Multiple sequence alignment - TraesCS6D01G257200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G257200 chr6D 100.000 5940 0 0 1 5940 363069764 363063825 0.000000e+00 10970.0
1 TraesCS6D01G257200 chr6D 85.774 239 28 5 214 448 329073729 329073493 1.280000e-61 248.0
2 TraesCS6D01G257200 chr6D 96.386 83 3 0 1 83 228955224 228955306 2.890000e-28 137.0
3 TraesCS6D01G257200 chr6D 96.386 83 3 0 1 83 228980977 228981059 2.890000e-28 137.0
4 TraesCS6D01G257200 chr6A 95.465 3043 88 16 1738 4764 503773245 503770237 0.000000e+00 4809.0
5 TraesCS6D01G257200 chr6A 91.232 1015 40 8 668 1650 503774304 503773307 0.000000e+00 1336.0
6 TraesCS6D01G257200 chr6A 86.680 518 46 19 5185 5699 503769950 503769453 2.420000e-153 553.0
7 TraesCS6D01G257200 chr6A 88.837 430 41 3 150 576 503774728 503774303 6.820000e-144 521.0
8 TraesCS6D01G257200 chr6A 95.200 250 9 2 5629 5878 503769436 503769190 5.580000e-105 392.0
9 TraesCS6D01G257200 chr6A 86.134 238 28 4 214 447 383969090 383968854 9.880000e-63 252.0
10 TraesCS6D01G257200 chr6A 100.000 40 0 0 4755 4794 503770227 503770188 2.300000e-09 75.0
11 TraesCS6D01G257200 chr6A 97.619 42 1 0 528 569 448217200 448217159 8.260000e-09 73.1
12 TraesCS6D01G257200 chr6B 93.438 2225 112 21 1188 3395 545258680 545256473 0.000000e+00 3269.0
13 TraesCS6D01G257200 chr6B 90.875 1326 79 16 3436 4755 545256252 545254963 0.000000e+00 1740.0
14 TraesCS6D01G257200 chr6B 93.173 498 26 3 668 1164 545259751 545259261 0.000000e+00 725.0
15 TraesCS6D01G257200 chr6B 90.500 400 30 7 4795 5192 545254872 545254479 6.820000e-144 521.0
16 TraesCS6D01G257200 chr6B 89.211 380 25 6 152 530 545262275 545261911 1.510000e-125 460.0
17 TraesCS6D01G257200 chr6B 92.188 256 19 1 5634 5889 545253676 545253422 1.570000e-95 361.0
18 TraesCS6D01G257200 chr6B 91.703 229 16 2 5473 5698 545253910 545253682 1.240000e-81 315.0
19 TraesCS6D01G257200 chr6B 88.649 185 17 1 5281 5461 545254261 545254077 7.750000e-54 222.0
20 TraesCS6D01G257200 chr6B 97.222 36 1 0 4759 4794 545254940 545254905 1.790000e-05 62.1
21 TraesCS6D01G257200 chr6B 100.000 30 0 0 1650 1679 545258154 545258125 8.320000e-04 56.5
22 TraesCS6D01G257200 chr2D 86.722 241 28 4 211 448 23118267 23118028 1.270000e-66 265.0
23 TraesCS6D01G257200 chr2D 82.838 303 41 9 212 511 598234726 598234432 1.640000e-65 261.0
24 TraesCS6D01G257200 chr2D 80.488 328 51 12 201 520 577331807 577332129 7.690000e-59 239.0
25 TraesCS6D01G257200 chr2D 77.465 426 63 22 5472 5877 544610997 544610585 2.150000e-54 224.0
26 TraesCS6D01G257200 chrUn 85.714 252 30 6 201 448 171718474 171718225 1.640000e-65 261.0
27 TraesCS6D01G257200 chrUn 88.333 60 7 0 461 520 219479307 219479366 8.260000e-09 73.1
28 TraesCS6D01G257200 chrUn 88.333 60 7 0 461 520 237797652 237797711 8.260000e-09 73.1
29 TraesCS6D01G257200 chrUn 88.333 60 7 0 461 520 362654244 362654185 8.260000e-09 73.1
30 TraesCS6D01G257200 chr1A 86.364 242 27 6 212 448 314437493 314437733 5.910000e-65 259.0
31 TraesCS6D01G257200 chr1A 84.733 131 14 6 669 795 53670564 53670436 6.250000e-25 126.0
32 TraesCS6D01G257200 chr1A 91.667 48 4 0 522 569 65266179 65266132 3.840000e-07 67.6
33 TraesCS6D01G257200 chr1D 85.597 243 27 8 211 447 423654358 423654118 1.280000e-61 248.0
34 TraesCS6D01G257200 chr1D 96.341 82 3 0 2 83 200951476 200951395 1.040000e-27 135.0
35 TraesCS6D01G257200 chr2A 78.856 402 51 25 5486 5873 686839729 686839348 2.140000e-59 241.0
36 TraesCS6D01G257200 chr2A 95.455 44 2 0 526 569 451817396 451817353 2.970000e-08 71.3
37 TraesCS6D01G257200 chr2B 76.886 411 63 21 5486 5877 650165053 650164656 2.810000e-48 204.0
38 TraesCS6D01G257200 chr4A 79.286 280 45 9 5606 5877 5552258 5552532 3.660000e-42 183.0
39 TraesCS6D01G257200 chr4A 90.000 60 6 0 461 520 457528121 457528062 1.770000e-10 78.7
40 TraesCS6D01G257200 chr4B 85.897 156 17 3 5723 5877 581069077 581068926 1.710000e-35 161.0
41 TraesCS6D01G257200 chr4D 90.083 121 9 1 5760 5877 464660666 464660546 2.870000e-33 154.0
42 TraesCS6D01G257200 chr4D 96.386 83 3 0 1 83 171906905 171906987 2.890000e-28 137.0
43 TraesCS6D01G257200 chr4D 96.386 83 3 0 1 83 247092911 247092993 2.890000e-28 137.0
44 TraesCS6D01G257200 chr3D 88.372 129 13 2 669 795 93614840 93614712 2.870000e-33 154.0
45 TraesCS6D01G257200 chr3D 96.386 83 3 0 1 83 341342162 341342080 2.890000e-28 137.0
46 TraesCS6D01G257200 chr7D 96.386 83 3 0 1 83 171704305 171704387 2.890000e-28 137.0
47 TraesCS6D01G257200 chr5D 96.386 83 3 0 1 83 93662719 93662801 2.890000e-28 137.0
48 TraesCS6D01G257200 chr5D 96.386 83 3 0 1 83 371507314 371507396 2.890000e-28 137.0
49 TraesCS6D01G257200 chr5D 90.000 60 6 0 461 520 455745673 455745732 1.770000e-10 78.7
50 TraesCS6D01G257200 chr5B 81.373 102 17 2 701 802 579808653 579808554 1.370000e-11 82.4
51 TraesCS6D01G257200 chr5B 88.889 54 6 0 516 569 492367526 492367579 3.840000e-07 67.6
52 TraesCS6D01G257200 chr7A 95.455 44 2 0 526 569 542968026 542967983 2.970000e-08 71.3
53 TraesCS6D01G257200 chr5A 95.455 44 2 0 526 569 673548437 673548394 2.970000e-08 71.3
54 TraesCS6D01G257200 chr3A 95.455 44 2 0 526 569 171543343 171543386 2.970000e-08 71.3
55 TraesCS6D01G257200 chr3A 90.385 52 4 1 519 569 698147199 698147148 3.840000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G257200 chr6D 363063825 363069764 5939 True 10970.00 10970 100.000000 1 5940 1 chr6D.!!$R2 5939
1 TraesCS6D01G257200 chr6A 503769190 503774728 5538 True 1281.00 4809 92.902333 150 5878 6 chr6A.!!$R3 5728
2 TraesCS6D01G257200 chr6B 545253422 545262275 8853 True 773.16 3269 92.695900 152 5889 10 chr6B.!!$R1 5737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 2710 0.251519 AACTACTCCCTTCGTCCCGT 60.252 55.000 0.00 0.00 0.00 5.28 F
1412 4097 0.455815 ATGAGTACGACTGCGCATCA 59.544 50.000 12.24 10.73 42.48 3.07 F
