Multiple sequence alignment - TraesCS6D01G256400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G256400 | chr6D | 100.000 | 3437 | 0 | 0 | 1 | 3437 | 362858342 | 362861778 | 0.000000e+00 | 6348.0 |
1 | TraesCS6D01G256400 | chr6D | 93.590 | 1482 | 73 | 7 | 581 | 2057 | 362633807 | 362635271 | 0.000000e+00 | 2191.0 |
2 | TraesCS6D01G256400 | chr6D | 83.041 | 1539 | 159 | 52 | 780 | 2267 | 362953471 | 362954958 | 0.000000e+00 | 1303.0 |
3 | TraesCS6D01G256400 | chr6D | 88.011 | 1101 | 75 | 12 | 1157 | 2242 | 362887991 | 362889049 | 0.000000e+00 | 1249.0 |
4 | TraesCS6D01G256400 | chr6D | 90.113 | 708 | 47 | 6 | 2054 | 2747 | 362635374 | 362636072 | 0.000000e+00 | 898.0 |
5 | TraesCS6D01G256400 | chr6D | 88.262 | 656 | 47 | 19 | 2507 | 3141 | 362236599 | 362237245 | 0.000000e+00 | 758.0 |
6 | TraesCS6D01G256400 | chr6D | 86.098 | 410 | 39 | 9 | 2749 | 3148 | 362902267 | 362902668 | 3.170000e-115 | 425.0 |
7 | TraesCS6D01G256400 | chr6D | 86.389 | 360 | 33 | 12 | 2789 | 3141 | 362636302 | 362636652 | 2.500000e-101 | 379.0 |
8 | TraesCS6D01G256400 | chr6D | 89.545 | 220 | 16 | 1 | 2292 | 2511 | 362232349 | 362232561 | 4.370000e-69 | 272.0 |
9 | TraesCS6D01G256400 | chr6D | 77.800 | 491 | 45 | 28 | 588 | 1035 | 362887469 | 362887938 | 9.530000e-61 | 244.0 |
10 | TraesCS6D01G256400 | chr6D | 93.600 | 125 | 7 | 1 | 1 | 124 | 362633362 | 362633486 | 5.860000e-43 | 185.0 |
11 | TraesCS6D01G256400 | chr6D | 94.624 | 93 | 5 | 0 | 431 | 523 | 362633726 | 362633818 | 9.940000e-31 | 145.0 |
12 | TraesCS6D01G256400 | chr6D | 93.220 | 59 | 4 | 0 | 526 | 584 | 414076836 | 414076894 | 1.700000e-13 | 87.9 |
13 | TraesCS6D01G256400 | chr6D | 91.667 | 48 | 3 | 1 | 2343 | 2390 | 362954965 | 362955011 | 7.960000e-07 | 65.8 |
14 | TraesCS6D01G256400 | chr6B | 93.011 | 2876 | 147 | 22 | 581 | 3437 | 543824987 | 543827827 | 0.000000e+00 | 4148.0 |
15 | TraesCS6D01G256400 | chr6B | 83.072 | 1146 | 110 | 40 | 1150 | 2267 | 544092082 | 544093171 | 0.000000e+00 | 965.0 |
16 | TraesCS6D01G256400 | chr6B | 85.192 | 520 | 53 | 13 | 1523 | 2025 | 543940450 | 543940962 | 2.370000e-141 | 512.0 |
17 | TraesCS6D01G256400 | chr6B | 88.372 | 430 | 33 | 6 | 594 | 1008 | 543909627 | 543910054 | 5.120000e-138 | 501.0 |
18 | TraesCS6D01G256400 | chr6B | 82.478 | 565 | 71 | 15 | 2248 | 2800 | 543960617 | 543961165 | 1.440000e-128 | 470.0 |
19 | TraesCS6D01G256400 | chr6B | 79.002 | 481 | 58 | 28 | 581 | 1047 | 544091563 | 544092014 | 4.340000e-74 | 289.0 |
20 | TraesCS6D01G256400 | chr6B | 84.583 | 240 | 17 | 4 | 2025 | 2252 | 543959893 | 543960124 | 1.610000e-53 | 220.0 |
21 | TraesCS6D01G256400 | chr6B | 87.218 | 133 | 6 | 5 | 180 | 312 | 624474324 | 624474445 | 1.290000e-29 | 141.0 |
22 | TraesCS6D01G256400 | chr6B | 84.672 | 137 | 17 | 3 | 180 | 314 | 413910089 | 413910223 | 2.150000e-27 | 134.0 |
23 | TraesCS6D01G256400 | chr6A | 90.204 | 2062 | 112 | 25 | 704 | 2742 | 502928586 | 502930580 | 0.000000e+00 | 2606.0 |
24 | TraesCS6D01G256400 | chr6A | 86.910 | 1039 | 77 | 14 | 1148 | 2159 | 503229976 | 503230982 | 0.000000e+00 | 1110.0 |
25 | TraesCS6D01G256400 | chr6A | 86.957 | 943 | 73 | 30 | 1171 | 2108 | 503248753 | 503249650 | 0.000000e+00 | 1014.0 |
26 | TraesCS6D01G256400 | chr6A | 81.466 | 491 | 46 | 19 | 581 | 1047 | 503248207 | 503248676 | 9.070000e-96 | 361.0 |
27 | TraesCS6D01G256400 | chr6A | 86.047 | 301 | 28 | 6 | 2765 | 3061 | 502930979 | 502931269 | 9.260000e-81 | 311.0 |
28 | TraesCS6D01G256400 | chr6A | 79.375 | 480 | 56 | 21 | 590 | 1047 | 503229451 | 503229909 | 7.210000e-77 | 298.0 |
29 | TraesCS6D01G256400 | chr6A | 89.109 | 101 | 9 | 2 | 2155 | 2253 | 503231006 | 503231106 | 1.300000e-24 | 124.0 |
30 | TraesCS6D01G256400 | chr6A | 92.683 | 82 | 6 | 0 | 1075 | 1156 | 516341674 | 516341755 | 6.030000e-23 | 119.0 |
31 | TraesCS6D01G256400 | chr6A | 89.394 | 66 | 6 | 1 | 3 | 67 | 94310957 | 94310892 | 7.910000e-12 | 82.4 |
32 | TraesCS6D01G256400 | chr6A | 94.231 | 52 | 3 | 0 | 444 | 495 | 502927795 | 502927846 | 2.840000e-11 | 80.5 |
33 | TraesCS6D01G256400 | chr2B | 88.353 | 601 | 56 | 5 | 1075 | 1675 | 774846094 | 774846680 | 0.000000e+00 | 710.0 |
34 | TraesCS6D01G256400 | chr7D | 92.248 | 129 | 10 | 0 | 180 | 308 | 563897828 | 563897700 | 2.110000e-42 | 183.0 |
35 | TraesCS6D01G256400 | chr7D | 89.394 | 66 | 6 | 1 | 3 | 67 | 358198679 | 358198744 | 7.910000e-12 | 82.4 |
36 | TraesCS6D01G256400 | chr7D | 87.879 | 66 | 7 | 1 | 3 | 67 | 294658607 | 294658672 | 3.680000e-10 | 76.8 |
37 | TraesCS6D01G256400 | chr7D | 87.879 | 66 | 6 | 2 | 3 | 67 | 623762539 | 623762475 | 3.680000e-10 | 76.8 |
38 | TraesCS6D01G256400 | chr7A | 89.130 | 138 | 11 | 2 | 180 | 314 | 725157442 | 725157306 | 5.900000e-38 | 169.0 |
39 | TraesCS6D01G256400 | chr7A | 85.714 | 133 | 19 | 0 | 180 | 312 | 432145407 | 432145275 | 1.290000e-29 | 141.0 |
40 | TraesCS6D01G256400 | chr3D | 85.401 | 137 | 15 | 4 | 180 | 314 | 597918868 | 597918735 | 1.660000e-28 | 137.0 |
41 | TraesCS6D01G256400 | chr3D | 83.942 | 137 | 18 | 3 | 180 | 314 | 396563717 | 396563851 | 1.000000e-25 | 128.0 |
42 | TraesCS6D01G256400 | chr3D | 91.525 | 59 | 5 | 0 | 526 | 584 | 596653258 | 596653200 | 7.910000e-12 | 82.4 |
43 | TraesCS6D01G256400 | chr3D | 87.879 | 66 | 7 | 1 | 3 | 67 | 562580498 | 562580433 | 3.680000e-10 | 76.8 |
44 | TraesCS6D01G256400 | chr7B | 84.444 | 135 | 21 | 0 | 180 | 314 | 5089075 | 5089209 | 2.150000e-27 | 134.0 |
45 | TraesCS6D01G256400 | chr7B | 86.957 | 69 | 8 | 1 | 3 | 70 | 85275768 | 85275700 | 3.680000e-10 | 76.8 |
46 | TraesCS6D01G256400 | chr4B | 84.328 | 134 | 17 | 3 | 180 | 311 | 212492241 | 212492372 | 1.000000e-25 | 128.0 |
