Multiple sequence alignment - TraesCS6D01G256200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G256200 chr6D 100.000 8514 0 0 1 8514 361540676 361532163 0.000000e+00 15723.0
1 TraesCS6D01G256200 chr6A 96.830 3691 67 23 3956 7617 502715165 502711496 0.000000e+00 6122.0
2 TraesCS6D01G256200 chr6A 96.670 2282 42 11 1693 3946 502717494 502715219 0.000000e+00 3762.0
3 TraesCS6D01G256200 chr6A 94.078 1182 44 18 389 1552 502718807 502717634 0.000000e+00 1772.0
4 TraesCS6D01G256200 chr6A 93.333 195 10 2 206 397 502719050 502718856 1.400000e-72 285.0
5 TraesCS6D01G256200 chr6A 94.737 76 3 1 7644 7718 502683119 502683044 5.400000e-22 117.0
6 TraesCS6D01G256200 chr6B 96.458 3698 78 15 4134 7797 543229188 543225510 0.000000e+00 6054.0
7 TraesCS6D01G256200 chr6B 97.312 1897 45 6 2053 3946 543231221 543229328 0.000000e+00 3216.0
8 TraesCS6D01G256200 chr6B 92.570 2140 104 37 2 2121 543233326 543231222 0.000000e+00 3020.0
9 TraesCS6D01G256200 chr6B 86.022 279 23 5 8245 8511 543225464 543225190 1.400000e-72 285.0
10 TraesCS6D01G256200 chr6B 88.024 167 17 2 8078 8244 469167755 469167592 2.420000e-45 195.0
11 TraesCS6D01G256200 chr6B 87.952 166 17 1 8078 8243 69452506 69452668 8.720000e-45 193.0
12 TraesCS6D01G256200 chr6B 90.805 87 3 1 3956 4037 543229274 543229188 2.510000e-20 111.0
13 TraesCS6D01G256200 chr6B 91.837 49 3 1 4089 4136 325033198 325033150 5.520000e-07 67.6
14 TraesCS6D01G256200 chr6B 84.375 64 4 4 3941 3999 113298929 113298867 3.320000e-04 58.4
15 TraesCS6D01G256200 chr2B 91.667 192 12 3 6636 6826 543161008 543161196 6.550000e-66 263.0
16 TraesCS6D01G256200 chr2B 89.796 196 14 5 6636 6829 743317973 743317782 6.600000e-61 246.0
17 TraesCS6D01G256200 chr2B 94.737 114 6 0 6713 6826 87418404 87418517 2.440000e-40 178.0
18 TraesCS6D01G256200 chr1D 93.413 167 8 2 6636 6802 366163866 366163703 2.370000e-60 244.0
19 TraesCS6D01G256200 chr5B 92.814 167 9 2 6636 6802 11359682 11359845 1.100000e-58 239.0
20 TraesCS6D01G256200 chr5B 95.238 42 2 0 6785 6826 11360073 11360114 5.520000e-07 67.6
21 TraesCS6D01G256200 chrUn 89.535 172 17 1 8078 8249 84315699 84315869 5.180000e-52 217.0
22 TraesCS6D01G256200 chr3A 91.139 158 11 2 6645 6802 733282435 733282281 2.410000e-50 211.0
23 TraesCS6D01G256200 chr3A 87.425 167 19 2 8078 8243 733928994 733929159 3.140000e-44 191.0
24 TraesCS6D01G256200 chr3A 95.349 43 2 0 6787 6829 733282057 733282015 1.530000e-07 69.4
25 TraesCS6D01G256200 chr3B 89.222 167 17 1 8078 8243 694173038 694173204 3.110000e-49 207.0
26 TraesCS6D01G256200 chr3B 89.157 166 15 1 8078 8243 652493280 652493118 4.030000e-48 204.0
27 TraesCS6D01G256200 chr3B 87.324 71 7 2 4036 4105 497536147 497536216 7.080000e-11 80.5
28 TraesCS6D01G256200 chr3B 93.182 44 2 1 3941 3983 636452093 636452050 7.130000e-06 63.9
29 TraesCS6D01G256200 chr3B 93.182 44 2 1 3941 3983 641529771 641529728 7.130000e-06 63.9
30 TraesCS6D01G256200 chr7A 88.024 167 16 1 8078 8244 101842273 101842435 2.420000e-45 195.0
31 TraesCS6D01G256200 chr7A 87.879 165 19 1 8078 8242 620397253 620397090 8.720000e-45 193.0
32 TraesCS6D01G256200 chr7A 84.211 57 7 2 3956 4012 407864034 407863980 4.000000e-03 54.7
33 TraesCS6D01G256200 chr3D 87.425 167 19 1 8077 8243 587316361 587316197 3.140000e-44 191.0
34 TraesCS6D01G256200 chr3D 90.141 71 5 2 4036 4105 381973746 381973815 3.270000e-14 91.6
35 TraesCS6D01G256200 chr3D 97.778 45 1 0 3939 3983 464128310 464128354 2.550000e-10 78.7
36 TraesCS6D01G256200 chr5A 89.844 128 10 1 6636 6763 78913180 78913304 2.460000e-35 161.0
37 TraesCS6D01G256200 chr5A 85.135 74 10 1 4064 4136 554549614 554549687 3.300000e-09 75.0
38 TraesCS6D01G256200 chr5A 81.915 94 10 5 6787 6878 78917504 78917592 1.190000e-08 73.1
39 TraesCS6D01G256200 chr5A 95.556 45 0 1 3941 3983 547647517 547647473 4.260000e-08 71.3
40 TraesCS6D01G256200 chr7B 84.314 102 15 1 4036 4136 537461403 537461504 1.960000e-16 99.0
41 TraesCS6D01G256200 chr7B 93.182 44 2 1 3941 3983 296330842 296330885 7.130000e-06 63.9
42 TraesCS6D01G256200 chr4B 78.616 159 26 6 7879 8035 457806240 457806088 1.960000e-16 99.0
43 TraesCS6D01G256200 chr2A 79.612 103 18 3 4036 4136 623071327 623071226 4.260000e-08 71.3
44 TraesCS6D01G256200 chr4A 82.895 76 12 1 4062 4136 208112290 208112365 5.520000e-07 67.6
45 TraesCS6D01G256200 chr1B 77.778 117 19 6 4036 4149 121280905 121280793 1.980000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G256200 chr6D 361532163 361540676 8513 True 15723.00 15723 100.00000 1 8514 1 chr6D.!!$R1 8513
1 TraesCS6D01G256200 chr6A 502711496 502719050 7554 True 2985.25 6122 95.22775 206 7617 4 chr6A.!!$R2 7411
2 TraesCS6D01G256200 chr6B 543225190 543233326 8136 True 2537.20 6054 92.63340 2 8511 5 chr6B.!!$R4 8509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 F
1202 1284 0.390735 TAACCTTCTTTCCGCCGCTC 60.391 55.000 0.00 0.00 0.00 5.03 F
1648 1730 0.036858 GAGCTCGAGCAGGAGGTTTT 60.037 55.000 36.87 14.92 44.25 2.43 F
2493 2668 1.551883 GAGTGGGCAGCCAAATTTGAT 59.448 47.619 19.86 4.94 0.00 2.57 F
3627 3802 3.665190 CTCACAAGAGAAGGTAACCCAC 58.335 50.000 0.00 0.00 44.98 4.61 F
4063 4299 2.030457 CGGAAATACATGTCGGAGCAAC 59.970 50.000 0.00 0.00 0.00 4.17 F
4209 4445 2.987413 TTGTGCTATTTCACTTGCCG 57.013 45.000 0.00 0.00 37.81 5.69 F
4237 4474 3.067461 GCATGTGTAAATTGGCCGGATTA 59.933 43.478 5.05 0.00 0.00 1.75 F
6589 6826 3.795688 TCTCTTGCATTCCTTGGAACT 57.204 42.857 4.00 0.00 31.69 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 1293 1.029947 CGAAATCCCCAAGAACCCCG 61.030 60.000 0.00 0.00 0.00 5.73 R
2160 2335 0.244994 CACTAGCTATAGCCCGCAGG 59.755 60.000 21.17 7.68 43.38 4.85 R
2532 2707 2.260869 TGCAGCTTGTTCCCGCTTC 61.261 57.895 0.00 0.00 33.45 3.86 R
3811 3988 0.681733 AGCAGACTGTTCATCGGTGT 59.318 50.000 3.99 0.00 35.55 4.16 R
5543 5780 2.010497 TCTCGACGATCCTTCAGACTG 58.990 52.381 0.00 0.00 0.00 3.51 R
5887 6124 3.068732 CGGTGATGCTTCCTCTAATCTCA 59.931 47.826 0.00 0.00 0.00 3.27 R
6470 6707 2.361610 CCTGGGGCTTGCGTTGAT 60.362 61.111 0.00 0.00 0.00 2.57 R
6840 7079 0.744414 ATGCACCTGACATACCGCAC 60.744 55.000 0.00 0.00 31.22 5.34 R
7893 8190 0.106967 TGCACCAGTAGCACCACAAA 60.107 50.000 0.00 0.00 37.02 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.141053 GCCTCGATTGTCTAACCCCAT 59.859 52.381 0.00 0.00 0.00 4.00
43 44 2.838736 CCTCGATTGTCTAACCCCATG 58.161 52.381 0.00 0.00 0.00 3.66
64 65 4.237724 TGAAGTCATCACTAAAGTGCTCG 58.762 43.478 5.21 0.00 45.25 5.03
72 73 4.733850 TCACTAAAGTGCTCGAGTGTATG 58.266 43.478 15.13 2.72 45.25 2.39
80 81 4.082190 AGTGCTCGAGTGTATGCTTAGAAA 60.082 41.667 15.13 0.00 0.00 2.52
