Multiple sequence alignment - TraesCS6D01G255900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G255900 chr6D 100.000 2940 0 0 1 2940 361178131 361181070 0.000000e+00 5430
1 TraesCS6D01G255900 chr6B 90.722 2436 99 49 394 2768 542499379 542501748 0.000000e+00 3129
2 TraesCS6D01G255900 chr6B 93.559 295 17 2 1 293 542498713 542499007 3.480000e-119 438
3 TraesCS6D01G255900 chr6A 92.937 2053 55 18 394 2402 502147475 502149481 0.000000e+00 2905
4 TraesCS6D01G255900 chr6A 96.078 408 13 3 1 406 502147052 502147458 0.000000e+00 662
5 TraesCS6D01G255900 chr6A 88.515 357 28 4 2428 2772 502149557 502149912 1.260000e-113 420
6 TraesCS6D01G255900 chr6A 89.205 176 8 2 2765 2940 409481754 409481590 2.970000e-50 209
7 TraesCS6D01G255900 chr6A 88.068 176 10 2 2765 2940 444902580 444902416 6.430000e-47 198
8 TraesCS6D01G255900 chr1A 90.173 173 15 1 2770 2940 193126245 193126417 1.060000e-54 224
9 TraesCS6D01G255900 chr1A 90.058 171 7 3 2770 2940 457793490 457793330 2.300000e-51 213
10 TraesCS6D01G255900 chr1A 89.474 171 8 1 2770 2940 249850559 249850719 1.070000e-49 207
11 TraesCS6D01G255900 chr7A 90.341 176 6 2 2765 2940 314353222 314353058 1.370000e-53 220
12 TraesCS6D01G255900 chr1D 90.643 171 6 3 2770 2940 211485352 211485192 4.930000e-53 219
13 TraesCS6D01G255900 chr2D 90.058 171 12 1 2770 2940 598090889 598091054 1.770000e-52 217
14 TraesCS6D01G255900 chr3B 88.953 172 15 3 2770 2940 738582484 738582316 2.970000e-50 209
15 TraesCS6D01G255900 chr2B 88.824 170 14 5 2773 2940 634297348 634297182 1.380000e-48 204
16 TraesCS6D01G255900 chr2B 87.421 159 17 2 2782 2940 197270349 197270504 2.330000e-41 180
17 TraesCS6D01G255900 chr7B 88.608 158 15 2 2783 2940 36367611 36367457 3.870000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G255900 chr6D 361178131 361181070 2939 False 5430.0 5430 100.0000 1 2940 1 chr6D.!!$F1 2939
1 TraesCS6D01G255900 chr6B 542498713 542501748 3035 False 1783.5 3129 92.1405 1 2768 2 chr6B.!!$F1 2767
2 TraesCS6D01G255900 chr6A 502147052 502149912 2860 False 1329.0 2905 92.5100 1 2772 3 chr6A.!!$F1 2771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 817 0.666374 CAACCGTTGTCCCCTTCAAC 59.334 55.0 2.87 0.0 40.89 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2425 2889 0.940833 TGGTATTGTGTGTGTGTGCG 59.059 50.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 9.915629 ACTGTACTATTTAGACTTCAGAACTTG 57.084 33.333 0.00 0.00 0.00 3.16
87 90 2.481276 GGTTCGACGATGTGGATCATGA 60.481 50.000 0.00 0.00 36.83 3.07
235 239 1.367471 CGCCACCTGAGTCAGTGAA 59.633 57.895 18.74 0.00 0.00 3.18
278 282 1.740296 CGGGAAGCAAATCGTCCGT 60.740 57.895 0.00 0.00 43.25 4.69
419 793 7.169158 ACCGATAAACATTTCCATTGTTCAT 57.831 32.000 0.00 0.00 36.32 2.57
443 817 0.666374 CAACCGTTGTCCCCTTCAAC 59.334 55.000 2.87 0.00 40.89 3.18