47 | TraesCS6D01G256400 | chr3A | 96.491 | 57 | 2 | 0 | 526 | 582 | 706116607 | 706116663 | 1.020000e-15 | 95.3 |
48 | TraesCS6D01G256400 | chr5B | 94.915 | 59 | 3 | 0 | 526 | 584 | 8014045 | 8013987 | 3.650000e-15 | 93.5 |
49 | TraesCS6D01G256400 | chr5A | 94.915 | 59 | 3 | 0 | 526 | 584 | 38018102 | 38018044 | 3.650000e-15 | 93.5 |
50 | TraesCS6D01G256400 | chr5A | 89.831 | 59 | 6 | 0 | 526 | 584 | 631255798 | 631255856 | 3.680000e-10 | 76.8 |
51 | TraesCS6D01G256400 | chr5D | 90.909 | 66 | 5 | 1 | 3 | 67 | 412829231 | 412829166 | 1.700000e-13 | 87.9 |
52 | TraesCS6D01G256400 | chr1A | 93.220 | 59 | 4 | 0 | 526 | 584 | 516740632 | 516740690 | 1.700000e-13 | 87.9 |
53 | TraesCS6D01G256400 | chr3B | 91.525 | 59 | 5 | 0 | 526 | 584 | 75362837 | 75362895 | 7.910000e-12 | 82.4 |
54 | TraesCS6D01G256400 | chr2D | 87.879 | 66 | 7 | 1 | 3 | 67 | 67196000 | 67195935 | 3.680000e-10 | 76.8 |
55 | TraesCS6D01G256400 | chr4D | 84.932 | 73 | 4 | 7 | 512 | 582 | 97956126 | 97956059 | 2.210000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G256400 | chr6D | 362858342 | 362861778 | 3436 | False | 6348.000000 | 6348 | 100.000000 | 1 | 3437 | 1 | chr6D.!!$F3 | 3436 |
1 | TraesCS6D01G256400 | chr6D | 362633362 | 362636652 | 3290 | False | 759.600000 | 2191 | 91.663200 | 1 | 3141 | 5 | chr6D.!!$F6 | 3140 |
2 | TraesCS6D01G256400 | chr6D | 362236599 | 362237245 | 646 | False | 758.000000 | 758 | 88.262000 | 2507 | 3141 | 1 | chr6D.!!$F2 | 634 |
3 | TraesCS6D01G256400 | chr6D | 362887469 | 362889049 | 1580 | False | 746.500000 | 1249 | 82.905500 | 588 | 2242 | 2 | chr6D.!!$F7 | 1654 |
4 | TraesCS6D01G256400 | chr6D | 362953471 | 362955011 | 1540 | False | 684.400000 | 1303 | 87.354000 | 780 | 2390 | 2 | chr6D.!!$F8 | 1610 |
5 | TraesCS6D01G256400 | chr6B | 543824987 | 543827827 | 2840 | False | 4148.000000 | 4148 | 93.011000 | 581 | 3437 | 1 | chr6B.!!$F2 | 2856 |
6 | TraesCS6D01G256400 | chr6B | 544091563 | 544093171 | 1608 | False | 627.000000 | 965 | 81.037000 | 581 | 2267 | 2 | chr6B.!!$F7 | 1686 |
7 | TraesCS6D01G256400 | chr6B | 543940450 | 543940962 | 512 | False | 512.000000 | 512 | 85.192000 | 1523 | 2025 | 1 | chr6B.!!$F4 | 502 |
8 | TraesCS6D01G256400 | chr6B | 543959893 | 543961165 | 1272 | False | 345.000000 | 470 | 83.530500 | 2025 | 2800 | 2 | chr6B.!!$F6 | 775 |
9 | TraesCS6D01G256400 | chr6A | 502927795 | 502931269 | 3474 | False | 999.166667 | 2606 | 90.160667 | 444 | 3061 | 3 | chr6A.!!$F2 | 2617 |
10 | TraesCS6D01G256400 | chr6A | 503248207 | 503249650 | 1443 | False | 687.500000 | 1014 | 84.211500 | 581 | 2108 | 2 | chr6A.!!$F4 | 1527 |
11 | TraesCS6D01G256400 | chr6A | 503229451 | 503231106 | 1655 | False | 510.666667 | 1110 | 85.131333 | 590 | 2253 | 3 | chr6A.!!$F3 | 1663 |
12 | TraesCS6D01G256400 | chr2B | 774846094 | 774846680 | 586 | False | 710.000000 | 710 | 88.353000 | 1075 | 1675 | 1 | chr2B.!!$F1 | 600 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
533 | 1000 | 0.316204 | GCATGGCCATGGAGTAATGC | 59.684 | 55.0 | 39.72 | 25.06 | 39.16 | 3.56 | F |
1200 | 2029 | 0.529773 | GATCATGGCGTTAGTGCGGA | 60.530 | 55.0 | 0.00 | 0.00 | 35.06 | 5.54 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1559 | 2397 | 0.319728 | TCTGAGTCAGGCTGAAGCAC | 59.680 | 55.0 | 20.62 | 7.41 | 44.36 | 4.40 | R |
2674 | 4223 | 0.577269 | CCTGCACGAGTAATTAGCGC | 59.423 | 55.0 | 0.00 | 0.00 | 0.00 | 5.92 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 30 | 5.221130 | AGCTTTACGTAGTTGACTTCAGAC | 58.779 | 41.667 | 0.00 | 0.00 | 37.78 | 3.51 |
58 | 60 | 2.178912 | TGCAGAGTAAAAAGGACCCG | 57.821 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
60 | 62 | 2.304761 | TGCAGAGTAAAAAGGACCCGAT | 59.695 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
71 | 73 | 1.831736 | AGGACCCGATGGAGTAAGTTG | 59.168 | 52.381 | 0.00 | 0.00 | 34.81 | 3.16 |
124 | 126 | 6.318648 | GGTGAGCATCCATTTATGACAAGTTA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
125 | 127 | 7.013655 | GGTGAGCATCCATTTATGACAAGTTAT | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
126 | 128 | 9.056005 | GTGAGCATCCATTTATGACAAGTTATA | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
127 | 129 | 9.056005 | TGAGCATCCATTTATGACAAGTTATAC | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
128 | 130 | 8.087982 | AGCATCCATTTATGACAAGTTATACG | 57.912 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
129 | 131 | 7.173218 | AGCATCCATTTATGACAAGTTATACGG | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
130 | 132 | 7.172532 | GCATCCATTTATGACAAGTTATACGGA | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 4.69 |
131 | 133 | 9.219603 | CATCCATTTATGACAAGTTATACGGAT | 57.780 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
133 | 135 | 9.701098 | TCCATTTATGACAAGTTATACGGATAC | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
134 | 136 | 8.932791 | CCATTTATGACAAGTTATACGGATACC | 58.067 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
135 | 137 | 9.483916 | CATTTATGACAAGTTATACGGATACCA | 57.516 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
136 | 138 | 9.706691 | ATTTATGACAAGTTATACGGATACCAG | 57.293 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
137 | 139 | 6.726490 | ATGACAAGTTATACGGATACCAGT | 57.274 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
138 | 140 | 5.898174 | TGACAAGTTATACGGATACCAGTG | 58.102 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
139 | 141 | 5.419788 | TGACAAGTTATACGGATACCAGTGT | 59.580 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
140 | 142 | 6.602803 | TGACAAGTTATACGGATACCAGTGTA | 59.397 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
141 | 143 | 7.122501 | TGACAAGTTATACGGATACCAGTGTAA | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