1632 4318 1.149288 TGGACCCTGAACCACTCTACT 59.851 52.381 0.00 0.00 0.00 2.57 F
1847 4553 2.046892 CGCTGGCCTGTGCTACTT 60.047 61.111 10.48 0.00 37.74 2.24 F
3037 5746 2.645838 TGGAGAAAGATAGGCATGCC 57.354 50.000 30.12 30.12 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 4967 0.461548 TAGCTGGTCGCATTCCTGAG 59.538 55.000 0.0 0.0 42.61 3.35 R
2454 5163 3.754965 TGAAGCAGCACCAAGAAATACT 58.245 40.909 0.0 0.0 0.00 2.12 R
3527 6441 4.040936 ACACTACATGGTTGGGCAATTA 57.959 40.909 0.0 0.0 0.00 1.40 R
3869 6784 2.851824 CACAGAACGGAAACAAGCAAAC 59.148 45.455 0.0 0.0 0.00 2.93 R
4975 7952 1.066430 TCAGTTGGTCGAAGGCATACC 60.066 52.381 0.0 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.356814 TCCATGAGGACTCGTGTGA 57.643 52.632 17.57 12.41 43.28 3.58
21 22 1.177401 CCATGAGGACTCGTGTGAGA 58.823 55.000 17.57 0.00 45.49 3.27
22 23 1.753649 CCATGAGGACTCGTGTGAGAT 59.246 52.381 17.57 0.00 45.49 2.75
23 24 2.480932 CCATGAGGACTCGTGTGAGATG 60.481 54.545 17.57 4.29 45.49 2.90
24 25 1.177401 TGAGGACTCGTGTGAGATGG 58.823 55.000 0.00 0.00 45.57 3.51
25 26 1.271926 TGAGGACTCGTGTGAGATGGA 60.272 52.381 0.00 0.00 45.57 3.41
26 27 1.819288 GAGGACTCGTGTGAGATGGAA 59.181 52.381 0.00 0.00 45.57 3.53
27 28 2.428890 GAGGACTCGTGTGAGATGGAAT 59.571 50.000 0.00 0.00 45.57 3.01
28 29 2.428890 AGGACTCGTGTGAGATGGAATC 59.571 50.000 0.00 0.00 45.57 2.52
40 41 3.747099 GATGGAATCCGCCGATAATTG 57.253 47.619 0.00 0.00 37.38 2.32
41 42 1.890876 TGGAATCCGCCGATAATTGG 58.109 50.000 0.00 0.00 0.00 3.16
42 43 1.418264 TGGAATCCGCCGATAATTGGA 59.582 47.619 0.00 0.00 34.45 3.53
43 44 2.039746 TGGAATCCGCCGATAATTGGAT 59.960 45.455 0.00 0.00 42.93 3.41
44 45 2.420022 GGAATCCGCCGATAATTGGATG 59.580 50.000 0.00 0.00 40.27 3.51
45 46 2.113860 ATCCGCCGATAATTGGATGG 57.886 50.000 0.00 0.00 39.69 3.51
46 47 1.052617 TCCGCCGATAATTGGATGGA 58.947 50.000 0.00 0.00 32.22 3.41
47 48 1.001974 TCCGCCGATAATTGGATGGAG 59.998 52.381 0.00 0.00 31.39 3.86
48 49 1.442769 CGCCGATAATTGGATGGAGG 58.557 55.000 0.00 0.00 0.00 4.30
49 50 1.001974 CGCCGATAATTGGATGGAGGA 59.998 52.381 0.00 0.00 0.00 3.71
50 51 2.427506 GCCGATAATTGGATGGAGGAC 58.572 52.381 0.00 0.00 0.00 3.85
51 52 2.876079 GCCGATAATTGGATGGAGGACC 60.876 54.545 0.00 0.00 0.00 4.46
60 61 3.005539 TGGAGGACCAGAGCTGCC 61.006 66.667 0.00 0.00 41.77 4.85
61 62 4.154347 GGAGGACCAGAGCTGCCG 62.154 72.222 0.00 0.00 35.97 5.69
62 63 3.071206 GAGGACCAGAGCTGCCGA 61.071 66.667 0.00 0.00 0.00 5.54
63 64 2.604686 AGGACCAGAGCTGCCGAA 60.605 61.111 0.00 0.00 0.00 4.30
64 65 2.435059 GGACCAGAGCTGCCGAAC 60.435 66.667 0.00 0.00 0.00 3.95
65 66 2.435059 GACCAGAGCTGCCGAACC 60.435 66.667 0.00 0.00 0.00 3.62
66 67 2.925170 ACCAGAGCTGCCGAACCT 60.925 61.111 0.00 0.00 0.00 3.50
67 68 2.125350 CCAGAGCTGCCGAACCTC 60.125 66.667 0.00 0.00 0.00 3.85
68 69 2.125350 CAGAGCTGCCGAACCTCC 60.125 66.667 0.00 0.00 0.00 4.30
69 70 3.764466 AGAGCTGCCGAACCTCCG 61.764 66.667 0.00 0.00 0.00 4.63
70 71 4.070552 GAGCTGCCGAACCTCCGT 62.071 66.667 0.00 0.00 0.00 4.69
71 72 4.379243 AGCTGCCGAACCTCCGTG 62.379 66.667 0.00 0.00 0.00 4.94
72 73 4.373116 GCTGCCGAACCTCCGTGA 62.373 66.667 0.00 0.00 0.00 4.35
73 74 2.432628 CTGCCGAACCTCCGTGAC 60.433 66.667 0.00 0.00 0.00 3.67
74 75 4.351938 TGCCGAACCTCCGTGACG 62.352 66.667 0.00 0.00 0.00 4.35
86 87 3.284197 CGTGACGGATATTGGGGAC 57.716 57.895 0.00 0.00 0.00 4.46
103 104 1.997669 GACCGCTTAGTCCAGACAAG 58.002 55.000 0.00 3.64 0.00 3.16
104 105 1.544691 GACCGCTTAGTCCAGACAAGA 59.455 52.381 11.63 0.00 0.00 3.02
105 106 1.272769 ACCGCTTAGTCCAGACAAGAC 59.727 52.381 11.63 0.00 34.31 3.01
106 107 1.618861 CGCTTAGTCCAGACAAGACG 58.381 55.000 11.63 10.52 39.31 4.18
107 108 1.068472 CGCTTAGTCCAGACAAGACGT 60.068 52.381 11.63 0.00 39.31 4.34
108 109 2.329379 GCTTAGTCCAGACAAGACGTG 58.671 52.381 0.00 0.00 39.31 4.49
109 110 2.288273 GCTTAGTCCAGACAAGACGTGT 60.288 50.000 0.00 0.00 45.74 4.49
110 111 3.309388 CTTAGTCCAGACAAGACGTGTG 58.691 50.000 0.00 0.00 41.96 3.82
113 114 3.234390 CAGACAAGACGTGTGGCG 58.766 61.111 0.00 0.00 41.96 5.69
114 115 2.029073 AGACAAGACGTGTGGCGG 59.971 61.111 0.00 0.00 46.52 6.13
122 123 4.457496 CGTGTGGCGGCTCTGGAT 62.457 66.667 11.43 0.00 36.85 3.41
123 124 2.900273 GTGTGGCGGCTCTGGATA 59.100 61.111 11.43 0.00 0.00 2.59
124 125 1.227380 GTGTGGCGGCTCTGGATAG 60.227 63.158 11.43 0.00 0.00 2.08
125 126 1.381191 TGTGGCGGCTCTGGATAGA 60.381 57.895 11.43 0.00 0.00 1.98
126 127 0.975556 TGTGGCGGCTCTGGATAGAA 60.976 55.000 11.43 0.00 31.21 2.10
127 128 0.530870 GTGGCGGCTCTGGATAGAAC 60.531 60.000 11.43 0.00 31.21 3.01
128 129 1.069935 GGCGGCTCTGGATAGAACC 59.930 63.158 0.00 0.00 36.11 3.62
133 134 3.372660 GGCTCTGGATAGAACCGTTAG 57.627 52.381 0.00 0.00 30.05 2.34
134 135 2.694109 GGCTCTGGATAGAACCGTTAGT 59.306 50.000 0.00 0.00 30.05 2.24
135 136 3.243468 GGCTCTGGATAGAACCGTTAGTC 60.243 52.174 0.00 0.00 30.05 2.59
136 137 3.243468 GCTCTGGATAGAACCGTTAGTCC 60.243 52.174 3.29 3.29 31.21 3.85
137 138 3.952323 CTCTGGATAGAACCGTTAGTCCA 59.048 47.826 9.94 9.94 34.77 4.02
138 139 4.308899 CTGGATAGAACCGTTAGTCCAG 57.691 50.000 17.74 17.74 44.54 3.86
139 140 3.028850 TGGATAGAACCGTTAGTCCAGG 58.971 50.000 7.36 0.00 32.38 4.45
140 141 3.294214 GGATAGAACCGTTAGTCCAGGA 58.706 50.000 0.00 0.00 0.00 3.86
141 142 3.067883 GGATAGAACCGTTAGTCCAGGAC 59.932 52.174 12.25 12.25 0.00 3.85
142 143 2.305858 AGAACCGTTAGTCCAGGACT 57.694 50.000 25.92 25.92 45.54 3.85
143 144 2.169330 AGAACCGTTAGTCCAGGACTC 58.831 52.381 26.42 11.71 42.40 3.36
144 145 1.204231 GAACCGTTAGTCCAGGACTCC 59.796 57.143 26.42 16.15 42.40 3.85
145 146 0.614134 ACCGTTAGTCCAGGACTCCC 60.614 60.000 26.42 15.79 42.40 4.30
146 147 0.324460 CCGTTAGTCCAGGACTCCCT 60.324 60.000 26.42 4.72 42.40 4.20
147 148 1.104630 CGTTAGTCCAGGACTCCCTC 58.895 60.000 26.42 13.04 42.40 4.30
148 149 1.616187 CGTTAGTCCAGGACTCCCTCA 60.616 57.143 26.42 5.02 42.40 3.86
