Multiple sequence alignment - TraesCS6D01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G257100 chr6D 100.000 2557 0 0 1 2557 363062739 363065295 0.000000e+00 4723.0
1 TraesCS6D01G257100 chr6D 100.000 39 0 0 2 40 363061909 363061871 3.530000e-09 73.1
2 TraesCS6D01G257100 chr6B 88.247 1004 49 21 435 1393 545252697 545253676 0.000000e+00 1136.0
3 TraesCS6D01G257100 chr6B 90.500 400 30 7 1835 2232 545254479 545254872 2.920000e-144 521.0
4 TraesCS6D01G257100 chr6B 92.683 287 12 2 2272 2557 545254963 545255241 3.060000e-109 405.0
5 TraesCS6D01G257100 chr6B 91.703 229 16 2 1329 1554 545253682 545253910 5.310000e-82 315.0
6 TraesCS6D01G257100 chr6B 88.649 185 17 1 1566 1746 545254077 545254261 3.310000e-54 222.0
7 TraesCS6D01G257100 chr6B 97.222 36 1 0 2233 2268 545254905 545254940 7.640000e-06 62.1
8 TraesCS6D01G257100 chr6A 89.018 601 35 18 802 1398 503768863 503769436 0.000000e+00 715.0
9 TraesCS6D01G257100 chr6A 86.680 518 46 19 1328 1842 503769453 503769950 1.030000e-153 553.0
10 TraesCS6D01G257100 chr6A 92.542 295 11 3 2263 2557 503770237 503770520 1.830000e-111 412.0
11 TraesCS6D01G257100 chr6A 100.000 40 0 0 2233 2272 503770188 503770227 9.810000e-10 75.0
12 TraesCS6D01G257100 chr2A 78.856 402 51 25 1154 1541 686839348 686839729 9.140000e-60 241.0
13 TraesCS6D01G257100 chr2D 77.465 426 63 22 1150 1555 544610585 544610997 9.210000e-55 224.0
14 TraesCS6D01G257100 chr2B 76.886 411 63 21 1150 1541 650164656 650165053 1.200000e-48 204.0
15 TraesCS6D01G257100 chr4A 79.286 280 45 9 1150 1421 5552532 5552258 1.560000e-42 183.0
16 TraesCS6D01G257100 chr4B 85.897 156 17 3 1150 1304 581068926 581069077 7.320000e-36 161.0
17 TraesCS6D01G257100 chr4D 80.357 224 27 9 1055 1267 464660449 464660666 1.230000e-33 154.0
18 TraesCS6D01G257100 chr7A 87.143 70 5 4 4 70 695832752 695832684 2.730000e-10 76.8
19 TraesCS6D01G257100 chr7A 100.000 38 0 0 1 38 685561438 685561401 1.270000e-08 71.3
20 TraesCS6D01G257100 chr7A 95.349 43 0 2 3 44 125242699 125242740 1.640000e-07 67.6
21 TraesCS6D01G257100 chr1D 93.617 47 3 0 1 47 419029235 419029281 1.270000e-08 71.3
22 TraesCS6D01G257100 chr1D 97.436 39 1 0 1 39 419027799 419027761 1.640000e-07 67.6
23 TraesCS6D01G257100 chr5B 97.500 40 1 0 1 40 638339064 638339103 4.570000e-08 69.4
24 TraesCS6D01G257100 chr1A 100.000 37 0 0 2 38 84274079 84274115 4.570000e-08 69.4
25 TraesCS6D01G257100 chr3B 93.478 46 0 3 3 46 17907914 17907958 5.910000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G257100 chr6D 363062739 363065295 2556 False 4723.000000 4723 100.000000 1 2557 1 chr6D.!!$F1 2556
1 TraesCS6D01G257100 chr6B 545252697 545255241 2544 False 443.516667 1136 91.500667 435 2557 6 chr6B.!!$F1 2122
2 TraesCS6D01G257100 chr6A 503768863 503770520 1657 False 438.750000 715 92.060000 802 2557 4 chr6A.!!$F1 1755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 394 0.032952 GCGCCCATATCTAACGTGGA 59.967 55.0 0.0 0.0 34.94 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1884 1.13379 CTATGGCTGCAAAGGCTGAAC 59.866 52.381 0.5 0.0 41.06 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.371115 CGGTTTCATGAATTGTGGTAGTT 57.629 39.130 9.40 0.00 0.00 2.24
23 24 5.768317 CGGTTTCATGAATTGTGGTAGTTT 58.232 37.500 9.40 0.00 0.00 2.66
24 25 6.212955 CGGTTTCATGAATTGTGGTAGTTTT 58.787 36.000 9.40 0.00 0.00 2.43
25 26 6.699642 CGGTTTCATGAATTGTGGTAGTTTTT 59.300 34.615 9.40 0.00 0.00 1.94
26 27 7.306515 CGGTTTCATGAATTGTGGTAGTTTTTG 60.307 37.037 9.40 0.00 0.00 2.44
27 28 7.042119 GGTTTCATGAATTGTGGTAGTTTTTGG 60.042 37.037 9.40 0.00 0.00 3.28
28 29 6.723298 TCATGAATTGTGGTAGTTTTTGGT 57.277 33.333 0.00 0.00 0.00 3.67
29 30 7.118496 TCATGAATTGTGGTAGTTTTTGGTT 57.882 32.000 0.00 0.00 0.00 3.67
30 31 8.239038 TCATGAATTGTGGTAGTTTTTGGTTA 57.761 30.769 0.00 0.00 0.00 2.85
31 32 8.696374 TCATGAATTGTGGTAGTTTTTGGTTAA 58.304 29.630 0.00 0.00 0.00 2.01
32 33 9.319143 CATGAATTGTGGTAGTTTTTGGTTAAA 57.681 29.630 0.00 0.00 0.00 1.52
38 39 8.168790 TGTGGTAGTTTTTGGTTAAATACTCC 57.831 34.615 0.00 0.00 38.47 3.85
39 40 7.041235 TGTGGTAGTTTTTGGTTAAATACTCCG 60.041 37.037 0.00 0.00 38.47 4.63
40 41 6.430616 TGGTAGTTTTTGGTTAAATACTCCGG 59.569 38.462 0.00 0.00 38.47 5.14
41 42 5.381174 AGTTTTTGGTTAAATACTCCGGC 57.619 39.130 0.00 0.00 34.37 6.13
42 43 5.074804 AGTTTTTGGTTAAATACTCCGGCT 58.925 37.500 0.00 0.00 34.37 5.52
43 44 5.048294 AGTTTTTGGTTAAATACTCCGGCTG 60.048 40.000 0.00 0.00 34.37 4.85
44 45 3.985019 TTGGTTAAATACTCCGGCTGA 57.015 42.857 0.00 0.00 0.00 4.26
46 47 2.169769 TGGTTAAATACTCCGGCTGAGG 59.830 50.000 10.77 0.00 46.01 3.86
47 48 2.169978 GGTTAAATACTCCGGCTGAGGT 59.830 50.000 10.77 0.00 46.01 3.85
48 49 3.370209 GGTTAAATACTCCGGCTGAGGTT 60.370 47.826 10.77 2.42 46.01 3.50
49 50 4.141869 GGTTAAATACTCCGGCTGAGGTTA 60.142 45.833 10.77 3.49 46.01 2.85
50 51 5.454329 GGTTAAATACTCCGGCTGAGGTTAT 60.454 44.000 10.77 0.00 46.01 1.89
51 52 3.753294 AATACTCCGGCTGAGGTTATG 57.247 47.619 10.77 0.00 46.01 1.90
52 53 2.154567 TACTCCGGCTGAGGTTATGT 57.845 50.000 10.77 0.00 46.01 2.29
53 54 0.537188 ACTCCGGCTGAGGTTATGTG 59.463 55.000 10.77 0.00 46.01 3.21
54 55 0.824109 CTCCGGCTGAGGTTATGTGA 59.176 55.000 0.00 0.00 37.45 3.58
55 56 0.824109 TCCGGCTGAGGTTATGTGAG 59.176 55.000 0.00 0.00 0.00 3.51
56 57 0.179073 CCGGCTGAGGTTATGTGAGG 60.179 60.000 0.00 0.00 0.00 3.86
57 58 0.824109 CGGCTGAGGTTATGTGAGGA 59.176 55.000 0.00 0.00 0.00 3.71
58 59 1.414181 CGGCTGAGGTTATGTGAGGAT 59.586 52.381 0.00 0.00 0.00 3.24
59 60 2.546795 CGGCTGAGGTTATGTGAGGATC 60.547 54.545 0.00 0.00 0.00 3.36
72 73 3.328535 TGAGGATCATAGTACAGGGCA 57.671 47.619 0.00 0.00 42.56 5.36
73 74 3.653164 TGAGGATCATAGTACAGGGCAA 58.347 45.455 0.00 0.00 42.56 4.52
74 75 3.388024 TGAGGATCATAGTACAGGGCAAC 59.612 47.826 0.00 0.00 42.56 4.17
75 76 3.384168 AGGATCATAGTACAGGGCAACA 58.616 45.455 0.00 0.00 39.74 3.33
76 77 3.134804 AGGATCATAGTACAGGGCAACAC 59.865 47.826 0.00 0.00 39.74 3.32
77 78 3.134804 GGATCATAGTACAGGGCAACACT 59.865 47.826 0.00 0.00 39.74 3.55
78 79 3.887621 TCATAGTACAGGGCAACACTC 57.112 47.619 0.00 0.00 39.74 3.51
79 80 3.169908 TCATAGTACAGGGCAACACTCA 58.830 45.455 0.00 0.00 39.74 3.41
80 81 3.056107 TCATAGTACAGGGCAACACTCAC 60.056 47.826 0.00 0.00 39.74 3.51
81 82 1.128200 AGTACAGGGCAACACTCACA 58.872 50.000 0.00 0.00 39.74 3.58
82 83 1.699634 AGTACAGGGCAACACTCACAT 59.300 47.619 0.00 0.00 39.74 3.21
83 84 2.903784 AGTACAGGGCAACACTCACATA 59.096 45.455 0.00 0.00 39.74 2.29
84 85 2.479566 ACAGGGCAACACTCACATAG 57.520 50.000 0.00 0.00 39.74 2.23
85 86 1.977854 ACAGGGCAACACTCACATAGA 59.022 47.619 0.00 0.00 39.74 1.98
105 106 3.141409 GGGGGCAAACTCCAAAAGA 57.859 52.632 0.00 0.00 0.00 2.52
106 107 0.679505 GGGGGCAAACTCCAAAAGAC 59.320 55.000 0.00 0.00 0.00 3.01
107 108 1.408969 GGGGCAAACTCCAAAAGACA 58.591 50.000 0.00 0.00 0.00 3.41
108 109 1.068588 GGGGCAAACTCCAAAAGACAC 59.931 52.381 0.00 0.00 0.00 3.67
109 110 1.068588 GGGCAAACTCCAAAAGACACC 59.931 52.381 0.00 0.00 0.00 4.16
110 111 1.754226 GGCAAACTCCAAAAGACACCA 59.246 47.619 0.00 0.00 0.00 4.17
111 112 2.481276 GGCAAACTCCAAAAGACACCAC 60.481 50.000 0.00 0.00 0.00 4.16
112 113 2.165437 GCAAACTCCAAAAGACACCACA 59.835 45.455 0.00 0.00 0.00 4.17
113 114 3.181476 GCAAACTCCAAAAGACACCACAT 60.181 43.478 0.00 0.00 0.00 3.21
114 115 4.362279 CAAACTCCAAAAGACACCACATG 58.638 43.478 0.00 0.00 0.00 3.21
115 116 3.576078 ACTCCAAAAGACACCACATGA 57.424 42.857 0.00 0.00 0.00 3.07
116 117 3.480470 ACTCCAAAAGACACCACATGAG 58.520 45.455 0.00 0.00 0.00 2.90
117 118 3.136443 ACTCCAAAAGACACCACATGAGA 59.864 43.478 0.00 0.00 0.00 3.27
118 119 3.743521 TCCAAAAGACACCACATGAGAG 58.256 45.455 0.00 0.00 0.00 3.20
119 120 2.227388 CCAAAAGACACCACATGAGAGC 59.773 50.000 0.00 0.00 0.00 4.09
120 121 3.144506 CAAAAGACACCACATGAGAGCT 58.855 45.455 0.00 0.00 0.00 4.09