142 | 144 | 7.486647 | ACAAGTTATACGGATACCAGTGTAAG | 58.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
143 | 145 | 7.340232 | ACAAGTTATACGGATACCAGTGTAAGA | 59.660 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
144 | 146 | 7.886629 | AGTTATACGGATACCAGTGTAAGAA | 57.113 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
145 | 147 | 7.710896 | AGTTATACGGATACCAGTGTAAGAAC | 58.289 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
146 | 148 | 3.881937 | ACGGATACCAGTGTAAGAACC | 57.118 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
147 | 149 | 2.498885 | ACGGATACCAGTGTAAGAACCC | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
148 | 150 | 2.498481 | CGGATACCAGTGTAAGAACCCA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
149 | 151 | 3.134081 | CGGATACCAGTGTAAGAACCCAT | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
150 | 152 | 4.704965 | GGATACCAGTGTAAGAACCCATC | 58.295 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
151 | 153 | 4.163458 | GGATACCAGTGTAAGAACCCATCA | 59.837 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
152 | 154 | 5.338871 | GGATACCAGTGTAAGAACCCATCAA | 60.339 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
153 | 155 | 4.657814 | ACCAGTGTAAGAACCCATCAAT | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
154 | 156 | 5.772393 | ACCAGTGTAAGAACCCATCAATA | 57.228 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
155 | 157 | 6.134535 | ACCAGTGTAAGAACCCATCAATAA | 57.865 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
156 | 158 | 6.548321 | ACCAGTGTAAGAACCCATCAATAAA | 58.452 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
157 | 159 | 7.007723 | ACCAGTGTAAGAACCCATCAATAAAA | 58.992 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
158 | 160 | 7.176690 | ACCAGTGTAAGAACCCATCAATAAAAG | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
159 | 161 | 7.029563 | CAGTGTAAGAACCCATCAATAAAAGC | 58.970 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
160 | 162 | 6.152831 | AGTGTAAGAACCCATCAATAAAAGCC | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
161 | 163 | 6.013379 | TGTAAGAACCCATCAATAAAAGCCA | 58.987 | 36.000 | 0.00 | 0.00 | 0.00 | 4.75 |
162 | 164 | 6.667414 | TGTAAGAACCCATCAATAAAAGCCAT | 59.333 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
163 | 165 | 5.859205 | AGAACCCATCAATAAAAGCCATC | 57.141 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
164 | 166 | 5.522641 | AGAACCCATCAATAAAAGCCATCT | 58.477 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
165 | 167 | 5.960202 | AGAACCCATCAATAAAAGCCATCTT | 59.040 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
166 | 168 | 6.441604 | AGAACCCATCAATAAAAGCCATCTTT | 59.558 | 34.615 | 0.00 | 0.00 | 43.94 | 2.52 |
197 | 199 | 7.789202 | AGATGGATGTTATGCTACTATGAGT | 57.211 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
198 | 200 | 7.835822 | AGATGGATGTTATGCTACTATGAGTC | 58.164 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
199 | 201 | 6.976934 | TGGATGTTATGCTACTATGAGTCA | 57.023 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
200 | 202 | 7.544804 | TGGATGTTATGCTACTATGAGTCAT | 57.455 | 36.000 | 11.12 | 11.12 | 0.00 | 3.06 |
201 | 203 | 7.381323 | TGGATGTTATGCTACTATGAGTCATG | 58.619 | 38.462 | 16.15 | 8.24 | 0.00 | 3.07 |
202 | 204 | 6.312426 | GGATGTTATGCTACTATGAGTCATGC | 59.688 | 42.308 | 16.15 | 10.71 | 0.00 | 4.06 |
203 | 205 | 6.160576 | TGTTATGCTACTATGAGTCATGCA | 57.839 | 37.500 | 16.15 | 15.92 | 35.05 | 3.96 |
204 | 206 | 6.762333 | TGTTATGCTACTATGAGTCATGCAT | 58.238 | 36.000 | 24.03 | 24.03 | 40.31 | 3.96 |
205 | 207 | 6.647895 | TGTTATGCTACTATGAGTCATGCATG | 59.352 | 38.462 | 26.85 | 21.07 | 38.86 | 4.06 |
206 | 208 | 4.942761 | TGCTACTATGAGTCATGCATGA | 57.057 | 40.909 | 25.42 | 25.42 | 29.09 | 3.07 |
221 | 223 | 8.021955 | GTCATGCATGACGATAAATAAGATGA | 57.978 | 34.615 | 36.65 | 7.31 | 46.46 | 2.92 |
222 | 224 | 8.663025 | GTCATGCATGACGATAAATAAGATGAT | 58.337 | 33.333 | 36.65 | 0.00 | 46.46 | 2.45 |
223 | 225 | 9.223099 | TCATGCATGACGATAAATAAGATGATT | 57.777 | 29.630 | 25.42 | 0.00 | 0.00 | 2.57 |
224 | 226 | 9.836076 | CATGCATGACGATAAATAAGATGATTT | 57.164 | 29.630 | 22.59 | 0.00 | 33.60 | 2.17 |
293 | 295 | 9.928618 | ATAGACTAGTACCATATGCATGATACT | 57.071 | 33.333 | 10.16 | 13.05 | 42.99 | 2.12 |
295 | 297 | 9.755122 | AGACTAGTACCATATGCATGATACTAA | 57.245 | 33.333 | 10.16 | 0.00 | 41.34 | 2.24 |
310 | 312 | 9.765795 | GCATGATACTAATGTATAATACTCCCC | 57.234 | 37.037 | 0.00 | 0.00 | 39.29 | 4.81 |
320 | 322 | 8.808240 | ATGTATAATACTCCCCACTTTAAGGA | 57.192 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
321 | 323 | 8.626917 | TGTATAATACTCCCCACTTTAAGGAA | 57.373 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
322 | 324 | 8.488668 | TGTATAATACTCCCCACTTTAAGGAAC | 58.511 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
323 | 325 | 5.853572 | AATACTCCCCACTTTAAGGAACA | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
324 | 326 | 6.402981 | AATACTCCCCACTTTAAGGAACAT | 57.597 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
325 | 327 | 7.519347 | AATACTCCCCACTTTAAGGAACATA | 57.481 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
326 | 328 | 5.175388 | ACTCCCCACTTTAAGGAACATAC | 57.825 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
327 | 329 | 4.850386 | ACTCCCCACTTTAAGGAACATACT | 59.150 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
328 | 330 | 6.027482 | ACTCCCCACTTTAAGGAACATACTA | 58.973 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
329 | 331 | 6.502863 | ACTCCCCACTTTAAGGAACATACTAA | 59.497 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
330 | 332 | 7.184022 | ACTCCCCACTTTAAGGAACATACTAAT | 59.816 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
