36 2.026262 CCAAATATGGGAGGATACGGGG 60.026 54.545 0.00 0.00 43.51 5.73
36 37 3.350219 CCAAATATGGGAGGATACGGG 57.650 52.381 0.00 0.00 43.51 5.28
55 56 0.398318 GCACCCCTCATATCCAGACC 59.602 60.000 0.00 0.00 0.00 3.85
57 58 1.121407 CGGCACCCCTCATATCCAGA 61.121 60.000 0.00 0.00 0.00 3.86
66 67 4.484872 GGCTAACCGGCACCCCTC 62.485 72.222 0.00 0.00 38.25 4.30
79 80 0.983905 TACCTCAAATGCCCGGGCTA 60.984 55.000 43.34 30.35 42.51 3.93
82 83 1.455383 GCATACCTCAAATGCCCGGG 61.455 60.000 19.09 19.09 43.17 5.73
87 88 0.304705 CGGACGCATACCTCAAATGC 59.695 55.000 0.00 0.00 45.03 3.56
89 90 0.814010 GCCGGACGCATACCTCAAAT 60.814 55.000 5.05 0.00 37.47 2.32
96 97 1.664965 GATCCAGCCGGACGCATAC 60.665 63.158 5.05 0.00 46.79 2.39
98 99 3.451556 CTGATCCAGCCGGACGCAT 62.452 63.158 5.05 0.00 46.79 4.73
99 100 4.147449 CTGATCCAGCCGGACGCA 62.147 66.667 5.05 0.00 46.79 5.24
101 102 0.179073 AAATCTGATCCAGCCGGACG 60.179 55.000 5.05 0.00 46.79 4.79
102 103 1.943340 GAAAATCTGATCCAGCCGGAC 59.057 52.381 5.05 0.00 46.79 4.79
104 105 2.042686 TGAAAATCTGATCCAGCCGG 57.957 50.000 0.00 0.00 0.00 6.13
107 115 3.003068 CGGTCATGAAAATCTGATCCAGC 59.997 47.826 0.00 0.00 0.00 4.85
108 116 3.562973 CCGGTCATGAAAATCTGATCCAG 59.437 47.826 0.00 0.00 0.00 3.86
110 118 3.545703 ACCGGTCATGAAAATCTGATCC 58.454 45.455 0.00 0.00 0.00 3.36
112 120 4.220693 TGACCGGTCATGAAAATCTGAT 57.779 40.909 33.23 0.00 34.14 2.90
114 122 4.156556 ACATTGACCGGTCATGAAAATCTG 59.843 41.667 36.52 22.66 39.64 2.90
123 131 3.055167 TCATTCAGACATTGACCGGTCAT 60.055 43.478 36.52 23.18 39.64 3.06
125 133 2.932614 CTCATTCAGACATTGACCGGTC 59.067 50.000 28.17 28.17 34.94 4.79
134 142 0.463295 CAGCGGGCTCATTCAGACAT 60.463 55.000 0.00 0.00 0.00 3.06
135 143 1.078918 CAGCGGGCTCATTCAGACA 60.079 57.895 0.00 0.00 0.00 3.41
139 147 2.268920 GGACAGCGGGCTCATTCA 59.731 61.111 0.00 0.00 0.00 2.57
141 149 4.473520 CCGGACAGCGGGCTCATT 62.474 66.667 0.00 0.00 0.00 2.57
144 152 4.899239 CATCCGGACAGCGGGCTC 62.899 72.222 6.12 0.00 34.68 4.70
146 154 4.899239 CTCATCCGGACAGCGGGC 62.899 72.222 6.12 0.00 34.68 6.13
158 166 2.798148 AAACACCCCGACGGCTCATC 62.798 60.000 8.86 0.00 33.26 2.92
159 167 2.890766 AAACACCCCGACGGCTCAT 61.891 57.895 8.86 0.00 33.26 2.90
160 168 3.552384 AAACACCCCGACGGCTCA 61.552 61.111 8.86 0.00 33.26 4.26
161 169 3.047877 CAAACACCCCGACGGCTC 61.048 66.667 8.86 0.00 33.26 4.70
162 170 3.530910 CTCAAACACCCCGACGGCT 62.531 63.158 8.86 0.00 33.26 5.52
163 171 3.047877 CTCAAACACCCCGACGGC 61.048 66.667 8.86 0.00 33.26 5.68
164 172 2.358247 CCTCAAACACCCCGACGG 60.358 66.667 6.99 6.99 37.81 4.79
165 173 3.047877 GCCTCAAACACCCCGACG 61.048 66.667 0.00 0.00 0.00 5.12
166 174 2.671963 GGCCTCAAACACCCCGAC 60.672 66.667 0.00 0.00 0.00 4.79
167 175 4.323477 CGGCCTCAAACACCCCGA 62.323 66.667 0.00 0.00 41.34 5.14
169 177 3.802852 AACCGGCCTCAAACACCCC 62.803 63.158 0.00 0.00 0.00 4.95
172 180 0.310854 CTCAAACCGGCCTCAAACAC 59.689 55.000 0.00 0.00 0.00 3.32
201 209 5.689961 GCTAGTTAAAGCTGAGAGCATCTAC 59.310 44.000 0.00 0.00 45.56 2.59
203 211 4.692228 GCTAGTTAAAGCTGAGAGCATCT 58.308 43.478 0.00 0.00 45.56 2.90
220 229 3.736433 GCATCGTTCATGAGTGAGCTAGT 60.736 47.826 0.00 0.00 35.39 2.57
222 231 2.796032 CGCATCGTTCATGAGTGAGCTA 60.796 50.000 0.00 0.00 35.39 3.32
232 241 1.262417 GATCACATGCGCATCGTTCAT 59.738 47.619 22.51 14.91 0.00 2.57