85 86 5.720202 TCGAGTGTATGCTTAGAAATGTGT 58.280 37.500 0.00 0.00 0.00 3.72
123 124 6.524734 ACTCTCAAATATGAAGTCACACACA 58.475 36.000 0.00 0.00 34.49 3.72
124 125 6.425114 ACTCTCAAATATGAAGTCACACACAC 59.575 38.462 0.00 0.00 34.49 3.82
128 129 5.673337 AATATGAAGTCACACACACACAC 57.327 39.130 0.00 0.00 0.00 3.82
129 130 2.464157 TGAAGTCACACACACACACA 57.536 45.000 0.00 0.00 0.00 3.72
131 132 2.073056 GAAGTCACACACACACACACA 58.927 47.619 0.00 0.00 0.00 3.72
132 133 1.438651 AGTCACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
133 134 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
134 135 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
135 136 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
136 137 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
137 138 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
138 139 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
139 140 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
140 141 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
141 142 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
142 143 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
143 144 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
144 145 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
145 146 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
146 147 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
153 154 2.728839 CACACACACACAAACAAACCAC 59.271 45.455 0.00 0.00 0.00 4.16
169 170 4.632327 AACCACCCCATTTTAATGTTGG 57.368 40.909 10.90 10.90 36.09 3.77
187 188 1.805943 TGGATGTGATGTTTGTGAGCG 59.194 47.619 0.00 0.00 0.00 5.03
188 189 1.806542 GGATGTGATGTTTGTGAGCGT 59.193 47.619 0.00 0.00 0.00 5.07
193 194 3.058983 TGTGATGTTTGTGAGCGTCAATC 60.059 43.478 0.00 0.00 34.41 2.67
197 198 3.064207 TGTTTGTGAGCGTCAATCCTAC 58.936 45.455 0.00 0.00 0.00 3.18
228 229 7.910162 CAGTAAAACCACATATCAAGCATGTAC 59.090 37.037 0.00 0.00 34.88 2.90
256 257 6.270000 TGAAGGTGAGGATGAAGACTAAAGAA 59.730 38.462 0.00 0.00 0.00 2.52
335 336 6.098982 ACACATGAATGGAAAAACCTGGTAAA 59.901 34.615 0.00 0.00 39.86 2.01
337 338 7.171337 CACATGAATGGAAAAACCTGGTAAAAG 59.829 37.037 0.00 0.00 39.86 2.27
357 358 7.881775 AAAAGGGTGCCATATTAAACTCTAG 57.118 36.000 0.00 0.00 0.00 2.43
358 359 5.568620 AGGGTGCCATATTAAACTCTAGG 57.431 43.478 0.00 0.00 0.00 3.02
359 360 4.975794 AGGGTGCCATATTAAACTCTAGGT 59.024 41.667 0.00 0.00 0.00 3.08
360 361 6.148186 AGGGTGCCATATTAAACTCTAGGTA 58.852 40.000 0.00 0.00 0.00 3.08
362 366 7.294958 AGGGTGCCATATTAAACTCTAGGTATT 59.705 37.037 0.00 0.00 0.00 1.89
412 473 7.397892 TGTGAAATTACACCTCAAAAAGACA 57.602 32.000 0.00 0.00 39.69 3.41
456 517 2.358267 AGGTGCCTATCGTAGTTCTTCG 59.642 50.000 0.00 0.00 0.00 3.79
464 525 5.467399 CCTATCGTAGTTCTTCGAGAGACAT 59.533 44.000 19.29 1.90 44.57 3.06
512 577 6.514947 TCTTGAAATTGCACATAAAGCAGTT 58.485 32.000 0.00 0.00 43.75 3.16
515 580 5.691305 TGAAATTGCACATAAAGCAGTTCAC 59.309 36.000 10.39 4.14 43.75 3.18
553 620 7.759489 TCCAATTATACATATCAAACAGGCC 57.241 36.000 0.00 0.00 0.00 5.19
666 733 7.926018 ACTTTAATCAAAGAATGGTTTGACACC 59.074 33.333 0.00 0.00 46.53 4.16
709 776 3.931907 AGCCATTATGGTCAGCACTAA 57.068 42.857 13.28 0.00 40.46 2.24
841 914 5.911280 CCATGATTACATCATCGAAAAGCAC 59.089 40.000 0.00 0.00 46.62 4.40
845 918 1.464608 ACATCATCGAAAAGCACCACG 59.535 47.619 0.00 0.00 0.00 4.94
851 924 2.214347 TCGAAAAGCACCACGAAATGA 58.786 42.857 0.00 0.00 0.00 2.57
852 925 2.223144 TCGAAAAGCACCACGAAATGAG 59.777 45.455 0.00 0.00 0.00 2.90
918 992 2.680913 CCGCTTTTCAGCCAGACGG 61.681 63.158 0.00 0.00 44.06 4.79
984 1063 5.248248 CCCCTCTTTTTCTCTTTCTCTCTCT 59.752 44.000 0.00 0.00 0.00 3.10
985 1064 6.398095 CCCTCTTTTTCTCTTTCTCTCTCTC 58.602 44.000 0.00 0.00 0.00 3.20
1202 1284 0.390735 TAACCTTCTTTCCGCCGCTC 60.391 55.000 0.00 0.00 0.00 5.03
1209 1291 1.956620 CTTTCCGCCGCTCGTTTCTC 61.957 60.000 0.00 0.00 36.19 2.87
1218 1300 2.048877 TCGTTTCTCGCGGGGTTC 60.049 61.111 5.94 0.00 39.67 3.62
1219 1301 2.048503 CGTTTCTCGCGGGGTTCT 60.049 61.111 5.94 0.00 0.00 3.01
1221 1303 1.866925 GTTTCTCGCGGGGTTCTTG 59.133 57.895 5.94 0.00 0.00 3.02
1244 1326 4.381612 GGGGATTTCGAGGGTTTGAAATTC 60.382 45.833 4.69 3.05 44.04 2.17
1294 1376 1.729881 CTTGCTAATGCGGGGCTTC 59.270 57.895 0.00 0.00 43.34 3.86
1350 1432 4.086457 TCTTGGCAATTAGGGTTTCCTTC 58.914 43.478 0.00 0.00 41.56 3.46
1648 1730 0.036858 GAGCTCGAGCAGGAGGTTTT 60.037 55.000 36.87 14.92 44.25 2.43
1658 1740 1.821136 CAGGAGGTTTTGCCCAATCTC 59.179 52.381 0.00 0.00 38.26 2.75
1666 1748 4.883354 GCCCAATCTCTGCCCCCG 62.883 72.222 0.00 0.00 0.00 5.73
1667 1749 4.883354 CCCAATCTCTGCCCCCGC 62.883 72.222 0.00 0.00 0.00 6.13
1780 1870 6.485171 AGATTCACAAGTAAGGCCAACTATT 58.515 36.000 5.01 0.00 0.00 1.73
1781 1871 6.948309 AGATTCACAAGTAAGGCCAACTATTT 59.052 34.615 5.01 0.00 0.00 1.40
1789 1879 9.310716 CAAGTAAGGCCAACTATTTAGTACTAC 57.689 37.037 5.01 0.00 34.99 2.73
1939 2036 5.940192 TGACAATTTCTTGTTAGCACGAT 57.060 34.783 0.00 0.00 45.57 3.73
1946 2043 7.667043 ATTTCTTGTTAGCACGATGAAACTA 57.333 32.000 0.00 0.00 0.00 2.24
2160 2335 4.618920 TGGGTTCTCCTTGTAGAAAGAC 57.381 45.455 0.00 0.00 37.24 3.01
2164 2339 3.963428 TCTCCTTGTAGAAAGACCTGC 57.037 47.619 0.00 0.00 0.00 4.85
2246 2421 9.855021 GTTAAGCAGTGGTGAAAATTATTATGT 57.145 29.630 0.00 0.00 0.00 2.29
2493 2668 1.551883 GAGTGGGCAGCCAAATTTGAT 59.448 47.619 19.86 4.94 0.00 2.57
2532 2707 4.645535 TGACACAAAAGGAGGAGATCTTG 58.354 43.478 0.00 0.00 0.00 3.02
2960 3135 6.721704 AGCACTCCAATTTTTCTTCTTCTT 57.278 33.333 0.00 0.00 0.00 2.52
3592 3767 4.078980 AGGAGGATGATATTGCCAAAAGGT 60.079 41.667 0.00 0.00 0.00 3.50
3627 3802 3.665190 CTCACAAGAGAAGGTAACCCAC 58.335 50.000 0.00 0.00 44.98 4.61
3662 3837 4.439837 GCATTCTTTTCTCCTCATTCTGGC 60.440 45.833 0.00 0.00 0.00 4.85
3679 3854 5.791336 TCTGGCTTATGACGAGTTGATAT 57.209 39.130 0.00 0.00 0.00 1.63
3810 3987 6.546972 AGCTAGTGCAAGAGAAAAAGTAAC 57.453 37.500 0.00 0.00 42.74 2.50
3811 3988 6.055588 AGCTAGTGCAAGAGAAAAAGTAACA 58.944 36.000 0.00 0.00 42.74 2.41
3812 3989 6.017852 AGCTAGTGCAAGAGAAAAAGTAACAC 60.018 38.462 0.00 0.00 42.74 3.32
3867 4049 7.432869 GCATTATGAATAAATGGGTACAAGCA 58.567 34.615 0.00 0.00 35.34 3.91
4063 4299 2.030457 CGGAAATACATGTCGGAGCAAC 59.970 50.000 0.00 0.00 0.00 4.17
4121 4357 7.831691 TCCATTTTTCAGACAAGTATTTCCA 57.168 32.000 0.00 0.00 0.00 3.53
4125 4361 6.539649 TTTTCAGACAAGTATTTCCAGACG 57.460 37.500 0.00 0.00 0.00 4.18
4209 4445 2.987413 TTGTGCTATTTCACTTGCCG 57.013 45.000 0.00 0.00 37.81 5.69