331 | 333 | 7.343357 | TCCCCACTTTAAGGAACATACTAATG | 58.657 | 38.462 | 0.00 | 0.00 | 39.17 | 1.90 |
360 | 362 | 6.936968 | ACTCCCTAATAACTTCTTGACACT | 57.063 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
365 | 367 | 6.037610 | CCCTAATAACTTCTTGACACTGATGC | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.91 |
385 | 387 | 3.453717 | TGCACTGCTTCTTGATATCTCCT | 59.546 | 43.478 | 3.98 | 0.00 | 0.00 | 3.69 |
386 | 388 | 3.808726 | GCACTGCTTCTTGATATCTCCTG | 59.191 | 47.826 | 3.98 | 0.00 | 0.00 | 3.86 |
387 | 389 | 3.808726 | CACTGCTTCTTGATATCTCCTGC | 59.191 | 47.826 | 3.98 | 3.29 | 0.00 | 4.85 |
388 | 390 | 3.453717 | ACTGCTTCTTGATATCTCCTGCA | 59.546 | 43.478 | 3.98 | 7.38 | 0.00 | 4.41 |
390 | 392 | 5.045012 | TGCTTCTTGATATCTCCTGCATT | 57.955 | 39.130 | 3.98 | 0.00 | 0.00 | 3.56 |
391 | 393 | 5.443283 | TGCTTCTTGATATCTCCTGCATTT | 58.557 | 37.500 | 3.98 | 0.00 | 0.00 | 2.32 |
392 | 394 | 5.889853 | TGCTTCTTGATATCTCCTGCATTTT | 59.110 | 36.000 | 3.98 | 0.00 | 0.00 | 1.82 |
393 | 395 | 7.056006 | TGCTTCTTGATATCTCCTGCATTTTA | 58.944 | 34.615 | 3.98 | 0.00 | 0.00 | 1.52 |
394 | 396 | 7.722728 | TGCTTCTTGATATCTCCTGCATTTTAT | 59.277 | 33.333 | 3.98 | 0.00 | 0.00 | 1.40 |
424 | 426 | 2.391616 | TGCTTCTTGACATCGATGCT | 57.608 | 45.000 | 25.11 | 12.36 | 33.14 | 3.79 |
425 | 427 | 2.703416 | TGCTTCTTGACATCGATGCTT | 58.297 | 42.857 | 25.11 | 6.78 | 33.14 | 3.91 |
428 | 430 | 3.125829 | GCTTCTTGACATCGATGCTTTGA | 59.874 | 43.478 | 25.11 | 15.01 | 0.00 | 2.69 |
430 | 432 | 5.007039 | GCTTCTTGACATCGATGCTTTGATA | 59.993 | 40.000 | 25.11 | 5.05 | 0.00 | 2.15 |
431 | 433 | 6.457392 | GCTTCTTGACATCGATGCTTTGATAA | 60.457 | 38.462 | 25.11 | 9.99 | 0.00 | 1.75 |
434 | 436 | 8.837788 | TCTTGACATCGATGCTTTGATAATAT | 57.162 | 30.769 | 25.11 | 0.58 | 0.00 | 1.28 |
435 | 437 | 8.715088 | TCTTGACATCGATGCTTTGATAATATG | 58.285 | 33.333 | 25.11 | 0.00 | 0.00 | 1.78 |
436 | 438 | 7.967890 | TGACATCGATGCTTTGATAATATGT | 57.032 | 32.000 | 25.11 | 1.42 | 0.00 | 2.29 |
437 | 439 | 9.487790 | TTGACATCGATGCTTTGATAATATGTA | 57.512 | 29.630 | 25.11 | 0.00 | 0.00 | 2.29 |
438 | 440 | 9.487790 | TGACATCGATGCTTTGATAATATGTAA | 57.512 | 29.630 | 25.11 | 0.00 | 0.00 | 2.41 |
500 | 967 | 1.661821 | CGTATGCGGCCTAGCTGAC | 60.662 | 63.158 | 0.00 | 0.00 | 37.02 | 3.51 |
533 | 1000 | 0.316204 | GCATGGCCATGGAGTAATGC | 59.684 | 55.000 | 39.72 | 25.06 | 39.16 | 3.56 |
534 | 1001 | 1.991121 | CATGGCCATGGAGTAATGCT | 58.009 | 50.000 | 34.31 | 0.00 | 35.24 | 3.79 |
535 | 1002 | 2.815215 | GCATGGCCATGGAGTAATGCTA | 60.815 | 50.000 | 39.72 | 0.00 | 39.16 | 3.49 |
536 | 1003 | 2.638480 | TGGCCATGGAGTAATGCTAC | 57.362 | 50.000 | 18.40 | 0.00 | 0.00 | 3.58 |
537 | 1004 | 1.843206 | TGGCCATGGAGTAATGCTACA | 59.157 | 47.619 | 18.40 | 0.00 | 43.31 | 2.74 |
538 | 1005 | 2.222027 | GGCCATGGAGTAATGCTACAC | 58.778 | 52.381 | 18.40 | 0.00 | 41.66 | 2.90 |
539 | 1006 | 1.867233 | GCCATGGAGTAATGCTACACG | 59.133 | 52.381 | 18.40 | 0.00 | 41.66 | 4.49 |
540 | 1007 | 2.741878 | GCCATGGAGTAATGCTACACGT | 60.742 | 50.000 | 18.40 | 0.00 | 41.66 | 4.49 |
541 | 1008 | 3.491964 | GCCATGGAGTAATGCTACACGTA | 60.492 | 47.826 | 18.40 | 0.00 | 41.66 | 3.57 |
542 | 1009 | 4.049186 | CCATGGAGTAATGCTACACGTAC | 58.951 | 47.826 | 5.56 | 0.00 | 41.66 | 3.67 |
543 | 1010 | 4.440940 | CCATGGAGTAATGCTACACGTACA | 60.441 | 45.833 | 5.56 | 0.00 | 41.66 | 2.90 |
544 | 1011 | 4.787260 | TGGAGTAATGCTACACGTACAA | 57.213 | 40.909 | 0.00 | 0.00 | 31.86 | 2.41 |
545 | 1012 | 5.136816 | TGGAGTAATGCTACACGTACAAA | 57.863 | 39.130 | 0.00 | 0.00 | 31.86 | 2.83 |
546 | 1013 | 4.925054 | TGGAGTAATGCTACACGTACAAAC | 59.075 | 41.667 | 0.00 | 0.00 | 31.86 | 2.93 |
547 | 1014 | 4.925054 | GGAGTAATGCTACACGTACAAACA | 59.075 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
548 | 1015 | 5.406175 | GGAGTAATGCTACACGTACAAACAA | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
549 | 1016 | 6.400727 | GGAGTAATGCTACACGTACAAACAAG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
550 | 1017 | 5.987347 | AGTAATGCTACACGTACAAACAAGT | 59.013 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
551 | 1018 | 5.744666 | AATGCTACACGTACAAACAAGTT | 57.255 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
552 | 1019 | 6.847956 | AATGCTACACGTACAAACAAGTTA | 57.152 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
553 | 1020 | 5.640218 | TGCTACACGTACAAACAAGTTAC | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 2.50 |
554 | 1021 | 5.107824 | TGCTACACGTACAAACAAGTTACA | 58.892 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
555 | 1022 | 5.754406 | TGCTACACGTACAAACAAGTTACAT | 59.246 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
556 | 1023 | 6.068931 | GCTACACGTACAAACAAGTTACATG | 58.931 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
557 | 1024 | 5.412526 | ACACGTACAAACAAGTTACATGG | 57.587 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
558 | 1025 | 4.877251 | ACACGTACAAACAAGTTACATGGT | 59.123 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
559 | 1026 | 5.354792 | ACACGTACAAACAAGTTACATGGTT | 59.645 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
560 | 1027 | 6.127952 | ACACGTACAAACAAGTTACATGGTTT | 60.128 | 34.615 | 0.00 | 0.00 | 34.03 | 3.27 |
561 | 1028 | 6.748198 | CACGTACAAACAAGTTACATGGTTTT | 59.252 | 34.615 | 0.00 | 0.00 | 31.57 | 2.43 |
562 | 1029 | 7.909121 | CACGTACAAACAAGTTACATGGTTTTA | 59.091 | 33.333 | 0.00 | 0.00 | 31.57 | 1.52 |
563 | 1030 | 8.623030 | ACGTACAAACAAGTTACATGGTTTTAT | 58.377 | 29.630 | 0.00 | 0.00 | 31.57 | 1.40 |
571 | 1038 | 9.020731 | ACAAGTTACATGGTTTTATAAAGAGGG | 57.979 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