236 245 0.863799 GATGATCACATGCGCATCGT 59.136 50.000 22.51 18.78 36.82 3.73
253 262 0.815213 CAACCCGATGCCACATCGAT 60.815 55.000 26.61 14.16 43.59 3.59
254 263 1.449423 CAACCCGATGCCACATCGA 60.449 57.895 26.61 0.00 43.59 3.59
255 264 2.472059 CCAACCCGATGCCACATCG 61.472 63.158 20.11 20.11 40.86 3.84
258 267 2.282110 CACCAACCCGATGCCACA 60.282 61.111 0.00 0.00 0.00 4.17
260 269 1.195442 TACTCACCAACCCGATGCCA 61.195 55.000 0.00 0.00 0.00 4.92
261 270 0.462047 CTACTCACCAACCCGATGCC 60.462 60.000 0.00 0.00 0.00 4.40
262 271 0.249398 ACTACTCACCAACCCGATGC 59.751 55.000 0.00 0.00 0.00 3.91
263 272 1.548719 TCACTACTCACCAACCCGATG 59.451 52.381 0.00 0.00 0.00 3.84
264 273 1.825474 CTCACTACTCACCAACCCGAT 59.175 52.381 0.00 0.00 0.00 4.18
265 274 1.254026 CTCACTACTCACCAACCCGA 58.746 55.000 0.00 0.00 0.00 5.14
266 275 0.966920 ACTCACTACTCACCAACCCG 59.033 55.000 0.00 0.00 0.00 5.28
267 276 1.002087 CCACTCACTACTCACCAACCC 59.998 57.143 0.00 0.00 0.00 4.11
269 278 3.573110 ACTACCACTCACTACTCACCAAC 59.427 47.826 0.00 0.00 0.00 3.77
271 280 3.520691 ACTACCACTCACTACTCACCA 57.479 47.619 0.00 0.00 0.00 4.17
272 281 6.038050 GTGTATACTACCACTCACTACTCACC 59.962 46.154 4.17 0.00 0.00 4.02
275 284 6.482973 GGAGTGTATACTACCACTCACTACTC 59.517 46.154 18.31 11.26 44.07 2.59
303 312 7.826260 TTTTTCTGAACAAAAATGACAGTCC 57.174 32.000 0.00 0.00 31.65 3.85
311 320 7.445096 CAGGCCCTAATTTTTCTGAACAAAAAT 59.555 33.333 0.00 0.00 44.34 1.82
326 335 6.357367 CAAGTATACAACTCAGGCCCTAATT 58.643 40.000 5.50 0.00 37.50 1.40
327 336 5.687706 GCAAGTATACAACTCAGGCCCTAAT 60.688 44.000 5.50 0.00 37.50 1.73
401 410 8.729756 GTGCAGTGAATAATAATATGCCATACA 58.270 33.333 0.00 0.00 0.00 2.29
403 412 8.729756 GTGTGCAGTGAATAATAATATGCCATA 58.270 33.333 0.00 0.00 0.00 2.74
429 438 1.539388 TCCCATTTGCAAGCGTGTAAG 59.461 47.619 0.00 0.00 30.51 2.34
435 444 1.097232 TCATCTCCCATTTGCAAGCG 58.903 50.000 0.00 0.00 0.00 4.68
436 445 2.494870 ACTTCATCTCCCATTTGCAAGC 59.505 45.455 0.00 0.00 0.00 4.01
437 446 4.337555 CCTACTTCATCTCCCATTTGCAAG 59.662 45.833 0.00 0.00 0.00 4.01
438 447 4.018506 TCCTACTTCATCTCCCATTTGCAA 60.019 41.667 0.00 0.00 0.00 4.08
439 448 3.523157 TCCTACTTCATCTCCCATTTGCA 59.477 43.478 0.00 0.00 0.00 4.08
440 449 3.879892 GTCCTACTTCATCTCCCATTTGC 59.120 47.826 0.00 0.00 0.00 3.68
441 450 4.122776 CGTCCTACTTCATCTCCCATTTG 58.877 47.826 0.00 0.00 0.00 2.32
442 451 3.432326 GCGTCCTACTTCATCTCCCATTT 60.432 47.826 0.00 0.00 0.00 2.32
453 470 4.797349 GTGTACTGTATTGCGTCCTACTTC 59.203 45.833 0.00 0.00 0.00 3.01
487 504 5.070001 TGACAAAACATCTTAAGGGTGAGG 58.930 41.667 13.46 4.63 0.00 3.86
488 505 5.335191 GCTGACAAAACATCTTAAGGGTGAG 60.335 44.000 13.46 5.17 0.00 3.51
491 508 4.729868 AGCTGACAAAACATCTTAAGGGT 58.270 39.130 1.85 0.00 0.00 4.34
492 509 4.761739 TGAGCTGACAAAACATCTTAAGGG 59.238 41.667 1.85 0.00 0.00 3.95
493 510 5.947228 TGAGCTGACAAAACATCTTAAGG 57.053 39.130 1.85 0.00 0.00 2.69
494 511 9.713740 GATATTGAGCTGACAAAACATCTTAAG 57.286 33.333 0.00 0.00 33.44 1.85
496 513 8.886719 CAGATATTGAGCTGACAAAACATCTTA 58.113 33.333 0.00 0.00 41.90 2.10
497 514 7.627939 GCAGATATTGAGCTGACAAAACATCTT 60.628 37.037 0.00 0.00 41.90 2.40
498 515 6.183360 GCAGATATTGAGCTGACAAAACATCT 60.183 38.462 0.00 0.00 41.90 2.90
499 516 5.970023 GCAGATATTGAGCTGACAAAACATC 59.030 40.000 0.00 0.00 41.90 3.06