376 381 7.465916 CGACACGAGGAATACAATGATGAAAAT 60.466 37.037 0.00 0.00 0.00 1.82
396 401 0.442699 GGTTCGAGATTTGGACGCAC 59.557 55.000 0.00 0.00 0.00 5.34
404 409 2.224784 AGATTTGGACGCACGGTTTAAC 59.775 45.455 0.00 0.00 0.00 2.01
472 477 3.686016 ACTTCCATATTGTCGCAACCTT 58.314 40.909 0.00 0.00 0.00 3.50
473 478 4.079253 ACTTCCATATTGTCGCAACCTTT 58.921 39.130 0.00 0.00 0.00 3.11
522 2642 7.120051 AGAGTGCTCCTTAGTTAGTGATTAGA 58.880 38.462 0.00 0.00 0.00 2.10
550 2670 6.833416 TGTTTAGGGCATATTTAGATGTGCTT 59.167 34.615 13.48 6.42 46.17 3.91
580 2700 9.555727 TTATTGCACATCTAATTAACTACTCCC 57.444 33.333 0.00 0.00 0.00 4.30
581 2701 6.808321 TGCACATCTAATTAACTACTCCCT 57.192 37.500 0.00 0.00 0.00 4.20
582 2702 7.195374 TGCACATCTAATTAACTACTCCCTT 57.805 36.000 0.00 0.00 0.00 3.95
583 2703 7.272978 TGCACATCTAATTAACTACTCCCTTC 58.727 38.462 0.00 0.00 0.00 3.46
584 2704 6.421202 GCACATCTAATTAACTACTCCCTTCG 59.579 42.308 0.00 0.00 0.00 3.79
585 2705 7.490000 CACATCTAATTAACTACTCCCTTCGT 58.510 38.462 0.00 0.00 0.00 3.85
586 2706 7.648510 CACATCTAATTAACTACTCCCTTCGTC 59.351 40.741 0.00 0.00 0.00 4.20
587 2707 6.705863 TCTAATTAACTACTCCCTTCGTCC 57.294 41.667 0.00 0.00 0.00 4.79
588 2708 4.750021 AATTAACTACTCCCTTCGTCCC 57.250 45.455 0.00 0.00 0.00 4.46
589 2709 1.755179 TAACTACTCCCTTCGTCCCG 58.245 55.000 0.00 0.00 0.00 5.14
590 2710 0.251519 AACTACTCCCTTCGTCCCGT 60.252 55.000 0.00 0.00 0.00 5.28
591 2711 0.620556 ACTACTCCCTTCGTCCCGTA 59.379 55.000 0.00 0.00 0.00 4.02
592 2712 1.004745 ACTACTCCCTTCGTCCCGTAA 59.995 52.381 0.00 0.00 0.00 3.18
593 2713 2.305009 CTACTCCCTTCGTCCCGTAAT 58.695 52.381 0.00 0.00 0.00 1.89
594 2714 0.822164 ACTCCCTTCGTCCCGTAATG 59.178 55.000 0.00 0.00 0.00 1.90
595 2715 0.822164 CTCCCTTCGTCCCGTAATGT 59.178 55.000 0.00 0.00 0.00 2.71
596 2716 2.026641 CTCCCTTCGTCCCGTAATGTA 58.973 52.381 0.00 0.00 0.00 2.29
597 2717 2.428171 CTCCCTTCGTCCCGTAATGTAA 59.572 50.000 0.00 0.00 0.00 2.41
598 2718 2.428171 TCCCTTCGTCCCGTAATGTAAG 59.572 50.000 0.00 0.00 0.00 2.34
599 2719 2.428171 CCCTTCGTCCCGTAATGTAAGA 59.572 50.000 0.00 0.00 0.00 2.10
600 2720 3.490419 CCCTTCGTCCCGTAATGTAAGAG 60.490 52.174 0.00 0.00 0.00 2.85
601 2721 3.129988 CCTTCGTCCCGTAATGTAAGAGT 59.870 47.826 0.00 0.00 0.00 3.24
602 2722 4.349501 CTTCGTCCCGTAATGTAAGAGTC 58.650 47.826 0.00 0.00 0.00 3.36
603 2723 3.346315 TCGTCCCGTAATGTAAGAGTCA 58.654 45.455 0.00 0.00 0.00 3.41
604 2724 3.758023 TCGTCCCGTAATGTAAGAGTCAA 59.242 43.478 0.00 0.00 0.00 3.18
605 2725 4.218200 TCGTCCCGTAATGTAAGAGTCAAA 59.782 41.667 0.00 0.00 0.00 2.69
606 2726 4.925054 CGTCCCGTAATGTAAGAGTCAAAA 59.075 41.667 0.00 0.00 0.00 2.44
607 2727 5.406175 CGTCCCGTAATGTAAGAGTCAAAAA 59.594 40.000 0.00 0.00 0.00 1.94
631 2751 9.979578 AAAAACATCTTACATGCTATCAACAAA 57.020 25.926 0.00 0.00 0.00 2.83
632 2752 9.979578 AAAACATCTTACATGCTATCAACAAAA 57.020 25.926 0.00 0.00 0.00 2.44
633 2753 9.979578 AAACATCTTACATGCTATCAACAAAAA 57.020 25.926 0.00 0.00 0.00 1.94
655 2775 5.622770 AAAAACATCTTACATCACGGGAC 57.377 39.130 0.00 0.00 0.00 4.46
712 2833 6.544038 AAAAGGTAATGAAAATGCTTGCAC 57.456 33.333 0.00 0.00 0.00 4.57
720 2841 4.619973 TGAAAATGCTTGCACGAATCTTT 58.380 34.783 0.00 0.00 0.00 2.52
722 2843 5.629020 TGAAAATGCTTGCACGAATCTTTAC 59.371 36.000 0.00 0.00 0.00 2.01
736 2857 7.960738 CACGAATCTTTACGTAAAATCAATGGT 59.039 33.333 20.47 10.45 40.76 3.55
748 2869 4.510167 AATCAATGGTAGAGGACTTGGG 57.490 45.455 0.00 0.00 0.00 4.12
765 2894 5.518865 ACTTGGGTGTGCAATATTTAGGAT 58.481 37.500 0.00 0.00 0.00 3.24
767 2896 7.297614 ACTTGGGTGTGCAATATTTAGGATAT 58.702 34.615 0.00 0.00 0.00 1.63
819 2948 2.546114 TTTCGAGAATTCCCCGGCCC 62.546 60.000 15.07 0.00 0.00 5.80
820 2949 3.480133 CGAGAATTCCCCGGCCCT 61.480 66.667 0.65 0.00 0.00 5.19
821 2950 2.193248 GAGAATTCCCCGGCCCTG 59.807 66.667 0.65 0.00 0.00 4.45
822 2951 2.614013 AGAATTCCCCGGCCCTGT 60.614 61.111 0.65 0.00 0.00 4.00
823 2952 2.440247 GAATTCCCCGGCCCTGTG 60.440 66.667 0.00 0.00 0.00 3.66
824 2953 3.264845 AATTCCCCGGCCCTGTGT 61.265 61.111 0.00 0.00 0.00 3.72
1088 3217 1.304509 GCTGAGGAGCAAGGCTTCAC 61.305 60.000 0.00 0.00 45.46 3.18
1227 3912 1.648720 GCGCAACTTGCAGACTGAA 59.351 52.632 14.10 0.00 45.36 3.02
1230 3915 0.657840 GCAACTTGCAGACTGAACGT 59.342 50.000 6.65 0.00 44.26 3.99
1324 4009 4.887071 ACTCTTTTCACCAATTGTGCTGTA 59.113 37.500 4.43 0.00 45.03 2.74
1412 4097 0.455815 ATGAGTACGACTGCGCATCA 59.544 50.000 12.24 10.73 42.48 3.07
1418 4103 2.163390 CGACTGCGCATCACCTCAG 61.163 63.158 12.24 0.00 0.00 3.35
1433 4118 2.177594 CTCAGTCTCACCAGCACCCC 62.178 65.000 0.00 0.00 0.00 4.95
1492 4177 2.267324 GGTGCTGCCTCTCCTGAC 59.733 66.667 0.00 0.00 0.00 3.51
1553 4239 2.937469 TGCTTGGCCAATAAATGTCG 57.063 45.000 20.85 5.61 0.00 4.35
1591 4277 2.942376 TCATGTGCAACGAAACTGTTCT 59.058 40.909 0.00 0.00 42.39 3.01
1632 4318 1.149288 TGGACCCTGAACCACTCTACT 59.851 52.381 0.00 0.00 0.00 2.57
1665 4351 9.065871 GCAAACTGTACAAATTTATCTGACATC 57.934 33.333 0.00 0.00 0.00 3.06
1847 4553 2.046892 CGCTGGCCTGTGCTACTT 60.047 61.111 10.48 0.00 37.74 2.24
1915 4621 3.356529 ACCATCTGGGATGAAGTTCAC 57.643 47.619 7.96 2.44 41.15 3.18
1921 4627 3.056536 TCTGGGATGAAGTTCACGAAGAG 60.057 47.826 7.96 1.43 0.00 2.85
2125 4834 5.394224 TTCGGGCGTGTATCATATATGAA 57.606 39.130 19.03 6.52 40.69 2.57
2128 4837 5.126384 TCGGGCGTGTATCATATATGAATCA 59.874 40.000 19.03 16.57 40.69 2.57
2233 4942 4.272748 GTCAGGCGTAAAGAGTGAAAACTT 59.727 41.667 0.00 0.00 0.00 2.66
2442 5151 4.833478 AGTGCCTCATCTGTTAGAACAT 57.167 40.909 0.00 0.00 38.41 2.71
2454 5163 6.227522 TCTGTTAGAACATCATTTTCGGTGA 58.772 36.000 0.00 0.00 38.41 4.02
2506 5215 5.125739 GGAGTTCTTAGACAACAGCTAGCTA 59.874 44.000 18.86 0.00 0.00 3.32
2689 5398 4.437390 GGATGAAGCGGAAGTATGTTGTTG 60.437 45.833 0.00 0.00 0.00 3.33