4237 4474 3.067461 GCATGTGTAAATTGGCCGGATTA 59.933 43.478 5.05 0.00 0.00 1.75
4420 4657 5.188327 TCAGTGATCTGATATTGTCGGAC 57.812 43.478 0.00 0.00 44.78 4.79
4505 4742 9.180678 GCAAAAAGACGAGATTTTGAATTAGAA 57.819 29.630 20.21 0.00 45.09 2.10
4526 4763 4.059773 ACTGGAGAGTGAGAGGAAATCT 57.940 45.455 0.00 0.00 42.61 2.40
4537 4774 8.108551 AGTGAGAGGAAATCTTTTGATGAAAG 57.891 34.615 0.00 0.00 44.99 2.62
4679 4916 5.491070 CAGAATGACCTTGATACCAAGTCA 58.509 41.667 0.00 0.72 43.18 3.41
5108 5345 5.121454 GCGTCACAATGAAGAGAAGAGATTT 59.879 40.000 0.00 0.00 0.00 2.17
5887 6124 6.220201 CGGAAATAAACATTCCTTTTGGTGT 58.780 36.000 4.02 0.00 43.43 4.16
6589 6826 3.795688 TCTCTTGCATTCCTTGGAACT 57.204 42.857 4.00 0.00 31.69 3.01
6845 7095 1.806568 GAGAGAGACTCTGGTGCGG 59.193 63.158 10.44 0.00 41.35 5.69
6873 7123 2.158682 AGGTGCATGTGTGTTTACCTGA 60.159 45.455 0.00 0.00 36.02 3.86
7045 7295 3.634568 GTCGAAGATGATGACGAGGAT 57.365 47.619 0.00 0.00 40.67 3.24
7363 7628 4.809673 TGTACTCATATTATGGCAGCGAG 58.190 43.478 3.89 0.00 0.00 5.03
7435 7700 3.374058 CCACGCCCAGATTACTTACTTTG 59.626 47.826 0.00 0.00 0.00 2.77
7503 7790 1.004044 AGTTCTGGTTGCCTCTGGATG 59.996 52.381 0.00 0.00 0.00 3.51
7566 7861 3.658757 ACCGTGTCAATTGATTTTGGG 57.341 42.857 12.12 11.12 0.00 4.12
7567 7862 2.288763 ACCGTGTCAATTGATTTTGGGC 60.289 45.455 12.12 0.00 0.00 5.36
7568 7863 2.288702 CCGTGTCAATTGATTTTGGGCA 60.289 45.455 12.12 0.00 0.00 5.36
7569 7864 3.388308 CGTGTCAATTGATTTTGGGCAA 58.612 40.909 12.12 0.00 0.00 4.52
7570 7865 3.429543 CGTGTCAATTGATTTTGGGCAAG 59.570 43.478 12.12 1.73 0.00 4.01
7571 7866 3.747529 GTGTCAATTGATTTTGGGCAAGG 59.252 43.478 12.12 0.00 0.00 3.61
7582 7877 1.570803 TGGGCAAGGCAATGCTATTT 58.429 45.000 4.82 0.00 45.68 1.40
7631 7926 4.566545 AGCGAACATGACAATTTTCACA 57.433 36.364 0.00 0.00 0.00 3.58
7635 7930 5.331756 GCGAACATGACAATTTTCACAACAG 60.332 40.000 0.00 0.00 0.00 3.16
7641 7936 7.864379 ACATGACAATTTTCACAACAGATCTTC 59.136 33.333 0.00 0.00 0.00 2.87
7737 8033 1.439353 AATTGCCGTGCCTCATAGCG 61.439 55.000 0.00 0.00 34.65 4.26
7755 8051 0.719465 CGAAGCGTTCGCTGGTTATT 59.281 50.000 20.05 3.52 46.97 1.40
7759 8056 1.427819 CGTTCGCTGGTTATTGGGC 59.572 57.895 0.00 0.00 0.00 5.36
7772 8069 2.495155 ATTGGGCCCTTGATTTTTGC 57.505 45.000 25.70 0.00 0.00 3.68
7776 8073 0.316841 GGCCCTTGATTTTTGCGTGA 59.683 50.000 0.00 0.00 0.00 4.35
7803 8100 2.109799 CGCAGCCCTATGGTGAGG 59.890 66.667 0.00 0.00 45.48 3.86
7804 8101 2.203266 GCAGCCCTATGGTGAGGC 60.203 66.667 0.00 0.00 45.48 4.70
7807 8104 3.324713 GCCCTATGGTGAGGCTGT 58.675 61.111 0.00 0.00 43.62 4.40
7808 8105 1.153086 GCCCTATGGTGAGGCTGTG 60.153 63.158 0.00 0.00 43.62 3.66
7809 8106 1.528824 CCCTATGGTGAGGCTGTGG 59.471 63.158 0.00 0.00 35.00 4.17
7810 8107 1.274703 CCCTATGGTGAGGCTGTGGT 61.275 60.000 0.00 0.00 35.00 4.16
7811 8108 0.107508 CCTATGGTGAGGCTGTGGTG 60.108 60.000 0.00 0.00 0.00 4.17
7812 8109 0.904649 CTATGGTGAGGCTGTGGTGA 59.095 55.000 0.00 0.00 0.00 4.02
7813 8110 0.904649 TATGGTGAGGCTGTGGTGAG 59.095 55.000 0.00 0.00 0.00 3.51
7814 8111 1.130054 ATGGTGAGGCTGTGGTGAGT 61.130 55.000 0.00 0.00 0.00 3.41
7815 8112 1.302033 GGTGAGGCTGTGGTGAGTG 60.302 63.158 0.00 0.00 0.00 3.51
7816 8113 1.963338 GTGAGGCTGTGGTGAGTGC 60.963 63.158 0.00 0.00 0.00 4.40
7817 8114 2.427320 GAGGCTGTGGTGAGTGCA 59.573 61.111 0.00 0.00 0.00 4.57
7818 8115 1.227943 GAGGCTGTGGTGAGTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
7819 8116 1.510480 GAGGCTGTGGTGAGTGCAAC 61.510 60.000 0.00 0.00 0.00 4.17
7820 8117 1.823470 GGCTGTGGTGAGTGCAACA 60.823 57.895 0.00 0.00 41.43 3.33
7824 8121 3.268603 TGGTGAGTGCAACACGCG 61.269 61.111 3.53 3.53 46.97 6.01
7825 8122 4.012895 GGTGAGTGCAACACGCGG 62.013 66.667 12.47 1.27 46.97 6.46
7826 8123 4.012895 GTGAGTGCAACACGCGGG 62.013 66.667 6.92 6.92 46.97 6.13
7827 8124 4.228567 TGAGTGCAACACGCGGGA 62.229 61.111 19.19 0.00 46.97 5.14
7828 8125 3.414700 GAGTGCAACACGCGGGAG 61.415 66.667 19.19 8.56 46.97 4.30
7829 8126 4.988598 AGTGCAACACGCGGGAGG 62.989 66.667 19.19 7.67 46.97 4.30
7848 8145 4.329545 GGTGCCCGTCAGCAGGAA 62.330 66.667 0.00 0.00 45.14 3.36
7849 8146 3.050275 GTGCCCGTCAGCAGGAAC 61.050 66.667 0.00 0.00 45.14 3.62
7850 8147 3.555324 TGCCCGTCAGCAGGAACA 61.555 61.111 0.00 0.00 38.00 3.18
7851 8148 3.050275 GCCCGTCAGCAGGAACAC 61.050 66.667 0.00 0.00 0.00 3.32
7852 8149 2.425592 CCCGTCAGCAGGAACACA 59.574 61.111 0.00 0.00 0.00 3.72
7853 8150 1.669115 CCCGTCAGCAGGAACACAG 60.669 63.158 0.00 0.00 0.00 3.66
7867 8164 1.077212 CACAGGGGGAGGCTTGATG 60.077 63.158 0.00 0.00 0.00 3.07
7868 8165 2.311854 ACAGGGGGAGGCTTGATGG 61.312 63.158 0.00 0.00 0.00 3.51
7869 8166 2.697644 AGGGGGAGGCTTGATGGG 60.698 66.667 0.00 0.00 0.00 4.00
7870 8167 3.825623 GGGGGAGGCTTGATGGGG 61.826 72.222 0.00 0.00 0.00 4.96
7871 8168 3.825623 GGGGAGGCTTGATGGGGG 61.826 72.222 0.00 0.00 0.00 5.40
7872 8169 2.696125 GGGAGGCTTGATGGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
7873 8170 2.316586 GGGAGGCTTGATGGGGGAA 61.317 63.158 0.00 0.00 0.00 3.97
7874 8171 1.697297 GGAGGCTTGATGGGGGAAA 59.303 57.895 0.00 0.00 0.00 3.13
7875 8172 0.041090 GGAGGCTTGATGGGGGAAAA 59.959 55.000 0.00 0.00 0.00 2.29
7877 8174 2.091333 GGAGGCTTGATGGGGGAAAATA 60.091 50.000 0.00 0.00 0.00 1.40
7878 8175 3.438520 GGAGGCTTGATGGGGGAAAATAT 60.439 47.826 0.00 0.00 0.00 1.28
7879 8176 3.829026 GAGGCTTGATGGGGGAAAATATC 59.171 47.826 0.00 0.00 0.00 1.63
7880 8177 3.468625 AGGCTTGATGGGGGAAAATATCT 59.531 43.478 0.00 0.00 0.00 1.98
7881 8178 3.575687 GGCTTGATGGGGGAAAATATCTG 59.424 47.826 0.00 0.00 0.00 2.90
7882 8179 3.575687 GCTTGATGGGGGAAAATATCTGG 59.424 47.826 0.00 0.00 0.00 3.86
7883 8180 4.808042 CTTGATGGGGGAAAATATCTGGT 58.192 43.478 0.00 0.00 0.00 4.00
7884 8181 4.183223 TGATGGGGGAAAATATCTGGTG 57.817 45.455 0.00 0.00 0.00 4.17
7885 8182 2.452600 TGGGGGAAAATATCTGGTGC 57.547 50.000 0.00 0.00 0.00 5.01
7886 8183 1.643286 TGGGGGAAAATATCTGGTGCA 59.357 47.619 0.00 0.00 0.00 4.57
7887 8184 2.247111 TGGGGGAAAATATCTGGTGCAT 59.753 45.455 0.00 0.00 0.00 3.96
7888 8185 2.893489 GGGGGAAAATATCTGGTGCATC 59.107 50.000 0.00 0.00 0.00 3.91
7889 8186 2.554032 GGGGAAAATATCTGGTGCATCG 59.446 50.000 0.00 0.00 0.00 3.84
7890 8187 3.476552 GGGAAAATATCTGGTGCATCGA 58.523 45.455 0.00 0.00 0.00 3.59
7891 8188 3.882888 GGGAAAATATCTGGTGCATCGAA 59.117 43.478 0.00 0.00 0.00 3.71
7892 8189 4.023707 GGGAAAATATCTGGTGCATCGAAG 60.024 45.833 0.00 0.00 0.00 3.79
7893 8190 4.576463 GGAAAATATCTGGTGCATCGAAGT 59.424 41.667 0.00 0.00 0.00 3.01
7894 8191 5.066505 GGAAAATATCTGGTGCATCGAAGTT 59.933 40.000 0.00 0.00 0.00 2.66