121 122 2.758736 AAGACACCACATGAGAGCTC 57.241 50.000 5.27 5.27 0.00 4.09
122 123 1.935799 AGACACCACATGAGAGCTCT 58.064 50.000 18.28 18.28 0.00 4.09
123 124 1.549620 AGACACCACATGAGAGCTCTG 59.450 52.381 23.91 10.71 0.00 3.35
124 125 1.547820 GACACCACATGAGAGCTCTGA 59.452 52.381 23.91 14.67 0.00 3.27
125 126 2.168106 GACACCACATGAGAGCTCTGAT 59.832 50.000 23.91 16.74 0.00 2.90
126 127 3.369175 ACACCACATGAGAGCTCTGATA 58.631 45.455 23.91 7.73 0.00 2.15
127 128 3.771479 ACACCACATGAGAGCTCTGATAA 59.229 43.478 23.91 4.08 0.00 1.75
128 129 4.408270 ACACCACATGAGAGCTCTGATAAT 59.592 41.667 23.91 7.15 0.00 1.28
129 130 4.750598 CACCACATGAGAGCTCTGATAATG 59.249 45.833 23.91 18.59 0.00 1.90
130 131 4.202336 ACCACATGAGAGCTCTGATAATGG 60.202 45.833 29.09 29.09 33.89 3.16
131 132 3.747010 CACATGAGAGCTCTGATAATGGC 59.253 47.826 23.91 4.22 0.00 4.40
132 133 3.390311 ACATGAGAGCTCTGATAATGGCA 59.610 43.478 23.91 10.59 0.00 4.92
133 134 4.141551 ACATGAGAGCTCTGATAATGGCAA 60.142 41.667 23.91 0.00 0.00 4.52
134 135 4.701651 TGAGAGCTCTGATAATGGCAAT 57.298 40.909 23.91 0.00 0.00 3.56
135 136 4.386711 TGAGAGCTCTGATAATGGCAATG 58.613 43.478 23.91 0.00 0.00 2.82
136 137 3.147629 AGAGCTCTGATAATGGCAATGC 58.852 45.455 17.42 0.00 0.00 3.56
146 147 2.261361 GGCAATGCCGAAACCACC 59.739 61.111 9.14 0.00 39.62 4.61
147 148 2.126502 GCAATGCCGAAACCACCG 60.127 61.111 0.00 0.00 0.00 4.94
153 154 2.642700 CCGAAACCACCGGCAAAG 59.357 61.111 0.00 0.00 40.54 2.77
154 155 1.894756 CCGAAACCACCGGCAAAGA 60.895 57.895 0.00 0.00 40.54 2.52
155 156 1.281656 CGAAACCACCGGCAAAGAC 59.718 57.895 0.00 0.00 0.00 3.01
156 157 1.658114 GAAACCACCGGCAAAGACC 59.342 57.895 0.00 0.00 0.00 3.85
157 158 1.076632 AAACCACCGGCAAAGACCA 60.077 52.632 0.00 0.00 0.00 4.02
158 159 1.388837 AAACCACCGGCAAAGACCAC 61.389 55.000 0.00 0.00 0.00 4.16
159 160 2.203280 CCACCGGCAAAGACCACA 60.203 61.111 0.00 0.00 0.00 4.17
160 161 2.260869 CCACCGGCAAAGACCACAG 61.261 63.158 0.00 0.00 0.00 3.66
161 162 1.227823 CACCGGCAAAGACCACAGA 60.228 57.895 0.00 0.00 0.00 3.41
162 163 1.227853 ACCGGCAAAGACCACAGAC 60.228 57.895 0.00 0.00 0.00 3.51
163 164 1.227823 CCGGCAAAGACCACAGACA 60.228 57.895 0.00 0.00 0.00 3.41
164 165 1.230635 CCGGCAAAGACCACAGACAG 61.231 60.000 0.00 0.00 0.00 3.51
165 166 0.532862 CGGCAAAGACCACAGACAGT 60.533 55.000 0.00 0.00 0.00 3.55
166 167 1.230324 GGCAAAGACCACAGACAGTC 58.770 55.000 0.00 0.00 0.00 3.51
167 168 1.475034 GGCAAAGACCACAGACAGTCA 60.475 52.381 2.66 0.00 35.38 3.41
168 169 2.498167 GCAAAGACCACAGACAGTCAT 58.502 47.619 2.66 0.00 35.38 3.06
169 170 2.880890 GCAAAGACCACAGACAGTCATT 59.119 45.455 2.66 0.00 35.38 2.57
170 171 4.065088 GCAAAGACCACAGACAGTCATTA 58.935 43.478 2.66 0.00 35.38 1.90
171 172 4.697352 GCAAAGACCACAGACAGTCATTAT 59.303 41.667 2.66 0.00 35.38 1.28
172 173 5.391310 GCAAAGACCACAGACAGTCATTATG 60.391 44.000 2.66 0.00 35.38 1.90
173 174 5.745312 AAGACCACAGACAGTCATTATGA 57.255 39.130 2.66 0.00 35.38 2.15
174 175 5.745312 AGACCACAGACAGTCATTATGAA 57.255 39.130 2.66 0.00 35.38 2.57
175 176 5.728471 AGACCACAGACAGTCATTATGAAG 58.272 41.667 2.66 0.00 35.38 3.02
176 177 4.836825 ACCACAGACAGTCATTATGAAGG 58.163 43.478 2.66 3.38 0.00 3.46
177 178 4.532126 ACCACAGACAGTCATTATGAAGGA 59.468 41.667 2.66 0.00 0.00 3.36
178 179 5.114780 CCACAGACAGTCATTATGAAGGAG 58.885 45.833 2.66 0.00 0.00 3.69
179 180 4.569966 CACAGACAGTCATTATGAAGGAGC 59.430 45.833 2.66 0.00 0.00 4.70
180 181 4.469227 ACAGACAGTCATTATGAAGGAGCT 59.531 41.667 2.66 0.00 0.00 4.09
181 182 5.658634 ACAGACAGTCATTATGAAGGAGCTA 59.341 40.000 2.66 0.00 0.00 3.32
182 183 5.982516 CAGACAGTCATTATGAAGGAGCTAC 59.017 44.000 2.66 0.00 0.00 3.58
183 184 4.938080 ACAGTCATTATGAAGGAGCTACG 58.062 43.478 0.00 0.00 0.00 3.51
184 185 3.738282 CAGTCATTATGAAGGAGCTACGC 59.262 47.826 0.00 0.00 0.00 4.42
185 186 3.060602 GTCATTATGAAGGAGCTACGCC 58.939 50.000 0.00 0.00 0.00 5.68
186 187 2.698274 TCATTATGAAGGAGCTACGCCA 59.302 45.455 0.00 0.00 0.00 5.69
187 188 2.596904 TTATGAAGGAGCTACGCCAC 57.403 50.000 0.00 0.00 0.00 5.01
188 189 1.776662 TATGAAGGAGCTACGCCACT 58.223 50.000 0.00 0.00 0.00 4.00
189 190 0.176680 ATGAAGGAGCTACGCCACTG 59.823 55.000 0.00 0.00 0.00 3.66
190 191 1.811679 GAAGGAGCTACGCCACTGC 60.812 63.158 0.00 0.00 0.00 4.40
191 192 3.316573 AAGGAGCTACGCCACTGCC 62.317 63.158 0.00 0.00 0.00 4.85
192 193 4.082523 GGAGCTACGCCACTGCCA 62.083 66.667 0.00 0.00 0.00 4.92
193 194 2.047274 GAGCTACGCCACTGCCAA 60.047 61.111 0.00 0.00 0.00 4.52
194 195 2.358737 AGCTACGCCACTGCCAAC 60.359 61.111 0.00 0.00 0.00 3.77
195 196 3.431725 GCTACGCCACTGCCAACC 61.432 66.667 0.00 0.00 0.00 3.77
196 197 2.746277 CTACGCCACTGCCAACCC 60.746 66.667 0.00 0.00 0.00 4.11
197 198 4.338710 TACGCCACTGCCAACCCC 62.339 66.667 0.00 0.00 0.00 4.95
212 213 4.688419 CCCGCAGCGTGCAAACAG 62.688 66.667 15.05 0.00 45.36 3.16
213 214 4.688419 CCGCAGCGTGCAAACAGG 62.688 66.667 15.05 0.00 45.36 4.00
214 215 4.688419 CGCAGCGTGCAAACAGGG 62.688 66.667 6.65 0.00 45.36 4.45
215 216 3.286751 GCAGCGTGCAAACAGGGA 61.287 61.111 0.00 0.00 44.26 4.20
216 217 2.639286 CAGCGTGCAAACAGGGAC 59.361 61.111 0.00 0.00 32.23 4.46
219 220 2.631428 CGTGCAAACAGGGACGTG 59.369 61.111 0.00 0.00 45.81 4.49
220 221 2.892334 CGTGCAAACAGGGACGTGG 61.892 63.158 0.00 0.00 45.81 4.94
221 222 1.525077 GTGCAAACAGGGACGTGGA 60.525 57.895 0.00 0.00 0.00 4.02
222 223 1.098712 GTGCAAACAGGGACGTGGAA 61.099 55.000 0.00 0.00 0.00 3.53
223 224 0.817634 TGCAAACAGGGACGTGGAAG 60.818 55.000 0.00 0.00 0.00 3.46
224 225 0.534203 GCAAACAGGGACGTGGAAGA 60.534 55.000 0.00 0.00 0.00 2.87
225 226 1.882352 GCAAACAGGGACGTGGAAGAT 60.882 52.381 0.00 0.00 0.00 2.40
226 227 2.504367 CAAACAGGGACGTGGAAGATT 58.496 47.619 0.00 0.00 0.00 2.40
227 228 2.474410 AACAGGGACGTGGAAGATTC 57.526 50.000 0.00 0.00 0.00 2.52
228 229 1.645710 ACAGGGACGTGGAAGATTCT 58.354 50.000 0.00 0.00 0.00 2.40
229 230 2.816411 ACAGGGACGTGGAAGATTCTA 58.184 47.619 0.00 0.00 0.00 2.10
230 231 3.170717 ACAGGGACGTGGAAGATTCTAA 58.829 45.455 0.00 0.00 0.00 2.10
231 232 3.775316 ACAGGGACGTGGAAGATTCTAAT 59.225 43.478 0.00 0.00 0.00 1.73
232 233 4.225267 ACAGGGACGTGGAAGATTCTAATT 59.775 41.667 0.00 0.00 0.00 1.40
233 234 4.811557 CAGGGACGTGGAAGATTCTAATTC 59.188 45.833 0.00 0.00 0.00 2.17
234 235 3.802685 GGGACGTGGAAGATTCTAATTCG 59.197 47.826 0.00 0.00 0.00 3.34
235 236 4.430908 GGACGTGGAAGATTCTAATTCGT 58.569 43.478 0.00 6.60 0.00 3.85
236 237 4.868734 GGACGTGGAAGATTCTAATTCGTT 59.131 41.667 0.00 0.00 0.00 3.85
237 238 5.220416 GGACGTGGAAGATTCTAATTCGTTG 60.220 44.000 0.00 0.00 0.00 4.10
238 239 5.475719 ACGTGGAAGATTCTAATTCGTTGA 58.524 37.500 0.00 0.00 0.00 3.18
239 240 5.577164 ACGTGGAAGATTCTAATTCGTTGAG 59.423 40.000 0.00 0.00 0.00 3.02
240 241 5.500931 CGTGGAAGATTCTAATTCGTTGAGC 60.501 44.000 0.00 0.00 0.00 4.26
241 242 5.582665 GTGGAAGATTCTAATTCGTTGAGCT 59.417 40.000 0.00 0.00 0.00 4.09
242 243 6.092807 GTGGAAGATTCTAATTCGTTGAGCTT 59.907 38.462 0.00 0.00 0.00 3.74
243 244 6.092670 TGGAAGATTCTAATTCGTTGAGCTTG 59.907 38.462 0.00 0.00 0.00 4.01
244 245 5.476752 AGATTCTAATTCGTTGAGCTTGC 57.523 39.130 0.00 0.00 0.00 4.01
245 246 4.937620 AGATTCTAATTCGTTGAGCTTGCA 59.062 37.500 0.00 0.00 0.00 4.08
246 247 4.404507 TTCTAATTCGTTGAGCTTGCAC 57.595 40.909 0.00 0.00 0.00 4.57
247 248 2.411748 TCTAATTCGTTGAGCTTGCACG 59.588 45.455 6.88 6.88 0.00 5.34
248 249 1.225855 AATTCGTTGAGCTTGCACGA 58.774 45.000 10.82 10.82 0.00 4.35
249 250 1.225855 ATTCGTTGAGCTTGCACGAA 58.774 45.000 22.89 22.89 44.88 3.85
250 251 0.581529 TTCGTTGAGCTTGCACGAAG 59.418 50.000 19.08 2.13 37.80 3.79
251 252 1.205064 CGTTGAGCTTGCACGAAGG 59.795 57.895 7.33 0.00 31.56 3.46
252 253 1.221466 CGTTGAGCTTGCACGAAGGA 61.221 55.000 7.33 0.00 31.56 3.36
253 254 0.235926 GTTGAGCTTGCACGAAGGAC 59.764 55.000 0.00 0.00 31.56 3.85
263 264 4.110493 CGAAGGACGGGCAGATTC 57.890 61.111 0.00 0.00 38.46 2.52