3037 5746 2.645838 TGGAGAAAGATAGGCATGCC 57.354 50.000 30.12 30.12 0.00 4.40
3098 5807 5.153950 AGGTAGTCCTCTTAGTTTTGCTG 57.846 43.478 0.00 0.00 40.58 4.41
3228 5958 4.870636 TCCTATTGCCAGGTGATTCAAAT 58.129 39.130 0.00 0.00 36.99 2.32
3336 6066 9.604626 GTCTGTGTTTCATCTTTATCTTTCAAG 57.395 33.333 0.00 0.00 0.00 3.02
3434 6347 8.382130 AGTAATAATTGTTGCGCATGAAAAATG 58.618 29.630 12.75 0.00 0.00 2.32
3648 6562 5.486419 TCCTTTACTGGGGGTAAGTTCTAAG 59.514 44.000 0.00 0.00 40.87 2.18
3667 6581 7.916914 TCTAAGAAACCAAACCTTATGCTAC 57.083 36.000 0.00 0.00 0.00 3.58
3869 6784 9.926751 CTTCTTGCAGTACATGTCTATATTTTG 57.073 33.333 0.00 0.00 0.00 2.44
3894 6809 2.354821 GCTTGTTTCCGTTCTGTGAACT 59.645 45.455 8.51 0.00 0.00 3.01
3915 6831 3.963665 TCATTTTGTGTTTCAAGAGGCG 58.036 40.909 0.00 0.00 37.35 5.52
3984 6905 9.132923 TCAGTAGAACGGAGATACTTATTTCAT 57.867 33.333 0.00 0.00 0.00 2.57
4085 7006 1.073284 ACCAACCCATTACGAAGCAGT 59.927 47.619 0.00 0.00 0.00 4.40
4113 7034 6.255020 CCATGCTTCAGAATTTTTGCAGTATC 59.745 38.462 1.10 0.00 33.87 2.24
4124 7045 5.545658 TTTTGCAGTATCCAATCTTCGTC 57.454 39.130 0.00 0.00 0.00 4.20
4340 7262 7.147320 ACAAGGGGATTAATGTCTCACATATCA 60.147 37.037 0.00 0.00 37.97 2.15
4362 7284 4.274459 CAGTGCTTGTAGCTCTTGTTTTCT 59.726 41.667 0.00 0.00 41.75 2.52
4363 7285 4.513318 AGTGCTTGTAGCTCTTGTTTTCTC 59.487 41.667 0.00 0.00 41.75 2.87
4364 7286 3.494626 TGCTTGTAGCTCTTGTTTTCTCG 59.505 43.478 0.00 0.00 42.97 4.04
4366 7288 4.307432 CTTGTAGCTCTTGTTTTCTCGGA 58.693 43.478 0.00 0.00 0.00 4.55
4370 7292 4.553756 AGCTCTTGTTTTCTCGGAAAAC 57.446 40.909 23.83 23.83 39.78 2.43
4372 7294 4.580580 AGCTCTTGTTTTCTCGGAAAACAT 59.419 37.500 29.07 18.93 45.87 2.71
4374 7296 6.073003 AGCTCTTGTTTTCTCGGAAAACATAG 60.073 38.462 29.07 27.42 45.87 2.23
4375 7297 6.554334 TCTTGTTTTCTCGGAAAACATAGG 57.446 37.500 29.07 23.61 45.87 2.57
4376 7298 6.292923 TCTTGTTTTCTCGGAAAACATAGGA 58.707 36.000 29.07 24.67 45.87 2.94
4377 7299 6.768861 TCTTGTTTTCTCGGAAAACATAGGAA 59.231 34.615 29.07 19.66 45.87 3.36
4407 7332 1.557099 ACAGCTAGGTCATCGTGGAA 58.443 50.000 0.00 0.00 0.00 3.53
4444 7369 2.214376 TTCATGCTTTCGGATGGGTT 57.786 45.000 0.00 0.00 39.23 4.11
4453 7378 2.871096 TCGGATGGGTTTAAGCAACT 57.129 45.000 0.00 0.00 35.46 3.16
4597 7522 5.180117 TCGAGATCCTTCTTTTCTGCAAAAG 59.820 40.000 4.75 4.75 46.99 2.27
4598 7523 5.618640 CGAGATCCTTCTTTTCTGCAAAAGG 60.619 44.000 10.27 6.28 46.03 3.11
4675 7601 5.461032 AGTTTGAGAACTCTAGACACTGG 57.539 43.478 3.51 0.00 42.35 4.00
4676 7602 4.896482 AGTTTGAGAACTCTAGACACTGGT 59.104 41.667 3.51 0.00 42.35 4.00
4677 7603 4.855715 TTGAGAACTCTAGACACTGGTG 57.144 45.455 3.51 0.00 0.00 4.17
4678 7604 5.452077 GTTTGAGAACTCTAGACACTGGTGT 60.452 44.000 6.04 6.04 38.43 4.16
4679 7605 4.981812 TGAGAACTCTAGACACTGGTGTA 58.018 43.478 6.35 0.00 45.05 2.90
4680 7606 5.571285 TGAGAACTCTAGACACTGGTGTAT 58.429 41.667 6.35 6.31 45.05 2.29
4681 7607 5.648526 TGAGAACTCTAGACACTGGTGTATC 59.351 44.000 6.35 0.00 45.05 2.24
4682 7608 4.951094 AGAACTCTAGACACTGGTGTATCC 59.049 45.833 6.35 0.00 45.05 2.59
4710 7636 5.188988 TGTACTGGGTAGAGTATGTGTCT 57.811 43.478 0.00 0.00 31.14 3.41
4906 7883 5.236263 TGTCCAGCACTACAAATATTATGCG 59.764 40.000 0.00 0.00 38.12 4.73
4907 7884 5.236478 GTCCAGCACTACAAATATTATGCGT 59.764 40.000 0.00 0.00 38.12 5.24
4908 7885 6.422701 GTCCAGCACTACAAATATTATGCGTA 59.577 38.462 0.00 0.00 38.12 4.42
4930 7907 7.850982 GCGTAGGAAATATATGTTTCTTGTGTG 59.149 37.037 20.26 9.89 38.02 3.82
4939 7916 4.647424 TGTTTCTTGTGTGTGATTTCCC 57.353 40.909 0.00 0.00 0.00 3.97
4967 7944 7.609532 CCTGAATTTCCTTGTTCTCTAAGACAT 59.390 37.037 0.00 0.00 0.00 3.06
4975 7952 6.090088 CCTTGTTCTCTAAGACATCTTTCACG 59.910 42.308 0.00 0.00 37.40 4.35
4979 7956 7.093902 TGTTCTCTAAGACATCTTTCACGGTAT 60.094 37.037 0.00 0.00 37.40 2.73
4982 7959 2.906354 AGACATCTTTCACGGTATGCC 58.094 47.619 0.00 0.00 0.00 4.40
5046 8023 5.612709 GTGTAACAGAACTTGCTTAAGAGCG 60.613 44.000 6.67 0.00 44.75 5.03
5071 8048 1.890876 TTGGTTTGCGATGCTGTAGT 58.109 45.000 0.00 0.00 0.00 2.73
5075 8052 3.815962 TGGTTTGCGATGCTGTAGTTTTA 59.184 39.130 0.00 0.00 0.00 1.52
5097 8074 3.939740 AGAGATGGGCAGAAATTAGCA 57.060 42.857 0.00 0.00 0.00 3.49
5113 8090 8.260818 AGAAATTAGCAGTGCAATAAGAGAGTA 58.739 33.333 19.20 0.00 0.00 2.59
5119 8096 6.322456 AGCAGTGCAATAAGAGAGTATGAGTA 59.678 38.462 19.20 0.00 0.00 2.59
5137 8114 4.058124 GAGTACCAAGCGAATCATGCATA 58.942 43.478 0.00 0.00 33.85 3.14
5159 8136 4.339872 TTTCATGCATTGCCTTTCTGTT 57.660 36.364 6.12 0.00 0.00 3.16
5174 8151 5.123344 CCTTTCTGTTACCGGTCCAAATTAG 59.877 44.000 12.40 3.47 0.00 1.73
5179 8156 2.693267 ACCGGTCCAAATTAGAGAGC 57.307 50.000 0.00 0.00 0.00 4.09
5210 8187 5.174037 TCGGTTAAAAGGATCAATCACCT 57.826 39.130 0.00 0.00 38.23 4.00
5212 8189 4.096382 CGGTTAAAAGGATCAATCACCTGG 59.904 45.833 0.00 0.00 36.56 4.45
5219 8196 2.356535 GGATCAATCACCTGGCTGTCTT 60.357 50.000 0.00 0.00 0.00 3.01
5232 8210 6.183360 ACCTGGCTGTCTTAGAAAAAGAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
5249 8227 1.244019 AACGCTCCCAGGCAAATGTC 61.244 55.000 0.00 0.00 0.00 3.06
5260 8238 5.352569 CCCAGGCAAATGTCGAATATATCTC 59.647 44.000 0.00 0.00 0.00 2.75
5265 8243 5.668866 GCAAATGTCGAATATATCTCGTGCC 60.669 44.000 13.36 7.02 37.56 5.01
5266 8244 5.392767 AATGTCGAATATATCTCGTGCCT 57.607 39.130 13.36 3.83 37.56 4.75
5268 8246 3.190744 TGTCGAATATATCTCGTGCCTCC 59.809 47.826 13.36 0.00 37.56 4.30
5269 8247 3.440872 GTCGAATATATCTCGTGCCTCCT 59.559 47.826 13.36 0.00 37.56 3.69
5309 8435 2.369600 CACGCATGCAAGATCGAATTC 58.630 47.619 19.57 0.00 0.00 2.17
5317 8443 3.857665 TGCAAGATCGAATTCACGAGTAC 59.142 43.478 6.22 0.00 45.22 2.73
5341 8467 1.816679 GGCCCCGGACGTTGAATAC 60.817 63.158 0.73 0.00 0.00 1.89
5362 8492 9.209175 GAATACATATATCTTGTGAACTCCCAC 57.791 37.037 2.31 0.00 37.55 4.61