7895 8192 6.404734 GGAAAATATCTGGTGCATCGAAGTTT 60.405 38.462 0.00 0.00 0.00 2.66
7896 8193 5.490139 AATATCTGGTGCATCGAAGTTTG 57.510 39.130 0.00 0.00 0.00 2.93
7897 8194 2.254546 TCTGGTGCATCGAAGTTTGT 57.745 45.000 0.00 0.00 0.00 2.83
7898 8195 1.872952 TCTGGTGCATCGAAGTTTGTG 59.127 47.619 0.00 0.00 0.00 3.33
7899 8196 0.950836 TGGTGCATCGAAGTTTGTGG 59.049 50.000 0.00 0.00 0.00 4.17
7900 8197 0.951558 GGTGCATCGAAGTTTGTGGT 59.048 50.000 0.00 0.00 0.00 4.16
7901 8198 1.334960 GGTGCATCGAAGTTTGTGGTG 60.335 52.381 0.00 0.00 0.00 4.17
7902 8199 0.310543 TGCATCGAAGTTTGTGGTGC 59.689 50.000 0.00 9.48 0.00 5.01
7903 8200 0.593128 GCATCGAAGTTTGTGGTGCT 59.407 50.000 0.00 0.00 0.00 4.40
7904 8201 1.804151 GCATCGAAGTTTGTGGTGCTA 59.196 47.619 0.00 0.00 0.00 3.49
7905 8202 2.412847 GCATCGAAGTTTGTGGTGCTAC 60.413 50.000 0.00 0.00 0.00 3.58
7906 8203 2.902705 TCGAAGTTTGTGGTGCTACT 57.097 45.000 0.00 0.00 0.00 2.57
7907 8204 2.479837 TCGAAGTTTGTGGTGCTACTG 58.520 47.619 0.00 0.00 0.00 2.74
7908 8205 1.531149 CGAAGTTTGTGGTGCTACTGG 59.469 52.381 0.00 0.00 0.00 4.00
7909 8206 2.572290 GAAGTTTGTGGTGCTACTGGT 58.428 47.619 0.00 0.00 0.00 4.00
7910 8207 1.967319 AGTTTGTGGTGCTACTGGTG 58.033 50.000 0.00 0.00 0.00 4.17
7911 8208 0.310854 GTTTGTGGTGCTACTGGTGC 59.689 55.000 0.00 0.00 0.00 5.01
7912 8209 0.106967 TTTGTGGTGCTACTGGTGCA 60.107 50.000 0.00 0.00 38.19 4.57
7913 8210 0.110295 TTGTGGTGCTACTGGTGCAT 59.890 50.000 0.00 0.00 42.69 3.96
7914 8211 0.321564 TGTGGTGCTACTGGTGCATC 60.322 55.000 0.00 0.00 42.69 3.91
7915 8212 1.079197 TGGTGCTACTGGTGCATCG 60.079 57.895 0.00 0.00 43.84 3.84
7916 8213 1.218047 GGTGCTACTGGTGCATCGA 59.782 57.895 0.00 0.00 42.69 3.59
7917 8214 0.391130 GGTGCTACTGGTGCATCGAA 60.391 55.000 0.00 0.00 42.69 3.71
7918 8215 0.721718 GTGCTACTGGTGCATCGAAC 59.278 55.000 0.00 0.00 42.69 3.95
7919 8216 0.608130 TGCTACTGGTGCATCGAACT 59.392 50.000 0.00 0.00 35.31 3.01
7920 8217 1.281899 GCTACTGGTGCATCGAACTC 58.718 55.000 0.00 0.00 0.00 3.01
7921 8218 1.404181 GCTACTGGTGCATCGAACTCA 60.404 52.381 0.00 0.00 0.00 3.41
7922 8219 2.739932 GCTACTGGTGCATCGAACTCAT 60.740 50.000 0.00 0.00 0.00 2.90
7923 8220 3.490933 GCTACTGGTGCATCGAACTCATA 60.491 47.826 0.00 0.00 0.00 2.15
7924 8221 3.827008 ACTGGTGCATCGAACTCATAT 57.173 42.857 0.00 0.00 0.00 1.78
7925 8222 4.142609 ACTGGTGCATCGAACTCATATT 57.857 40.909 0.00 0.00 0.00 1.28
7926 8223 3.873361 ACTGGTGCATCGAACTCATATTG 59.127 43.478 0.00 0.00 0.00 1.90
7927 8224 3.872696 TGGTGCATCGAACTCATATTGT 58.127 40.909 0.00 0.00 0.00 2.71
7928 8225 4.260985 TGGTGCATCGAACTCATATTGTT 58.739 39.130 0.00 0.00 0.00 2.83
7929 8226 4.094739 TGGTGCATCGAACTCATATTGTTG 59.905 41.667 0.00 0.00 0.00 3.33
7930 8227 4.094887 GGTGCATCGAACTCATATTGTTGT 59.905 41.667 0.00 0.00 0.00 3.32
7931 8228 5.391950 GGTGCATCGAACTCATATTGTTGTT 60.392 40.000 0.00 0.00 0.00 2.83
7932 8229 6.086222 GTGCATCGAACTCATATTGTTGTTT 58.914 36.000 0.00 0.00 0.00 2.83
7933 8230 7.240674 GTGCATCGAACTCATATTGTTGTTTA 58.759 34.615 0.00 0.00 0.00 2.01
7934 8231 7.748683 GTGCATCGAACTCATATTGTTGTTTAA 59.251 33.333 0.00 0.00 0.00 1.52
7935 8232 8.293157 TGCATCGAACTCATATTGTTGTTTAAA 58.707 29.630 0.00 0.00 0.00 1.52
7936 8233 9.123709 GCATCGAACTCATATTGTTGTTTAAAA 57.876 29.630 0.00 0.00 0.00 1.52
7974 8271 8.775220 TGTTGAAATAAATTAACACACTCACG 57.225 30.769 0.00 0.00 0.00 4.35
7975 8272 7.377397 TGTTGAAATAAATTAACACACTCACGC 59.623 33.333 0.00 0.00 0.00 5.34
7976 8273 6.960468 TGAAATAAATTAACACACTCACGCA 58.040 32.000 0.00 0.00 0.00 5.24
7977 8274 7.418408 TGAAATAAATTAACACACTCACGCAA 58.582 30.769 0.00 0.00 0.00 4.85
7978 8275 7.377397 TGAAATAAATTAACACACTCACGCAAC 59.623 33.333 0.00 0.00 0.00 4.17
7979 8276 4.624336 AAATTAACACACTCACGCAACA 57.376 36.364 0.00 0.00 0.00 3.33
7980 8277 4.829064 AATTAACACACTCACGCAACAT 57.171 36.364 0.00 0.00 0.00 2.71
7981 8278 4.829064 ATTAACACACTCACGCAACATT 57.171 36.364 0.00 0.00 0.00 2.71
7982 8279 5.933187 ATTAACACACTCACGCAACATTA 57.067 34.783 0.00 0.00 0.00 1.90
7983 8280 5.736486 TTAACACACTCACGCAACATTAA 57.264 34.783 0.00 0.00 0.00 1.40
7984 8281 4.829064 AACACACTCACGCAACATTAAT 57.171 36.364 0.00 0.00 0.00 1.40
7985 8282 4.145876 ACACACTCACGCAACATTAATG 57.854 40.909 14.01 14.01 0.00 1.90
7986 8283 3.563808 ACACACTCACGCAACATTAATGT 59.436 39.130 15.47 15.47 44.20 2.71
7987 8284 4.752604 ACACACTCACGCAACATTAATGTA 59.247 37.500 21.07 4.05 40.80 2.29
7988 8285 5.107104 ACACACTCACGCAACATTAATGTAG 60.107 40.000 21.07 15.25 40.80 2.74
7989 8286 4.391830 ACACTCACGCAACATTAATGTAGG 59.608 41.667 21.07 16.57 40.80 3.18
7990 8287 4.391830 CACTCACGCAACATTAATGTAGGT 59.608 41.667 21.07 15.38 40.80 3.08
7991 8288 5.001232 ACTCACGCAACATTAATGTAGGTT 58.999 37.500 21.07 3.08 40.80 3.50
7992 8289 5.106712 ACTCACGCAACATTAATGTAGGTTG 60.107 40.000 21.07 15.90 40.80 3.77
7997 8294 5.384063 CAACATTAATGTAGGTTGCCACA 57.616 39.130 21.07 0.00 40.80 4.17
7998 8295 5.777802 CAACATTAATGTAGGTTGCCACAA 58.222 37.500 21.07 0.00 40.80 3.33
7999 8296 6.219473 CAACATTAATGTAGGTTGCCACAAA 58.781 36.000 21.07 0.00 40.80 2.83
8000 8297 6.412362 ACATTAATGTAGGTTGCCACAAAA 57.588 33.333 19.51 0.00 39.68 2.44
8001 8298 7.003402 ACATTAATGTAGGTTGCCACAAAAT 57.997 32.000 19.51 0.00 39.68 1.82
8002 8299 7.449247 ACATTAATGTAGGTTGCCACAAAATT 58.551 30.769 19.51 0.00 39.68 1.82
8003 8300 7.936301 ACATTAATGTAGGTTGCCACAAAATTT 59.064 29.630 19.51 0.00 39.68 1.82
8004 8301 8.782144 CATTAATGTAGGTTGCCACAAAATTTT 58.218 29.630 7.32 0.00 0.00 1.82
8006 8303 9.832445 TTAATGTAGGTTGCCACAAAATTTTAA 57.168 25.926 2.44 0.00 0.00 1.52
8007 8304 8.738645 AATGTAGGTTGCCACAAAATTTTAAA 57.261 26.923 2.44 0.00 0.00 1.52
8008 8305 8.916628 ATGTAGGTTGCCACAAAATTTTAAAT 57.083 26.923 2.44 0.00 0.00 1.40
8009 8306 8.371770 TGTAGGTTGCCACAAAATTTTAAATC 57.628 30.769 2.44 0.00 0.00 2.17
8010 8307 7.987458 TGTAGGTTGCCACAAAATTTTAAATCA 59.013 29.630 2.44 0.00 0.00 2.57
8011 8308 7.872113 AGGTTGCCACAAAATTTTAAATCAA 57.128 28.000 2.44 3.87 0.00 2.57
8012 8309 8.286191 AGGTTGCCACAAAATTTTAAATCAAA 57.714 26.923 2.44 0.00 0.00 2.69
8013 8310 8.743714 AGGTTGCCACAAAATTTTAAATCAAAA 58.256 25.926 2.44 0.00 40.34 2.44
8014 8311 9.526713 GGTTGCCACAAAATTTTAAATCAAAAT 57.473 25.926 2.44 0.00 46.56 1.82
8148 8445 5.816449 ATCATACATTGATGTTGCGTCAA 57.184 34.783 1.46 6.28 43.60 3.18
8149 8446 4.968626 TCATACATTGATGTTGCGTCAAC 58.031 39.130 13.54 13.54 41.32 3.18
8150 8447 2.314561 ACATTGATGTTGCGTCAACG 57.685 45.000 14.86 0.00 46.13 4.10
8151 8448 1.601903 ACATTGATGTTGCGTCAACGT 59.398 42.857 14.50 14.50 46.13 3.99
8152 8449 1.971284 CATTGATGTTGCGTCAACGTG 59.029 47.619 18.01 8.69 46.13 4.49