572 | 1039 | 9.020731 | CAAGTTACATGGTTTTATAAAGAGGGT | 57.979 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
573 | 1040 | 9.596308 | AAGTTACATGGTTTTATAAAGAGGGTT | 57.404 | 29.630 | 0.00 | 0.00 | 0.00 | 4.11 |
610 | 1077 | 1.513622 | GTGAGAAGAGAGGGGTCGC | 59.486 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
644 | 1114 | 2.757917 | GGAGAGCCTGTCGCCTCT | 60.758 | 66.667 | 0.00 | 0.00 | 41.83 | 3.69 |
710 | 1455 | 3.244387 | GCTGTTCCTCTTCCTTCAGTTCT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
748 | 1507 | 2.027192 | GCACACAATCCCTCCTTCAGTA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
759 | 1518 | 4.081642 | CCCTCCTTCAGTACTTCATTTCGA | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
778 | 1537 | 2.139118 | GAAGCTCCACTGAGTGAACAC | 58.861 | 52.381 | 15.33 | 0.44 | 40.95 | 3.32 |
960 | 1760 | 1.108132 | GTTTTGTTGTACCGGCCCCA | 61.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
1142 | 1970 | 1.792006 | CTGTCACCCACGGAAACTAC | 58.208 | 55.000 | 0.00 | 0.00 | 32.23 | 2.73 |
1156 | 1984 | 5.757808 | ACGGAAACTACTAGTACTAGCTAGC | 59.242 | 44.000 | 26.54 | 6.62 | 41.49 | 3.42 |
1200 | 2029 | 0.529773 | GATCATGGCGTTAGTGCGGA | 60.530 | 55.000 | 0.00 | 0.00 | 35.06 | 5.54 |
1540 | 2378 | 3.896133 | GCCGGCGTCGACCATAGA | 61.896 | 66.667 | 12.58 | 0.00 | 39.00 | 1.98 |
1980 | 2860 | 2.430367 | GAGCTGGTTCCCAACGGT | 59.570 | 61.111 | 0.00 | 0.00 | 30.80 | 4.83 |
2135 | 3133 | 3.902063 | CGCCATCTTGTCGTCGCG | 61.902 | 66.667 | 0.00 | 0.00 | 0.00 | 5.87 |
2177 | 3212 | 1.677637 | GCTTAGCTAGCCTCCGTGGT | 61.678 | 60.000 | 12.13 | 0.00 | 44.48 | 4.16 |
2301 | 3836 | 4.591924 | GCCACTATGTACCCTATTACAGGT | 59.408 | 45.833 | 0.00 | 0.00 | 43.80 | 4.00 |
2320 | 3855 | 3.965347 | AGGTGACCTAGGTTGCGTTATAT | 59.035 | 43.478 | 17.53 | 0.00 | 28.47 | 0.86 |
2321 | 3856 | 4.038883 | AGGTGACCTAGGTTGCGTTATATC | 59.961 | 45.833 | 17.53 | 0.00 | 28.47 | 1.63 |
2322 | 3857 | 4.038883 | GGTGACCTAGGTTGCGTTATATCT | 59.961 | 45.833 | 17.53 | 0.00 | 0.00 | 1.98 |
2323 | 3858 | 5.452917 | GGTGACCTAGGTTGCGTTATATCTT | 60.453 | 44.000 | 17.53 | 0.00 | 0.00 | 2.40 |
2324 | 3859 | 6.239120 | GGTGACCTAGGTTGCGTTATATCTTA | 60.239 | 42.308 | 17.53 | 0.00 | 0.00 | 2.10 |
2325 | 3860 | 7.376615 | GTGACCTAGGTTGCGTTATATCTTAT | 58.623 | 38.462 | 17.53 | 0.00 | 0.00 | 1.73 |
2326 | 3861 | 8.517878 | GTGACCTAGGTTGCGTTATATCTTATA | 58.482 | 37.037 | 17.53 | 0.00 | 0.00 | 0.98 |
2478 | 4016 | 0.889186 | GCGAACATTCACTGTGGGGT | 60.889 | 55.000 | 8.11 | 1.23 | 38.39 | 4.95 |
2545 | 4083 | 1.540146 | GGCAATTTCAAGCCCAACGTT | 60.540 | 47.619 | 0.00 | 0.00 | 45.18 | 3.99 |
2655 | 4198 | 9.434420 | CATGCCTTTATAAAAGGATGTTTTCAA | 57.566 | 29.630 | 20.05 | 0.00 | 39.81 | 2.69 |
2674 | 4223 | 5.018539 | TCAATTAGGGAATACCACGAGTG | 57.981 | 43.478 | 0.00 | 0.00 | 43.89 | 3.51 |
2751 | 4306 | 1.565067 | TTCTCTTTACGGGGAGGGAC | 58.435 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2786 | 4717 | 1.522806 | GTTGTCTCACCCGCACACA | 60.523 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
2801 | 4732 | 4.332543 | CCGCACACATCTTCAAGCTTTATA | 59.667 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
2842 | 4774 | 4.907269 | TGAGCCATGAGGTAAGATAATGGA | 59.093 | 41.667 | 4.21 | 0.00 | 40.23 | 3.41 |
2884 | 4816 | 6.603201 | TCGAAAGATATCCCTTCAAATTGCTT | 59.397 | 34.615 | 13.03 | 0.00 | 33.31 | 3.91 |
2979 | 4915 | 5.999205 | AATCCAAATTGAGCACAACCATA | 57.001 | 34.783 | 0.00 | 0.00 | 38.90 | 2.74 |
2980 | 4916 | 5.999205 | ATCCAAATTGAGCACAACCATAA | 57.001 | 34.783 | 0.00 | 0.00 | 38.90 | 1.90 |
3103 | 5039 | 9.463443 | AACATTAAGCACAAAACTAAAGCTAAG | 57.537 | 29.630 | 0.00 | 0.00 | 34.66 | 2.18 |
3208 | 5144 | 1.658994 | GTGGAAGGACAACACGTTGA | 58.341 | 50.000 | 16.48 | 0.00 | 42.93 | 3.18 |
3213 | 5149 | 1.229428 | AGGACAACACGTTGATGCTG | 58.771 | 50.000 | 16.48 | 0.00 | 42.93 | 4.41 |
3222 | 5158 | 1.153706 | GTTGATGCTGCCATGCACC | 60.154 | 57.895 | 0.00 | 0.00 | 46.33 | 5.01 |
3259 | 5196 | 1.238896 | TCCTCATCCTTCCCCCTCCT | 61.239 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3265 | 5202 | 1.162951 | TCCTTCCCCCTCCTCTTCCT | 61.163 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3276 | 5213 | 1.887198 | TCCTCTTCCTCTGACGACAAC | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
3284 | 5221 | 2.404215 | CTCTGACGACAACGATTTGGT | 58.596 | 47.619 | 0.00 | 0.00 | 42.66 | 3.67 |
3319 | 5256 | 1.862138 | TCCTCCTCCACCTCCTCCA | 60.862 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3323 | 5260 | 0.263172 | TCCTCCACCTCCTCCATCTC | 59.737 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3330 | 5267 | 1.227089 | CTCCTCCATCTCGCCGTTG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.10 |
3350 | 5288 | 2.814183 | ATTCTGGCACGACGACCGAC | 62.814 | 60.000 | 0.00 | 0.00 | 41.76 | 4.79 |
3363 | 5301 | 1.659098 | CGACCGACCAAAGATGTTAGC | 59.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
3371 | 5309 | 5.289675 | CGACCAAAGATGTTAGCAGAAGTAG | 59.710 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3378 | 5316 | 3.074412 | TGTTAGCAGAAGTAGGCAAAGC | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
58 | 60 | 8.732746 | AATGTATACAACCAACTTACTCCATC | 57.267 | 34.615 | 10.14 | 0.00 | 0.00 | 3.51 |
60 | 62 | 8.927675 | AAAATGTATACAACCAACTTACTCCA | 57.072 | 30.769 | 10.14 | 0.00 | 0.00 | 3.86 |
71 | 73 | 9.726438 | AGCCTATCATCTAAAATGTATACAACC | 57.274 | 33.333 | 10.14 | 0.00 | 0.00 | 3.77 |
107 | 109 | 9.701098 | GTATCCGTATAACTTGTCATAAATGGA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
124 | 126 | 4.343239 | GGGTTCTTACACTGGTATCCGTAT | 59.657 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
125 | 127 | 3.701040 | GGGTTCTTACACTGGTATCCGTA | 59.299 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