5400 8530 3.243367 ACATACACAAATGTTTGCGCTGT 60.243 39.130 9.73 3.38 40.35 4.40
5433 8563 1.676746 AATGCTGCTGTCTATGGCTG 58.323 50.000 0.00 0.00 0.00 4.85
5445 8575 1.133790 CTATGGCTGCAAAGGCTGAAC 59.866 52.381 0.50 0.00 41.06 3.18
5455 8585 3.798889 GCAAAGGCTGAACTTTAACACCC 60.799 47.826 0.00 0.00 38.56 4.61
5467 8597 4.652421 ACTTTAACACCCAGACTCTGTGTA 59.348 41.667 5.32 0.00 42.08 2.90
5468 8598 5.307196 ACTTTAACACCCAGACTCTGTGTAT 59.693 40.000 5.32 0.00 42.08 2.29
5469 8599 5.818678 TTAACACCCAGACTCTGTGTATT 57.181 39.130 5.32 0.00 42.08 1.89
5471 8601 5.818678 AACACCCAGACTCTGTGTATTTA 57.181 39.130 5.32 0.00 42.08 1.40
5596 8881 2.513204 CAGCTCATCCAGGCACGG 60.513 66.667 0.00 0.00 0.00 4.94
5886 9270 1.135315 CGCCATTCTTGTTGTCCATGG 60.135 52.381 4.97 4.97 37.96 3.66
5889 9273 2.231964 CCATTCTTGTTGTCCATGGGTG 59.768 50.000 13.02 0.00 32.18 4.61
5890 9274 3.156293 CATTCTTGTTGTCCATGGGTGA 58.844 45.455 13.02 0.00 0.00 4.02
5891 9275 3.524095 TTCTTGTTGTCCATGGGTGAT 57.476 42.857 13.02 0.00 0.00 3.06
5892 9276 3.071874 TCTTGTTGTCCATGGGTGATC 57.928 47.619 13.02 0.05 0.00 2.92
5893 9277 1.739466 CTTGTTGTCCATGGGTGATCG 59.261 52.381 13.02 0.00 0.00 3.69
5894 9278 0.980423 TGTTGTCCATGGGTGATCGA 59.020 50.000 13.02 0.00 0.00 3.59
5895 9279 1.559219 TGTTGTCCATGGGTGATCGAT 59.441 47.619 13.02 0.00 0.00 3.59
5896 9280 2.213499 GTTGTCCATGGGTGATCGATC 58.787 52.381 18.72 18.72 0.00 3.69
5897 9281 0.389025 TGTCCATGGGTGATCGATCG 59.611 55.000 20.03 9.36 0.00 3.69
5898 9282 0.673985 GTCCATGGGTGATCGATCGA 59.326 55.000 21.86 21.86 0.00 3.59
5899 9283 0.961753 TCCATGGGTGATCGATCGAG 59.038 55.000 23.84 6.85 0.00 4.04
5900 9284 0.668706 CCATGGGTGATCGATCGAGC 60.669 60.000 25.65 25.65 0.00 5.03
5901 9285 1.005804 CATGGGTGATCGATCGAGCG 61.006 60.000 26.34 18.51 32.52 5.03
5902 9286 2.731348 GGGTGATCGATCGAGCGC 60.731 66.667 32.54 32.54 39.92 5.92
5903 9287 3.094058 GGTGATCGATCGAGCGCG 61.094 66.667 32.67 2.41 41.34 6.86
5904 9288 3.094058 GTGATCGATCGAGCGCGG 61.094 66.667 28.29 0.00 38.28 6.46
5905 9289 4.328231 TGATCGATCGAGCGCGGG 62.328 66.667 26.34 0.00 38.28 6.13
5932 9316 4.572571 TGGCGCCTTTGGTCGGTT 62.573 61.111 29.70 0.00 0.00 4.44
5933 9317 3.292159 GGCGCCTTTGGTCGGTTT 61.292 61.111 22.15 0.00 0.00 3.27
5934 9318 2.725641 GCGCCTTTGGTCGGTTTT 59.274 55.556 0.00 0.00 0.00 2.43
5935 9319 1.371267 GCGCCTTTGGTCGGTTTTC 60.371 57.895 0.00 0.00 0.00 2.29
5936 9320 1.792118 GCGCCTTTGGTCGGTTTTCT 61.792 55.000 0.00 0.00 0.00 2.52
5937 9321 0.237498 CGCCTTTGGTCGGTTTTCTC 59.763 55.000 0.00 0.00 0.00 2.87
5938 9322 0.237498 GCCTTTGGTCGGTTTTCTCG 59.763 55.000 0.00 0.00 0.00 4.04
5939 9323 1.873698 CCTTTGGTCGGTTTTCTCGA 58.126 50.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.177401 CTCACACGAGTCCTCATGGA 58.823 55.000 0.00 0.00 40.69 3.41
2 3 1.177401 TCTCACACGAGTCCTCATGG 58.823 55.000 0.00 0.00 40.44 3.66
3 4 2.480932 CCATCTCACACGAGTCCTCATG 60.481 54.545 0.00 0.00 40.44 3.07
4 5 1.753649 CCATCTCACACGAGTCCTCAT 59.246 52.381 0.00 0.00 40.44 2.90
5 6 1.177401 CCATCTCACACGAGTCCTCA 58.823 55.000 0.00 0.00 40.44 3.86
6 7 1.464734 TCCATCTCACACGAGTCCTC 58.535 55.000 0.00 0.00 40.44 3.71
7 8 1.924731 TTCCATCTCACACGAGTCCT 58.075 50.000 0.00 0.00 40.44 3.85
8 9 2.482142 GGATTCCATCTCACACGAGTCC 60.482 54.545 0.00 0.00 40.44 3.85
9 10 2.796383 CGGATTCCATCTCACACGAGTC 60.796 54.545 3.09 0.00 40.44 3.36
10 11 1.135139 CGGATTCCATCTCACACGAGT 59.865 52.381 3.09 0.00 40.44 4.18
11 12 1.845266 CGGATTCCATCTCACACGAG 58.155 55.000 3.09 0.00 40.98 4.18
12 13 0.179111 GCGGATTCCATCTCACACGA 60.179 55.000 3.09 0.00 0.00 4.35
13 14 1.154205 GGCGGATTCCATCTCACACG 61.154 60.000 3.09 0.00 0.00 4.49
14 15 1.154205 CGGCGGATTCCATCTCACAC 61.154 60.000 0.00 0.00 0.00 3.82
15 16 1.143838 CGGCGGATTCCATCTCACA 59.856 57.895 0.00 0.00 0.00 3.58
16 17 0.034059 ATCGGCGGATTCCATCTCAC 59.966 55.000 7.21 0.00 0.00 3.51
17 18 1.627864 TATCGGCGGATTCCATCTCA 58.372 50.000 12.41 0.00 34.00 3.27
18 19 2.743636 TTATCGGCGGATTCCATCTC 57.256 50.000 12.41 0.00 34.00 2.75
19 20 3.338249 CAATTATCGGCGGATTCCATCT 58.662 45.455 12.41 0.00 34.00 2.90
20 21 2.420022 CCAATTATCGGCGGATTCCATC 59.580 50.000 12.41 0.00 34.00 3.51
21 22 2.039746 TCCAATTATCGGCGGATTCCAT 59.960 45.455 12.41 0.36 34.00 3.41
22 23 1.418264 TCCAATTATCGGCGGATTCCA 59.582 47.619 12.41 0.00 34.00 3.53
23 24 2.178912 TCCAATTATCGGCGGATTCC 57.821 50.000 12.41 0.00 34.00 3.01
24 25 2.420022 CCATCCAATTATCGGCGGATTC 59.580 50.000 12.41 0.00 36.07 2.52
25 26 2.039746 TCCATCCAATTATCGGCGGATT 59.960 45.455 12.41 2.53 36.07 3.01
26 27 1.628340 TCCATCCAATTATCGGCGGAT 59.372 47.619 7.21 11.83 38.84 4.18
27 28 1.001974 CTCCATCCAATTATCGGCGGA 59.998 52.381 7.21 0.00 0.00 5.54
28 29 1.442769 CTCCATCCAATTATCGGCGG 58.557 55.000 7.21 0.00 0.00 6.13
29 30 1.001974 TCCTCCATCCAATTATCGGCG 59.998 52.381 0.00 0.00 0.00 6.46
30 31 2.427506 GTCCTCCATCCAATTATCGGC 58.572 52.381 0.00 0.00 0.00 5.54
31 32 2.371841 TGGTCCTCCATCCAATTATCGG 59.628 50.000 0.00 0.00 39.03 4.18
32 33 3.324846 TCTGGTCCTCCATCCAATTATCG 59.675 47.826 0.00 0.00 43.43 2.92
33 34 4.805609 GCTCTGGTCCTCCATCCAATTATC 60.806 50.000 0.00 0.00 43.43 1.75
34 35 3.073650 GCTCTGGTCCTCCATCCAATTAT 59.926 47.826 0.00 0.00 43.43 1.28
35 36 2.439507 GCTCTGGTCCTCCATCCAATTA 59.560 50.000 0.00 0.00 43.43 1.40
36 37 1.213926 GCTCTGGTCCTCCATCCAATT 59.786 52.381 0.00 0.00 43.43 2.32
37 38 0.842635 GCTCTGGTCCTCCATCCAAT 59.157 55.000 0.00 0.00 43.43 3.16
38 39 0.252881 AGCTCTGGTCCTCCATCCAA 60.253 55.000 0.00 0.00 43.43 3.53
39 40 0.979709 CAGCTCTGGTCCTCCATCCA 60.980 60.000 0.00 0.00 43.43 3.41
40 41 1.828768 CAGCTCTGGTCCTCCATCC 59.171 63.158 0.00 0.00 43.43 3.51
41 42 1.145819 GCAGCTCTGGTCCTCCATC 59.854 63.158 0.00 0.00 43.43 3.51
42 43 2.373707 GGCAGCTCTGGTCCTCCAT 61.374 63.158 0.00 0.00 43.43 3.41
43 44 3.005539 GGCAGCTCTGGTCCTCCA 61.006 66.667 0.00 0.00 42.05 3.86