8153 8450 0.316607 TTGATGTTGCGTCAACGTGC 60.317 50.000 18.01 11.78 46.13 5.34
8154 8451 1.157257 TGATGTTGCGTCAACGTGCT 61.157 50.000 18.01 5.02 46.13 4.40
8155 8452 0.787787 GATGTTGCGTCAACGTGCTA 59.212 50.000 18.01 3.20 46.13 3.49
8156 8453 1.193650 GATGTTGCGTCAACGTGCTAA 59.806 47.619 18.01 2.63 46.13 3.09
8157 8454 1.007580 TGTTGCGTCAACGTGCTAAA 58.992 45.000 14.86 0.00 46.13 1.85
8158 8455 1.600013 TGTTGCGTCAACGTGCTAAAT 59.400 42.857 14.86 0.00 46.13 1.40
8159 8456 2.032302 TGTTGCGTCAACGTGCTAAATT 59.968 40.909 14.86 0.00 46.13 1.82
8160 8457 3.040099 GTTGCGTCAACGTGCTAAATTT 58.960 40.909 4.29 0.00 42.22 1.82
8161 8458 3.341857 TGCGTCAACGTGCTAAATTTT 57.658 38.095 4.29 0.00 42.22 1.82
8162 8459 3.696898 TGCGTCAACGTGCTAAATTTTT 58.303 36.364 4.29 0.00 42.22 1.94
8201 8498 9.685828 TTTAAAATATTTTATAGCATCCGGTGC 57.314 29.630 18.87 17.87 41.72 5.01
8202 8499 8.851145 TTAAAATATTTTATAGCATCCGGTGCA 58.149 29.630 24.48 14.24 42.71 4.57
8211 8508 1.864565 CATCCGGTGCATCGATAACA 58.135 50.000 23.56 0.00 0.00 2.41
8212 8509 1.526887 CATCCGGTGCATCGATAACAC 59.473 52.381 23.56 18.03 0.00 3.32
8218 8515 3.389687 GTGCATCGATAACACCACAAG 57.610 47.619 16.25 0.00 0.00 3.16
8219 8516 1.737236 TGCATCGATAACACCACAAGC 59.263 47.619 0.00 0.00 0.00 4.01
8220 8517 1.267532 GCATCGATAACACCACAAGCG 60.268 52.381 0.00 0.00 0.00 4.68
8221 8518 1.999735 CATCGATAACACCACAAGCGT 59.000 47.619 0.00 0.00 0.00 5.07
8222 8519 1.424403 TCGATAACACCACAAGCGTG 58.576 50.000 0.00 0.00 43.21 5.34
8230 8527 3.964875 CACAAGCGTGGGTGCACC 61.965 66.667 28.57 28.57 39.64 5.01
8235 8532 4.460683 GCGTGGGTGCACCGGATA 62.461 66.667 29.08 12.81 44.64 2.59
8236 8533 2.510691 CGTGGGTGCACCGGATAC 60.511 66.667 29.08 21.76 44.64 2.24
8237 8534 2.666207 GTGGGTGCACCGGATACA 59.334 61.111 29.08 18.06 44.64 2.29
8238 8535 1.223487 GTGGGTGCACCGGATACAT 59.777 57.895 29.08 0.00 44.64 2.29
8239 8536 0.393808 GTGGGTGCACCGGATACATT 60.394 55.000 29.08 0.00 44.64 2.71
8240 8537 0.107410 TGGGTGCACCGGATACATTC 60.107 55.000 29.08 12.57 44.64 2.67
8241 8538 0.818040 GGGTGCACCGGATACATTCC 60.818 60.000 29.08 7.74 41.59 3.01
8242 8539 0.818040 GGTGCACCGGATACATTCCC 60.818 60.000 22.49 0.00 42.06 3.97
8243 8540 0.107410 GTGCACCGGATACATTCCCA 60.107 55.000 9.46 0.00 42.06 4.37
8266 8563 4.052518 ATGGGTGCAGGGTCTGGC 62.053 66.667 0.00 0.00 31.21 4.85
8269 8566 3.958860 GGTGCAGGGTCTGGCAGT 61.959 66.667 15.27 0.00 41.35 4.40
8287 8593 2.094494 CAGTGGTGCACTAGTCAGTAGG 60.094 54.545 17.98 0.00 43.43 3.18
8290 8596 1.134965 GGTGCACTAGTCAGTAGGCAG 60.135 57.143 17.98 0.00 36.31 4.85
8299 8605 3.292460 AGTCAGTAGGCAGGTCATCTAC 58.708 50.000 0.00 0.00 35.03 2.59
8306 8612 2.084546 GGCAGGTCATCTACAACCAAC 58.915 52.381 0.00 0.00 38.06 3.77
8315 8621 5.007682 TCATCTACAACCAACCTAAAAGCC 58.992 41.667 0.00 0.00 0.00 4.35
8316 8622 4.440826 TCTACAACCAACCTAAAAGCCA 57.559 40.909 0.00 0.00 0.00 4.75
8362 8668 8.691661 AAATATTGACTACTTTTGTCACTGGT 57.308 30.769 0.00 0.00 43.13 4.00
8363 8669 8.691661 AATATTGACTACTTTTGTCACTGGTT 57.308 30.769 0.00 0.00 43.13 3.67
8364 8670 5.811399 TTGACTACTTTTGTCACTGGTTG 57.189 39.130 0.00 0.00 43.13 3.77
8365 8671 4.196193 TGACTACTTTTGTCACTGGTTGG 58.804 43.478 0.00 0.00 39.23 3.77
8366 8672 4.196971 GACTACTTTTGTCACTGGTTGGT 58.803 43.478 0.00 0.00 34.80 3.67
8369 8675 6.181908 ACTACTTTTGTCACTGGTTGGTTAA 58.818 36.000 0.00 0.00 0.00 2.01
8370 8676 5.319140 ACTTTTGTCACTGGTTGGTTAAC 57.681 39.130 0.00 0.00 36.04 2.01
8429 8735 4.030913 AGCTGGCTACTAATCTACAACCA 58.969 43.478 0.00 0.00 0.00 3.67
8498 8807 7.735326 TTCTTAAAGCCTACTTAGATCACCT 57.265 36.000 0.00 0.00 34.05 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.152645 AGGCACGAGTTTATAAGGTATATGTG 58.847 38.462 0.00 0.00 0.00 3.21
21 22 0.539986 GGGGTTAGACAATCGAGGCA 59.460 55.000 0.00 0.00 0.00 4.75
29 30 4.288366 TGATGACTTCATGGGGTTAGACAA 59.712 41.667 0.00 0.00 36.57 3.18
42 43 4.022329 TCGAGCACTTTAGTGATGACTTCA 60.022 41.667 13.83 0.00 45.57 3.02
43 44 4.486090 TCGAGCACTTTAGTGATGACTTC 58.514 43.478 13.83 0.00 45.57 3.01
64 65 9.098355 TCAATACACATTTCTAAGCATACACTC 57.902 33.333 0.00 0.00 0.00 3.51
72 73 6.759497 AACCCTCAATACACATTTCTAAGC 57.241 37.500 0.00 0.00 0.00 3.09
80 81 5.880901 AGAGTTCAAACCCTCAATACACAT 58.119 37.500 0.00 0.00 0.00 3.21
114 115 1.136085 GTGTGTGTGTGTGTGTGTGAC 60.136 52.381 0.00 0.00 0.00 3.67
117 118 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
118 119 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
123 124 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
124 125 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
128 129 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
129 130 3.376540 GTTTGTTTGTGTGTGTGTGTGT 58.623 40.909 0.00 0.00 0.00 3.72
131 132 2.362397 TGGTTTGTTTGTGTGTGTGTGT 59.638 40.909 0.00 0.00 0.00 3.72
132 133 2.728839 GTGGTTTGTTTGTGTGTGTGTG 59.271 45.455 0.00 0.00 0.00 3.82
133 134 2.288518 GGTGGTTTGTTTGTGTGTGTGT 60.289 45.455 0.00 0.00 0.00 3.72
134 135 2.333014 GGTGGTTTGTTTGTGTGTGTG 58.667 47.619 0.00 0.00 0.00 3.82
135 136 1.273886 GGGTGGTTTGTTTGTGTGTGT 59.726 47.619 0.00 0.00 0.00 3.72
136 137 1.404851 GGGGTGGTTTGTTTGTGTGTG 60.405 52.381 0.00 0.00 0.00 3.82
137 138 0.899019 GGGGTGGTTTGTTTGTGTGT 59.101 50.000 0.00 0.00 0.00 3.72
138 139 0.898320 TGGGGTGGTTTGTTTGTGTG 59.102 50.000 0.00 0.00 0.00 3.82
139 140 1.872773 ATGGGGTGGTTTGTTTGTGT 58.127 45.000 0.00 0.00 0.00 3.72
140 141 2.998316 AATGGGGTGGTTTGTTTGTG 57.002 45.000 0.00 0.00 0.00 3.33
141 142 5.437191 TTAAAATGGGGTGGTTTGTTTGT 57.563 34.783 0.00 0.00 0.00 2.83
142 143 5.825151 ACATTAAAATGGGGTGGTTTGTTTG 59.175 36.000 7.56 0.00 40.70 2.93
143 144 6.007485 ACATTAAAATGGGGTGGTTTGTTT 57.993 33.333 7.56 0.00 40.70 2.83
144 145 5.638530 ACATTAAAATGGGGTGGTTTGTT 57.361 34.783 7.56 0.00 40.70 2.83
145 146 5.372373 CAACATTAAAATGGGGTGGTTTGT 58.628 37.500 7.56 0.00 40.70 2.83
146 147 4.759183 CCAACATTAAAATGGGGTGGTTTG 59.241 41.667 7.56 1.55 40.70 2.93
153 154 5.674052 TCACATCCAACATTAAAATGGGG 57.326 39.130 7.56 8.11 40.70 4.96
169 170 2.480037 TGACGCTCACAAACATCACATC 59.520 45.455 0.00 0.00 0.00 3.06
187 188 1.117150 TACTGCGGGGTAGGATTGAC 58.883 55.000 0.00 0.00 0.00 3.18
188 189 1.868713 TTACTGCGGGGTAGGATTGA 58.131 50.000 0.00 0.00 0.00 2.57
193 194 0.325602 TGGTTTTACTGCGGGGTAGG 59.674 55.000 0.00 0.00 0.00 3.18
197 198 2.116827 TATGTGGTTTTACTGCGGGG 57.883 50.000 0.00 0.00 0.00 5.73
228 229 4.904241 AGTCTTCATCCTCACCTTCAAAG 58.096 43.478 0.00 0.00 0.00 2.77
256 257 7.943079 TCAGTCATTTGAAACATATGACCAT 57.057 32.000 21.80 9.73 46.35 3.55