264 265 1.517832 CGAAGGACGGGCAGATTCT 59.482 57.895 0.00 0.00 38.46 2.40
265 266 0.528684 CGAAGGACGGGCAGATTCTC 60.529 60.000 0.00 0.00 38.46 2.87
266 267 0.179070 GAAGGACGGGCAGATTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
267 268 0.909610 AAGGACGGGCAGATTCTCCA 60.910 55.000 0.00 0.00 0.00 3.86
268 269 1.153349 GGACGGGCAGATTCTCCAC 60.153 63.158 0.00 0.00 0.00 4.02
269 270 1.153349 GACGGGCAGATTCTCCACC 60.153 63.158 0.00 0.00 0.00 4.61
270 271 2.202932 CGGGCAGATTCTCCACCG 60.203 66.667 6.00 6.00 35.01 4.94
271 272 2.721167 CGGGCAGATTCTCCACCGA 61.721 63.158 12.47 0.00 43.69 4.69
272 273 1.602237 GGGCAGATTCTCCACCGAA 59.398 57.895 0.00 0.00 0.00 4.30
273 274 0.035439 GGGCAGATTCTCCACCGAAA 60.035 55.000 0.00 0.00 0.00 3.46
274 275 1.373570 GGCAGATTCTCCACCGAAAG 58.626 55.000 0.00 0.00 0.00 2.62
288 289 2.755836 CGAAAGGGTGATTATTGCCG 57.244 50.000 0.00 0.00 0.00 5.69
289 290 2.285083 CGAAAGGGTGATTATTGCCGA 58.715 47.619 0.00 0.00 0.00 5.54
290 291 2.680841 CGAAAGGGTGATTATTGCCGAA 59.319 45.455 0.00 0.00 0.00 4.30
291 292 3.242739 CGAAAGGGTGATTATTGCCGAAG 60.243 47.826 0.00 0.00 0.00 3.79
306 307 1.257743 CGAAGGGAGTGAGGAGAACA 58.742 55.000 0.00 0.00 0.00 3.18
307 308 1.618837 CGAAGGGAGTGAGGAGAACAA 59.381 52.381 0.00 0.00 0.00 2.83
308 309 2.353208 CGAAGGGAGTGAGGAGAACAAG 60.353 54.545 0.00 0.00 0.00 3.16
309 310 0.980423 AGGGAGTGAGGAGAACAAGC 59.020 55.000 0.00 0.00 0.00 4.01
310 311 0.390472 GGGAGTGAGGAGAACAAGCG 60.390 60.000 0.00 0.00 0.00 4.68
311 312 0.603569 GGAGTGAGGAGAACAAGCGA 59.396 55.000 0.00 0.00 0.00 4.93
312 313 1.205893 GGAGTGAGGAGAACAAGCGAT 59.794 52.381 0.00 0.00 0.00 4.58
313 314 2.266554 GAGTGAGGAGAACAAGCGATG 58.733 52.381 0.00 0.00 0.00 3.84
314 315 1.895798 AGTGAGGAGAACAAGCGATGA 59.104 47.619 0.00 0.00 0.00 2.92
315 316 2.300152 AGTGAGGAGAACAAGCGATGAA 59.700 45.455 0.00 0.00 0.00 2.57
316 317 2.670414 GTGAGGAGAACAAGCGATGAAG 59.330 50.000 0.00 0.00 0.00 3.02
317 318 2.562738 TGAGGAGAACAAGCGATGAAGA 59.437 45.455 0.00 0.00 0.00 2.87
318 319 3.006859 TGAGGAGAACAAGCGATGAAGAA 59.993 43.478 0.00 0.00 0.00 2.52
319 320 3.997021 GAGGAGAACAAGCGATGAAGAAA 59.003 43.478 0.00 0.00 0.00 2.52
320 321 4.583871 AGGAGAACAAGCGATGAAGAAAT 58.416 39.130 0.00 0.00 0.00 2.17
321 322 4.394300 AGGAGAACAAGCGATGAAGAAATG 59.606 41.667 0.00 0.00 0.00 2.32
322 323 4.393062 GGAGAACAAGCGATGAAGAAATGA 59.607 41.667 0.00 0.00 0.00 2.57
323 324 5.447010 GGAGAACAAGCGATGAAGAAATGAG 60.447 44.000 0.00 0.00 0.00 2.90
324 325 4.394300 AGAACAAGCGATGAAGAAATGAGG 59.606 41.667 0.00 0.00 0.00 3.86
325 326 2.421424 ACAAGCGATGAAGAAATGAGGC 59.579 45.455 0.00 0.00 0.00 4.70
326 327 2.408271 AGCGATGAAGAAATGAGGCA 57.592 45.000 0.00 0.00 0.00 4.75
327 328 2.928334 AGCGATGAAGAAATGAGGCAT 58.072 42.857 0.00 0.00 0.00 4.40
328 329 2.617308 AGCGATGAAGAAATGAGGCATG 59.383 45.455 0.00 0.00 0.00 4.06
329 330 2.287427 GCGATGAAGAAATGAGGCATGG 60.287 50.000 0.00 0.00 0.00 3.66
330 331 2.947652 CGATGAAGAAATGAGGCATGGT 59.052 45.455 0.00 0.00 0.00 3.55
331 332 3.003068 CGATGAAGAAATGAGGCATGGTC 59.997 47.826 0.00 0.00 0.00 4.02
332 333 3.726557 TGAAGAAATGAGGCATGGTCT 57.273 42.857 0.00 0.00 0.00 3.85
333 334 4.038271 TGAAGAAATGAGGCATGGTCTT 57.962 40.909 0.00 0.00 34.13 3.01
334 335 5.178096 TGAAGAAATGAGGCATGGTCTTA 57.822 39.130 0.00 0.00 32.67 2.10
335 336 5.188434 TGAAGAAATGAGGCATGGTCTTAG 58.812 41.667 0.00 0.00 32.67 2.18
336 337 5.045651 TGAAGAAATGAGGCATGGTCTTAGA 60.046 40.000 0.00 0.00 32.67 2.10
337 338 5.033589 AGAAATGAGGCATGGTCTTAGAG 57.966 43.478 0.00 0.00 0.00 2.43
338 339 4.718774 AGAAATGAGGCATGGTCTTAGAGA 59.281 41.667 0.00 0.00 0.00 3.10
339 340 4.686191 AATGAGGCATGGTCTTAGAGAG 57.314 45.455 0.00 0.00 0.00 3.20
340 341 3.107402 TGAGGCATGGTCTTAGAGAGT 57.893 47.619 0.00 0.00 0.00 3.24
341 342 2.762887 TGAGGCATGGTCTTAGAGAGTG 59.237 50.000 0.00 0.00 0.00 3.51
342 343 1.484240 AGGCATGGTCTTAGAGAGTGC 59.516 52.381 0.00 4.68 31.48 4.40
343 344 1.484240 GGCATGGTCTTAGAGAGTGCT 59.516 52.381 10.83 0.00 32.33 4.40
344 345 2.695666 GGCATGGTCTTAGAGAGTGCTA 59.304 50.000 10.83 0.00 32.33 3.49
345 346 3.243704 GGCATGGTCTTAGAGAGTGCTAG 60.244 52.174 10.83 0.00 32.33 3.42
346 347 3.383185 GCATGGTCTTAGAGAGTGCTAGT 59.617 47.826 0.00 0.00 30.38 2.57
347 348 4.736168 GCATGGTCTTAGAGAGTGCTAGTG 60.736 50.000 0.00 0.00 30.38 2.74
348 349 4.302559 TGGTCTTAGAGAGTGCTAGTGA 57.697 45.455 0.00 0.00 0.00 3.41
349 350 4.861196 TGGTCTTAGAGAGTGCTAGTGAT 58.139 43.478 0.00 0.00 0.00 3.06
350 351 4.642437 TGGTCTTAGAGAGTGCTAGTGATG 59.358 45.833 0.00 0.00 0.00 3.07
351 352 4.884744 GGTCTTAGAGAGTGCTAGTGATGA 59.115 45.833 0.00 0.00 0.00 2.92
352 353 5.358442 GGTCTTAGAGAGTGCTAGTGATGAA 59.642 44.000 0.00 0.00 0.00 2.57
353 354 6.127591 GGTCTTAGAGAGTGCTAGTGATGAAA 60.128 42.308 0.00 0.00 0.00 2.69
354 355 7.417342 GGTCTTAGAGAGTGCTAGTGATGAAAT 60.417 40.741 0.00 0.00 0.00 2.17
355 356 7.647715 GTCTTAGAGAGTGCTAGTGATGAAATC 59.352 40.741 0.00 0.00 45.83 2.17
370 371 4.226427 TGAAATCATCTCCACAGGAAGG 57.774 45.455 0.00 0.00 0.00 3.46
371 372 3.054139 TGAAATCATCTCCACAGGAAGGG 60.054 47.826 0.00 0.00 0.00 3.95
372 373 2.277008 ATCATCTCCACAGGAAGGGT 57.723 50.000 0.00 0.00 0.00 4.34
373 374 1.279496 TCATCTCCACAGGAAGGGTG 58.721 55.000 0.00 0.00 36.03 4.61
388 389 2.928416 GGTGGCGCCCATATCTAAC 58.072 57.895 26.77 12.70 35.28 2.34
389 390 0.949105 GGTGGCGCCCATATCTAACG 60.949 60.000 26.77 0.00 35.28 3.18
390 391 0.249741 GTGGCGCCCATATCTAACGT 60.250 55.000 26.77 0.00 35.28 3.99
391 392 0.249699 TGGCGCCCATATCTAACGTG 60.250 55.000 26.77 0.00 0.00 4.49
392 393 0.949105 GGCGCCCATATCTAACGTGG 60.949 60.000 18.11 0.00 0.00 4.94
393 394 0.032952 GCGCCCATATCTAACGTGGA 59.967 55.000 0.00 0.00 34.94 4.02
394 395 1.935300 GCGCCCATATCTAACGTGGAG 60.935 57.143 0.00 0.00 34.94 3.86
395 396 1.340248 CGCCCATATCTAACGTGGAGT 59.660 52.381 0.00 0.00 34.94 3.85
396 397 2.755650 GCCCATATCTAACGTGGAGTG 58.244 52.381 0.00 0.00 34.94 3.51
397 398 2.102588 GCCCATATCTAACGTGGAGTGT 59.897 50.000 0.00 0.00 34.94 3.55
398 399 3.319972 GCCCATATCTAACGTGGAGTGTA 59.680 47.826 0.00 0.00 34.94 2.90
399 400 4.202182 GCCCATATCTAACGTGGAGTGTAA 60.202 45.833 0.00 0.00 34.94 2.41
400 401 5.682990 GCCCATATCTAACGTGGAGTGTAAA 60.683 44.000 0.00 0.00 34.94 2.01
401 402 5.751990 CCCATATCTAACGTGGAGTGTAAAC 59.248 44.000 0.00 0.00 34.94 2.01
402 403 5.457799 CCATATCTAACGTGGAGTGTAAACG 59.542 44.000 0.00 0.00 42.82 3.60
403 404 4.771590 ATCTAACGTGGAGTGTAAACGA 57.228 40.909 0.97 0.00 39.64 3.85
404 405 4.566545 TCTAACGTGGAGTGTAAACGAA 57.433 40.909 0.97 0.00 39.64 3.85
405 406 4.539870 TCTAACGTGGAGTGTAAACGAAG 58.460 43.478 0.97 0.00 39.64 3.79
406 407 2.144482 ACGTGGAGTGTAAACGAAGG 57.856 50.000 0.97 0.00 39.64 3.46
407 408 1.269936 ACGTGGAGTGTAAACGAAGGG 60.270 52.381 0.97 0.00 39.64 3.95
408 409 1.154197 GTGGAGTGTAAACGAAGGGC 58.846 55.000 0.00 0.00 0.00 5.19
409 410 0.759959 TGGAGTGTAAACGAAGGGCA 59.240 50.000 0.00 0.00 0.00 5.36
410 411 1.154197 GGAGTGTAAACGAAGGGCAC 58.846 55.000 0.00 0.00 0.00 5.01
411 412 1.270678 GGAGTGTAAACGAAGGGCACT 60.271 52.381 0.00 0.00 42.29 4.40
412 413 1.798813 GAGTGTAAACGAAGGGCACTG 59.201 52.381 0.00 0.00 40.06 3.66
413 414 0.237498 GTGTAAACGAAGGGCACTGC 59.763 55.000 0.00 0.00 0.00 4.40
414 415 0.179043 TGTAAACGAAGGGCACTGCA 60.179 50.000 2.82 0.00 0.00 4.41
415 416 0.237498 GTAAACGAAGGGCACTGCAC 59.763 55.000 2.82 0.00 0.00 4.57
416 417 0.179043 TAAACGAAGGGCACTGCACA 60.179 50.000 5.94 0.00 32.33 4.57
417 418 1.447317 AAACGAAGGGCACTGCACAG 61.447 55.000 5.94 0.00 32.33 3.66
418 419 3.730761 CGAAGGGCACTGCACAGC 61.731 66.667 5.94 0.00 32.33 4.40
419 420 2.595463 GAAGGGCACTGCACAGCA 60.595 61.111 5.94 0.00 32.33 4.41
420 421 2.123769 AAGGGCACTGCACAGCAA 60.124 55.556 5.94 0.00 38.41 3.91
421 422 2.412037 GAAGGGCACTGCACAGCAAC 62.412 60.000 5.94 0.81 38.41 4.17