44 45 4.154347 CGGCAGCTCTGGTCCTCC 62.154 72.222 0.00 0.00 0.00 4.30
45 46 2.650116 TTCGGCAGCTCTGGTCCTC 61.650 63.158 0.00 0.00 0.00 3.71
46 47 2.604686 TTCGGCAGCTCTGGTCCT 60.605 61.111 0.00 0.00 0.00 3.85
47 48 2.435059 GTTCGGCAGCTCTGGTCC 60.435 66.667 0.00 0.00 0.00 4.46
48 49 2.435059 GGTTCGGCAGCTCTGGTC 60.435 66.667 0.00 0.00 0.00 4.02
49 50 2.925170 AGGTTCGGCAGCTCTGGT 60.925 61.111 0.00 0.00 0.00 4.00
50 51 2.125350 GAGGTTCGGCAGCTCTGG 60.125 66.667 0.00 0.00 45.33 3.86
54 55 4.379243 CACGGAGGTTCGGCAGCT 62.379 66.667 0.00 0.00 35.23 4.24
55 56 4.373116 TCACGGAGGTTCGGCAGC 62.373 66.667 0.00 0.00 0.00 5.25
56 57 2.432628 GTCACGGAGGTTCGGCAG 60.433 66.667 0.00 0.00 0.00 4.85
57 58 4.351938 CGTCACGGAGGTTCGGCA 62.352 66.667 0.00 0.00 0.00 5.69
68 69 0.249741 GGTCCCCAATATCCGTCACG 60.250 60.000 0.00 0.00 0.00 4.35
69 70 0.249741 CGGTCCCCAATATCCGTCAC 60.250 60.000 0.00 0.00 38.45 3.67
70 71 2.035237 GCGGTCCCCAATATCCGTCA 62.035 60.000 0.00 0.00 44.07 4.35
71 72 1.301479 GCGGTCCCCAATATCCGTC 60.301 63.158 0.00 0.00 44.07 4.79
72 73 1.342672 AAGCGGTCCCCAATATCCGT 61.343 55.000 0.00 0.00 44.07 4.69
73 74 0.682852 TAAGCGGTCCCCAATATCCG 59.317 55.000 0.00 0.00 44.86 4.18
74 75 1.697982 ACTAAGCGGTCCCCAATATCC 59.302 52.381 0.00 0.00 0.00 2.59
75 76 3.041508 GACTAAGCGGTCCCCAATATC 57.958 52.381 0.00 0.00 0.00 1.63
84 85 1.544691 TCTTGTCTGGACTAAGCGGTC 59.455 52.381 2.38 0.11 35.66 4.79
85 86 1.272769 GTCTTGTCTGGACTAAGCGGT 59.727 52.381 2.38 0.00 0.00 5.68
86 87 1.732732 CGTCTTGTCTGGACTAAGCGG 60.733 57.143 2.38 0.00 0.00 5.52
87 88 1.068472 ACGTCTTGTCTGGACTAAGCG 60.068 52.381 2.38 12.03 32.72 4.68
88 89 2.288273 ACACGTCTTGTCTGGACTAAGC 60.288 50.000 2.38 0.00 29.79 3.09
89 90 3.309388 CACACGTCTTGTCTGGACTAAG 58.691 50.000 2.38 4.92 35.67 2.18
90 91 2.035449 CCACACGTCTTGTCTGGACTAA 59.965 50.000 2.38 0.00 38.83 2.24
91 92 1.611977 CCACACGTCTTGTCTGGACTA 59.388 52.381 2.38 0.00 38.83 2.59
92 93 0.389391 CCACACGTCTTGTCTGGACT 59.611 55.000 2.38 0.00 38.83 3.85
93 94 1.222115 GCCACACGTCTTGTCTGGAC 61.222 60.000 0.00 0.00 38.83 4.02
94 95 1.069090 GCCACACGTCTTGTCTGGA 59.931 57.895 0.00 0.00 38.83 3.86
95 96 2.310233 CGCCACACGTCTTGTCTGG 61.310 63.158 0.00 0.00 39.47 3.86
96 97 2.310233 CCGCCACACGTCTTGTCTG 61.310 63.158 0.00 0.00 41.42 3.51
97 98 2.029073 CCGCCACACGTCTTGTCT 59.971 61.111 0.00 0.00 41.42 3.41
98 99 3.712881 GCCGCCACACGTCTTGTC 61.713 66.667 0.00 0.00 41.42 3.18
99 100 4.235762 AGCCGCCACACGTCTTGT 62.236 61.111 0.00 0.00 41.42 3.16
100 101 3.414700 GAGCCGCCACACGTCTTG 61.415 66.667 0.00 0.00 41.42 3.02
101 102 3.616721 AGAGCCGCCACACGTCTT 61.617 61.111 0.00 0.00 41.42 3.01
102 103 4.363990 CAGAGCCGCCACACGTCT 62.364 66.667 0.00 0.00 41.42 4.18
105 106 2.960957 CTATCCAGAGCCGCCACACG 62.961 65.000 0.00 0.00 43.15 4.49
106 107 1.227380 CTATCCAGAGCCGCCACAC 60.227 63.158 0.00 0.00 0.00 3.82
107 108 0.975556 TTCTATCCAGAGCCGCCACA 60.976 55.000 0.00 0.00 30.73 4.17
108 109 0.530870 GTTCTATCCAGAGCCGCCAC 60.531 60.000 0.00 0.00 30.73 5.01
109 110 1.686325 GGTTCTATCCAGAGCCGCCA 61.686 60.000 0.00 0.00 41.66 5.69
110 111 1.069935 GGTTCTATCCAGAGCCGCC 59.930 63.158 0.00 0.00 41.66 6.13
111 112 4.760757 GGTTCTATCCAGAGCCGC 57.239 61.111 0.00 0.00 41.66 6.53
113 114 2.694109 ACTAACGGTTCTATCCAGAGCC 59.306 50.000 0.00 0.00 46.05 4.70
114 115 3.243468 GGACTAACGGTTCTATCCAGAGC 60.243 52.174 0.00 0.00 30.73 4.09
115 116 3.952323 TGGACTAACGGTTCTATCCAGAG 59.048 47.826 13.65 0.39 32.50 3.35
116 117 3.972133 TGGACTAACGGTTCTATCCAGA 58.028 45.455 13.65 0.00 32.50 3.86
117 118 4.308899 CTGGACTAACGGTTCTATCCAG 57.691 50.000 22.89 22.89 45.28 3.86
118 119 3.028850 CCTGGACTAACGGTTCTATCCA 58.971 50.000 15.71 15.71 35.04 3.41
119 120 3.067883 GTCCTGGACTAACGGTTCTATCC 59.932 52.174 19.53 3.94 0.00 2.59
120 121 3.952967 AGTCCTGGACTAACGGTTCTATC 59.047 47.826 27.37 0.00 41.51 2.08
121 122 3.952967 GAGTCCTGGACTAACGGTTCTAT 59.047 47.826 28.41 2.82 43.53 1.98
122 123 3.350833 GAGTCCTGGACTAACGGTTCTA 58.649 50.000 28.41 0.00 43.53 2.10
123 124 2.169330 GAGTCCTGGACTAACGGTTCT 58.831 52.381 28.41 4.16 43.53 3.01
124 125 1.204231 GGAGTCCTGGACTAACGGTTC 59.796 57.143 28.41 14.40 43.53 3.62
125 126 1.264295 GGAGTCCTGGACTAACGGTT 58.736 55.000 28.41 5.74 43.53 4.44
126 127 0.614134 GGGAGTCCTGGACTAACGGT 60.614 60.000 28.41 6.53 43.53 4.83
127 128 0.324460 AGGGAGTCCTGGACTAACGG 60.324 60.000 28.41 0.00 43.53 4.44
128 129 1.104630 GAGGGAGTCCTGGACTAACG 58.895 60.000 28.41 0.00 43.53 3.18
129 130 2.233305 TGAGGGAGTCCTGGACTAAC 57.767 55.000 28.41 22.47 43.53 2.34
130 131 3.107601 CATTGAGGGAGTCCTGGACTAA 58.892 50.000 28.41 18.69 43.53 2.24
131 132 2.314852 TCATTGAGGGAGTCCTGGACTA 59.685 50.000 28.41 12.97 43.53 2.59
132 133 1.079490 TCATTGAGGGAGTCCTGGACT 59.921 52.381 28.70 28.70 46.42 3.85
133 134 1.484240 CTCATTGAGGGAGTCCTGGAC 59.516 57.143 19.20 19.20 45.05 4.02
134 135 1.623557 CCTCATTGAGGGAGTCCTGGA 60.624 57.143 22.92 0.00 45.43 3.86
135 136 0.835941 CCTCATTGAGGGAGTCCTGG 59.164 60.000 22.92 0.00 45.43 4.45
145 146 1.912043 ACTTGGGAGGACCTCATTGAG 59.088 52.381 23.06 15.62 41.11 3.02
146 147 2.044793 ACTTGGGAGGACCTCATTGA 57.955 50.000 23.06 5.05 41.11 2.57
147 148 4.202441 CAATACTTGGGAGGACCTCATTG 58.798 47.826 23.06 17.20 41.11 2.82
148 149 3.852578 ACAATACTTGGGAGGACCTCATT 59.147 43.478 23.06 9.89 41.11 2.57
326 331 7.039993 TCGAGATCGTCAAAATTAGATCCCATA 60.040 37.037 1.70 0.00 40.06 2.74
330 335 5.977725 TGTCGAGATCGTCAAAATTAGATCC 59.022 40.000 1.70 0.00 40.06 3.36
337 342 3.211803 TCGTGTCGAGATCGTCAAAAT 57.788 42.857 3.84 0.00 38.89 1.82
376 381 0.034198 TGCGTCCAAATCTCGAACCA 59.966 50.000 0.00 0.00 0.00 3.67
447 452 5.010617 AGGTTGCGACAATATGGAAGTTTTT 59.989 36.000 6.39 0.00 0.00 1.94
448 453 4.522789 AGGTTGCGACAATATGGAAGTTTT 59.477 37.500 6.39 0.00 0.00 2.43