500 517 5.448225 CGCAGATATTGAGCTGACAAAACAT 60.448 40.000 0.00 0.00 41.90 2.71
502 519 4.142816 ACGCAGATATTGAGCTGACAAAAC 60.143 41.667 0.00 0.00 41.90 2.43
504 521 3.599343 ACGCAGATATTGAGCTGACAAA 58.401 40.909 0.00 0.00 41.90 2.83
505 522 3.251479 ACGCAGATATTGAGCTGACAA 57.749 42.857 0.00 0.00 41.90 3.18
506 523 2.967599 ACGCAGATATTGAGCTGACA 57.032 45.000 0.00 0.00 41.90 3.58
507 524 3.706698 TGTACGCAGATATTGAGCTGAC 58.293 45.455 0.00 0.00 41.90 3.51
508 525 3.243535 CCTGTACGCAGATATTGAGCTGA 60.244 47.826 0.00 0.00 41.90 4.26
510 527 2.959030 TCCTGTACGCAGATATTGAGCT 59.041 45.455 0.00 0.00 45.28 4.09
515 1546 2.545952 CGGCTTCCTGTACGCAGATATT 60.546 50.000 0.00 0.00 45.28 1.28
520 1551 1.517257 CTCGGCTTCCTGTACGCAG 60.517 63.158 0.00 0.00 42.22 5.18
525 1556 2.584236 GATCTACCTCGGCTTCCTGTA 58.416 52.381 0.00 0.00 0.00 2.74
529 1560 0.030908 CACGATCTACCTCGGCTTCC 59.969 60.000 0.00 0.00 42.88 3.46
542 1573 2.924290 GGAGCTAGACACAAACACGATC 59.076 50.000 0.00 0.00 0.00 3.69
544 1575 1.961394 AGGAGCTAGACACAAACACGA 59.039 47.619 0.00 0.00 0.00 4.35
545 1576 2.440539 AGGAGCTAGACACAAACACG 57.559 50.000 0.00 0.00 0.00 4.49
546 1577 3.067833 GGAAGGAGCTAGACACAAACAC 58.932 50.000 0.00 0.00 0.00 3.32
547 1578 2.288825 CGGAAGGAGCTAGACACAAACA 60.289 50.000 0.00 0.00 0.00 2.83
548 1579 2.288886 ACGGAAGGAGCTAGACACAAAC 60.289 50.000 0.00 0.00 0.00 2.93
553 1600 2.217510 AAGACGGAAGGAGCTAGACA 57.782 50.000 0.00 0.00 0.00 3.41
554 1601 2.417515 CCAAAGACGGAAGGAGCTAGAC 60.418 54.545 0.00 0.00 0.00 2.59
559 1606 1.157585 GTTCCAAAGACGGAAGGAGC 58.842 55.000 0.00 0.00 45.71 4.70
568 1615 1.745653 GGCTGGCTATGTTCCAAAGAC 59.254 52.381 0.00 0.00 32.41 3.01
571 1618 2.300956 TTGGCTGGCTATGTTCCAAA 57.699 45.000 2.00 0.00 34.24 3.28
573 1620 2.496871 CAAATTGGCTGGCTATGTTCCA 59.503 45.455 2.00 0.00 0.00 3.53
601 1648 3.002348 GGTTGGAATTAGGAAAGCGATCG 59.998 47.826 11.69 11.69 0.00 3.69
602 1649 3.002348 CGGTTGGAATTAGGAAAGCGATC 59.998 47.826 0.00 0.00 43.96 3.69
641 1688 3.436700 GCCTATAATTGCGTGGCTTTT 57.563 42.857 0.00 0.00 40.36 2.27
656 1703 8.624776 GCAGTTGAATTAAATTAGTCAGCCTAT 58.375 33.333 0.00 0.00 0.00 2.57
704 1751 4.781616 TGGGTGGCCGGTCGGATA 62.782 66.667 14.15 0.00 37.50 2.59
724 1771 4.718961 GGGTGGCAGAATTACATGTCTAT 58.281 43.478 0.00 0.00 0.00 1.98
725 1772 3.431626 CGGGTGGCAGAATTACATGTCTA 60.432 47.826 0.00 0.00 0.00 2.59
726 1773 2.680805 CGGGTGGCAGAATTACATGTCT 60.681 50.000 0.00 0.00 0.00 3.41
768 1819 1.280710 ACTTGTGGGCGTATTGATGGA 59.719 47.619 0.00 0.00 0.00 3.41
804 1855 4.466828 GCATTGTATGTATTTGCGGCTAG 58.533 43.478 0.00 0.00 0.00 3.42
805 1856 4.481930 GCATTGTATGTATTTGCGGCTA 57.518 40.909 0.00 0.00 0.00 3.93
845 1901 7.757624 GCTCGATTATAATTGGTTTTTGTTCCA 59.242 33.333 11.99 0.00 0.00 3.53
846 1902 7.044314 CGCTCGATTATAATTGGTTTTTGTTCC 60.044 37.037 11.99 0.00 0.00 3.62
847 1903 7.694784 TCGCTCGATTATAATTGGTTTTTGTTC 59.305 33.333 11.99 0.00 0.00 3.18
848 1904 7.483691 GTCGCTCGATTATAATTGGTTTTTGTT 59.516 33.333 11.99 0.00 0.00 2.83
850 1906 6.413818 GGTCGCTCGATTATAATTGGTTTTTG 59.586 38.462 11.99 0.00 0.00 2.44
851 1907 6.317893 AGGTCGCTCGATTATAATTGGTTTTT 59.682 34.615 11.99 0.00 0.00 1.94
852 1908 5.820947 AGGTCGCTCGATTATAATTGGTTTT 59.179 36.000 11.99 0.00 0.00 2.43
855 1911 4.602340 AGGTCGCTCGATTATAATTGGT 57.398 40.909 11.99 0.00 0.00 3.67
857 1913 9.569167 TTAGATTAGGTCGCTCGATTATAATTG 57.431 33.333 6.38 6.38 0.00 2.32