126 | 128 | 2.498885 | GGGTTCTTACACTGGTATCCGT | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
127 | 129 | 2.498481 | TGGGTTCTTACACTGGTATCCG | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
128 | 130 | 4.163458 | TGATGGGTTCTTACACTGGTATCC | 59.837 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
129 | 131 | 5.353394 | TGATGGGTTCTTACACTGGTATC | 57.647 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
130 | 132 | 5.772393 | TTGATGGGTTCTTACACTGGTAT | 57.228 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
131 | 133 | 5.772393 | ATTGATGGGTTCTTACACTGGTA | 57.228 | 39.130 | 0.00 | 0.00 | 0.00 | 3.25 |
132 | 134 | 4.657814 | ATTGATGGGTTCTTACACTGGT | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
133 | 135 | 7.461182 | TTTTATTGATGGGTTCTTACACTGG | 57.539 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
134 | 136 | 7.029563 | GCTTTTATTGATGGGTTCTTACACTG | 58.970 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
135 | 137 | 6.152831 | GGCTTTTATTGATGGGTTCTTACACT | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
136 | 138 | 6.071616 | TGGCTTTTATTGATGGGTTCTTACAC | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
137 | 139 | 6.013379 | TGGCTTTTATTGATGGGTTCTTACA | 58.987 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
138 | 140 | 6.524101 | TGGCTTTTATTGATGGGTTCTTAC | 57.476 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
139 | 141 | 7.125391 | AGATGGCTTTTATTGATGGGTTCTTA | 58.875 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
140 | 142 | 5.960202 | AGATGGCTTTTATTGATGGGTTCTT | 59.040 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
141 | 143 | 5.522641 | AGATGGCTTTTATTGATGGGTTCT | 58.477 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
142 | 144 | 5.859205 | AGATGGCTTTTATTGATGGGTTC | 57.141 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
143 | 145 | 6.625532 | AAAGATGGCTTTTATTGATGGGTT | 57.374 | 33.333 | 0.00 | 0.00 | 41.43 | 4.11 |
171 | 173 | 8.654997 | ACTCATAGTAGCATAACATCCATCTTT | 58.345 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
180 | 182 | 6.160576 | TGCATGACTCATAGTAGCATAACA | 57.839 | 37.500 | 0.00 | 0.00 | 29.57 | 2.41 |
185 | 187 | 4.942761 | TCATGCATGACTCATAGTAGCA | 57.057 | 40.909 | 25.42 | 0.00 | 35.87 | 3.49 |
197 | 199 | 8.782339 | ATCATCTTATTTATCGTCATGCATGA | 57.218 | 30.769 | 25.42 | 25.42 | 0.00 | 3.07 |
198 | 200 | 9.836076 | AAATCATCTTATTTATCGTCATGCATG | 57.164 | 29.630 | 21.07 | 21.07 | 0.00 | 4.06 |
284 | 286 | 9.765795 | GGGGAGTATTATACATTAGTATCATGC | 57.234 | 37.037 | 5.11 | 0.00 | 41.15 | 4.06 |
294 | 296 | 9.232882 | TCCTTAAAGTGGGGAGTATTATACATT | 57.767 | 33.333 | 5.11 | 0.00 | 0.00 | 2.71 |
295 | 297 | 8.808240 | TCCTTAAAGTGGGGAGTATTATACAT | 57.192 | 34.615 | 5.11 | 0.00 | 0.00 | 2.29 |
296 | 298 | 8.488668 | GTTCCTTAAAGTGGGGAGTATTATACA | 58.511 | 37.037 | 5.11 | 0.00 | 0.00 | 2.29 |
297 | 299 | 8.488668 | TGTTCCTTAAAGTGGGGAGTATTATAC | 58.511 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
298 | 300 | 8.626917 | TGTTCCTTAAAGTGGGGAGTATTATA | 57.373 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
299 | 301 | 7.519347 | TGTTCCTTAAAGTGGGGAGTATTAT | 57.481 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
300 | 302 | 6.956102 | TGTTCCTTAAAGTGGGGAGTATTA | 57.044 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
301 | 303 | 5.853572 | TGTTCCTTAAAGTGGGGAGTATT | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
302 | 304 | 6.677076 | AGTATGTTCCTTAAAGTGGGGAGTAT | 59.323 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
303 | 305 | 6.027482 | AGTATGTTCCTTAAAGTGGGGAGTA | 58.973 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
304 | 306 | 4.850386 | AGTATGTTCCTTAAAGTGGGGAGT | 59.150 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
305 | 307 | 5.437191 | AGTATGTTCCTTAAAGTGGGGAG | 57.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
306 | 308 | 6.956102 | TTAGTATGTTCCTTAAAGTGGGGA | 57.044 | 37.500 | 0.00 | 0.00 | 0.00 | 4.81 |
307 | 309 | 7.116736 | ACATTAGTATGTTCCTTAAAGTGGGG | 58.883 | 38.462 | 0.00 | 0.00 | 42.29 | 4.96 |
329 | 331 | 9.838339 | CAAGAAGTTATTAGGGAGTATCAACAT | 57.162 | 33.333 | 0.00 | 0.00 | 36.25 | 2.71 |
330 | 332 | 9.042450 | TCAAGAAGTTATTAGGGAGTATCAACA | 57.958 | 33.333 | 0.00 | 0.00 | 36.25 | 3.33 |
331 | 333 | 9.315525 | GTCAAGAAGTTATTAGGGAGTATCAAC | 57.684 | 37.037 | 0.00 | 0.00 | 36.25 | 3.18 |
332 | 334 | 9.042450 | TGTCAAGAAGTTATTAGGGAGTATCAA | 57.958 | 33.333 | 0.00 | 0.00 | 36.25 | 2.57 |
333 | 335 | 8.475639 | GTGTCAAGAAGTTATTAGGGAGTATCA | 58.524 | 37.037 | 0.00 | 0.00 | 36.25 | 2.15 |
334 | 336 | 8.697292 | AGTGTCAAGAAGTTATTAGGGAGTATC | 58.303 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
335 | 337 | 8.478877 | CAGTGTCAAGAAGTTATTAGGGAGTAT | 58.521 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
336 | 338 | 7.672660 | TCAGTGTCAAGAAGTTATTAGGGAGTA | 59.327 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
337 | 339 | 6.497259 | TCAGTGTCAAGAAGTTATTAGGGAGT | 59.503 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
338 | 340 | 6.936279 | TCAGTGTCAAGAAGTTATTAGGGAG | 58.064 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
339 | 341 | 6.928348 | TCAGTGTCAAGAAGTTATTAGGGA | 57.072 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
340 | 342 | 6.037610 | GCATCAGTGTCAAGAAGTTATTAGGG | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.53 |
341 | 343 | 6.595326 | TGCATCAGTGTCAAGAAGTTATTAGG | 59.405 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
342 | 344 | 7.332926 | AGTGCATCAGTGTCAAGAAGTTATTAG | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
343 | 345 | 7.118245 | CAGTGCATCAGTGTCAAGAAGTTATTA | 59.882 | 37.037 | 0.00 | 0.00 | 30.89 | 0.98 |