454 828 1.447317 CCCTTCAACAAGCTGCACGT 61.447 55.000 1.02 0.00 0.00 4.49
464 838 0.817634 AGCTGCACGTTTGTAGGCAA 60.818 50.000 1.02 0.00 36.04 4.52
503 877 2.634453 CCAGAAAGGAAAAAGGTGCCAT 59.366 45.455 0.00 0.00 41.22 4.40
623 1000 4.899239 CCTCTCACATCCGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
744 1121 2.298661 ACCTCACCGGTCATTCCCC 61.299 63.158 2.59 0.00 44.93 4.81
834 1211 4.404098 GTACCGCCACCACCCCTG 62.404 72.222 0.00 0.00 0.00 4.45
1008 1397 1.670406 GCTGGCTATCATGGCGAGG 60.670 63.158 7.13 0.00 36.33 4.63
1232 1624 2.649034 GCAGTCGTCTTCCACCGA 59.351 61.111 0.00 0.00 0.00 4.69
1257 1649 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1260 1652 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
1578 1976 1.736645 CCGTACAACCACAGCGAGG 60.737 63.158 0.00 0.00 0.00 4.63
1609 2009 2.418628 GCGCCAAAGCTACAGATTAACA 59.581 45.455 0.00 0.00 36.60 2.41
1613 2013 3.374058 CCAAAGCTACAGATTAACACCGG 59.626 47.826 0.00 0.00 0.00 5.28
2002 2412 1.672363 ACGTCCTTGTGCATGCATATG 59.328 47.619 25.64 21.97 37.36 1.78
2039 2453 4.503714 TCTCTTGGGTTCCATGTATTCC 57.496 45.455 0.00 0.00 31.53 3.01
2123 2537 7.065085 TGCTCACTCTAGTGCTTAATCAAAATC 59.935 37.037 5.21 0.00 45.25 2.17
2173 2587 2.860062 CAGTGCACATTAGAGCAAAGC 58.140 47.619 21.04 0.00 42.92 3.51
2191 2605 7.147976 AGCAAAGCTTAACCAAATTTGTAGAG 58.852 34.615 16.73 9.77 33.89 2.43
2287 2718 1.627297 ATCAACCCCTTCCGCTCTCC 61.627 60.000 0.00 0.00 0.00 3.71
2292 2723 0.038310 CCCCTTCCGCTCTCCTTTTT 59.962 55.000 0.00 0.00 0.00 1.94
2302 2733 3.032017 CTCTCCTTTTTCGAGAGCACA 57.968 47.619 2.14 0.00 45.02 4.57
2323 2754 5.679601 ACATAAATTGTGTGCCCTTTGTTT 58.320 33.333 0.00 0.00 37.11 2.83
2324 2755 6.118852 ACATAAATTGTGTGCCCTTTGTTTT 58.881 32.000 0.00 0.00 37.11 2.43
2325 2756 7.275920 ACATAAATTGTGTGCCCTTTGTTTTA 58.724 30.769 0.00 0.00 37.11 1.52
2326 2757 7.936301 ACATAAATTGTGTGCCCTTTGTTTTAT 59.064 29.630 0.00 0.00 37.11 1.40
2327 2758 9.429359 CATAAATTGTGTGCCCTTTGTTTTATA 57.571 29.630 0.00 0.00 0.00 0.98
2408 2872 4.390603 GTGAGAAGTAAACACACACACACA 59.609 41.667 0.00 0.00 35.06 3.72
2409 2873 4.390603 TGAGAAGTAAACACACACACACAC 59.609 41.667 0.00 0.00 0.00 3.82
2410 2874 4.320023 AGAAGTAAACACACACACACACA 58.680 39.130 0.00 0.00 0.00 3.72
2411 2875 4.153475 AGAAGTAAACACACACACACACAC 59.847 41.667 0.00 0.00 0.00 3.82
2412 2876 2.413796 AGTAAACACACACACACACACG 59.586 45.455 0.00 0.00 0.00 4.49
2413 2877 0.109964 AAACACACACACACACACGC 60.110 50.000 0.00 0.00 0.00 5.34
2414 2878 1.231296 AACACACACACACACACGCA 61.231 50.000 0.00 0.00 0.00 5.24
2416 2880 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
2417 2881 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
2418 2882 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
2419 2883 3.121676 ACACACACACGCACGCAA 61.122 55.556 0.00 0.00 0.00 4.85
2422 2886 4.235025 CACACACGCACGCAAGCA 62.235 61.111 0.00 0.00 45.62 3.91