859 1915 9.953697 GATTAGATTAGGTCGCTCGATTATAAT 57.046 33.333 0.00 0.00 0.00 1.28
860 1916 8.953313 TGATTAGATTAGGTCGCTCGATTATAA 58.047 33.333 0.00 0.00 0.00 0.98
861 1917 8.396390 GTGATTAGATTAGGTCGCTCGATTATA 58.604 37.037 0.00 0.00 0.00 0.98
862 1918 7.251994 GTGATTAGATTAGGTCGCTCGATTAT 58.748 38.462 0.00 0.00 0.00 1.28
863 1919 6.609533 GTGATTAGATTAGGTCGCTCGATTA 58.390 40.000 0.00 0.00 0.00 1.75
887 1943 1.949847 AAGACCCGCTGATCTGACCG 61.950 60.000 3.42 0.00 0.00 4.79
985 2044 1.562475 GGGTATTTGTAGAGCCCCACA 59.438 52.381 0.00 0.00 33.40 4.17
1065 2142 1.787057 CGACTCTCTTCGATCCCCCG 61.787 65.000 0.00 0.00 41.78 5.73
1066 2143 1.457009 CCGACTCTCTTCGATCCCCC 61.457 65.000 0.00 0.00 41.78 5.40
1067 2144 2.034607 CCGACTCTCTTCGATCCCC 58.965 63.158 0.00 0.00 41.78 4.81
1068 2145 1.360911 GCCGACTCTCTTCGATCCC 59.639 63.158 0.00 0.00 41.78 3.85
1069 2146 1.009449 CGCCGACTCTCTTCGATCC 60.009 63.158 0.00 0.00 41.78 3.36
1070 2147 0.041663 CTCGCCGACTCTCTTCGATC 60.042 60.000 0.00 0.00 41.78 3.69
1071 2148 1.440938 CCTCGCCGACTCTCTTCGAT 61.441 60.000 0.00 0.00 41.78 3.59
1072 2149 2.107292 CCTCGCCGACTCTCTTCGA 61.107 63.158 0.00 0.00 41.78 3.71
1073 2150 2.042520 CTCCTCGCCGACTCTCTTCG 62.043 65.000 0.00 0.00 38.80 3.79
1074 2151 1.720694 CCTCCTCGCCGACTCTCTTC 61.721 65.000 0.00 0.00 0.00 2.87
1075 2152 1.751162 CCTCCTCGCCGACTCTCTT 60.751 63.158 0.00 0.00 0.00 2.85
1076 2153 2.124487 CCTCCTCGCCGACTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
1077 2154 2.124653 TCCTCCTCGCCGACTCTC 60.125 66.667 0.00 0.00 0.00 3.20
1300 2383 4.430765 CCCCTTGGACGACGACGG 62.431 72.222 12.58 0.00 44.46 4.79
1301 2384 3.338126 CTCCCCTTGGACGACGACG 62.338 68.421 5.58 5.58 45.75 5.12
1311 2394 3.093172 GGCCTCCTCCTCCCCTTG 61.093 72.222 0.00 0.00 0.00 3.61
1344 2427 2.367512 ATGCCCCACTCCTCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
1345 2428 2.750657 CCATGCCCCACTCCTCCTC 61.751 68.421 0.00 0.00 0.00 3.71
1346 2429 2.693864 CCATGCCCCACTCCTCCT 60.694 66.667 0.00 0.00 0.00 3.69
1425 2508 1.049289 AGTAGATGGCCCCGGAGAAC 61.049 60.000 0.73 0.00 0.00 3.01
1595 2678 4.467769 CATGGATGGATCTTGGCTAAGTT 58.532 43.478 9.87 0.90 35.38 2.66
1600 2683 0.178970 GGCATGGATGGATCTTGGCT 60.179 55.000 0.00 0.00 34.85 4.75
1613 2696 1.335882 TGAGGCAGAGAGAGGCATGG 61.336 60.000 0.00 0.00 0.00 3.66
1640 2726 2.287915 CGGCAATAGAACCATGTACAGC 59.712 50.000 0.33 0.00 0.00 4.40
1676 2762 3.412722 TCTCGAGAGGAGATGAGCC 57.587 57.895 12.08 0.00 46.80 4.70
1739 2825 4.525411 AAACTTCTTTTACACGGTGTCG 57.475 40.909 18.43 5.35 43.02 4.35
1765 2851 4.675510 ACTGAGATTTTGCAACACTGTTG 58.324 39.130 16.36 16.36 0.00 3.33
1775 2861 9.624697 TTAATACAACATCAACTGAGATTTTGC 57.375 29.630 11.00 0.00 38.58 3.68
1808 2894 7.014326 TGAGATTTAGCACGGTCTCTATGTAAT 59.986 37.037 9.56 0.00 38.29 1.89
1815 2901 4.744795 ATTGAGATTTAGCACGGTCTCT 57.255 40.909 9.56 0.00 38.29 3.10
1840 2926 9.725019 ACAAAGTCTCAATCAACTGACATAATA 57.275 29.630 0.00 0.00 32.41 0.98
1841 2927 8.627208 ACAAAGTCTCAATCAACTGACATAAT 57.373 30.769 0.00 0.00 32.41 1.28
1842 2928 7.095649 CGACAAAGTCTCAATCAACTGACATAA 60.096 37.037 0.00 0.00 32.41 1.90
1843 2929 6.366061 CGACAAAGTCTCAATCAACTGACATA 59.634 38.462 0.00 0.00 32.41 2.29
1844 2930 5.178252 CGACAAAGTCTCAATCAACTGACAT 59.822 40.000 0.00 0.00 32.41 3.06