344 | 346 | 6.000219 | AGTGCATCAGTGTCAAGAAGTTATT | 59.000 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
360 | 362 | 5.032327 | AGATATCAAGAAGCAGTGCATCA | 57.968 | 39.130 | 21.40 | 2.32 | 0.00 | 3.07 |
365 | 367 | 3.808726 | GCAGGAGATATCAAGAAGCAGTG | 59.191 | 47.826 | 5.32 | 0.00 | 0.00 | 3.66 |
411 | 413 | 8.382030 | ACATATTATCAAAGCATCGATGTCAA | 57.618 | 30.769 | 25.47 | 8.60 | 0.00 | 3.18 |
428 | 430 | 7.095271 | GCGGCCATGCAAAAATTTACATATTAT | 60.095 | 33.333 | 2.24 | 0.00 | 34.15 | 1.28 |
430 | 432 | 5.007528 | GCGGCCATGCAAAAATTTACATATT | 59.992 | 36.000 | 2.24 | 0.00 | 34.15 | 1.28 |
431 | 433 | 4.511082 | GCGGCCATGCAAAAATTTACATAT | 59.489 | 37.500 | 2.24 | 0.00 | 34.15 | 1.78 |
434 | 436 | 2.072298 | GCGGCCATGCAAAAATTTACA | 58.928 | 42.857 | 2.24 | 0.00 | 34.15 | 2.41 |
435 | 437 | 2.072298 | TGCGGCCATGCAAAAATTTAC | 58.928 | 42.857 | 2.24 | 0.00 | 43.02 | 2.01 |
436 | 438 | 2.462456 | TGCGGCCATGCAAAAATTTA | 57.538 | 40.000 | 2.24 | 0.00 | 43.02 | 1.40 |
437 | 439 | 3.319135 | TGCGGCCATGCAAAAATTT | 57.681 | 42.105 | 2.24 | 0.00 | 43.02 | 1.82 |
449 | 591 | 1.202302 | GCCTTCTCTTTATTTGCGGCC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
483 | 625 | 1.301009 | GGTCAGCTAGGCCGCATAC | 60.301 | 63.158 | 5.37 | 2.64 | 28.17 | 2.39 |
519 | 986 | 1.867233 | CGTGTAGCATTACTCCATGGC | 59.133 | 52.381 | 6.96 | 0.00 | 0.00 | 4.40 |
520 | 987 | 3.179443 | ACGTGTAGCATTACTCCATGG | 57.821 | 47.619 | 4.97 | 4.97 | 0.00 | 3.66 |
521 | 988 | 4.678622 | TGTACGTGTAGCATTACTCCATG | 58.321 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
522 | 989 | 4.994907 | TGTACGTGTAGCATTACTCCAT | 57.005 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
523 | 990 | 4.787260 | TTGTACGTGTAGCATTACTCCA | 57.213 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
524 | 991 | 4.925054 | TGTTTGTACGTGTAGCATTACTCC | 59.075 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
525 | 992 | 6.145048 | ACTTGTTTGTACGTGTAGCATTACTC | 59.855 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
526 | 993 | 5.987347 | ACTTGTTTGTACGTGTAGCATTACT | 59.013 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
527 | 994 | 6.219302 | ACTTGTTTGTACGTGTAGCATTAC | 57.781 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
528 | 995 | 6.847956 | AACTTGTTTGTACGTGTAGCATTA | 57.152 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
529 | 996 | 5.744666 | AACTTGTTTGTACGTGTAGCATT | 57.255 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
530 | 997 | 5.754406 | TGTAACTTGTTTGTACGTGTAGCAT | 59.246 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
531 | 998 | 5.107824 | TGTAACTTGTTTGTACGTGTAGCA | 58.892 | 37.500 | 0.00 | 0.00 | 0.00 | 3.49 |
532 | 999 | 5.640218 | TGTAACTTGTTTGTACGTGTAGC | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
533 | 1000 | 6.201425 | ACCATGTAACTTGTTTGTACGTGTAG | 59.799 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
534 | 1001 | 6.047870 | ACCATGTAACTTGTTTGTACGTGTA | 58.952 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
535 | 1002 | 4.877251 | ACCATGTAACTTGTTTGTACGTGT | 59.123 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
536 | 1003 | 5.412526 | ACCATGTAACTTGTTTGTACGTG | 57.587 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
537 | 1004 | 6.439675 | AAACCATGTAACTTGTTTGTACGT | 57.560 | 33.333 | 0.00 | 0.00 | 30.27 | 3.57 |
545 | 1012 | 9.020731 | CCCTCTTTATAAAACCATGTAACTTGT | 57.979 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
546 | 1013 | 9.020731 | ACCCTCTTTATAAAACCATGTAACTTG | 57.979 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
547 | 1014 | 9.596308 | AACCCTCTTTATAAAACCATGTAACTT | 57.404 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
562 | 1029 | 7.712205 | GCATGCAATCAAATTAACCCTCTTTAT | 59.288 | 33.333 | 14.21 | 0.00 | 0.00 | 1.40 |
563 | 1030 | 7.041107 | GCATGCAATCAAATTAACCCTCTTTA | 58.959 | 34.615 | 14.21 | 0.00 | 0.00 | 1.85 |
564 | 1031 | 5.876460 | GCATGCAATCAAATTAACCCTCTTT | 59.124 | 36.000 | 14.21 | 0.00 | 0.00 | 2.52 |
565 | 1032 | 5.422145 | GCATGCAATCAAATTAACCCTCTT | 58.578 | 37.500 | 14.21 | 0.00 | 0.00 | 2.85 |
566 | 1033 | 4.141869 | GGCATGCAATCAAATTAACCCTCT | 60.142 | 41.667 | 21.36 | 0.00 | 0.00 | 3.69 |
567 | 1034 | 4.122046 | GGCATGCAATCAAATTAACCCTC | 58.878 | 43.478 | 21.36 | 0.00 | 0.00 | 4.30 |
568 | 1035 | 3.518705 | TGGCATGCAATCAAATTAACCCT | 59.481 | 39.130 | 21.36 | 0.00 | 0.00 | 4.34 |
569 | 1036 | 3.622612 | GTGGCATGCAATCAAATTAACCC | 59.377 | 43.478 | 21.36 | 0.00 | 0.00 | 4.11 |
570 | 1037 | 3.306703 | CGTGGCATGCAATCAAATTAACC | 59.693 | 43.478 | 21.36 | 0.00 | 0.00 | 2.85 |
571 | 1038 | 3.925913 | ACGTGGCATGCAATCAAATTAAC | 59.074 | 39.130 | 21.36 | 0.00 | 0.00 | 2.01 |
572 | 1039 | 3.925299 | CACGTGGCATGCAATCAAATTAA | 59.075 | 39.130 | 21.36 | 0.00 | 0.00 | 1.40 |
573 | 1040 | 3.192212 | TCACGTGGCATGCAATCAAATTA | 59.808 | 39.130 | 21.36 | 0.00 | 0.00 | 1.40 |
574 | 1041 | 2.029200 | TCACGTGGCATGCAATCAAATT | 60.029 | 40.909 | 21.36 | 0.00 | 0.00 | 1.82 |
575 | 1042 | 1.545136 | TCACGTGGCATGCAATCAAAT | 59.455 | 42.857 | 21.36 | 0.00 | 0.00 | 2.32 |
576 | 1043 | 0.957362 | TCACGTGGCATGCAATCAAA | 59.043 | 45.000 | 21.36 | 0.00 | 0.00 | 2.69 |
577 | 1044 | 0.522626 | CTCACGTGGCATGCAATCAA | 59.477 | 50.000 | 21.36 | 0.00 | 0.00 | 2.57 |
578 | 1045 | 0.321475 | TCTCACGTGGCATGCAATCA | 60.321 | 50.000 | 21.36 | 5.42 | 0.00 | 2.57 |
579 | 1046 | 0.804364 | TTCTCACGTGGCATGCAATC | 59.196 | 50.000 | 21.36 | 7.93 | 0.00 | 2.67 |
580 | 1047 | 0.806868 | CTTCTCACGTGGCATGCAAT | 59.193 | 50.000 | 21.36 | 0.00 | 0.00 | 3.56 |
581 | 1048 | 0.250252 | TCTTCTCACGTGGCATGCAA | 60.250 | 50.000 | 21.36 | 4.92 | 0.00 | 4.08 |
582 | 1049 | 0.671472 | CTCTTCTCACGTGGCATGCA | 60.671 | 55.000 | 21.36 | 2.54 | 0.00 | 3.96 |