335 336 5.432060 ACCTAGAGTTTAATATGGCACCCTT 59.568 40.000 0.00 0.00 0.00 3.95
337 338 5.306114 ACCTAGAGTTTAATATGGCACCC 57.694 43.478 0.00 0.00 0.00 4.61
366 370 8.511321 TCACAATTTCTATTGCGTCTTTGTATT 58.489 29.630 0.00 0.00 44.05 1.89
397 401 5.650543 GTTCATGTTGTCTTTTTGAGGTGT 58.349 37.500 0.00 0.00 0.00 4.16
472 533 8.909671 CAATTTCAAGAAAAACTAGTGCATCTC 58.090 33.333 0.00 0.00 33.56 2.75
666 733 1.270550 GAGCACCAAACCTTGACCATG 59.729 52.381 0.00 0.00 0.00 3.66
709 776 6.716284 TGGAACCAGTTTTGAAAGGAAAAAT 58.284 32.000 0.00 0.00 0.00 1.82
841 914 0.107017 ATGCCCCTCTCATTTCGTGG 60.107 55.000 0.00 0.00 0.00 4.94
845 918 1.303309 CACGATGCCCCTCTCATTTC 58.697 55.000 0.00 0.00 0.00 2.17
851 924 1.274703 AATGACCACGATGCCCCTCT 61.275 55.000 0.00 0.00 0.00 3.69
852 925 0.394352 AAATGACCACGATGCCCCTC 60.394 55.000 0.00 0.00 0.00 4.30
918 992 0.668535 GATGTAAATTCGCAGGGGGC 59.331 55.000 0.00 0.00 39.90 5.80
966 1045 4.021016 CGGGGAGAGAGAGAAAGAGAAAAA 60.021 45.833 0.00 0.00 0.00 1.94
1202 1284 1.666872 AAGAACCCCGCGAGAAACG 60.667 57.895 8.23 0.00 45.66 3.60
1209 1291 3.638592 AATCCCCAAGAACCCCGCG 62.639 63.158 0.00 0.00 0.00 6.46
1211 1293 1.029947 CGAAATCCCCAAGAACCCCG 61.030 60.000 0.00 0.00 0.00 5.73
1218 1300 1.818674 CAAACCCTCGAAATCCCCAAG 59.181 52.381 0.00 0.00 0.00 3.61
1219 1301 1.425831 TCAAACCCTCGAAATCCCCAA 59.574 47.619 0.00 0.00 0.00 4.12
1221 1303 2.209690 TTCAAACCCTCGAAATCCCC 57.790 50.000 0.00 0.00 0.00 4.81
1268 1350 1.748879 GCATTAGCAAGCACCGGGA 60.749 57.895 6.32 0.00 41.58 5.14
1269 1351 2.800736 GCATTAGCAAGCACCGGG 59.199 61.111 6.32 0.00 41.58 5.73
1270 1352 2.404789 CGCATTAGCAAGCACCGG 59.595 61.111 0.00 0.00 42.27 5.28
1272 1354 2.774799 CCCCGCATTAGCAAGCACC 61.775 63.158 0.00 0.00 42.27 5.01
1273 1355 2.800736 CCCCGCATTAGCAAGCAC 59.199 61.111 0.00 0.00 42.27 4.40
1274 1356 3.140141 GCCCCGCATTAGCAAGCA 61.140 61.111 0.00 0.00 42.27 3.91
1350 1432 3.361977 CACCAAGGAAACCCGGCG 61.362 66.667 0.00 0.00 0.00 6.46
1648 1730 3.743017 GGGGGCAGAGATTGGGCA 61.743 66.667 0.00 0.00 0.00 5.36
1675 1757 5.130292 AGATTCAAAAGTTGCATGGAGTG 57.870 39.130 0.00 0.00 0.00 3.51
1676 1758 5.069516 ACAAGATTCAAAAGTTGCATGGAGT 59.930 36.000 0.00 0.00 0.00 3.85
1677 1759 5.535333 ACAAGATTCAAAAGTTGCATGGAG 58.465 37.500 0.00 0.00 0.00 3.86
1752 1842 7.630082 AGTTGGCCTTACTTGTGAATCTTATA 58.370 34.615 3.32 0.00 0.00 0.98
1753 1843 6.485171 AGTTGGCCTTACTTGTGAATCTTAT 58.515 36.000 3.32 0.00 0.00 1.73
1754 1844 5.876357 AGTTGGCCTTACTTGTGAATCTTA 58.124 37.500 3.32 0.00 0.00 2.10
1805 1895 4.844998 ATCTGACGACATGTGATAGAGG 57.155 45.455 1.15 0.00 0.00 3.69
1808 1904 6.892310 TCAAAATCTGACGACATGTGATAG 57.108 37.500 1.15 0.00 0.00 2.08
1939 2036 4.650972 ACCAGCAAAGGGTATAGTTTCA 57.349 40.909 0.00 0.00 36.72 2.69
1946 2043 5.887754 TCTTTAAGAACCAGCAAAGGGTAT 58.112 37.500 0.00 0.00 37.77 2.73
2111 2218 8.864087 TCATAATGATGACTAGCATTACTGAGT 58.136 33.333 0.00 0.00 44.97 3.41
2160 2335 0.244994 CACTAGCTATAGCCCGCAGG 59.755 60.000 21.17 7.68 43.38 4.85
2164 2339 4.051922 CAGAAAACACTAGCTATAGCCCG 58.948 47.826 21.17 14.31 43.38 6.13
2246 2421 7.725251 AGTGAGAAGGAAAATGCAAAAATACA 58.275 30.769 0.00 0.00 0.00 2.29
2532 2707 2.260869 TGCAGCTTGTTCCCGCTTC 61.261 57.895 0.00 0.00 33.45 3.86
2826 3001 7.415653 CCAACTCATTTTGGCTATTAGAGGTTC 60.416 40.741 0.00 0.00 39.78 3.62
2960 3135 9.575783 GACAAACAAAAAGTCATAAGGTAAACA 57.424 29.630 0.00 0.00 32.68 2.83
3331 3506 4.686191 TCCTCCTGTACGTAACCAAAAA 57.314 40.909 0.00 0.00 0.00 1.94
3592 3767 7.899178 TCTCTTGTGAGCGTAATTCATTTAA 57.101 32.000 0.00 0.00 40.03 1.52
3627 3802 2.431954 AAGAATGCAGGACCCATCAG 57.568 50.000 0.00 0.00 0.00 2.90
3810 3987 0.792640 GCAGACTGTTCATCGGTGTG 59.207 55.000 3.99 0.00 45.74 3.82
3811 3988 0.681733 AGCAGACTGTTCATCGGTGT 59.318 50.000 3.99 0.00 35.55 4.16
3812 3989 1.067283 AGAGCAGACTGTTCATCGGTG 60.067 52.381 19.88 0.00 35.55 4.94
3867 4049 8.147058 TGACCAAATAAATGTAACAGCAACATT 58.853 29.630 0.00 0.00 46.77 2.71
4121 4357 6.434652 CAGAATAACATATACTCCCTCCGTCT 59.565 42.308 0.00 0.00 0.00 4.18
4125 4361 9.091220 AGTTACAGAATAACATATACTCCCTCC 57.909 37.037 0.10 0.00 0.00 4.30
4209 4445 3.253230 GCCAATTTACACATGCAAGGTC 58.747 45.455 0.00 0.00 0.00 3.85
4237 4474 3.110705 AGATGAACACAGGATAGTGGCT 58.889 45.455 0.00 0.00 43.72 4.75
4324 4561 3.391965 TGCTTGGAACATGAACATTTGC 58.608 40.909 0.00 1.85 39.30 3.68
4505 4742 4.059773 AGATTTCCTCTCACTCTCCAGT 57.940 45.455 0.00 0.00 0.00 4.00
4526 4763 9.087871 TCCCTATGTTTCATTCTTTCATCAAAA 57.912 29.630 0.00 0.00 0.00 2.44
4537 4774 6.705863 AATCAGCTTCCCTATGTTTCATTC 57.294 37.500 0.00 0.00 0.00 2.67
4538 4775 6.127253 CCAAATCAGCTTCCCTATGTTTCATT 60.127 38.462 0.00 0.00 0.00 2.57
4679 4916 3.864789 TCCCACTTCTTCAGAGCTTTT 57.135 42.857 0.00 0.00 0.00 2.27
4949 5186 5.470098 CCTCAAATCTTCAGTTTCTTCCGAA 59.530 40.000 0.00 0.00 0.00 4.30
5108 5345 6.823286 TCCATTTCATCCTGTGTATCCTTA 57.177 37.500 0.00 0.00 0.00 2.69
5543 5780 2.010497 TCTCGACGATCCTTCAGACTG 58.990 52.381 0.00 0.00 0.00 3.51
5887 6124 3.068732 CGGTGATGCTTCCTCTAATCTCA 59.931 47.826 0.00 0.00 0.00 3.27
6470 6707 2.361610 CCTGGGGCTTGCGTTGAT 60.362 61.111 0.00 0.00 0.00 2.57
6840 7079 0.744414 ATGCACCTGACATACCGCAC 60.744 55.000 0.00 0.00 31.22 5.34
6845 7095 2.426522 ACACACATGCACCTGACATAC 58.573 47.619 0.00 0.00 0.00 2.39
6873 7123 6.717289 TGACATGGTTACCAGTTTATTAGCT 58.283 36.000 10.74 0.00 36.75 3.32
7034 7284 5.069501 TCATCATCATCATCCTCGTCATC 57.930 43.478 0.00 0.00 0.00 2.92
7035 7285 5.187186 TCATCATCATCATCATCCTCGTCAT 59.813 40.000 0.00 0.00 0.00 3.06
7036 7286 4.525487 TCATCATCATCATCATCCTCGTCA 59.475 41.667 0.00 0.00 0.00 4.35
7037 7287 5.069501 TCATCATCATCATCATCCTCGTC 57.930 43.478 0.00 0.00 0.00 4.20
7038 7288 5.678955 ATCATCATCATCATCATCCTCGT 57.321 39.130 0.00 0.00 0.00 4.18
7039 7289 6.106673 TGAATCATCATCATCATCATCCTCG 58.893 40.000 0.00 0.00 0.00 4.63
7040 7290 7.331791 TCTGAATCATCATCATCATCATCCTC 58.668 38.462 0.00 0.00 34.37 3.71
7041 7291 7.181125 TCTCTGAATCATCATCATCATCATCCT 59.819 37.037 0.00 0.00 34.37 3.24
7042 7292 7.331791 TCTCTGAATCATCATCATCATCATCC 58.668 38.462 0.00 0.00 34.37 3.51
7043 7293 7.494298 CCTCTCTGAATCATCATCATCATCATC 59.506 40.741 0.00 0.00 34.37 2.92
7044 7294 7.334858 CCTCTCTGAATCATCATCATCATCAT 58.665 38.462 0.00 0.00 34.37 2.45
7045 7295 6.702329 CCTCTCTGAATCATCATCATCATCA 58.298 40.000 0.00 0.00 34.37 3.07
7363 7628 0.889306 ACTCTCGACTGTTACAGGCC 59.111 55.000 17.21 7.09 35.82 5.19
7435 7700 4.051922 CACACTGTGTAGAGAAGGTGAAC 58.948 47.826 13.89 0.00 0.00 3.18
7523 7818 3.896648 AAAACATTCACACGCCTGTAG 57.103 42.857 0.00 0.00 0.00 2.74