422 423 4.332637 GGGCACTGCACAGCAACG 62.333 66.667 2.82 0.00 38.41 4.10
423 424 3.279116 GGCACTGCACAGCAACGA 61.279 61.111 2.82 0.00 38.41 3.85
424 425 2.051882 GCACTGCACAGCAACGAC 60.052 61.111 0.00 0.00 38.41 4.34
425 426 2.822758 GCACTGCACAGCAACGACA 61.823 57.895 0.00 0.00 38.41 4.35
426 427 1.720894 CACTGCACAGCAACGACAA 59.279 52.632 0.00 0.00 38.41 3.18
427 428 0.589729 CACTGCACAGCAACGACAAC 60.590 55.000 0.00 0.00 38.41 3.32
428 429 1.024046 ACTGCACAGCAACGACAACA 61.024 50.000 0.00 0.00 38.41 3.33
429 430 0.098552 CTGCACAGCAACGACAACAA 59.901 50.000 0.00 0.00 38.41 2.83
430 431 0.179176 TGCACAGCAACGACAACAAC 60.179 50.000 0.00 0.00 34.76 3.32
431 432 0.179176 GCACAGCAACGACAACAACA 60.179 50.000 0.00 0.00 0.00 3.33
432 433 1.813896 CACAGCAACGACAACAACAG 58.186 50.000 0.00 0.00 0.00 3.16
433 434 0.098728 ACAGCAACGACAACAACAGC 59.901 50.000 0.00 0.00 0.00 4.40
438 439 1.910819 CAACGACAACAACAGCAACAC 59.089 47.619 0.00 0.00 0.00 3.32
455 456 2.261361 CGAGCACCACATGACGGA 59.739 61.111 12.07 0.00 0.00 4.69
563 564 1.153249 ATGCCGGGACCACATAACG 60.153 57.895 2.18 0.00 0.00 3.18
621 630 5.964758 ACATTTGTTGTGATCTTGTTGTGT 58.035 33.333 0.00 0.00 37.11 3.72
639 650 6.529829 TGTTGTGTTTGCTTGTTATTTGAGAC 59.470 34.615 0.00 0.00 0.00 3.36
646 657 3.125316 GCTTGTTATTTGAGACCCGTCAG 59.875 47.826 0.00 0.00 0.00 3.51
668 679 3.438434 GCATCAAAGACAGGGAGAGAAAC 59.562 47.826 0.00 0.00 0.00 2.78
683 694 1.273886 AGAAACAGAGGCGAGGAAGAC 59.726 52.381 0.00 0.00 0.00 3.01
711 722 1.746470 CCGTCAAAACCATACTCCCC 58.254 55.000 0.00 0.00 0.00 4.81
712 723 1.680860 CCGTCAAAACCATACTCCCCC 60.681 57.143 0.00 0.00 0.00 5.40
713 724 1.003812 CGTCAAAACCATACTCCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
714 725 2.723273 GTCAAAACCATACTCCCCCAG 58.277 52.381 0.00 0.00 0.00 4.45
715 726 1.638589 TCAAAACCATACTCCCCCAGG 59.361 52.381 0.00 0.00 0.00 4.45
716 727 1.007607 AAAACCATACTCCCCCAGGG 58.992 55.000 0.00 0.00 46.11 4.45
741 752 2.435586 CCAGGAGCGCTTGACCAG 60.436 66.667 13.26 5.05 0.00 4.00
781 792 4.755123 CCAAAAGTTGACCGTTATCTCACT 59.245 41.667 0.00 0.00 0.00 3.41
822 837 1.977544 ACCTCGACTTGCTACCGCT 60.978 57.895 0.00 0.00 36.97 5.52
869 884 0.679505 CAACCTCGTCTCAACTCCCA 59.320 55.000 0.00 0.00 0.00 4.37
871 886 0.178958 ACCTCGTCTCAACTCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
912 928 2.472029 CCTGACCTGGTCCATCTTACT 58.528 52.381 23.42 0.00 0.00 2.24
954 970 2.355837 TCACTCGTGCCTCGCAAC 60.356 61.111 0.00 0.00 41.47 4.17
955 971 3.414700 CACTCGTGCCTCGCAACC 61.415 66.667 0.00 0.00 41.47 3.77
956 972 4.681978 ACTCGTGCCTCGCAACCC 62.682 66.667 0.00 0.00 41.47 4.11
957 973 4.379243 CTCGTGCCTCGCAACCCT 62.379 66.667 0.00 0.00 41.47 4.34
958 974 3.883744 CTCGTGCCTCGCAACCCTT 62.884 63.158 0.00 0.00 41.47 3.95
1012 1037 3.671928 GCGCCGTCTCGTATATAAACATT 59.328 43.478 0.00 0.00 0.00 2.71
1013 1038 4.432503 GCGCCGTCTCGTATATAAACATTG 60.433 45.833 0.00 0.00 0.00 2.82
1038 1063 1.686566 CGGCTAGCATCACACACACG 61.687 60.000 18.24 2.52 0.00 4.49
1107 1136 0.237498 GAGAAAACCGACCAAAGGCG 59.763 55.000 0.00 0.00 0.00 5.52
1108 1137 1.371267 GAAAACCGACCAAAGGCGC 60.371 57.895 0.00 0.00 0.00 6.53
1109 1138 2.742710 GAAAACCGACCAAAGGCGCC 62.743 60.000 21.89 21.89 0.00 6.53
1138 1169 3.094058 CCGCGCTCGATCGATCAC 61.094 66.667 24.40 7.64 38.10 3.06
1139 1170 3.094058 CGCGCTCGATCGATCACC 61.094 66.667 24.40 10.85 38.10 4.02
1554 1703 7.336931 CCCTATTGAAGTGCAAGTGTAAATACT 59.663 37.037 0.00 0.00 40.42 2.12
1555 1704 9.378551 CCTATTGAAGTGCAAGTGTAAATACTA 57.621 33.333 0.00 0.00 40.42 1.82
1592 1896 3.381045 GGTGTTAAAGTTCAGCCTTTGC 58.619 45.455 0.00 0.00 36.18 3.68
1625 1929 4.453478 CAGCAGCATTTGTAAGAGACTTGA 59.547 41.667 0.00 0.00 0.00 3.02
1669 1973 7.447374 TGTAAAGTTGTAATCATTGTGGGAG 57.553 36.000 0.00 0.00 0.00 4.30
1708 2016 4.636435 ACGTCCGGGGCCTGTTTG 62.636 66.667 12.30 2.41 0.00 2.93
1716 2024 0.953960 GGGGCCTGTTTGTACTCGTG 60.954 60.000 0.84 0.00 0.00 4.35
1756 2064 2.054799 GCTAGAGGAGAGGAGAGGAGA 58.945 57.143 0.00 0.00 0.00 3.71
1757 2065 2.039084 GCTAGAGGAGAGGAGAGGAGAG 59.961 59.091 0.00 0.00 0.00 3.20
1758 2066 1.522900 AGAGGAGAGGAGAGGAGAGG 58.477 60.000 0.00 0.00 0.00 3.69
1759 2067 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
1760 2068 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
1761 2069 0.478507 GGAGAGGAGAGGAGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
1763 2071 0.923729 AGAGGAGAGGAGAGGAGGCA 60.924 60.000 0.00 0.00 0.00 4.75
1765 2073 2.124693 GGAGAGGAGAGGAGGCACG 61.125 68.421 0.00 0.00 0.00 5.34
1766 2074 1.077357 GAGAGGAGAGGAGGCACGA 60.077 63.158 0.00 0.00 0.00 4.35
1767 2075 1.077068 AGAGGAGAGGAGGCACGAG 60.077 63.158 0.00 0.00 0.00 4.18
1776 2232 3.692101 AGAGGAGGCACGAGATATATTCG 59.308 47.826 12.67 12.67 43.38 3.34
1793 2249 2.753966 CGACATTTGCCTGGGAGCG 61.754 63.158 0.00 0.00 34.65 5.03
1806 2262 3.818773 CCTGGGAGCGTTTTCTTTTTCTA 59.181 43.478 0.00 0.00 0.00 2.10
1813 2270 5.511571 AGCGTTTTCTTTTTCTAAGACAGC 58.488 37.500 0.00 0.00 0.00 4.40
1815 2272 5.732247 GCGTTTTCTTTTTCTAAGACAGCCA 60.732 40.000 0.00 0.00 0.00 4.75
1831 2288 3.094572 CAGCCAGGTGATTGATCCTTTT 58.905 45.455 0.00 0.00 30.91 2.27
1851 2308 3.169198 CCGAGTTTTGCGGCTCTC 58.831 61.111 0.00 3.61 42.55 3.20
1866 2323 2.433239 GGCTCTCTAATTTGGACCGGTA 59.567 50.000 7.34 0.00 0.00 4.02
1872 2329 5.246656 TCTCTAATTTGGACCGGTAACAGAA 59.753 40.000 7.34 7.81 0.00 3.02
1876 2333 0.035739 TGGACCGGTAACAGAAAGGC 59.964 55.000 7.34 0.00 0.00 4.35
1906 2363 4.338964 TGAAATATGCATGATTCGCTTGGT 59.661 37.500 10.16 0.00 0.00 3.67
1912 2369 2.874701 GCATGATTCGCTTGGTACTCAT 59.125 45.455 0.00 0.00 0.00 2.90
1928 2385 6.607600 TGGTACTCATACTCTCTTATTGCACT 59.392 38.462 0.00 0.00 0.00 4.40
1950 2407 5.072872 ACTGCTAATTTCTGCCCATCTCTAT 59.927 40.000 0.00 0.00 0.00 1.98
1954 2411 7.998383 TGCTAATTTCTGCCCATCTCTATAAAA 59.002 33.333 0.00 0.00 0.00 1.52
1963 2420 6.183361 TGCCCATCTCTATAAAACTACAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
1979 2436 1.620413 GCATCGCAAACCAAAGCTGC 61.620 55.000 0.00 0.00 0.00 5.25
2046 2503 2.045561 TTTTCAGTTGGTCGAAGGCA 57.954 45.000 0.00 0.00 0.00 4.75
2050 2507 1.066430 TCAGTTGGTCGAAGGCATACC 60.066 52.381 0.00 0.00 0.00 2.73
2058 2515 1.546923 TCGAAGGCATACCGTGAAAGA 59.453 47.619 0.00 0.00 42.76 2.52
2065 2522 4.161565 AGGCATACCGTGAAAGATGTCTTA 59.838 41.667 0.00 0.00 42.76 2.10
2066 2523 4.508124 GGCATACCGTGAAAGATGTCTTAG 59.492 45.833 0.00 0.00 34.61 2.18
2067 2524 5.348986 GCATACCGTGAAAGATGTCTTAGA 58.651 41.667 0.00 0.00 34.61 2.10
2073 2530 5.926542 CCGTGAAAGATGTCTTAGAGAACAA 59.073 40.000 0.00 0.00 34.61 2.83
2083 2540 7.969536 TGTCTTAGAGAACAAGGAAATTCAG 57.030 36.000 0.00 0.00 0.00 3.02
2085 2542 6.372937 GTCTTAGAGAACAAGGAAATTCAGGG 59.627 42.308 0.00 0.00 0.00 4.45
2086 2543 4.039603 AGAGAACAAGGAAATTCAGGGG 57.960 45.455 0.00 0.00 0.00 4.79
2087 2544 3.092301 GAGAACAAGGAAATTCAGGGGG 58.908 50.000 0.00 0.00 0.00 5.40
2117 2576 8.862325 TCACACACAAGAAACATATATTTCCT 57.138 30.769 2.82 0.00 39.05 3.36
2118 2577 9.952030 TCACACACAAGAAACATATATTTCCTA 57.048 29.630 2.82 0.00 39.05 2.94
2119 2578 9.988350 CACACACAAGAAACATATATTTCCTAC 57.012 33.333 2.82 0.00 39.05 3.18
2315 2825 3.897141 TCACCAAGTACAACACACAGA 57.103 42.857 0.00 0.00 0.00 3.41
2343 2853 5.530171 ACATACTCTACCCAGTACATACACG 59.470 44.000 0.00 0.00 31.53 4.49
2344 2854 3.285484 ACTCTACCCAGTACATACACGG 58.715 50.000 0.00 0.00 0.00 4.94
2345 2855 3.054139 ACTCTACCCAGTACATACACGGA 60.054 47.826 0.00 0.00 0.00 4.69
2346 2856 4.142790 CTCTACCCAGTACATACACGGAT 58.857 47.826 0.00 0.00 0.00 4.18
2347 2857 5.163163 ACTCTACCCAGTACATACACGGATA 60.163 44.000 0.00 0.00 0.00 2.59
2348 2858 5.065914 TCTACCCAGTACATACACGGATAC 58.934 45.833 0.00 0.00 0.00 2.24
2349 2859 3.634504 ACCCAGTACATACACGGATACA 58.365 45.455 0.00 0.00 0.00 2.29