583 | 1050 | 0.390340 | TCTCTTCTCACGTGGCATGC | 60.390 | 55.000 | 17.00 | 9.90 | 0.00 | 4.06 |
584 | 1051 | 1.638133 | CTCTCTTCTCACGTGGCATG | 58.362 | 55.000 | 17.00 | 4.87 | 0.00 | 4.06 |
585 | 1052 | 0.534412 | CCTCTCTTCTCACGTGGCAT | 59.466 | 55.000 | 17.00 | 0.00 | 0.00 | 4.40 |
586 | 1053 | 1.536073 | CCCTCTCTTCTCACGTGGCA | 61.536 | 60.000 | 17.00 | 0.00 | 0.00 | 4.92 |
610 | 1077 | 4.214383 | CCACGCGCTGCAGATTCG | 62.214 | 66.667 | 20.43 | 18.38 | 0.00 | 3.34 |
690 | 1160 | 3.711704 | ACAGAACTGAAGGAAGAGGAACA | 59.288 | 43.478 | 8.87 | 0.00 | 0.00 | 3.18 |
759 | 1518 | 1.486310 | TGTGTTCACTCAGTGGAGCTT | 59.514 | 47.619 | 4.57 | 0.00 | 45.42 | 3.74 |
778 | 1537 | 1.597027 | GGTATCGGGCAATCGGGTG | 60.597 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
1126 | 1954 | 2.880443 | ACTAGTAGTTTCCGTGGGTGA | 58.120 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1142 | 1970 | 6.996509 | ACAGTACCTAGCTAGCTAGTACTAG | 58.003 | 44.000 | 35.49 | 31.68 | 43.22 | 2.57 |
1156 | 1984 | 4.451774 | GGATCACGTAGCTACAGTACCTAG | 59.548 | 50.000 | 23.21 | 7.10 | 0.00 | 3.02 |
1163 | 1991 | 3.565902 | TGATCAGGATCACGTAGCTACAG | 59.434 | 47.826 | 23.21 | 17.17 | 42.42 | 2.74 |
1164 | 1992 | 3.551846 | TGATCAGGATCACGTAGCTACA | 58.448 | 45.455 | 23.21 | 4.75 | 42.42 | 2.74 |
1200 | 2029 | 0.821517 | TCGTACATCACCATCGGCTT | 59.178 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1260 | 2089 | 4.112341 | GTCGTGGTCGCCGTAGCT | 62.112 | 66.667 | 0.00 | 0.00 | 36.60 | 3.32 |
1559 | 2397 | 0.319728 | TCTGAGTCAGGCTGAAGCAC | 59.680 | 55.000 | 20.62 | 7.41 | 44.36 | 4.40 |
1778 | 2622 | 2.925706 | TTGGGCGAGCTGGTGGTA | 60.926 | 61.111 | 0.00 | 0.00 | 0.00 | 3.25 |
1803 | 2647 | 4.927782 | TGCGGTGAGGCTTTGCGT | 62.928 | 61.111 | 0.00 | 0.00 | 0.00 | 5.24 |
1832 | 2676 | 1.804151 | GCAGTACAAAGATTCGGTGCA | 59.196 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2089 | 3075 | 2.642183 | TAGATCTCCGGCGCCCTTCT | 62.642 | 60.000 | 23.46 | 17.24 | 0.00 | 2.85 |
2093 | 3079 | 3.686045 | CCTAGATCTCCGGCGCCC | 61.686 | 72.222 | 23.46 | 5.24 | 0.00 | 6.13 |
2135 | 3133 | 1.303643 | CAGTTCAGTTGCCCCCTCC | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
2177 | 3212 | 8.701908 | ATCTCTACCATATCCTTGTACGTTTA | 57.298 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2301 | 3836 | 5.864418 | AAGATATAACGCAACCTAGGTCA | 57.136 | 39.130 | 16.64 | 0.00 | 0.00 | 4.02 |
2321 | 3856 | 9.066939 | GCATCAGATCAAGTACGTACATATAAG | 57.933 | 37.037 | 26.55 | 11.15 | 0.00 | 1.73 |
2322 | 3857 | 8.573035 | TGCATCAGATCAAGTACGTACATATAA | 58.427 | 33.333 | 26.55 | 8.38 | 0.00 | 0.98 |
2323 | 3858 | 8.106247 | TGCATCAGATCAAGTACGTACATATA | 57.894 | 34.615 | 26.55 | 10.06 | 0.00 | 0.86 |
2324 | 3859 | 6.981722 | TGCATCAGATCAAGTACGTACATAT | 58.018 | 36.000 | 26.55 | 16.08 | 0.00 | 1.78 |
2325 | 3860 | 6.039382 | ACTGCATCAGATCAAGTACGTACATA | 59.961 | 38.462 | 26.55 | 12.14 | 35.18 | 2.29 |
2326 | 3861 | 5.163509 | ACTGCATCAGATCAAGTACGTACAT | 60.164 | 40.000 | 26.55 | 13.27 | 35.18 | 2.29 |
2478 | 4016 | 1.927895 | AAACGTTCGCAATTGCCAAA | 58.072 | 40.000 | 24.24 | 15.71 | 37.91 | 3.28 |
2545 | 4083 | 8.637099 | TGTCATGTAAATTCAAATCCAGTTTCA | 58.363 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2589 | 4127 | 5.833131 | AGTTCATCACATTGGTAGTTTGGTT | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2627 | 4166 | 6.543430 | AACATCCTTTTATAAAGGCATGCA | 57.457 | 33.333 | 21.36 | 0.00 | 37.34 | 3.96 |
2628 | 4167 | 7.548780 | TGAAAACATCCTTTTATAAAGGCATGC | 59.451 | 33.333 | 9.90 | 9.90 | 37.34 | 4.06 |
2655 | 4198 | 2.223971 | CGCACTCGTGGTATTCCCTAAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2674 | 4223 | 0.577269 | CCTGCACGAGTAATTAGCGC | 59.423 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
2725 | 4280 | 4.381718 | CCTCCCCGTAAAGAGAAACAGTAG | 60.382 | 50.000 | 0.00 | 0.00 | 31.43 | 2.57 |
2730 | 4285 | 1.904537 | TCCCTCCCCGTAAAGAGAAAC | 59.095 | 52.381 | 0.00 | 0.00 | 31.43 | 2.78 |
2751 | 4306 | 2.028567 | ACAACAATATTTGCAACCCCCG | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
2801 | 4732 | 7.655521 | TGGCTCATACAATACAAGTAGTAGT | 57.344 | 36.000 | 0.00 | 0.00 | 35.85 | 2.73 |
2842 | 4774 | 2.242043 | TCGAGGGTTCGGTTAGAGTTT | 58.758 | 47.619 | 0.00 | 0.00 | 46.67 | 2.66 |
3103 | 5039 | 9.797473 | CTTGTTTTAGCTTAAATTTAGCTTTGC | 57.203 | 29.630 | 20.06 | 11.62 | 46.42 | 3.68 |
3169 | 5105 | 1.028905 | CAGTAGAAGGAGGAGGAGCG | 58.971 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3259 | 5196 | 1.601166 | TCGTTGTCGTCAGAGGAAGA | 58.399 | 50.000 | 0.00 | 0.00 | 38.33 | 2.87 |
3265 | 5202 | 2.131972 | CACCAAATCGTTGTCGTCAGA | 58.868 | 47.619 | 0.00 | 0.00 | 38.33 | 3.27 |
3276 | 5213 | 1.140161 | CCATGCTGCCACCAAATCG | 59.860 | 57.895 | 0.00 | 0.00 | 0.00 | 3.34 |
3284 | 5221 | 1.304381 | GAGAAACCCCATGCTGCCA | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
3319 | 5256 | 0.811616 | GCCAGAATCAACGGCGAGAT | 60.812 | 55.000 | 16.62 | 13.93 | 35.79 | 2.75 |
3330 | 5267 | 2.158959 | CGGTCGTCGTGCCAGAATC | 61.159 | 63.158 | 8.73 | 0.00 | 0.00 | 2.52 |
3350 | 5288 | 4.333926 | GCCTACTTCTGCTAACATCTTTGG | 59.666 | 45.833 | 0.00 | 0.00 | 0.00 | 3.28 |
3352 | 5290 | 5.165961 | TGCCTACTTCTGCTAACATCTTT | 57.834 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3363 | 5301 | 2.094894 | CACATCGCTTTGCCTACTTCTG | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3371 | 5309 | 0.955428 | TCTCCACACATCGCTTTGCC | 60.955 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3378 | 5316 | 1.812922 | GGCTGCTCTCCACACATCG | 60.813 | 63.158 | 0.00 | 0.00 | 0.00 | 3.84 |
3402 | 5340 | 0.751643 | GTTGCCGCCCTATTCCACAT | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.