458 463 4.261405 CCACTTTCAAAGGTTGCGACAATA 60.261 41.667 6.39 0.00 0.00 1.90
472 477 3.287222 CAAAGGTCACTCCCACTTTCAA 58.713 45.455 0.00 0.00 36.75 2.69
473 478 2.930950 CAAAGGTCACTCCCACTTTCA 58.069 47.619 0.00 0.00 36.75 2.69
510 515 7.272978 TGCCCTAAACAGATCTAATCACTAAC 58.727 38.462 0.00 0.00 0.00 2.34
522 2642 7.175641 GCACATCTAAATATGCCCTAAACAGAT 59.824 37.037 0.00 0.00 31.71 2.90
584 2704 6.790285 TTTTTGACTCTTACATTACGGGAC 57.210 37.500 0.00 0.00 0.00 4.46
605 2725 9.979578 TTTGTTGATAGCATGTAAGATGTTTTT 57.020 25.926 0.00 0.00 0.00 1.94
606 2726 9.979578 TTTTGTTGATAGCATGTAAGATGTTTT 57.020 25.926 0.00 0.00 0.00 2.43
607 2727 9.979578 TTTTTGTTGATAGCATGTAAGATGTTT 57.020 25.926 0.00 0.00 0.00 2.83
633 2753 4.153475 CGTCCCGTGATGTAAGATGTTTTT 59.847 41.667 0.00 0.00 0.00 1.94
634 2754 3.682858 CGTCCCGTGATGTAAGATGTTTT 59.317 43.478 0.00 0.00 0.00 2.43
635 2755 3.259064 CGTCCCGTGATGTAAGATGTTT 58.741 45.455 0.00 0.00 0.00 2.83
636 2756 2.418197 CCGTCCCGTGATGTAAGATGTT 60.418 50.000 0.00 0.00 0.00 2.71
637 2757 1.136305 CCGTCCCGTGATGTAAGATGT 59.864 52.381 0.00 0.00 0.00 3.06
638 2758 1.407618 TCCGTCCCGTGATGTAAGATG 59.592 52.381 0.00 0.00 0.00 2.90
639 2759 1.681793 CTCCGTCCCGTGATGTAAGAT 59.318 52.381 0.00 0.00 0.00 2.40
640 2760 1.100510 CTCCGTCCCGTGATGTAAGA 58.899 55.000 0.00 0.00 0.00 2.10
641 2761 0.102481 CCTCCGTCCCGTGATGTAAG 59.898 60.000 0.00 0.00 0.00 2.34
642 2762 1.324740 CCCTCCGTCCCGTGATGTAA 61.325 60.000 0.00 0.00 0.00 2.41
643 2763 1.755395 CCCTCCGTCCCGTGATGTA 60.755 63.158 0.00 0.00 0.00 2.29
644 2764 3.075005 CCCTCCGTCCCGTGATGT 61.075 66.667 0.00 0.00 0.00 3.06
645 2765 2.758327 TCCCTCCGTCCCGTGATG 60.758 66.667 0.00 0.00 0.00 3.07
646 2766 1.929860 TACTCCCTCCGTCCCGTGAT 61.930 60.000 0.00 0.00 0.00 3.06
647 2767 2.547640 CTACTCCCTCCGTCCCGTGA 62.548 65.000 0.00 0.00 0.00 4.35
648 2768 2.044650 TACTCCCTCCGTCCCGTG 60.045 66.667 0.00 0.00 0.00 4.94
649 2769 1.274703 TACTACTCCCTCCGTCCCGT 61.275 60.000 0.00 0.00 0.00 5.28
650 2770 0.110104 ATACTACTCCCTCCGTCCCG 59.890 60.000 0.00 0.00 0.00 5.14
651 2771 1.144503 TGATACTACTCCCTCCGTCCC 59.855 57.143 0.00 0.00 0.00 4.46
652 2772 2.653234 TGATACTACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
653 2773 3.952967 AGTTTGATACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 34.56 4.79
654 2774 3.978610 AGTTTGATACTACTCCCTCCGT 58.021 45.455 0.00 0.00 34.56 4.69
655 2775 5.374921 TCTAGTTTGATACTACTCCCTCCG 58.625 45.833 0.00 0.00 38.33 4.63
656 2776 7.560626 TCTTTCTAGTTTGATACTACTCCCTCC 59.439 40.741 0.00 0.00 38.33 4.30
657 2777 8.522542 TCTTTCTAGTTTGATACTACTCCCTC 57.477 38.462 0.00 0.00 38.33 4.30
658 2778 8.751242 GTTCTTTCTAGTTTGATACTACTCCCT 58.249 37.037 0.00 0.00 38.33 4.20
659 2779 8.529476 TGTTCTTTCTAGTTTGATACTACTCCC 58.471 37.037 0.00 0.00 38.33 4.30
660 2780 9.924650 TTGTTCTTTCTAGTTTGATACTACTCC 57.075 33.333 0.00 0.00 38.33 3.85
692 2813 3.505680 TCGTGCAAGCATTTTCATTACCT 59.494 39.130 0.00 0.00 0.00 3.08
694 2815 5.801947 AGATTCGTGCAAGCATTTTCATTAC 59.198 36.000 0.00 0.00 0.00 1.89
712 2833 9.632969 CTACCATTGATTTTACGTAAAGATTCG 57.367 33.333 19.31 8.99 0.00 3.34
720 2841 7.414222 AGTCCTCTACCATTGATTTTACGTA 57.586 36.000 0.00 0.00 0.00 3.57
722 2843 6.037172 CCAAGTCCTCTACCATTGATTTTACG 59.963 42.308 0.00 0.00 0.00 3.18
736 2857 1.429930 TTGCACACCCAAGTCCTCTA 58.570 50.000 0.00 0.00 0.00 2.43
790 2919 5.646360 GGGGAATTCTCGAAATCACTAACAA 59.354 40.000 5.23 0.00 0.00 2.83
807 2936 3.264845 ACACAGGGCCGGGGAATT 61.265 61.111 14.50 0.00 0.00 2.17
819 2948 3.792401 TCTTTGGTACACACAGACACAG 58.208 45.455 0.00 0.00 39.29 3.66
820 2949 3.897141 TCTTTGGTACACACAGACACA 57.103 42.857 0.00 0.00 39.29 3.72
821 2950 5.163854 GCATATCTTTGGTACACACAGACAC 60.164 44.000 0.00 0.00 38.62 3.67
822 2951 4.935205 GCATATCTTTGGTACACACAGACA 59.065 41.667 0.00 0.00 38.62 3.41
823 2952 4.935205 TGCATATCTTTGGTACACACAGAC 59.065 41.667 0.00 0.00 38.62 3.51
824 2953 5.159273 TGCATATCTTTGGTACACACAGA 57.841 39.130 0.00 0.00 39.99 3.41
1227 3912 4.430765 GGATGCCCGACGTGACGT 62.431 66.667 11.70 11.70 45.10 4.34
1412 4097 1.476007 GGTGCTGGTGAGACTGAGGT 61.476 60.000 0.00 0.00 0.00 3.85
1418 4103 3.311110 TCGGGGTGCTGGTGAGAC 61.311 66.667 0.00 0.00 0.00 3.36
1433 4118 0.590230 GAGAATCAGAGACGCGGTCG 60.590 60.000 12.47 3.83 34.22 4.79
1492 4177 1.863454 CAAAGCCTATGTAGCTCAGCG 59.137 52.381 0.00 0.00 40.49 5.18
1553 4239 4.383649 CACATGAGCTGCAACAATGTTTAC 59.616 41.667 0.00 0.00 0.00 2.01
1591 4277 7.552687 GGTCCAGACACAATACTATGAAATTCA 59.447 37.037 0.00 0.00 0.00 2.57
1632 4318 5.621197 AATTTGTACAGTTTGCGCATCTA 57.379 34.783 12.75 0.00 0.00 1.98
1665 4351 7.801547 ACAATGTTTATGAGATTTTCAAGCG 57.198 32.000 0.00 0.00 39.77 4.68
1741 4427 2.027837 TCATATGCTGCTACATGCCGAT 60.028 45.455 0.00 0.00 42.00 4.18
1770 4475 8.776470 CAATAAAAGAAAAGCCACATGTTCAAT 58.224 29.630 0.00 0.00 0.00 2.57
1847 4553 8.061920 TCTGGTATCCTTCTCTCTCTTATTTGA 58.938 37.037 0.00 0.00 0.00 2.69
2233 4942 2.375174 ACTTCTTGTTCCCCAGCATACA 59.625 45.455 0.00 0.00 0.00 2.29
2258 4967 0.461548 TAGCTGGTCGCATTCCTGAG 59.538 55.000 0.00 0.00 42.61 3.35
2442 5151 6.001460 ACCAAGAAATACTCACCGAAAATGA 58.999 36.000 0.00 0.00 0.00 2.57
2454 5163 3.754965 TGAAGCAGCACCAAGAAATACT 58.245 40.909 0.00 0.00 0.00 2.12
2506 5215 5.311265 TCTGCATTGAAATGTTCAGAGACT 58.689 37.500 8.44 0.00 41.38 3.24
3098 5807 7.521509 AGCATAACTATACAAAGTTCACGAC 57.478 36.000 0.00 0.00 40.20 4.34
3228 5958 7.397892 TGACAAAATTTGAACAGTAACTCCA 57.602 32.000 13.19 0.00 0.00 3.86
3336 6066 5.908916 AAGTAAACGAAAGAACAGAGCTC 57.091 39.130 5.27 5.27 0.00 4.09
3527 6441 4.040936 ACACTACATGGTTGGGCAATTA 57.959 40.909 0.00 0.00 0.00 1.40
3869 6784 2.851824 CACAGAACGGAAACAAGCAAAC 59.148 45.455 0.00 0.00 0.00 2.93
3894 6809 3.380004 ACGCCTCTTGAAACACAAAATGA 59.620 39.130 0.00 0.00 38.08 2.57