2350 2860 3.382546 ACCCAGTACATACACGGATACAC 59.617 47.826 0.00 0.00 0.00 2.90
2428 2939 2.384203 CGACATCGCCTTCCTTTCC 58.616 57.895 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.371115 AACTACCACAATTCATGAAACCG 57.629 39.130 13.09 6.41 0.00 4.44
1 2 7.042119 CCAAAAACTACCACAATTCATGAAACC 60.042 37.037 13.09 0.00 0.00 3.27
2 3 7.494298 ACCAAAAACTACCACAATTCATGAAAC 59.506 33.333 13.09 0.00 0.00 2.78
3 4 7.560368 ACCAAAAACTACCACAATTCATGAAA 58.440 30.769 13.09 0.00 0.00 2.69
4 5 7.118496 ACCAAAAACTACCACAATTCATGAA 57.882 32.000 11.26 11.26 0.00 2.57
5 6 6.723298 ACCAAAAACTACCACAATTCATGA 57.277 33.333 0.00 0.00 0.00 3.07
6 7 8.879342 TTAACCAAAAACTACCACAATTCATG 57.121 30.769 0.00 0.00 0.00 3.07
12 13 8.631797 GGAGTATTTAACCAAAAACTACCACAA 58.368 33.333 0.00 0.00 0.00 3.33
13 14 7.041235 CGGAGTATTTAACCAAAAACTACCACA 60.041 37.037 0.00 0.00 0.00 4.17
14 15 7.300320 CGGAGTATTTAACCAAAAACTACCAC 58.700 38.462 0.00 0.00 0.00 4.16
15 16 6.430616 CCGGAGTATTTAACCAAAAACTACCA 59.569 38.462 0.00 0.00 0.00 3.25
16 17 6.623549 GCCGGAGTATTTAACCAAAAACTACC 60.624 42.308 5.05 0.00 0.00 3.18
17 18 6.149973 AGCCGGAGTATTTAACCAAAAACTAC 59.850 38.462 5.05 0.00 0.00 2.73
18 19 6.149807 CAGCCGGAGTATTTAACCAAAAACTA 59.850 38.462 5.05 0.00 0.00 2.24
19 20 5.048294 CAGCCGGAGTATTTAACCAAAAACT 60.048 40.000 5.05 0.00 0.00 2.66
20 21 5.048573 TCAGCCGGAGTATTTAACCAAAAAC 60.049 40.000 5.05 0.00 0.00 2.43
21 22 5.071370 TCAGCCGGAGTATTTAACCAAAAA 58.929 37.500 5.05 0.00 0.00 1.94
22 23 4.653868 TCAGCCGGAGTATTTAACCAAAA 58.346 39.130 5.05 0.00 0.00 2.44
23 24 4.258543 CTCAGCCGGAGTATTTAACCAAA 58.741 43.478 5.05 0.00 38.90 3.28
24 25 3.370103 CCTCAGCCGGAGTATTTAACCAA 60.370 47.826 5.05 0.00 42.40 3.67
25 26 2.169769 CCTCAGCCGGAGTATTTAACCA 59.830 50.000 5.05 0.00 42.40 3.67
26 27 2.169978 ACCTCAGCCGGAGTATTTAACC 59.830 50.000 5.05 0.00 42.40 2.85
27 28 3.538634 ACCTCAGCCGGAGTATTTAAC 57.461 47.619 5.05 0.00 42.40 2.01
28 29 5.129815 ACATAACCTCAGCCGGAGTATTTAA 59.870 40.000 5.05 0.00 42.40 1.52
29 30 4.652421 ACATAACCTCAGCCGGAGTATTTA 59.348 41.667 5.05 0.00 42.40 1.40
30 31 3.454812 ACATAACCTCAGCCGGAGTATTT 59.545 43.478 5.05 0.00 42.40 1.40
31 32 3.039011 ACATAACCTCAGCCGGAGTATT 58.961 45.455 5.05 0.00 42.40 1.89
32 33 2.365617 CACATAACCTCAGCCGGAGTAT 59.634 50.000 5.05 0.00 42.40 2.12
33 34 1.754803 CACATAACCTCAGCCGGAGTA 59.245 52.381 5.05 0.00 42.40 2.59
34 35 0.537188 CACATAACCTCAGCCGGAGT 59.463 55.000 5.05 0.00 42.40 3.85
35 36 0.824109 TCACATAACCTCAGCCGGAG 59.176 55.000 5.05 0.00 43.65 4.63
36 37 0.824109 CTCACATAACCTCAGCCGGA 59.176 55.000 5.05 0.00 0.00 5.14
37 38 0.179073 CCTCACATAACCTCAGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
38 39 0.824109 TCCTCACATAACCTCAGCCG 59.176 55.000 0.00 0.00 0.00 5.52
39 40 2.435805 TGATCCTCACATAACCTCAGCC 59.564 50.000 0.00 0.00 0.00 4.85
40 41 3.827008 TGATCCTCACATAACCTCAGC 57.173 47.619 0.00 0.00 0.00 4.26
41 42 6.662865 ACTATGATCCTCACATAACCTCAG 57.337 41.667 0.00 0.00 31.26 3.35
42 43 7.066781 TGTACTATGATCCTCACATAACCTCA 58.933 38.462 0.00 0.00 31.26 3.86
43 44 7.309499 CCTGTACTATGATCCTCACATAACCTC 60.309 44.444 0.00 0.00 31.26 3.85
44 45 6.495181 CCTGTACTATGATCCTCACATAACCT 59.505 42.308 0.00 0.00 31.26 3.50
45 46 6.295349 CCCTGTACTATGATCCTCACATAACC 60.295 46.154 0.00 0.00 31.26 2.85
46 47 6.692486 CCCTGTACTATGATCCTCACATAAC 58.308 44.000 0.00 0.00 31.26 1.89
47 48 5.246203 GCCCTGTACTATGATCCTCACATAA 59.754 44.000 0.00 0.00 31.26 1.90
48 49 4.772624 GCCCTGTACTATGATCCTCACATA 59.227 45.833 0.00 0.00 0.00 2.29
49 50 3.580458 GCCCTGTACTATGATCCTCACAT 59.420 47.826 0.00 0.00 0.00 3.21
50 51 2.965831 GCCCTGTACTATGATCCTCACA 59.034 50.000 0.00 0.00 0.00 3.58
51 52 2.965831 TGCCCTGTACTATGATCCTCAC 59.034 50.000 0.00 0.00 0.00 3.51
52 53 3.328535 TGCCCTGTACTATGATCCTCA 57.671 47.619 0.00 0.00 0.00 3.86
53 54 3.388024 TGTTGCCCTGTACTATGATCCTC 59.612 47.826 0.00 0.00 0.00 3.71
54 55 3.134804 GTGTTGCCCTGTACTATGATCCT 59.865 47.826 0.00 0.00 0.00 3.24
55 56 3.134804 AGTGTTGCCCTGTACTATGATCC 59.865 47.826 0.00 0.00 0.00 3.36
56 57 4.141937 TGAGTGTTGCCCTGTACTATGATC 60.142 45.833 0.00 0.00 0.00 2.92
57 58 3.774766 TGAGTGTTGCCCTGTACTATGAT 59.225 43.478 0.00 0.00 0.00 2.45
58 59 3.056107 GTGAGTGTTGCCCTGTACTATGA 60.056 47.826 0.00 0.00 0.00 2.15
59 60 3.262420 GTGAGTGTTGCCCTGTACTATG 58.738 50.000 0.00 0.00 0.00 2.23
60 61 2.903784 TGTGAGTGTTGCCCTGTACTAT 59.096 45.455 0.00 0.00 0.00 2.12
61 62 2.321719 TGTGAGTGTTGCCCTGTACTA 58.678 47.619 0.00 0.00 0.00 1.82
62 63 1.128200 TGTGAGTGTTGCCCTGTACT 58.872 50.000 0.00 0.00 0.00 2.73
63 64 2.185004 ATGTGAGTGTTGCCCTGTAC 57.815 50.000 0.00 0.00 0.00 2.90
64 65 3.169908 TCTATGTGAGTGTTGCCCTGTA 58.830 45.455 0.00 0.00 0.00 2.74
65 66 1.977854 TCTATGTGAGTGTTGCCCTGT 59.022 47.619 0.00 0.00 0.00 4.00
66 67 2.625737 CTCTATGTGAGTGTTGCCCTG 58.374 52.381 0.00 0.00 37.99 4.45
67 68 1.556911 CCTCTATGTGAGTGTTGCCCT 59.443 52.381 0.00 0.00 41.11 5.19
68 69 1.407437 CCCTCTATGTGAGTGTTGCCC 60.407 57.143 0.00 0.00 41.11 5.36
69 70 1.407437 CCCCTCTATGTGAGTGTTGCC 60.407 57.143 0.00 0.00 41.11 4.52
70 71 1.407437 CCCCCTCTATGTGAGTGTTGC 60.407 57.143 0.00 0.00 41.11 4.17
71 72 2.698855 CCCCCTCTATGTGAGTGTTG 57.301 55.000 0.00 0.00 41.11 3.33
87 88 0.679505 GTCTTTTGGAGTTTGCCCCC 59.320 55.000 0.00 0.00 0.00 5.40
88 89 1.068588 GTGTCTTTTGGAGTTTGCCCC 59.931 52.381 0.00 0.00 0.00 5.80
89 90 1.068588 GGTGTCTTTTGGAGTTTGCCC 59.931 52.381 0.00 0.00 0.00 5.36
90 91 1.754226 TGGTGTCTTTTGGAGTTTGCC 59.246 47.619 0.00 0.00 0.00 4.52
91 92 2.165437 TGTGGTGTCTTTTGGAGTTTGC 59.835 45.455 0.00 0.00 0.00 3.68
92 93 4.097741 TCATGTGGTGTCTTTTGGAGTTTG 59.902 41.667 0.00 0.00 0.00 2.93
93 94 4.277476 TCATGTGGTGTCTTTTGGAGTTT 58.723 39.130 0.00 0.00 0.00 2.66
94 95 3.885297 CTCATGTGGTGTCTTTTGGAGTT 59.115 43.478 0.00 0.00 0.00 3.01
95 96 3.136443 TCTCATGTGGTGTCTTTTGGAGT 59.864 43.478 0.00 0.00 0.00 3.85
96 97 3.743521 TCTCATGTGGTGTCTTTTGGAG 58.256 45.455 0.00 0.00 0.00 3.86
97 98 3.743521 CTCTCATGTGGTGTCTTTTGGA 58.256 45.455 0.00 0.00 0.00 3.53
98 99 2.227388 GCTCTCATGTGGTGTCTTTTGG 59.773 50.000 0.00 0.00 0.00 3.28
99 100 3.144506 AGCTCTCATGTGGTGTCTTTTG 58.855 45.455 0.00 0.00 0.00 2.44
100 101 3.072184 AGAGCTCTCATGTGGTGTCTTTT 59.928 43.478 11.45 0.00 0.00 2.27
101 102 2.636893 AGAGCTCTCATGTGGTGTCTTT 59.363 45.455 11.45 0.00 0.00 2.52
102 103 2.028294 CAGAGCTCTCATGTGGTGTCTT 60.028 50.000 14.96 0.00 0.00 3.01
103 104 1.549620 CAGAGCTCTCATGTGGTGTCT 59.450 52.381 14.96 0.00 0.00 3.41
104 105 1.547820 TCAGAGCTCTCATGTGGTGTC 59.452 52.381 14.96 0.00 0.00 3.67
105 106 1.637338 TCAGAGCTCTCATGTGGTGT 58.363 50.000 14.96 0.00 0.00 4.16
106 107 2.983907 ATCAGAGCTCTCATGTGGTG 57.016 50.000 14.96 0.53 0.00 4.17
107 108 4.202336 CCATTATCAGAGCTCTCATGTGGT 60.202 45.833 14.96 1.56 0.00 4.16
108 109 4.316645 CCATTATCAGAGCTCTCATGTGG 58.683 47.826 14.96 15.52 0.00 4.17
109 110 3.747010 GCCATTATCAGAGCTCTCATGTG 59.253 47.826 14.96 10.33 0.00 3.21
110 111 3.390311 TGCCATTATCAGAGCTCTCATGT 59.610 43.478 14.96 2.56 0.00 3.21
111 112 4.004196 TGCCATTATCAGAGCTCTCATG 57.996 45.455 14.96 13.08 0.00 3.07
112 113 4.701651 TTGCCATTATCAGAGCTCTCAT 57.298 40.909 14.96 9.86 0.00 2.90
113 114 4.386711 CATTGCCATTATCAGAGCTCTCA 58.613 43.478 14.96 0.00 0.00 3.27
114 115 3.188873 GCATTGCCATTATCAGAGCTCTC 59.811 47.826 14.96 0.00 0.00 3.20
115 116 3.147629 GCATTGCCATTATCAGAGCTCT 58.852 45.455 11.45 11.45 0.00 4.09
116 117 3.555917 GCATTGCCATTATCAGAGCTC 57.444 47.619 5.27 5.27 0.00 4.09
129 130 2.261361 GGTGGTTTCGGCATTGCC 59.739 61.111 18.10 18.10 46.75 4.52
130 131 2.126502 CGGTGGTTTCGGCATTGC 60.127 61.111 0.00 0.00 0.00 3.56
131 132 2.566010 CCGGTGGTTTCGGCATTG 59.434 61.111 0.00 0.00 41.07 2.82
137 138 1.281656 GTCTTTGCCGGTGGTTTCG 59.718 57.895 1.90 0.00 0.00 3.46
138 139 1.104577 TGGTCTTTGCCGGTGGTTTC 61.105 55.000 1.90 0.00 0.00 2.78