1845 2931 4.507756 CGACAAAGTCTCAATCAACTGACA 59.492 41.667 0.00 0.00 32.41 3.58
1846 2932 4.745125 TCGACAAAGTCTCAATCAACTGAC 59.255 41.667 0.00 0.00 0.00 3.51
1847 2933 4.944048 TCGACAAAGTCTCAATCAACTGA 58.056 39.130 0.00 0.00 0.00 3.41
1848 2934 4.747108 ACTCGACAAAGTCTCAATCAACTG 59.253 41.667 0.00 0.00 0.00 3.16
1849 2935 4.747108 CACTCGACAAAGTCTCAATCAACT 59.253 41.667 0.00 0.00 0.00 3.16
1850 2936 4.745125 TCACTCGACAAAGTCTCAATCAAC 59.255 41.667 0.00 0.00 0.00 3.18
1851 2937 4.944048 TCACTCGACAAAGTCTCAATCAA 58.056 39.130 0.00 0.00 0.00 2.57
1852 2938 4.278419 TCTCACTCGACAAAGTCTCAATCA 59.722 41.667 0.00 0.00 0.00 2.57
1853 2939 4.799678 TCTCACTCGACAAAGTCTCAATC 58.200 43.478 0.00 0.00 0.00 2.67
1854 2940 4.855715 TCTCACTCGACAAAGTCTCAAT 57.144 40.909 0.00 0.00 0.00 2.57
1855 2941 4.321304 GGATCTCACTCGACAAAGTCTCAA 60.321 45.833 0.00 0.00 0.00 3.02
1856 2942 3.191581 GGATCTCACTCGACAAAGTCTCA 59.808 47.826 0.00 0.00 0.00 3.27
1857 2943 3.191581 TGGATCTCACTCGACAAAGTCTC 59.808 47.826 0.00 0.00 0.00 3.36
1858 2944 3.157881 TGGATCTCACTCGACAAAGTCT 58.842 45.455 0.00 0.00 0.00 3.24
1859 2945 3.506810 CTGGATCTCACTCGACAAAGTC 58.493 50.000 0.00 0.00 0.00 3.01
1860 2946 2.353208 GCTGGATCTCACTCGACAAAGT 60.353 50.000 0.00 0.00 0.00 2.66
1861 2947 2.266554 GCTGGATCTCACTCGACAAAG 58.733 52.381 0.00 0.00 0.00 2.77
1862 2948 1.066858 GGCTGGATCTCACTCGACAAA 60.067 52.381 0.00 0.00 0.00 2.83
1863 2949 0.532573 GGCTGGATCTCACTCGACAA 59.467 55.000 0.00 0.00 0.00 3.18
1864 2950 0.611896 TGGCTGGATCTCACTCGACA 60.612 55.000 0.00 0.00 0.00 4.35
1865 2951 0.179124 GTGGCTGGATCTCACTCGAC 60.179 60.000 0.00 0.00 0.00 4.20
1866 2952 0.611896 TGTGGCTGGATCTCACTCGA 60.612 55.000 0.00 0.00 33.04 4.04
1867 2953 0.459237 GTGTGGCTGGATCTCACTCG 60.459 60.000 0.00 0.00 33.04 4.18
1868 2954 0.107945 GGTGTGGCTGGATCTCACTC 60.108 60.000 0.00 0.00 33.04 3.51
1869 2955 0.546267 AGGTGTGGCTGGATCTCACT 60.546 55.000 0.00 0.00 33.04 3.41
1870 2956 0.326264 AAGGTGTGGCTGGATCTCAC 59.674 55.000 0.00 0.00 0.00 3.51
1871 2957 1.067295 AAAGGTGTGGCTGGATCTCA 58.933 50.000 0.00 0.00 0.00 3.27
1872 2958 3.350219 TTAAAGGTGTGGCTGGATCTC 57.650 47.619 0.00 0.00 0.00 2.75
1873 2959 3.624777 CATTAAAGGTGTGGCTGGATCT 58.375 45.455 0.00 0.00 0.00 2.75
1874 2960 2.099756 GCATTAAAGGTGTGGCTGGATC 59.900 50.000 0.00 0.00 0.00 3.36
1875 2961 2.102578 GCATTAAAGGTGTGGCTGGAT 58.897 47.619 0.00 0.00 0.00 3.41
1876 2962 1.202989 TGCATTAAAGGTGTGGCTGGA 60.203 47.619 0.00 0.00 0.00 3.86
1877 2963 1.203052 CTGCATTAAAGGTGTGGCTGG 59.797 52.381 0.00 0.00 0.00 4.85
1878 2964 1.403249 GCTGCATTAAAGGTGTGGCTG 60.403 52.381 0.00 0.00 0.00 4.85
1879 2965 0.890683 GCTGCATTAAAGGTGTGGCT 59.109 50.000 0.00 0.00 0.00 4.75
1880 2966 0.890683 AGCTGCATTAAAGGTGTGGC 59.109 50.000 1.02 0.00 0.00 5.01
1881 2967 3.428045 GCTAAGCTGCATTAAAGGTGTGG 60.428 47.826 1.02 0.00 0.00 4.17
1882 2968 3.441572 AGCTAAGCTGCATTAAAGGTGTG 59.558 43.478 1.02 0.00 37.57 3.82
1883 2969 3.690460 AGCTAAGCTGCATTAAAGGTGT 58.310 40.909 1.02 0.00 37.57 4.16
1884 2970 4.418392 CAAGCTAAGCTGCATTAAAGGTG 58.582 43.478 1.02 0.00 39.62 4.00
1885 2971 3.119352 GCAAGCTAAGCTGCATTAAAGGT 60.119 43.478 1.02 0.00 39.62 3.50
1886 2972 3.129988 AGCAAGCTAAGCTGCATTAAAGG 59.870 43.478 12.33 0.00 41.61 3.11
1887 2973 4.349501 GAGCAAGCTAAGCTGCATTAAAG 58.650 43.478 17.31 0.00 43.58 1.85