3915 6831 3.000082 GCAACAAGCCTACAACAGAAC 58.000 47.619 0.00 0.00 37.23 3.01
3984 6905 4.811908 TCGATTCATGGTGTCTTCGTTTA 58.188 39.130 0.00 0.00 0.00 2.01
3995 6916 4.156008 GCTTGGTTAGTTTCGATTCATGGT 59.844 41.667 0.00 0.00 0.00 3.55
4085 7006 4.282957 TGCAAAAATTCTGAAGCATGGGTA 59.717 37.500 0.00 0.00 0.00 3.69
4113 7034 1.757118 TGGGCTCTAGACGAAGATTGG 59.243 52.381 0.00 0.00 0.00 3.16
4340 7262 4.455606 AGAAAACAAGAGCTACAAGCACT 58.544 39.130 1.22 0.00 45.56 4.40
4444 7369 4.397420 TCCTGAATTCTGCAGTTGCTTAA 58.603 39.130 14.67 0.00 42.66 1.85
4453 7378 5.509501 GGTTGTCAAATTCCTGAATTCTGCA 60.510 40.000 7.05 3.20 39.88 4.41
4597 7522 2.384203 CGACATCGCCTTCCTTTCC 58.616 57.895 0.00 0.00 0.00 3.13
4675 7601 3.382546 ACCCAGTACATACACGGATACAC 59.617 47.826 0.00 0.00 0.00 2.90
4676 7602 3.634504 ACCCAGTACATACACGGATACA 58.365 45.455 0.00 0.00 0.00 2.29
4677 7603 5.065914 TCTACCCAGTACATACACGGATAC 58.934 45.833 0.00 0.00 0.00 2.24
4678 7604 5.163163 ACTCTACCCAGTACATACACGGATA 60.163 44.000 0.00 0.00 0.00 2.59
4679 7605 4.142790 CTCTACCCAGTACATACACGGAT 58.857 47.826 0.00 0.00 0.00 4.18
4680 7606 3.054139 ACTCTACCCAGTACATACACGGA 60.054 47.826 0.00 0.00 0.00 4.69
4681 7607 3.285484 ACTCTACCCAGTACATACACGG 58.715 50.000 0.00 0.00 0.00 4.94
4682 7608 5.530171 ACATACTCTACCCAGTACATACACG 59.470 44.000 0.00 0.00 31.53 4.49
4710 7636 3.897141 TCACCAAGTACAACACACAGA 57.103 42.857 0.00 0.00 0.00 3.41
4869 7846 2.110578 GCTGGACAGGGGCATTTTTAT 58.889 47.619 1.01 0.00 0.00 1.40
4906 7883 9.988350 CACACACAAGAAACATATATTTCCTAC 57.012 33.333 2.82 0.00 39.05 3.18
4907 7884 9.952030 TCACACACAAGAAACATATATTTCCTA 57.048 29.630 2.82 0.00 39.05 2.94
4908 7885 8.862325 TCACACACAAGAAACATATATTTCCT 57.138 30.769 2.82 0.00 39.05 3.36
4939 7916 4.039603 AGAGAACAAGGAAATTCAGGGG 57.960 45.455 0.00 0.00 0.00 4.79
4942 7919 7.969536 TGTCTTAGAGAACAAGGAAATTCAG 57.030 36.000 0.00 0.00 0.00 3.02
4943 7920 8.378565 AGATGTCTTAGAGAACAAGGAAATTCA 58.621 33.333 0.00 0.00 0.00 2.57
4944 7921 8.785329 AGATGTCTTAGAGAACAAGGAAATTC 57.215 34.615 0.00 0.00 0.00 2.17
4945 7922 9.579932 AAAGATGTCTTAGAGAACAAGGAAATT 57.420 29.630 0.00 0.00 34.61 1.82
4946 7923 9.225436 GAAAGATGTCTTAGAGAACAAGGAAAT 57.775 33.333 0.00 0.00 34.61 2.17
4950 7927 6.090088 CGTGAAAGATGTCTTAGAGAACAAGG 59.910 42.308 0.00 0.00 34.61 3.61
4951 7928 6.090088 CCGTGAAAGATGTCTTAGAGAACAAG 59.910 42.308 0.00 0.00 34.61 3.16
4952 7929 5.926542 CCGTGAAAGATGTCTTAGAGAACAA 59.073 40.000 0.00 0.00 34.61 2.83
4953 7930 5.010719 ACCGTGAAAGATGTCTTAGAGAACA 59.989 40.000 0.00 0.00 34.61 3.18
4954 7931 5.471257 ACCGTGAAAGATGTCTTAGAGAAC 58.529 41.667 0.00 0.00 34.61 3.01
4957 7934 5.460419 GCATACCGTGAAAGATGTCTTAGAG 59.540 44.000 0.00 0.00 34.61 2.43
4967 7944 1.546923 TCGAAGGCATACCGTGAAAGA 59.453 47.619 0.00 0.00 42.76 2.52
4975 7952 1.066430 TCAGTTGGTCGAAGGCATACC 60.066 52.381 0.00 0.00 0.00 2.73
4979 7956 2.045561 TTTTCAGTTGGTCGAAGGCA 57.954 45.000 0.00 0.00 0.00 4.75
5046 8023 1.620413 GCATCGCAAACCAAAGCTGC 61.620 55.000 0.00 0.00 0.00 5.25
5062 8039 6.183361 TGCCCATCTCTATAAAACTACAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
5071 8048 7.998383 TGCTAATTTCTGCCCATCTCTATAAAA 59.002 33.333 0.00 0.00 0.00 1.52
5075 8052 5.072872 ACTGCTAATTTCTGCCCATCTCTAT 59.927 40.000 0.00 0.00 0.00 1.98
5097 8074 6.607600 TGGTACTCATACTCTCTTATTGCACT 59.392 38.462 0.00 0.00 0.00 4.40
5113 8090 2.874701 GCATGATTCGCTTGGTACTCAT 59.125 45.455 0.00 0.00 0.00 2.90
5119 8096 4.338964 TGAAATATGCATGATTCGCTTGGT 59.661 37.500 10.16 0.00 0.00 3.67
5137 8114 4.546829 ACAGAAAGGCAATGCATGAAAT 57.453 36.364 7.79 0.00 0.00 2.17
5149 8126 0.035739 TGGACCGGTAACAGAAAGGC 59.964 55.000 7.34 0.00 0.00 4.35
5153 8130 5.246656 TCTCTAATTTGGACCGGTAACAGAA 59.753 40.000 7.34 7.81 0.00 3.02
5159 8136 2.433239 GGCTCTCTAATTTGGACCGGTA 59.567 50.000 7.34 0.00 0.00 4.02
5174 8151 3.169198 CCGAGTTTTGCGGCTCTC 58.831 61.111 0.00 3.61 42.55 3.20
5194 8171 3.094572 CAGCCAGGTGATTGATCCTTTT 58.905 45.455 0.00 0.00 30.91 2.27
5210 8187 5.732247 GCGTTTTCTTTTTCTAAGACAGCCA 60.732 40.000 0.00 0.00 0.00 4.75
5212 8189 5.511571 AGCGTTTTCTTTTTCTAAGACAGC 58.488 37.500 0.00 0.00 0.00 4.40
5219 8196 3.818773 CCTGGGAGCGTTTTCTTTTTCTA 59.181 43.478 0.00 0.00 0.00 2.10
5232 8210 2.753966 CGACATTTGCCTGGGAGCG 61.754 63.158 0.00 0.00 34.65 5.03
5249 8227 3.692101 AGAGGAGGCACGAGATATATTCG 59.308 47.826 12.67 12.67 43.38 3.34
5260 8238 2.124693 GGAGAGGAGAGGAGGCACG 61.125 68.421 0.00 0.00 0.00 5.34
5265 8243 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
5266 8244 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
5268 8246 2.039084 GCTAGAGGAGAGGAGAGGAGAG 59.961 59.091 0.00 0.00 0.00 3.20
5269 8247 2.054799 GCTAGAGGAGAGGAGAGGAGA 58.945 57.143 0.00 0.00 0.00 3.71
5309 8435 0.953960 GGGGCCTGTTTGTACTCGTG 60.954 60.000 0.84 0.00 0.00 4.35
5317 8443 4.636435 ACGTCCGGGGCCTGTTTG 62.636 66.667 12.30 2.41 0.00 2.93
5356 8486 7.447374 TGTAAAGTTGTAATCATTGTGGGAG 57.553 36.000 0.00 0.00 0.00 4.30
5400 8530 4.453478 CAGCAGCATTTGTAAGAGACTTGA 59.547 41.667 0.00 0.00 0.00 3.02
5433 8563 3.381045 GGTGTTAAAGTTCAGCCTTTGC 58.619 45.455 0.00 0.00 36.18 3.68
5471 8601 7.336931 CCCTATTGAAGTGCAAGTGTAAATACT 59.663 37.037 0.00 0.00 40.42 2.12
5886 9270 3.094058 CGCGCTCGATCGATCACC 61.094 66.667 24.40 10.85 38.10 4.02
5915 9299 4.572571 AACCGACCAAAGGCGCCA 62.573 61.111 31.54 0.00 0.00 5.69
5916 9300 2.742710 GAAAACCGACCAAAGGCGCC 62.743 60.000 21.89 21.89 0.00 6.53
5917 9301 1.371267 GAAAACCGACCAAAGGCGC 60.371 57.895 0.00 0.00 0.00 6.53
5918 9302 0.237498 GAGAAAACCGACCAAAGGCG 59.763 55.000 0.00 0.00 0.00 5.52
5919 9303 0.237498 CGAGAAAACCGACCAAAGGC 59.763 55.000 0.00 0.00 0.00 4.35
5920 9304 1.873698 TCGAGAAAACCGACCAAAGG 58.126 50.000 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.