7546 7841 2.288763 GCCCAAAATCAATTGACACGGT 60.289 45.455 11.07 0.00 31.84 4.83
7709 8005 0.179176 GCACGGCAATTGCGAACATA 60.179 50.000 23.48 0.00 43.26 2.29
7715 8011 1.713937 TATGAGGCACGGCAATTGCG 61.714 55.000 23.48 19.81 41.18 4.85
7748 8044 2.938428 AATCAAGGGCCCAATAACCA 57.062 45.000 27.56 0.00 0.00 3.67
7755 8051 1.118356 ACGCAAAAATCAAGGGCCCA 61.118 50.000 27.56 2.74 0.00 5.36
7759 8056 3.568538 CTCTTCACGCAAAAATCAAGGG 58.431 45.455 0.00 0.00 0.00 3.95
7772 8069 1.154525 CTGCGCTTTGCTCTTCACG 60.155 57.895 9.73 0.00 46.63 4.35
7776 8073 2.469465 TAGGGCTGCGCTTTGCTCTT 62.469 55.000 24.50 11.12 46.63 2.85
7797 8094 1.302033 CACTCACCACAGCCTCACC 60.302 63.158 0.00 0.00 0.00 4.02
7799 8096 1.981951 TTGCACTCACCACAGCCTCA 61.982 55.000 0.00 0.00 0.00 3.86
7802 8099 1.823470 TGTTGCACTCACCACAGCC 60.823 57.895 0.00 0.00 0.00 4.85
7803 8100 1.356624 GTGTTGCACTCACCACAGC 59.643 57.895 9.32 0.00 35.90 4.40
7804 8101 1.643292 CGTGTTGCACTCACCACAG 59.357 57.895 13.37 0.00 35.62 3.66
7805 8102 2.468670 GCGTGTTGCACTCACCACA 61.469 57.895 13.37 0.00 45.45 4.17
7806 8103 2.327940 GCGTGTTGCACTCACCAC 59.672 61.111 13.37 4.97 45.45 4.16
7807 8104 3.268603 CGCGTGTTGCACTCACCA 61.269 61.111 13.37 0.00 46.97 4.17
7808 8105 4.012895 CCGCGTGTTGCACTCACC 62.013 66.667 4.92 7.31 46.97 4.02
7809 8106 4.012895 CCCGCGTGTTGCACTCAC 62.013 66.667 4.92 10.18 46.97 3.51
7810 8107 4.228567 TCCCGCGTGTTGCACTCA 62.229 61.111 4.92 0.00 46.97 3.41
7811 8108 3.414700 CTCCCGCGTGTTGCACTC 61.415 66.667 4.92 0.00 46.97 3.51
7812 8109 4.988598 CCTCCCGCGTGTTGCACT 62.989 66.667 4.92 0.00 46.97 4.40
7832 8129 3.050275 GTTCCTGCTGACGGGCAC 61.050 66.667 0.00 0.00 42.73 5.01
7833 8130 3.555324 TGTTCCTGCTGACGGGCA 61.555 61.111 0.00 0.00 42.73 5.36
7834 8131 3.050275 GTGTTCCTGCTGACGGGC 61.050 66.667 0.00 0.00 42.73 6.13
7835 8132 1.669115 CTGTGTTCCTGCTGACGGG 60.669 63.158 0.00 0.00 44.63 5.28
7836 8133 1.669115 CCTGTGTTCCTGCTGACGG 60.669 63.158 0.00 0.00 0.00 4.79
7837 8134 1.669115 CCCTGTGTTCCTGCTGACG 60.669 63.158 0.00 0.00 0.00 4.35
7838 8135 1.302832 CCCCTGTGTTCCTGCTGAC 60.303 63.158 0.00 0.00 0.00 3.51
7839 8136 2.528818 CCCCCTGTGTTCCTGCTGA 61.529 63.158 0.00 0.00 0.00 4.26
7840 8137 2.034687 CCCCCTGTGTTCCTGCTG 59.965 66.667 0.00 0.00 0.00 4.41
7841 8138 2.121963 TCCCCCTGTGTTCCTGCT 60.122 61.111 0.00 0.00 0.00 4.24
7842 8139 2.352805 CTCCCCCTGTGTTCCTGC 59.647 66.667 0.00 0.00 0.00 4.85
7843 8140 3.081554 CCTCCCCCTGTGTTCCTG 58.918 66.667 0.00 0.00 0.00 3.86
7844 8141 2.936032 GCCTCCCCCTGTGTTCCT 60.936 66.667 0.00 0.00 0.00 3.36
7845 8142 2.539081 AAGCCTCCCCCTGTGTTCC 61.539 63.158 0.00 0.00 0.00 3.62
7846 8143 1.303643 CAAGCCTCCCCCTGTGTTC 60.304 63.158 0.00 0.00 0.00 3.18
7847 8144 1.142688 ATCAAGCCTCCCCCTGTGTT 61.143 55.000 0.00 0.00 0.00 3.32
7848 8145 1.542375 ATCAAGCCTCCCCCTGTGT 60.542 57.895 0.00 0.00 0.00 3.72
7849 8146 1.077212 CATCAAGCCTCCCCCTGTG 60.077 63.158 0.00 0.00 0.00 3.66
7850 8147 2.311854 CCATCAAGCCTCCCCCTGT 61.312 63.158 0.00 0.00 0.00 4.00
7851 8148 2.599597 CCATCAAGCCTCCCCCTG 59.400 66.667 0.00 0.00 0.00 4.45
7852 8149 2.697644 CCCATCAAGCCTCCCCCT 60.698 66.667 0.00 0.00 0.00 4.79
7853 8150 3.825623 CCCCATCAAGCCTCCCCC 61.826 72.222 0.00 0.00 0.00 5.40
7867 8164 2.452600 TGCACCAGATATTTTCCCCC 57.547 50.000 0.00 0.00 0.00 5.40
7868 8165 2.554032 CGATGCACCAGATATTTTCCCC 59.446 50.000 0.00 0.00 0.00 4.81
7869 8166 3.476552 TCGATGCACCAGATATTTTCCC 58.523 45.455 0.00 0.00 0.00 3.97
7870 8167 4.576463 ACTTCGATGCACCAGATATTTTCC 59.424 41.667 0.00 0.00 0.00 3.13
7871 8168 5.741388 ACTTCGATGCACCAGATATTTTC 57.259 39.130 0.00 0.00 0.00 2.29
7872 8169 6.071952 ACAAACTTCGATGCACCAGATATTTT 60.072 34.615 0.00 0.00 0.00 1.82
7873 8170 5.415701 ACAAACTTCGATGCACCAGATATTT 59.584 36.000 0.00 0.00 0.00 1.40
7874 8171 4.943705 ACAAACTTCGATGCACCAGATATT 59.056 37.500 0.00 0.00 0.00 1.28
7875 8172 4.333649 CACAAACTTCGATGCACCAGATAT 59.666 41.667 0.00 0.00 0.00 1.63
7877 8174 2.485426 CACAAACTTCGATGCACCAGAT 59.515 45.455 0.00 0.00 0.00 2.90
7878 8175 1.872952 CACAAACTTCGATGCACCAGA 59.127 47.619 0.00 0.00 0.00 3.86
7879 8176 1.069022 CCACAAACTTCGATGCACCAG 60.069 52.381 0.00 0.00 0.00 4.00
7880 8177 0.950836 CCACAAACTTCGATGCACCA 59.049 50.000 0.00 0.00 0.00 4.17
7881 8178 0.951558 ACCACAAACTTCGATGCACC 59.048 50.000 0.00 0.00 0.00 5.01
7882 8179 1.925946 GCACCACAAACTTCGATGCAC 60.926 52.381 0.00 0.00 0.00 4.57
7883 8180 0.310543 GCACCACAAACTTCGATGCA 59.689 50.000 0.00 0.00 0.00 3.96
7884 8181 0.593128 AGCACCACAAACTTCGATGC 59.407 50.000 0.00 0.00 0.00 3.91
7885 8182 3.067106 AGTAGCACCACAAACTTCGATG 58.933 45.455 0.00 0.00 0.00 3.84
7886 8183 3.067106 CAGTAGCACCACAAACTTCGAT 58.933 45.455 0.00 0.00 0.00 3.59
7887 8184 2.479837 CAGTAGCACCACAAACTTCGA 58.520 47.619 0.00 0.00 0.00 3.71
7888 8185 1.531149 CCAGTAGCACCACAAACTTCG 59.469 52.381 0.00 0.00 0.00 3.79
7889 8186 2.290641 CACCAGTAGCACCACAAACTTC 59.709 50.000 0.00 0.00 0.00 3.01
7890 8187 2.297701 CACCAGTAGCACCACAAACTT 58.702 47.619 0.00 0.00 0.00 2.66
7891 8188 1.967319 CACCAGTAGCACCACAAACT 58.033 50.000 0.00 0.00 0.00 2.66
7892 8189 0.310854 GCACCAGTAGCACCACAAAC 59.689 55.000 0.00 0.00 0.00 2.93
7893 8190 0.106967 TGCACCAGTAGCACCACAAA 60.107 50.000 0.00 0.00 37.02 2.83
7894 8191 0.110295 ATGCACCAGTAGCACCACAA 59.890 50.000 0.00 0.00 45.95 3.33
7895 8192 0.321564 GATGCACCAGTAGCACCACA 60.322 55.000 0.00 0.00 45.95 4.17
7896 8193 1.361668 CGATGCACCAGTAGCACCAC 61.362 60.000 0.00 0.00 45.95 4.16
7897 8194 1.079197 CGATGCACCAGTAGCACCA 60.079 57.895 0.00 0.00 45.95 4.17
7898 8195 0.391130 TTCGATGCACCAGTAGCACC 60.391 55.000 0.00 0.00 45.95 5.01
7899 8196 0.721718 GTTCGATGCACCAGTAGCAC 59.278 55.000 0.00 0.00 45.95 4.40
7901 8198 1.281899 GAGTTCGATGCACCAGTAGC 58.718 55.000 0.00 0.00 0.00 3.58
7902 8199 2.654749 TGAGTTCGATGCACCAGTAG 57.345 50.000 0.00 0.00 0.00 2.57
7903 8200 4.937201 ATATGAGTTCGATGCACCAGTA 57.063 40.909 0.00 0.00 0.00 2.74
7904 8201 3.827008 ATATGAGTTCGATGCACCAGT 57.173 42.857 0.00 0.00 0.00 4.00
7905 8202 3.873361 ACAATATGAGTTCGATGCACCAG 59.127 43.478 0.00 0.00 0.00 4.00
7906 8203 3.872696 ACAATATGAGTTCGATGCACCA 58.127 40.909 0.00 0.00 0.00 4.17
7907 8204 4.094887 ACAACAATATGAGTTCGATGCACC 59.905 41.667 0.00 0.00 0.00 5.01
7908 8205 5.221891 ACAACAATATGAGTTCGATGCAC 57.778 39.130 0.00 0.00 0.00 4.57
7909 8206 5.878332 AACAACAATATGAGTTCGATGCA 57.122 34.783 0.00 0.00 0.00 3.96
7910 8207 8.667987 TTTAAACAACAATATGAGTTCGATGC 57.332 30.769 0.00 0.00 0.00 3.91
7948 8245 9.227490 CGTGAGTGTGTTAATTTATTTCAACAA 57.773 29.630 0.00 0.00 33.04 2.83