139 140 1.076632 TGGTCTTTGCCGGTGGTTT 60.077 52.632 1.90 0.00 0.00 3.27
140 141 1.826487 GTGGTCTTTGCCGGTGGTT 60.826 57.895 1.90 0.00 0.00 3.67
141 142 2.203294 GTGGTCTTTGCCGGTGGT 60.203 61.111 1.90 0.00 0.00 4.16
142 143 2.203280 TGTGGTCTTTGCCGGTGG 60.203 61.111 1.90 0.00 0.00 4.61
143 144 1.227823 TCTGTGGTCTTTGCCGGTG 60.228 57.895 1.90 0.00 0.00 4.94
144 145 1.227853 GTCTGTGGTCTTTGCCGGT 60.228 57.895 1.90 0.00 0.00 5.28
145 146 1.227823 TGTCTGTGGTCTTTGCCGG 60.228 57.895 0.00 0.00 0.00 6.13
146 147 0.532862 ACTGTCTGTGGTCTTTGCCG 60.533 55.000 0.00 0.00 0.00 5.69
147 148 1.230324 GACTGTCTGTGGTCTTTGCC 58.770 55.000 0.00 0.00 0.00 4.52
148 149 1.953559 TGACTGTCTGTGGTCTTTGC 58.046 50.000 9.51 0.00 34.01 3.68
149 150 5.934043 TCATAATGACTGTCTGTGGTCTTTG 59.066 40.000 9.51 0.00 33.79 2.77
150 151 6.114187 TCATAATGACTGTCTGTGGTCTTT 57.886 37.500 9.51 0.00 35.24 2.52
151 152 5.745312 TCATAATGACTGTCTGTGGTCTT 57.255 39.130 9.51 0.00 34.01 3.01
152 153 5.337894 CCTTCATAATGACTGTCTGTGGTCT 60.338 44.000 9.51 0.00 34.01 3.85
153 154 4.872691 CCTTCATAATGACTGTCTGTGGTC 59.127 45.833 9.51 0.00 0.00 4.02
154 155 4.532126 TCCTTCATAATGACTGTCTGTGGT 59.468 41.667 9.51 0.00 0.00 4.16
155 156 5.089970 TCCTTCATAATGACTGTCTGTGG 57.910 43.478 9.51 6.37 0.00 4.17
156 157 4.569966 GCTCCTTCATAATGACTGTCTGTG 59.430 45.833 9.51 0.00 0.00 3.66
157 158 4.469227 AGCTCCTTCATAATGACTGTCTGT 59.531 41.667 9.51 0.00 0.00 3.41
158 159 5.021033 AGCTCCTTCATAATGACTGTCTG 57.979 43.478 9.51 0.00 0.00 3.51
159 160 5.221145 CGTAGCTCCTTCATAATGACTGTCT 60.221 44.000 9.51 0.00 0.00 3.41
160 161 4.979197 CGTAGCTCCTTCATAATGACTGTC 59.021 45.833 0.00 0.00 0.00 3.51
161 162 4.938080 CGTAGCTCCTTCATAATGACTGT 58.062 43.478 0.00 0.00 0.00 3.55
179 180 2.746277 GGGTTGGCAGTGGCGTAG 60.746 66.667 12.58 0.00 42.47 3.51
180 181 4.338710 GGGGTTGGCAGTGGCGTA 62.339 66.667 12.58 0.00 42.47 4.42
198 199 3.286751 TCCCTGTTTGCACGCTGC 61.287 61.111 0.00 3.44 45.29 5.25
199 200 2.639286 GTCCCTGTTTGCACGCTG 59.361 61.111 0.00 0.00 0.00 5.18
200 201 2.972505 CGTCCCTGTTTGCACGCT 60.973 61.111 0.00 0.00 0.00 5.07
201 202 3.276846 ACGTCCCTGTTTGCACGC 61.277 61.111 0.00 0.00 35.64 5.34
202 203 2.631428 CACGTCCCTGTTTGCACG 59.369 61.111 0.00 0.00 38.24 5.34
203 204 1.098712 TTCCACGTCCCTGTTTGCAC 61.099 55.000 0.00 0.00 0.00 4.57
204 205 0.817634 CTTCCACGTCCCTGTTTGCA 60.818 55.000 0.00 0.00 0.00 4.08
205 206 0.534203 TCTTCCACGTCCCTGTTTGC 60.534 55.000 0.00 0.00 0.00 3.68
206 207 2.185004 ATCTTCCACGTCCCTGTTTG 57.815 50.000 0.00 0.00 0.00 2.93
207 208 2.372172 AGAATCTTCCACGTCCCTGTTT 59.628 45.455 0.00 0.00 0.00 2.83
208 209 1.978580 AGAATCTTCCACGTCCCTGTT 59.021 47.619 0.00 0.00 0.00 3.16
209 210 1.645710 AGAATCTTCCACGTCCCTGT 58.354 50.000 0.00 0.00 0.00 4.00
210 211 3.887621 TTAGAATCTTCCACGTCCCTG 57.112 47.619 0.00 0.00 0.00 4.45
211 212 4.441634 CGAATTAGAATCTTCCACGTCCCT 60.442 45.833 0.00 0.00 0.00 4.20
212 213 3.802685 CGAATTAGAATCTTCCACGTCCC 59.197 47.826 0.00 0.00 0.00 4.46
213 214 4.430908 ACGAATTAGAATCTTCCACGTCC 58.569 43.478 0.00 0.00 0.00 4.79
214 215 5.575606 TCAACGAATTAGAATCTTCCACGTC 59.424 40.000 0.00 0.00 0.00 4.34
215 216 5.475719 TCAACGAATTAGAATCTTCCACGT 58.524 37.500 0.00 0.00 0.00 4.49
216 217 5.500931 GCTCAACGAATTAGAATCTTCCACG 60.501 44.000 0.00 0.00 0.00 4.94
217 218 5.582665 AGCTCAACGAATTAGAATCTTCCAC 59.417 40.000 0.00 0.00 0.00 4.02
218 219 5.734720 AGCTCAACGAATTAGAATCTTCCA 58.265 37.500 0.00 0.00 0.00 3.53
219 220 6.481984 CAAGCTCAACGAATTAGAATCTTCC 58.518 40.000 0.00 0.00 0.00 3.46
220 221 5.962423 GCAAGCTCAACGAATTAGAATCTTC 59.038 40.000 0.00 0.00 0.00 2.87
221 222 5.412594 TGCAAGCTCAACGAATTAGAATCTT 59.587 36.000 0.00 0.00 0.00 2.40
222 223 4.937620 TGCAAGCTCAACGAATTAGAATCT 59.062 37.500 0.00 0.00 0.00 2.40
223 224 5.024555 GTGCAAGCTCAACGAATTAGAATC 58.975 41.667 0.00 0.00 0.00 2.52
224 225 4.436050 CGTGCAAGCTCAACGAATTAGAAT 60.436 41.667 9.48 0.00 0.00 2.40
225 226 3.120683 CGTGCAAGCTCAACGAATTAGAA 60.121 43.478 9.48 0.00 0.00 2.10
226 227 2.411748 CGTGCAAGCTCAACGAATTAGA 59.588 45.455 9.48 0.00 0.00 2.10
227 228 2.411748 TCGTGCAAGCTCAACGAATTAG 59.588 45.455 13.99 0.00 0.00 1.73
228 229 2.409012 TCGTGCAAGCTCAACGAATTA 58.591 42.857 13.99 0.00 0.00 1.40
229 230 1.225855 TCGTGCAAGCTCAACGAATT 58.774 45.000 13.99 0.00 0.00 2.17
230 231 1.195448 CTTCGTGCAAGCTCAACGAAT 59.805 47.619 23.18 0.00 41.07 3.34
231 232 0.581529 CTTCGTGCAAGCTCAACGAA 59.418 50.000 22.18 22.18 39.92 3.85
232 233 1.221466 CCTTCGTGCAAGCTCAACGA 61.221 55.000 12.76 12.76 0.00 3.85
233 234 1.205064 CCTTCGTGCAAGCTCAACG 59.795 57.895 8.93 8.93 0.00 4.10
234 235 0.235926 GTCCTTCGTGCAAGCTCAAC 59.764 55.000 0.00 0.00 0.00 3.18
235 236 1.221466 CGTCCTTCGTGCAAGCTCAA 61.221 55.000 0.00 0.00 34.52 3.02
236 237 1.664649 CGTCCTTCGTGCAAGCTCA 60.665 57.895 0.00 0.00 34.52 4.26
237 238 2.383527 CCGTCCTTCGTGCAAGCTC 61.384 63.158 0.00 0.00 37.94 4.09
238 239 2.357517 CCGTCCTTCGTGCAAGCT 60.358 61.111 0.00 0.00 37.94 3.74
239 240 3.423154 CCCGTCCTTCGTGCAAGC 61.423 66.667 0.00 0.00 37.94 4.01
240 241 3.423154 GCCCGTCCTTCGTGCAAG 61.423 66.667 0.00 0.00 42.12 4.01
243 244 3.665675 ATCTGCCCGTCCTTCGTGC 62.666 63.158 0.00 0.00 42.80 5.34
244 245 1.079127 AATCTGCCCGTCCTTCGTG 60.079 57.895 0.00 0.00 37.94 4.35
245 246 1.218316 GAATCTGCCCGTCCTTCGT 59.782 57.895 0.00 0.00 37.94 3.85
246 247 0.528684 GAGAATCTGCCCGTCCTTCG 60.529 60.000 0.00 0.00 39.52 3.79
247 248 0.179070 GGAGAATCTGCCCGTCCTTC 60.179 60.000 0.00 0.00 33.73 3.46
248 249 0.909610 TGGAGAATCTGCCCGTCCTT 60.910 55.000 0.00 0.00 33.73 3.36
249 250 1.306141 TGGAGAATCTGCCCGTCCT 60.306 57.895 0.00 0.00 33.73 3.85
250 251 1.153349 GTGGAGAATCTGCCCGTCC 60.153 63.158 0.00 0.00 33.73 4.79
251 252 1.153349 GGTGGAGAATCTGCCCGTC 60.153 63.158 0.00 0.00 33.73 4.79
252 253 2.990479 GGTGGAGAATCTGCCCGT 59.010 61.111 0.00 0.00 33.73 5.28
253 254 2.202932 CGGTGGAGAATCTGCCCG 60.203 66.667 14.55 14.55 32.28 6.13
254 255 0.035439 TTTCGGTGGAGAATCTGCCC 60.035 55.000 0.00 0.00 33.73 5.36
255 256 1.373570 CTTTCGGTGGAGAATCTGCC 58.626 55.000 0.00 0.00 33.73 4.85
256 257 1.373570 CCTTTCGGTGGAGAATCTGC 58.626 55.000 0.00 0.00 33.73 4.26
257 258 1.279271 ACCCTTTCGGTGGAGAATCTG 59.721 52.381 0.00 0.00 46.09 2.90
258 259 1.657804 ACCCTTTCGGTGGAGAATCT 58.342 50.000 0.00 0.00 46.09 2.40
268 269 1.333619 CGGCAATAATCACCCTTTCGG 59.666 52.381 0.00 0.00 37.81 4.30
269 270 2.285083 TCGGCAATAATCACCCTTTCG 58.715 47.619 0.00 0.00 0.00 3.46
270 271 3.066760 CCTTCGGCAATAATCACCCTTTC 59.933 47.826 0.00 0.00 0.00 2.62
271 272 3.023832 CCTTCGGCAATAATCACCCTTT 58.976 45.455 0.00 0.00 0.00 3.11
272 273 2.654863 CCTTCGGCAATAATCACCCTT 58.345 47.619 0.00 0.00 0.00 3.95
273 274 1.133792 CCCTTCGGCAATAATCACCCT 60.134 52.381 0.00 0.00 0.00 4.34
274 275 1.133915 TCCCTTCGGCAATAATCACCC 60.134 52.381 0.00 0.00 0.00 4.61
275 276 2.222027 CTCCCTTCGGCAATAATCACC 58.778 52.381 0.00 0.00 0.00 4.02
276 277 2.614057 CACTCCCTTCGGCAATAATCAC 59.386 50.000 0.00 0.00 0.00 3.06
277 278 2.503765 TCACTCCCTTCGGCAATAATCA 59.496 45.455 0.00 0.00 0.00 2.57
278 279 3.134458 CTCACTCCCTTCGGCAATAATC 58.866 50.000 0.00 0.00 0.00 1.75
279 280 2.158755 CCTCACTCCCTTCGGCAATAAT 60.159 50.000 0.00 0.00 0.00 1.28
280 281 1.209504 CCTCACTCCCTTCGGCAATAA 59.790 52.381 0.00 0.00 0.00 1.40
281 282 0.830648 CCTCACTCCCTTCGGCAATA 59.169 55.000 0.00 0.00 0.00 1.90
282 283 0.909610 TCCTCACTCCCTTCGGCAAT 60.910 55.000 0.00 0.00 0.00 3.56
283 284 1.535444 TCCTCACTCCCTTCGGCAA 60.535 57.895 0.00 0.00 0.00 4.52
284 285 1.984570 CTCCTCACTCCCTTCGGCA 60.985 63.158 0.00 0.00 0.00 5.69
285 286 1.258445 TTCTCCTCACTCCCTTCGGC 61.258 60.000 0.00 0.00 0.00 5.54
286 287 0.533032 GTTCTCCTCACTCCCTTCGG 59.467 60.000 0.00 0.00 0.00 4.30
287 288 1.257743 TGTTCTCCTCACTCCCTTCG 58.742 55.000 0.00 0.00 0.00 3.79