1888 2974 4.361451 GAGCAAGCTAAGCTGCATTAAA 57.639 40.909 17.31 0.00 43.58 1.52
1895 2981 1.093159 CCAAGGAGCAAGCTAAGCTG 58.907 55.000 17.31 4.98 43.58 4.24
1896 2982 0.695347 ACCAAGGAGCAAGCTAAGCT 59.305 50.000 12.90 12.90 46.82 3.74
1897 2983 1.470494 GAACCAAGGAGCAAGCTAAGC 59.530 52.381 3.00 3.00 0.00 3.09
1898 2984 3.006247 GAGAACCAAGGAGCAAGCTAAG 58.994 50.000 0.00 0.00 0.00 2.18
1899 2985 2.290323 GGAGAACCAAGGAGCAAGCTAA 60.290 50.000 0.00 0.00 35.97 3.09
1900 2986 1.279271 GGAGAACCAAGGAGCAAGCTA 59.721 52.381 0.00 0.00 35.97 3.32
1901 2987 0.037447 GGAGAACCAAGGAGCAAGCT 59.963 55.000 0.00 0.00 35.97 3.74
1902 2988 0.250901 TGGAGAACCAAGGAGCAAGC 60.251 55.000 0.00 0.00 43.91 4.01
1912 2998 3.516615 CGCAAAAACTTTTGGAGAACCA 58.483 40.909 14.92 0.00 45.73 3.67
1913 2999 2.284150 GCGCAAAAACTTTTGGAGAACC 59.716 45.455 14.92 0.00 45.73 3.62
1914 3000 3.000222 CAGCGCAAAAACTTTTGGAGAAC 60.000 43.478 11.47 0.00 45.73 3.01
1915 3001 3.119316 TCAGCGCAAAAACTTTTGGAGAA 60.119 39.130 11.47 0.00 45.73 2.87
1916 3002 2.425312 TCAGCGCAAAAACTTTTGGAGA 59.575 40.909 11.47 6.18 45.73 3.71
1917 3003 2.808244 TCAGCGCAAAAACTTTTGGAG 58.192 42.857 11.47 1.71 45.73 3.86
1918 3004 2.949451 TCAGCGCAAAAACTTTTGGA 57.051 40.000 11.47 3.18 45.73 3.53
1919 3005 3.383761 AGATCAGCGCAAAAACTTTTGG 58.616 40.909 11.47 7.67 45.73 3.28
1921 3007 4.741676 CAGAAGATCAGCGCAAAAACTTTT 59.258 37.500 11.47 0.97 0.00 2.27
1922 3008 4.293415 CAGAAGATCAGCGCAAAAACTTT 58.707 39.130 11.47 0.00 0.00 2.66
1923 3009 3.854784 GCAGAAGATCAGCGCAAAAACTT 60.855 43.478 11.47 8.38 0.00 2.66
1924 3010 2.351157 GCAGAAGATCAGCGCAAAAACT 60.351 45.455 11.47 0.00 0.00 2.66
1925 3011 1.981533 GCAGAAGATCAGCGCAAAAAC 59.018 47.619 11.47 0.00 0.00 2.43
1926 3012 1.608109 TGCAGAAGATCAGCGCAAAAA 59.392 42.857 11.47 0.00 30.93 1.94
1927 3013 1.198408 CTGCAGAAGATCAGCGCAAAA 59.802 47.619 8.42 0.00 30.93 2.44
1928 3014 0.800631 CTGCAGAAGATCAGCGCAAA 59.199 50.000 8.42 0.00 30.93 3.68
1929 3015 0.321034 ACTGCAGAAGATCAGCGCAA 60.321 50.000 23.35 0.00 30.93 4.85
1930 3016 0.321034 AACTGCAGAAGATCAGCGCA 60.321 50.000 23.35 0.00 30.93 6.09
1931 3017 0.801251 AAACTGCAGAAGATCAGCGC 59.199 50.000 23.35 0.00 30.93 5.92
1932 3018 2.847901 CAAAACTGCAGAAGATCAGCG 58.152 47.619 23.35 0.00 30.93 5.18
1933 3019 2.228343 AGCAAAACTGCAGAAGATCAGC 59.772 45.455 23.35 13.98 37.25 4.26
1934 3020 4.500603 AAGCAAAACTGCAGAAGATCAG 57.499 40.909 23.35 4.38 37.25 2.90
1935 3021 4.338964 TGAAAGCAAAACTGCAGAAGATCA 59.661 37.500 23.35 10.21 37.25 2.92
1936 3022 4.863491 TGAAAGCAAAACTGCAGAAGATC 58.137 39.130 23.35 6.33 37.25 2.75
1937 3023 4.924305 TGAAAGCAAAACTGCAGAAGAT 57.076 36.364 23.35 2.36 37.25 2.40
1938 3024 4.338964 TGATGAAAGCAAAACTGCAGAAGA 59.661 37.500 23.35 0.00 37.25 2.87
1939 3025 4.443394 GTGATGAAAGCAAAACTGCAGAAG 59.557 41.667 23.35 7.88 28.10 2.85
1940 3026 4.098349 AGTGATGAAAGCAAAACTGCAGAA 59.902 37.500 23.35 0.00 28.10 3.02
1941 3027 3.633525 AGTGATGAAAGCAAAACTGCAGA 59.366 39.130 23.35 0.00 28.10 4.26
1942 3028 3.734231 CAGTGATGAAAGCAAAACTGCAG 59.266 43.478 13.48 13.48 35.84 4.41
1943 3029 3.130869 ACAGTGATGAAAGCAAAACTGCA 59.869 39.130 0.00 0.00 41.55 4.41
1944 3030 3.488310 CACAGTGATGAAAGCAAAACTGC 59.512 43.478 0.00 0.00 41.55 4.40
1945 3031 4.923893 TCACAGTGATGAAAGCAAAACTG 58.076 39.130 0.00 0.00 42.59 3.16