7949 8246 7.377397 GCGTGAGTGTGTTAATTTATTTCAACA 59.623 33.333 0.00 0.00 0.00 3.33
7950 8247 7.377397 TGCGTGAGTGTGTTAATTTATTTCAAC 59.623 33.333 0.00 0.00 0.00 3.18
7951 8248 7.418408 TGCGTGAGTGTGTTAATTTATTTCAA 58.582 30.769 0.00 0.00 0.00 2.69
7952 8249 6.960468 TGCGTGAGTGTGTTAATTTATTTCA 58.040 32.000 0.00 0.00 0.00 2.69
7953 8250 7.377397 TGTTGCGTGAGTGTGTTAATTTATTTC 59.623 33.333 0.00 0.00 0.00 2.17
7954 8251 7.197017 TGTTGCGTGAGTGTGTTAATTTATTT 58.803 30.769 0.00 0.00 0.00 1.40
7955 8252 6.730175 TGTTGCGTGAGTGTGTTAATTTATT 58.270 32.000 0.00 0.00 0.00 1.40
7956 8253 6.307031 TGTTGCGTGAGTGTGTTAATTTAT 57.693 33.333 0.00 0.00 0.00 1.40
7957 8254 5.736486 TGTTGCGTGAGTGTGTTAATTTA 57.264 34.783 0.00 0.00 0.00 1.40
7958 8255 4.624336 TGTTGCGTGAGTGTGTTAATTT 57.376 36.364 0.00 0.00 0.00 1.82
7959 8256 4.829064 ATGTTGCGTGAGTGTGTTAATT 57.171 36.364 0.00 0.00 0.00 1.40
7960 8257 4.829064 AATGTTGCGTGAGTGTGTTAAT 57.171 36.364 0.00 0.00 0.00 1.40
7961 8258 5.736486 TTAATGTTGCGTGAGTGTGTTAA 57.264 34.783 0.00 0.00 0.00 2.01
7962 8259 5.237561 ACATTAATGTTGCGTGAGTGTGTTA 59.762 36.000 15.47 0.00 37.90 2.41
7963 8260 4.036262 ACATTAATGTTGCGTGAGTGTGTT 59.964 37.500 15.47 0.00 37.90 3.32
7964 8261 3.563808 ACATTAATGTTGCGTGAGTGTGT 59.436 39.130 15.47 0.00 37.90 3.72
7965 8262 4.145876 ACATTAATGTTGCGTGAGTGTG 57.854 40.909 15.47 0.00 37.90 3.82
7966 8263 4.391830 CCTACATTAATGTTGCGTGAGTGT 59.608 41.667 25.31 0.89 41.97 3.55
7967 8264 4.391830 ACCTACATTAATGTTGCGTGAGTG 59.608 41.667 25.31 11.35 41.97 3.51
7968 8265 4.575885 ACCTACATTAATGTTGCGTGAGT 58.424 39.130 25.31 13.16 41.97 3.41
7969 8266 5.323900 CAACCTACATTAATGTTGCGTGAG 58.676 41.667 25.31 15.05 41.97 3.51
7970 8267 5.289917 CAACCTACATTAATGTTGCGTGA 57.710 39.130 25.31 6.37 41.97 4.35
7975 8272 5.384063 TGTGGCAACCTACATTAATGTTG 57.616 39.130 25.31 22.01 41.97 3.33
7976 8273 6.412362 TTTGTGGCAACCTACATTAATGTT 57.588 33.333 25.31 5.93 41.97 2.71
7977 8274 6.412362 TTTTGTGGCAACCTACATTAATGT 57.588 33.333 23.80 23.80 44.48 2.71
7978 8275 7.903995 AATTTTGTGGCAACCTACATTAATG 57.096 32.000 14.01 14.01 0.00 1.90
7979 8276 8.916628 AAAATTTTGTGGCAACCTACATTAAT 57.083 26.923 1.75 0.00 0.00 1.40
7980 8277 9.832445 TTAAAATTTTGTGGCAACCTACATTAA 57.168 25.926 13.76 0.00 0.00 1.40
7981 8278 9.832445 TTTAAAATTTTGTGGCAACCTACATTA 57.168 25.926 13.76 0.00 0.00 1.90
7982 8279 8.738645 TTTAAAATTTTGTGGCAACCTACATT 57.261 26.923 13.76 0.00 0.00 2.71
7983 8280 8.916628 ATTTAAAATTTTGTGGCAACCTACAT 57.083 26.923 13.76 0.00 0.00 2.29
7984 8281 7.987458 TGATTTAAAATTTTGTGGCAACCTACA 59.013 29.630 13.76 0.00 0.00 2.74
7985 8282 8.371770 TGATTTAAAATTTTGTGGCAACCTAC 57.628 30.769 13.76 0.00 0.00 3.18
7986 8283 8.964476 TTGATTTAAAATTTTGTGGCAACCTA 57.036 26.923 13.76 0.00 0.00 3.08
7987 8284 7.872113 TTGATTTAAAATTTTGTGGCAACCT 57.128 28.000 13.76 0.00 0.00 3.50
7988 8285 8.917415 TTTTGATTTAAAATTTTGTGGCAACC 57.083 26.923 13.76 0.00 33.48 3.77
8127 8424 4.435386 CGTTGACGCAACATCAATGTATGA 60.435 41.667 18.32 0.00 43.70 2.15
8128 8425 3.780279 CGTTGACGCAACATCAATGTATG 59.220 43.478 18.32 0.00 43.70 2.39
8129 8426 4.002267 CGTTGACGCAACATCAATGTAT 57.998 40.909 18.32 0.00 43.70 2.29
8130 8427 3.447752 CGTTGACGCAACATCAATGTA 57.552 42.857 18.32 0.00 43.70 2.29
8131 8428 1.601903 ACGTTGACGCAACATCAATGT 59.398 42.857 18.32 12.23 46.58 2.71
8132 8429 1.971284 CACGTTGACGCAACATCAATG 59.029 47.619 18.32 11.71 43.70 2.82
8133 8430 1.662876 GCACGTTGACGCAACATCAAT 60.663 47.619 18.32 1.28 43.70 2.57
8134 8431 0.316607 GCACGTTGACGCAACATCAA 60.317 50.000 18.32 2.97 43.70 2.57
8135 8432 1.157257 AGCACGTTGACGCAACATCA 61.157 50.000 18.32 0.00 43.70 3.07
8136 8433 0.787787 TAGCACGTTGACGCAACATC 59.212 50.000 18.32 9.27 43.70 3.06
8137 8434 1.222300 TTAGCACGTTGACGCAACAT 58.778 45.000 18.32 4.88 43.70 2.71
8138 8435 1.007580 TTTAGCACGTTGACGCAACA 58.992 45.000 18.32 0.00 43.70 3.33
8139 8436 2.309898 ATTTAGCACGTTGACGCAAC 57.690 45.000 11.24 11.24 44.43 4.17
8140 8437 3.341857 AAATTTAGCACGTTGACGCAA 57.658 38.095 3.05 0.00 44.43 4.85
8141 8438 3.341857 AAAATTTAGCACGTTGACGCA 57.658 38.095 3.05 0.00 44.43 5.24
8192 8489 1.526887 GTGTTATCGATGCACCGGATG 59.473 52.381 9.46 3.68 0.00 3.51
8193 8490 1.540363 GGTGTTATCGATGCACCGGAT 60.540 52.381 26.85 0.51 42.43 4.18
8194 8491 0.179094 GGTGTTATCGATGCACCGGA 60.179 55.000 26.85 0.00 42.43 5.14
8195 8492 2.307363 GGTGTTATCGATGCACCGG 58.693 57.895 26.85 0.00 42.43 5.28
8198 8495 2.476185 GCTTGTGGTGTTATCGATGCAC 60.476 50.000 19.98 19.98 0.00 4.57
8199 8496 1.737236 GCTTGTGGTGTTATCGATGCA 59.263 47.619 8.54 4.22 0.00 3.96
8200 8497 1.267532 CGCTTGTGGTGTTATCGATGC 60.268 52.381 8.54 1.30 0.00 3.91
8201 8498 1.999735 ACGCTTGTGGTGTTATCGATG 59.000 47.619 8.54 0.00 34.69 3.84
8202 8499 1.999735 CACGCTTGTGGTGTTATCGAT 59.000 47.619 2.16 2.16 40.03 3.59
8203 8500 1.424403 CACGCTTGTGGTGTTATCGA 58.576 50.000 0.00 0.00 40.03 3.59
8204 8501 3.947279 CACGCTTGTGGTGTTATCG 57.053 52.632 0.00 0.00 40.03 2.92
8213 8510 3.964875 GGTGCACCCACGCTTGTG 61.965 66.667 26.31 0.00 43.00 3.33
8218 8515 4.460683 TATCCGGTGCACCCACGC 62.461 66.667 29.95 5.05 43.00 5.34
8219 8516 2.510691 GTATCCGGTGCACCCACG 60.511 66.667 29.95 17.94 43.00 4.94
8220 8517 0.393808 AATGTATCCGGTGCACCCAC 60.394 55.000 29.95 21.00 41.32 4.61
8221 8518 0.107410 GAATGTATCCGGTGCACCCA 60.107 55.000 29.95 21.07 0.00 4.51
8222 8519 0.818040 GGAATGTATCCGGTGCACCC 60.818 60.000 29.95 15.85 38.79 4.61
8223 8520 2.702847 GGAATGTATCCGGTGCACC 58.297 57.895 26.78 26.78 38.79 5.01
8241 8538 2.050350 CCTGCACCCATCAAGCTGG 61.050 63.158 0.00 0.00 40.23 4.85
8242 8539 2.050350 CCCTGCACCCATCAAGCTG 61.050 63.158 0.00 0.00 0.00 4.24
8243 8540 2.357836 CCCTGCACCCATCAAGCT 59.642 61.111 0.00 0.00 0.00 3.74
8266 8563 2.094494 CCTACTGACTAGTGCACCACTG 60.094 54.545 14.63 9.01 45.01 3.66
8269 8566 0.895530 GCCTACTGACTAGTGCACCA 59.104 55.000 14.63 0.00 37.78 4.17
8287 8593 2.084546 GGTTGGTTGTAGATGACCTGC 58.915 52.381 0.00 0.00 36.86 4.85
8290 8596 5.106277 GCTTTTAGGTTGGTTGTAGATGACC 60.106 44.000 0.00 0.00 36.45 4.02
8299 8605 4.599047 TGATTGGCTTTTAGGTTGGTTG 57.401 40.909 0.00 0.00 0.00 3.77
8306 8612 7.730364 AACTATCGTATGATTGGCTTTTAGG 57.270 36.000 2.02 0.00 35.99 2.69
8340 8646 6.485313 CCAACCAGTGACAAAAGTAGTCAATA 59.515 38.462 0.00 0.00 46.50 1.90
8394 8700 2.749044 CAGCTGCATCACGGGCTT 60.749 61.111 0.00 0.00 32.30 4.35
8403 8709 3.643320 TGTAGATTAGTAGCCAGCTGCAT 59.357 43.478 8.66 0.54 44.83 3.96
8429 8735 6.723298 TGAGTTTGAGAGAGAAGAGAAGTT 57.277 37.500 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.