288 289 2.614229 GCTTGTTCTCCTCACTCCCTTC 60.614 54.545 0.00 0.00 0.00 3.46
289 290 1.349357 GCTTGTTCTCCTCACTCCCTT 59.651 52.381 0.00 0.00 0.00 3.95
290 291 0.980423 GCTTGTTCTCCTCACTCCCT 59.020 55.000 0.00 0.00 0.00 4.20
291 292 0.390472 CGCTTGTTCTCCTCACTCCC 60.390 60.000 0.00 0.00 0.00 4.30
292 293 0.603569 TCGCTTGTTCTCCTCACTCC 59.396 55.000 0.00 0.00 0.00 3.85
293 294 2.094494 TCATCGCTTGTTCTCCTCACTC 60.094 50.000 0.00 0.00 0.00 3.51
294 295 1.895798 TCATCGCTTGTTCTCCTCACT 59.104 47.619 0.00 0.00 0.00 3.41
295 296 2.370281 TCATCGCTTGTTCTCCTCAC 57.630 50.000 0.00 0.00 0.00 3.51
296 297 2.562738 TCTTCATCGCTTGTTCTCCTCA 59.437 45.455 0.00 0.00 0.00 3.86
297 298 3.238108 TCTTCATCGCTTGTTCTCCTC 57.762 47.619 0.00 0.00 0.00 3.71
298 299 3.685139 TTCTTCATCGCTTGTTCTCCT 57.315 42.857 0.00 0.00 0.00 3.69
299 300 4.393062 TCATTTCTTCATCGCTTGTTCTCC 59.607 41.667 0.00 0.00 0.00 3.71
300 301 5.447010 CCTCATTTCTTCATCGCTTGTTCTC 60.447 44.000 0.00 0.00 0.00 2.87
301 302 4.394300 CCTCATTTCTTCATCGCTTGTTCT 59.606 41.667 0.00 0.00 0.00 3.01
302 303 4.656041 CCTCATTTCTTCATCGCTTGTTC 58.344 43.478 0.00 0.00 0.00 3.18
303 304 3.119708 GCCTCATTTCTTCATCGCTTGTT 60.120 43.478 0.00 0.00 0.00 2.83
304 305 2.421424 GCCTCATTTCTTCATCGCTTGT 59.579 45.455 0.00 0.00 0.00 3.16
305 306 2.421073 TGCCTCATTTCTTCATCGCTTG 59.579 45.455 0.00 0.00 0.00 4.01
306 307 2.715046 TGCCTCATTTCTTCATCGCTT 58.285 42.857 0.00 0.00 0.00 4.68
307 308 2.408271 TGCCTCATTTCTTCATCGCT 57.592 45.000 0.00 0.00 0.00 4.93
308 309 2.287427 CCATGCCTCATTTCTTCATCGC 60.287 50.000 0.00 0.00 0.00 4.58
309 310 2.947652 ACCATGCCTCATTTCTTCATCG 59.052 45.455 0.00 0.00 0.00 3.84
310 311 4.205587 AGACCATGCCTCATTTCTTCATC 58.794 43.478 0.00 0.00 0.00 2.92
311 312 4.246712 AGACCATGCCTCATTTCTTCAT 57.753 40.909 0.00 0.00 0.00 2.57
312 313 3.726557 AGACCATGCCTCATTTCTTCA 57.273 42.857 0.00 0.00 0.00 3.02
313 314 5.431765 TCTAAGACCATGCCTCATTTCTTC 58.568 41.667 0.00 0.00 30.72 2.87
314 315 5.190528 TCTCTAAGACCATGCCTCATTTCTT 59.809 40.000 0.00 6.00 32.07 2.52
315 316 4.718774 TCTCTAAGACCATGCCTCATTTCT 59.281 41.667 0.00 0.00 0.00 2.52
316 317 5.028549 TCTCTAAGACCATGCCTCATTTC 57.971 43.478 0.00 0.00 0.00 2.17
317 318 4.472833 ACTCTCTAAGACCATGCCTCATTT 59.527 41.667 0.00 0.00 0.00 2.32
318 319 4.036518 ACTCTCTAAGACCATGCCTCATT 58.963 43.478 0.00 0.00 0.00 2.57
319 320 3.387374 CACTCTCTAAGACCATGCCTCAT 59.613 47.826 0.00 0.00 0.00 2.90
320 321 2.762887 CACTCTCTAAGACCATGCCTCA 59.237 50.000 0.00 0.00 0.00 3.86
321 322 2.482839 GCACTCTCTAAGACCATGCCTC 60.483 54.545 0.00 0.00 0.00 4.70
322 323 1.484240 GCACTCTCTAAGACCATGCCT 59.516 52.381 0.00 0.00 0.00 4.75
323 324 1.484240 AGCACTCTCTAAGACCATGCC 59.516 52.381 0.00 0.00 31.94 4.40
324 325 2.977772 AGCACTCTCTAAGACCATGC 57.022 50.000 0.00 0.00 0.00 4.06
325 326 4.642437 TCACTAGCACTCTCTAAGACCATG 59.358 45.833 0.00 0.00 0.00 3.66
326 327 4.861196 TCACTAGCACTCTCTAAGACCAT 58.139 43.478 0.00 0.00 0.00 3.55
327 328 4.302559 TCACTAGCACTCTCTAAGACCA 57.697 45.455 0.00 0.00 0.00 4.02
328 329 4.884744 TCATCACTAGCACTCTCTAAGACC 59.115 45.833 0.00 0.00 0.00 3.85
329 330 6.443934 TTCATCACTAGCACTCTCTAAGAC 57.556 41.667 0.00 0.00 0.00 3.01
330 331 7.340487 TGATTTCATCACTAGCACTCTCTAAGA 59.660 37.037 0.00 0.00 33.59 2.10
331 332 7.487484 TGATTTCATCACTAGCACTCTCTAAG 58.513 38.462 0.00 0.00 33.59 2.18
332 333 7.410120 TGATTTCATCACTAGCACTCTCTAA 57.590 36.000 0.00 0.00 33.59 2.10
333 334 7.594351 ATGATTTCATCACTAGCACTCTCTA 57.406 36.000 0.00 0.00 43.01 2.43
334 335 5.929058 TGATTTCATCACTAGCACTCTCT 57.071 39.130 0.00 0.00 33.59 3.10
348 349 4.386088 CCCTTCCTGTGGAGATGATTTCAT 60.386 45.833 0.00 0.00 39.70 2.57
349 350 3.054139 CCCTTCCTGTGGAGATGATTTCA 60.054 47.826 0.00 0.00 31.21 2.69
350 351 3.054065 ACCCTTCCTGTGGAGATGATTTC 60.054 47.826 0.00 0.00 31.21 2.17
351 352 2.922283 ACCCTTCCTGTGGAGATGATTT 59.078 45.455 0.00 0.00 31.21 2.17
352 353 2.240667 CACCCTTCCTGTGGAGATGATT 59.759 50.000 0.00 0.00 31.21 2.57
353 354 1.842562 CACCCTTCCTGTGGAGATGAT 59.157 52.381 0.00 0.00 31.21 2.45
354 355 1.279496 CACCCTTCCTGTGGAGATGA 58.721 55.000 0.00 0.00 31.21 2.92
355 356 3.869623 CACCCTTCCTGTGGAGATG 57.130 57.895 0.00 0.00 31.21 2.90
370 371 0.949105 CGTTAGATATGGGCGCCACC 60.949 60.000 30.85 12.89 35.80 4.61
371 372 0.249741 ACGTTAGATATGGGCGCCAC 60.250 55.000 30.85 18.39 35.80 5.01
372 373 0.249699 CACGTTAGATATGGGCGCCA 60.250 55.000 30.85 15.30 38.19 5.69
373 374 0.949105 CCACGTTAGATATGGGCGCC 60.949 60.000 21.18 21.18 0.00 6.53
374 375 0.032952 TCCACGTTAGATATGGGCGC 59.967 55.000 0.00 0.00 34.03 6.53
375 376 1.340248 ACTCCACGTTAGATATGGGCG 59.660 52.381 1.76 0.00 34.03 6.13
376 377 2.102588 ACACTCCACGTTAGATATGGGC 59.897 50.000 1.76 0.00 34.03 5.36
377 378 5.524971 TTACACTCCACGTTAGATATGGG 57.475 43.478 1.76 0.00 34.03 4.00
378 379 5.457799 CGTTTACACTCCACGTTAGATATGG 59.542 44.000 1.76 0.00 34.58 2.74
379 380 6.260377 TCGTTTACACTCCACGTTAGATATG 58.740 40.000 1.76 0.00 35.40 1.78
380 381 6.441093 TCGTTTACACTCCACGTTAGATAT 57.559 37.500 1.76 0.00 35.40 1.63
381 382 5.878332 TCGTTTACACTCCACGTTAGATA 57.122 39.130 1.76 0.00 35.40 1.98
382 383 4.771590 TCGTTTACACTCCACGTTAGAT 57.228 40.909 1.76 0.00 35.40 1.98
383 384 4.539870 CTTCGTTTACACTCCACGTTAGA 58.460 43.478 1.76 0.00 35.40 2.10
384 385 3.671928 CCTTCGTTTACACTCCACGTTAG 59.328 47.826 0.00 0.00 35.40 2.34
385 386 3.552684 CCCTTCGTTTACACTCCACGTTA 60.553 47.826 0.00 0.00 35.40 3.18
386 387 2.476821 CCTTCGTTTACACTCCACGTT 58.523 47.619 0.00 0.00 35.40 3.99
387 388 1.269936 CCCTTCGTTTACACTCCACGT 60.270 52.381 0.00 0.00 35.40 4.49
388 389 1.425412 CCCTTCGTTTACACTCCACG 58.575 55.000 0.00 0.00 35.18 4.94
389 390 1.154197 GCCCTTCGTTTACACTCCAC 58.846 55.000 0.00 0.00 0.00 4.02
390 391 0.759959 TGCCCTTCGTTTACACTCCA 59.240 50.000 0.00 0.00 0.00 3.86
391 392 1.154197 GTGCCCTTCGTTTACACTCC 58.846 55.000 0.00 0.00 0.00 3.85
392 393 1.798813 CAGTGCCCTTCGTTTACACTC 59.201 52.381 0.00 0.00 39.48 3.51
393 394 1.878953 CAGTGCCCTTCGTTTACACT 58.121 50.000 0.00 0.00 42.09 3.55
394 395 0.237498 GCAGTGCCCTTCGTTTACAC 59.763 55.000 2.85 0.00 0.00 2.90
395 396 0.179043 TGCAGTGCCCTTCGTTTACA 60.179 50.000 13.72 0.00 0.00 2.41
396 397 0.237498 GTGCAGTGCCCTTCGTTTAC 59.763 55.000 13.72 0.00 0.00 2.01
397 398 0.179043 TGTGCAGTGCCCTTCGTTTA 60.179 50.000 13.72 0.00 0.00 2.01
398 399 1.447317 CTGTGCAGTGCCCTTCGTTT 61.447 55.000 13.72 0.00 0.00 3.60
399 400 1.893808 CTGTGCAGTGCCCTTCGTT 60.894 57.895 13.72 0.00 0.00 3.85
400 401 2.281070 CTGTGCAGTGCCCTTCGT 60.281 61.111 13.72 0.00 0.00 3.85
401 402 3.730761 GCTGTGCAGTGCCCTTCG 61.731 66.667 13.72 0.00 0.00 3.79
402 403 2.195567 TTGCTGTGCAGTGCCCTTC 61.196 57.895 13.72 1.27 40.61 3.46
403 404 2.123769 TTGCTGTGCAGTGCCCTT 60.124 55.556 13.72 0.00 40.61 3.95
404 405 2.908940 GTTGCTGTGCAGTGCCCT 60.909 61.111 13.72 0.00 40.61 5.19
405 406 4.332637 CGTTGCTGTGCAGTGCCC 62.333 66.667 13.72 0.28 40.61 5.36
406 407 3.279116 TCGTTGCTGTGCAGTGCC 61.279 61.111 13.72 4.57 40.61 5.01
407 408 2.051882 GTCGTTGCTGTGCAGTGC 60.052 61.111 8.58 8.58 40.61 4.40
408 409 0.589729 GTTGTCGTTGCTGTGCAGTG 60.590 55.000 0.00 0.00 40.61 3.66
409 410 1.024046 TGTTGTCGTTGCTGTGCAGT 61.024 50.000 0.00 0.00 40.61 4.40
410 411 0.098552 TTGTTGTCGTTGCTGTGCAG 59.901 50.000 0.00 0.00 40.61 4.41
411 412 0.179176 GTTGTTGTCGTTGCTGTGCA 60.179 50.000 0.00 0.00 36.47 4.57
412 413 0.179176 TGTTGTTGTCGTTGCTGTGC 60.179 50.000 0.00 0.00 0.00 4.57
413 414 1.813896 CTGTTGTTGTCGTTGCTGTG 58.186 50.000 0.00 0.00 0.00 3.66
414 415 0.098728 GCTGTTGTTGTCGTTGCTGT 59.901 50.000 0.00 0.00 0.00 4.40
415 416 0.098552 TGCTGTTGTTGTCGTTGCTG 59.901 50.000 0.00 0.00 0.00 4.41
416 417 0.808125 TTGCTGTTGTTGTCGTTGCT 59.192 45.000 0.00 0.00 0.00 3.91
417 418 0.913876 GTTGCTGTTGTTGTCGTTGC 59.086 50.000 0.00 0.00 0.00 4.17