1946 3032 4.641989 ACTCACAGTGATGAAAGCAAAACT 59.358 37.500 2.97 0.00 28.10 2.66
1947 3033 4.925068 ACTCACAGTGATGAAAGCAAAAC 58.075 39.130 2.97 0.00 28.10 2.43
1972 3058 9.865321 CAAGGTCATGTATTTCTGAATGAAAAT 57.135 29.630 0.00 0.00 46.32 1.82
1979 3781 5.534278 TGCAACAAGGTCATGTATTTCTGAA 59.466 36.000 0.00 0.00 32.02 3.02
1995 3797 8.641499 TTTTTAGAGGTACAATTTGCAACAAG 57.359 30.769 0.00 0.00 0.00 3.16
1996 3798 9.039870 CATTTTTAGAGGTACAATTTGCAACAA 57.960 29.630 0.00 0.00 0.00 2.83
1997 3799 7.170658 GCATTTTTAGAGGTACAATTTGCAACA 59.829 33.333 0.00 0.00 0.00 3.33
1998 3800 7.384932 AGCATTTTTAGAGGTACAATTTGCAAC 59.615 33.333 0.00 0.00 0.00 4.17
1999 3801 7.441017 AGCATTTTTAGAGGTACAATTTGCAA 58.559 30.769 0.00 0.00 0.00 4.08
2000 3802 6.991938 AGCATTTTTAGAGGTACAATTTGCA 58.008 32.000 0.00 0.00 0.00 4.08
2026 3828 8.832735 TGGGTAGAAGAACATTTACTAGGAATT 58.167 33.333 0.00 0.00 0.00 2.17
2037 3839 5.193679 GGCATTAGTGGGTAGAAGAACATT 58.806 41.667 0.00 0.00 0.00 2.71
2061 3863 1.737793 GTGCATCTACAAGTTTCCGGG 59.262 52.381 0.00 0.00 0.00 5.73
2077 3879 0.970427 TGCCCTCTCATCTACGTGCA 60.970 55.000 0.00 0.00 0.00 4.57
2083 3885 1.816537 GCGTGTGCCCTCTCATCTA 59.183 57.895 0.00 0.00 33.98 1.98
2100 3902 4.098807 TGAAACCTAAAACTTTGGACAGGC 59.901 41.667 0.00 0.00 0.00 4.85
2101 3903 5.845391 TGAAACCTAAAACTTTGGACAGG 57.155 39.130 0.00 0.00 0.00 4.00
2102 3904 7.959733 GTTTTGAAACCTAAAACTTTGGACAG 58.040 34.615 0.00 0.00 42.07 3.51
2132 3997 1.821216 AAACTTGGTACCAGCGGATG 58.179 50.000 15.65 5.30 0.00 3.51
2133 3998 2.579410 AAAACTTGGTACCAGCGGAT 57.421 45.000 15.65 1.86 0.00 4.18
2135 4000 3.078837 ACATAAAACTTGGTACCAGCGG 58.921 45.455 15.65 11.78 0.00 5.52
2136 4001 4.759516 AACATAAAACTTGGTACCAGCG 57.240 40.909 15.65 12.77 0.00 5.18
2137 4002 6.759356 ACAAAAACATAAAACTTGGTACCAGC 59.241 34.615 15.65 0.00 0.00 4.85
2138 4003 7.166804 CGACAAAAACATAAAACTTGGTACCAG 59.833 37.037 15.65 11.81 0.00 4.00
2141 4006 7.974243 ACGACAAAAACATAAAACTTGGTAC 57.026 32.000 0.00 0.00 0.00 3.34
2144 4009 6.680758 GCAAACGACAAAAACATAAAACTTGG 59.319 34.615 0.00 0.00 0.00 3.61
2145 4010 7.452231 AGCAAACGACAAAAACATAAAACTTG 58.548 30.769 0.00 0.00 0.00 3.16
2154 4019 2.904011 ACGAGCAAACGACAAAAACA 57.096 40.000 5.12 0.00 37.03 2.83
2160 4025 1.202440 ACTTGGTACGAGCAAACGACA 60.202 47.619 5.12 0.00 34.95 4.35
2236 4101 4.014406 ACGAGGGTTTTCAAATATGACCC 58.986 43.478 0.00 0.00 38.90 4.46
2237 4102 4.698304 TGACGAGGGTTTTCAAATATGACC 59.302 41.667 0.00 0.00 34.61 4.02
2238 4103 5.642063 TCTGACGAGGGTTTTCAAATATGAC 59.358 40.000 0.00 0.00 34.61 3.06
2241 4106 6.488683 TGTTTCTGACGAGGGTTTTCAAATAT 59.511 34.615 0.00 0.00 0.00 1.28
2247 4112 2.940410 TGTGTTTCTGACGAGGGTTTTC 59.060 45.455 0.00 0.00 0.00 2.29
2250 4115 2.702592 TTGTGTTTCTGACGAGGGTT 57.297 45.000 0.00 0.00 0.00 4.11
2251 4116 2.702592 TTTGTGTTTCTGACGAGGGT 57.297 45.000 0.00 0.00 0.00 4.34
2260 4125 6.978080 AGTTTCGTTTGCATATTTGTGTTTCT 59.022 30.769 0.00 0.00 0.00 2.52
2268 4133 9.482627 TCCAAATTAAGTTTCGTTTGCATATTT 57.517 25.926 0.00 0.00 31.87 1.40
2316 4181 6.503570 TCCCCATTATTTTGATTTTCAACCCT 59.496 34.615 0.00 0.00 35.89 4.34
2317 4182 6.716284 TCCCCATTATTTTGATTTTCAACCC 58.284 36.000 0.00 0.00 35.89 4.11
2319 4184 8.667463 CACATCCCCATTATTTTGATTTTCAAC 58.333 33.333 0.00 0.00 35.89 3.18
2322 4187 7.201635 GCACACATCCCCATTATTTTGATTTTC 60.202 37.037 0.00 0.00 0.00 2.29
2367 4248 7.214460 TCAGGGGTGTAATATGTGGATTTTA 57.786 36.000 0.00 0.00 0.00 1.52
2371 4252 5.930209 ATTCAGGGGTGTAATATGTGGAT 57.070 39.130 0.00 0.00 0.00 3.41
2372 4253 5.192722 TGAATTCAGGGGTGTAATATGTGGA 59.807 40.000 3.38 0.00 0.00 4.02
2375 4256 6.327386 AGTGAATTCAGGGGTGTAATATGT 57.673 37.500 8.80 0.00 0.00 2.29
2376 4257 6.710744 GGTAGTGAATTCAGGGGTGTAATATG 59.289 42.308 8.80 0.00 0.00 1.78
2377 4258 6.619852 AGGTAGTGAATTCAGGGGTGTAATAT 59.380 38.462 8.80 0.00 0.00 1.28
2378 4259 5.968167 AGGTAGTGAATTCAGGGGTGTAATA 59.032 40.000 8.80 0.00 0.00 0.98
2379 4260 4.788617 AGGTAGTGAATTCAGGGGTGTAAT 59.211 41.667 8.80 0.00 0.00 1.89
2380 4261 4.172807 AGGTAGTGAATTCAGGGGTGTAA 58.827 43.478 8.80 0.00 0.00 2.41
2382 4263 2.632537 AGGTAGTGAATTCAGGGGTGT 58.367 47.619 8.80 0.00 0.00 4.16
2384 4265 3.256704 TCAAGGTAGTGAATTCAGGGGT 58.743 45.455 8.80 0.00 0.00 4.95
2387 4268 8.915057 ATGAATATCAAGGTAGTGAATTCAGG 57.085 34.615 8.80 0.00 37.82 3.86
2392 4273 8.906867 CCACAAATGAATATCAAGGTAGTGAAT 58.093 33.333 0.00 0.00 0.00 2.57
2403 4284 6.429692 ACGTGAAAGTCCACAAATGAATATCA 59.570 34.615 0.00 0.00 36.89 2.15
2407 4288 4.578516 TGACGTGAAAGTCCACAAATGAAT 59.421 37.500 0.00 0.00 40.26 2.57
2458 4340 8.557029 AGTCAAAATACAACAGCTAACAAGTAC 58.443 33.333 0.00 0.00 0.00 2.73
2460 4342 7.568199 AGTCAAAATACAACAGCTAACAAGT 57.432 32.000 0.00 0.00 0.00 3.16
2468 4350 8.726988 TGATACCTTAAGTCAAAATACAACAGC 58.273 33.333 0.97 0.00 0.00 4.40
2478 4360 7.662669 GGGTAAACACTGATACCTTAAGTCAAA 59.337 37.037 0.97 0.00 41.13 2.69
2481 4363 6.944096 AGGGTAAACACTGATACCTTAAGTC 58.056 40.000 0.97 0.00 41.13 3.01
2482 4364 6.729569 AGAGGGTAAACACTGATACCTTAAGT 59.270 38.462 0.97 0.00 41.13 2.24
2483 4365 7.184067 AGAGGGTAAACACTGATACCTTAAG 57.816 40.000 12.51 0.00 41.13 1.85
2484 4366 7.236019 TGAAGAGGGTAAACACTGATACCTTAA 59.764 37.037 12.51 0.00 41.13 1.85
2496 4382 3.630312 GTGCTTTGTGAAGAGGGTAAACA 59.370 43.478 0.00 0.00 34.71 2.83
2509 4395 1.069703 CACATCTGTCCGTGCTTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
2510 4396 1.229428 CACATCTGTCCGTGCTTTGT 58.771 50.000 0.00 0.00 0.00 2.83
2512 4398 1.229428 CACACATCTGTCCGTGCTTT 58.771 50.000 0.00 0.00 36.57 3.51
2521 4407 2.092968 ACTGTTCCACACACACATCTGT 60.093 45.455 0.00 0.00 0.00 3.41
2522 4408 2.564771 ACTGTTCCACACACACATCTG 58.435 47.619 0.00 0.00 0.00 2.90
2526 4412 6.016693 CCATAAATTACTGTTCCACACACACA 60.017 38.462 0.00 0.00 0.00 3.72
2527 4413 6.378582 CCATAAATTACTGTTCCACACACAC 58.621 40.000 0.00 0.00 0.00 3.82
2528 4414 5.475220 CCCATAAATTACTGTTCCACACACA 59.525 40.000 0.00 0.00 0.00 3.72
2529 4415 5.105917 CCCCATAAATTACTGTTCCACACAC 60.106 44.000 0.00 0.00 0.00 3.82
2550 4436 4.021102 TCTTTCAACTCTCAATGTCCCC 57.979 45.455 0.00 0.00 0.00 4.81
2586 4472 1.153529 AAACTCGGTGTGTGCGTGA 60.154 52.632 0.00 0.00 0.00 4.35
2590 4476 3.063452 CCATATACAAACTCGGTGTGTGC 59.937 47.826 9.36 0.00 37.41 4.57
2597 4483 5.300752 AGCAATCTCCATATACAAACTCGG 58.699 41.667 0.00 0.00 0.00 4.63
2599 4485 6.426328 CCAGAGCAATCTCCATATACAAACTC 59.574 42.308 0.00 0.00 40.22 3.01
2643 4529 1.173913 GCACCCAACCCAAGTACATC 58.826 55.000 0.00 0.00 0.00 3.06
2718 4604 3.816523 TCCTTCATACGTTGGTTGGTTTC 59.183 43.478 0.00 0.00 0.00 2.78
2732 4618 6.380274 ACGATTAACCACTCTTCTCCTTCATA 59.620 38.462 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.