418 419 1.910819 GTGTTGCTGTTGTTGTCGTTG 59.089 47.619 0.00 0.00 0.00 4.10
419 420 1.465020 CGTGTTGCTGTTGTTGTCGTT 60.465 47.619 0.00 0.00 0.00 3.85
420 421 0.096281 CGTGTTGCTGTTGTTGTCGT 59.904 50.000 0.00 0.00 0.00 4.34
421 422 0.371989 TCGTGTTGCTGTTGTTGTCG 59.628 50.000 0.00 0.00 0.00 4.35
422 423 1.856014 GCTCGTGTTGCTGTTGTTGTC 60.856 52.381 0.00 0.00 0.00 3.18
423 424 0.098728 GCTCGTGTTGCTGTTGTTGT 59.901 50.000 0.00 0.00 0.00 3.32
424 425 0.098552 TGCTCGTGTTGCTGTTGTTG 59.901 50.000 0.00 0.00 0.00 3.33
425 426 0.098728 GTGCTCGTGTTGCTGTTGTT 59.901 50.000 0.00 0.00 0.00 2.83
426 427 1.714899 GGTGCTCGTGTTGCTGTTGT 61.715 55.000 0.00 0.00 0.00 3.32
427 428 1.009675 GGTGCTCGTGTTGCTGTTG 60.010 57.895 0.00 0.00 0.00 3.33
428 429 1.451207 TGGTGCTCGTGTTGCTGTT 60.451 52.632 0.00 0.00 0.00 3.16
429 430 2.180204 GTGGTGCTCGTGTTGCTGT 61.180 57.895 0.00 0.00 0.00 4.40
430 431 1.509644 ATGTGGTGCTCGTGTTGCTG 61.510 55.000 0.00 0.00 0.00 4.41
431 432 1.227943 ATGTGGTGCTCGTGTTGCT 60.228 52.632 0.00 0.00 0.00 3.91
432 433 1.081906 CATGTGGTGCTCGTGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
433 434 0.235665 GTCATGTGGTGCTCGTGTTG 59.764 55.000 0.00 0.00 0.00 3.33
438 439 0.948623 TTTCCGTCATGTGGTGCTCG 60.949 55.000 6.63 0.00 0.00 5.03
455 456 2.266279 TCCTCCGGAATCTTCACCTTT 58.734 47.619 5.23 0.00 0.00 3.11
523 524 1.994507 ATGCTCGACTCTTCGTCCCG 61.995 60.000 0.00 0.00 46.01 5.14
540 541 2.516930 GTGGTCCCGGCATCCATG 60.517 66.667 12.31 0.00 33.68 3.66
541 542 1.059584 TATGTGGTCCCGGCATCCAT 61.060 55.000 12.31 5.67 33.68 3.41
550 551 1.082117 CGTGCTCGTTATGTGGTCCC 61.082 60.000 0.00 0.00 0.00 4.46
563 564 3.036429 ATGCTCCCCCTTCGTGCTC 62.036 63.158 0.00 0.00 0.00 4.26
599 608 6.890663 AACACAACAAGATCACAACAAATG 57.109 33.333 0.00 0.00 0.00 2.32
621 630 3.886505 ACGGGTCTCAAATAACAAGCAAA 59.113 39.130 0.00 0.00 0.00 3.68
639 650 1.081892 CTGTCTTTGATGCTGACGGG 58.918 55.000 0.00 0.00 34.48 5.28
646 657 3.340814 TTCTCTCCCTGTCTTTGATGC 57.659 47.619 0.00 0.00 0.00 3.91
668 679 0.318441 TGTTGTCTTCCTCGCCTCTG 59.682 55.000 0.00 0.00 0.00 3.35
683 694 1.206115 GGTTTTGACGGCGCTTGTTG 61.206 55.000 6.90 0.00 0.00 3.33
741 752 2.428085 GGAGAACGGGAGGGAGAGC 61.428 68.421 0.00 0.00 0.00 4.09
781 792 3.836562 GTTTGACTGGTCCTAGGGAGTTA 59.163 47.826 9.46 3.10 29.39 2.24
869 884 0.840288 TCAGGGCATGTGGTGGTAGT 60.840 55.000 0.00 0.00 0.00 2.73
871 886 1.682849 GTCAGGGCATGTGGTGGTA 59.317 57.895 0.00 0.00 0.00 3.25
912 928 2.189191 GAGTGACATGCTGGCAGGGA 62.189 60.000 17.64 0.00 35.04 4.20
1029 1054 1.300931 CCTCAGGGTCGTGTGTGTG 60.301 63.158 0.00 0.00 0.00 3.82
1038 1063 0.825840 ATCGCTCTAGCCTCAGGGTC 60.826 60.000 0.00 0.00 37.91 4.46
1121 1150 3.094058 GTGATCGATCGAGCGCGG 61.094 66.667 28.29 0.00 38.28 6.46
1138 1169 1.205417 GCCATTCTTGTTGTCCATGGG 59.795 52.381 13.02 0.00 35.79 4.00
1139 1170 1.135315 CGCCATTCTTGTTGTCCATGG 60.135 52.381 4.97 4.97 37.96 3.66
1429 1575 2.513204 CAGCTCATCCAGGCACGG 60.513 66.667 0.00 0.00 0.00 4.94
1554 1703 5.818678 AACACCCAGACTCTGTGTATTTA 57.181 39.130 5.32 0.00 42.08 1.40
1555 1704 4.706842 AACACCCAGACTCTGTGTATTT 57.293 40.909 5.32 0.00 42.08 1.40
1557 1706 5.307196 ACTTTAACACCCAGACTCTGTGTAT 59.693 40.000 5.32 0.00 42.08 2.29
1558 1707 4.652421 ACTTTAACACCCAGACTCTGTGTA 59.348 41.667 5.32 0.00 42.08 2.90
1570 1874 3.798889 GCAAAGGCTGAACTTTAACACCC 60.799 47.826 0.00 0.00 38.56 4.61
1580 1884 1.133790 CTATGGCTGCAAAGGCTGAAC 59.866 52.381 0.50 0.00 41.06 3.18
1592 1896 1.676746 AATGCTGCTGTCTATGGCTG 58.323 50.000 0.00 0.00 0.00 4.85
1625 1929 3.243367 ACATACACAAATGTTTGCGCTGT 60.243 39.130 9.73 3.38 40.35 4.40
1663 1967 9.209175 GAATACATATATCTTGTGAACTCCCAC 57.791 37.037 2.31 0.00 37.55 4.61
1684 1988 1.816679 GGCCCCGGACGTTGAATAC 60.817 63.158 0.73 0.00 0.00 1.89
1708 2016 3.857665 TGCAAGATCGAATTCACGAGTAC 59.142 43.478 6.22 0.00 45.22 2.73
1716 2024 2.369600 CACGCATGCAAGATCGAATTC 58.630 47.619 19.57 0.00 0.00 2.17
1756 2064 3.440872 GTCGAATATATCTCGTGCCTCCT 59.559 47.826 13.36 0.00 37.56 3.69
1757 2065 3.190744 TGTCGAATATATCTCGTGCCTCC 59.809 47.826 13.36 0.00 37.56 4.30
1758 2066 4.421033 TGTCGAATATATCTCGTGCCTC 57.579 45.455 13.36 0.00 37.56 4.70
1759 2067 5.392767 AATGTCGAATATATCTCGTGCCT 57.607 39.130 13.36 3.83 37.56 4.75
1760 2068 5.668866 GCAAATGTCGAATATATCTCGTGCC 60.669 44.000 13.36 7.02 37.56 5.01
1761 2069 5.308927 GCAAATGTCGAATATATCTCGTGC 58.691 41.667 13.36 11.95 37.56 5.34
1763 2071 5.635280 CAGGCAAATGTCGAATATATCTCGT 59.365 40.000 13.36 0.00 37.56 4.18
1765 2073 5.352569 CCCAGGCAAATGTCGAATATATCTC 59.647 44.000 0.00 0.00 0.00 2.75
1766 2074 5.013079 TCCCAGGCAAATGTCGAATATATCT 59.987 40.000 0.00 0.00 0.00 1.98
1767 2075 5.245531 TCCCAGGCAAATGTCGAATATATC 58.754 41.667 0.00 0.00 0.00 1.63
1776 2232 1.244019 AACGCTCCCAGGCAAATGTC 61.244 55.000 0.00 0.00 0.00 3.06
1793 2249 6.183360 ACCTGGCTGTCTTAGAAAAAGAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
1806 2262 2.356535 GGATCAATCACCTGGCTGTCTT 60.357 50.000 0.00 0.00 0.00 3.01
1813 2270 4.096382 CGGTTAAAAGGATCAATCACCTGG 59.904 45.833 0.00 0.00 36.56 4.45
1815 2272 5.174037 TCGGTTAAAAGGATCAATCACCT 57.826 39.130 0.00 0.00 38.23 4.00
1846 2303 2.693267 ACCGGTCCAAATTAGAGAGC 57.307 50.000 0.00 0.00 0.00 4.09
1851 2308 5.123344 CCTTTCTGTTACCGGTCCAAATTAG 59.877 44.000 12.40 3.47 0.00 1.73
1866 2323 4.339872 TTTCATGCATTGCCTTTCTGTT 57.660 36.364 6.12 0.00 0.00 3.16
1906 2363 6.322456 AGCAGTGCAATAAGAGAGTATGAGTA 59.678 38.462 19.20 0.00 0.00 2.59
1912 2369 8.260818 AGAAATTAGCAGTGCAATAAGAGAGTA 58.739 33.333 19.20 0.00 0.00 2.59
1928 2385 3.939740 AGAGATGGGCAGAAATTAGCA 57.060 42.857 0.00 0.00 0.00 3.49
1950 2407 3.815962 TGGTTTGCGATGCTGTAGTTTTA 59.184 39.130 0.00 0.00 0.00 1.52
1954 2411 1.890876 TTGGTTTGCGATGCTGTAGT 58.109 45.000 0.00 0.00 0.00 2.73
1979 2436 5.612709 GTGTAACAGAACTTGCTTAAGAGCG 60.613 44.000 6.67 0.00 44.75 5.03
2043 2500 2.906354 AGACATCTTTCACGGTATGCC 58.094 47.619 0.00 0.00 0.00 4.40
2046 2503 7.093902 TGTTCTCTAAGACATCTTTCACGGTAT 60.094 37.037 0.00 0.00 37.40 2.73
2050 2507 6.090088 CCTTGTTCTCTAAGACATCTTTCACG 59.910 42.308 0.00 0.00 37.40 4.35
2058 2515 7.609532 CCTGAATTTCCTTGTTCTCTAAGACAT 59.390 37.037 0.00 0.00 0.00 3.06
2065 2522 3.245407 CCCCCTGAATTTCCTTGTTCTCT 60.245 47.826 0.00 0.00 0.00 3.10
2066 2523 3.092301 CCCCCTGAATTTCCTTGTTCTC 58.908 50.000 0.00 0.00 0.00 2.87
2067 2524 3.175438 CCCCCTGAATTTCCTTGTTCT 57.825 47.619 0.00 0.00 0.00 3.01
2085 2542 3.383185 TGTTTCTTGTGTGTGATTTCCCC 59.617 43.478 0.00 0.00 0.00 4.81
2086 2543 4.647424 TGTTTCTTGTGTGTGATTTCCC 57.353 40.909 0.00 0.00 0.00 3.97
2095 2554 7.850982 GCGTAGGAAATATATGTTTCTTGTGTG 59.149 37.037 20.26 9.89 38.02 3.82
2117 2576 6.422701 GTCCAGCACTACAAATATTATGCGTA 59.577 38.462 0.00 0.00 38.12 4.42
2118 2577 5.236478 GTCCAGCACTACAAATATTATGCGT 59.764 40.000 0.00 0.00 38.12 5.24
2119 2578 5.236263 TGTCCAGCACTACAAATATTATGCG 59.764 40.000 0.00 0.00 38.12 4.73
2315 2825 5.188988 TGTACTGGGTAGAGTATGTGTCT 57.811 43.478 0.00 0.00 31.14 3.41
2343 2853 4.951094 AGAACTCTAGACACTGGTGTATCC 59.049 45.833 6.35 0.00 45.05 2.59
2344 2854 5.648526 TGAGAACTCTAGACACTGGTGTATC 59.351 44.000 6.35 0.00 45.05 2.24
2345 2855 5.571285 TGAGAACTCTAGACACTGGTGTAT 58.429 41.667 6.35 6.31 45.05 2.29
2346 2856 4.981812 TGAGAACTCTAGACACTGGTGTA 58.018 43.478 6.35 0.00 45.05 2.90
2347 2857 5.452077 GTTTGAGAACTCTAGACACTGGTGT 60.452 44.000 6.04 6.04 38.43 4.16
2348 2858 4.855715 TTGAGAACTCTAGACACTGGTG 57.144 45.455 3.51 0.00 0.00 4.17
2349 2859 4.896482 AGTTTGAGAACTCTAGACACTGGT 59.104 41.667 3.51 0.00 42.35 4.00
2350 2860 5.461032 AGTTTGAGAACTCTAGACACTGG 57.539 43.478 3.51 0.00 42.35 4.00
2427 2938 5.618640 CGAGATCCTTCTTTTCTGCAAAAGG 60.619 44.000 10.27 6.28 46.03 3.11
2428 2939 5.180117 TCGAGATCCTTCTTTTCTGCAAAAG 59.820 40.000 4.75 4.75 46.99 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.