2443 2957 0.385473 GCGCACACACACACAATACC 60.385 55.000 0.30 0.00 0.00 2.73
2452 2966 1.215673 ACACACAATACCACCCCAACA 59.784 47.619 0.00 0.00 0.00 3.33
2499 3013 1.961277 AAAGCCGCGTCTTGACCAG 60.961 57.895 1.91 0.00 0.00 4.00
2527 3053 2.033372 TGGACTTTGTACACGTCCTGA 58.967 47.619 29.55 16.78 45.75 3.86
2572 3098 2.936498 CAAACGAACTATCCTTGCCGAT 59.064 45.455 0.00 0.00 0.00 4.18
2591 3136 2.566833 TGCACCAACTATGCTTGAGT 57.433 45.000 0.00 0.00 43.77 3.41
2592 3137 2.153645 TGCACCAACTATGCTTGAGTG 58.846 47.619 0.00 0.00 43.77 3.51
2593 3138 1.135575 GCACCAACTATGCTTGAGTGC 60.136 52.381 11.39 11.39 39.22 4.40
2594 3139 1.470098 CACCAACTATGCTTGAGTGCC 59.530 52.381 0.00 0.00 0.00 5.01
2595 3140 1.352352 ACCAACTATGCTTGAGTGCCT 59.648 47.619 0.00 0.00 0.00 4.75
2596 3141 2.571653 ACCAACTATGCTTGAGTGCCTA 59.428 45.455 0.00 0.00 0.00 3.93
2597 3142 3.009033 ACCAACTATGCTTGAGTGCCTAA 59.991 43.478 0.00 0.00 0.00 2.69
2598 3143 4.009675 CCAACTATGCTTGAGTGCCTAAA 58.990 43.478 0.00 0.00 0.00 1.85
2599 3144 4.458989 CCAACTATGCTTGAGTGCCTAAAA 59.541 41.667 0.00 0.00 0.00 1.52
2600 3145 5.392380 CCAACTATGCTTGAGTGCCTAAAAG 60.392 44.000 0.00 0.00 0.00 2.27
2601 3146 5.165961 ACTATGCTTGAGTGCCTAAAAGA 57.834 39.130 0.00 0.00 0.00 2.52
2602 3147 5.181748 ACTATGCTTGAGTGCCTAAAAGAG 58.818 41.667 0.00 0.00 0.00 2.85
2603 3148 3.492102 TGCTTGAGTGCCTAAAAGAGT 57.508 42.857 0.00 0.00 0.00 3.24
2604 3149 3.820557 TGCTTGAGTGCCTAAAAGAGTT 58.179 40.909 0.00 0.00 0.00 3.01
2605 3150 3.565482 TGCTTGAGTGCCTAAAAGAGTTG 59.435 43.478 0.00 0.00 0.00 3.16
2606 3151 3.057946 GCTTGAGTGCCTAAAAGAGTTGG 60.058 47.826 0.00 0.00 0.00 3.77
2607 3152 2.504367 TGAGTGCCTAAAAGAGTTGGC 58.496 47.619 0.00 0.00 45.10 4.52
2627 3172 2.187958 CAGGTGGGTGATAGGACTCAA 58.812 52.381 0.00 0.00 0.00 3.02
2635 3180 4.445879 GGGTGATAGGACTCAAATAACCCC 60.446 50.000 0.00 0.00 0.00 4.95
2684 3229 0.388649 GATGGCGTACATAGCTCCCG 60.389 60.000 0.00 0.00 40.72 5.14
2768 3313 0.460284 CCGATCTGGAACCGAACCTG 60.460 60.000 0.00 0.00 42.00 4.00
2772 3317 3.172106 TGGAACCGAACCTGGGCA 61.172 61.111 0.00 0.00 0.00 5.36
2773 3318 2.359975 GGAACCGAACCTGGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
2774 3319 2.747686 GAACCGAACCTGGGCAGA 59.252 61.111 0.00 0.00 0.00 4.26
2775 3320 1.376037 GAACCGAACCTGGGCAGAG 60.376 63.158 0.00 0.00 0.00 3.35
2776 3321 3.553095 AACCGAACCTGGGCAGAGC 62.553 63.158 0.00 0.00 0.00 4.09
2777 3322 4.020617 CCGAACCTGGGCAGAGCA 62.021 66.667 0.00 0.00 0.00 4.26
2778 3323 2.032528 CGAACCTGGGCAGAGCAA 59.967 61.111 0.00 0.00 0.00 3.91
2779 3324 1.600636 CGAACCTGGGCAGAGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
2780 3325 1.580845 CGAACCTGGGCAGAGCAAAG 61.581 60.000 0.00 0.00 0.00 2.77
2781 3326 1.871126 GAACCTGGGCAGAGCAAAGC 61.871 60.000 0.00 0.00 0.00 3.51
2782 3327 2.035312 CCTGGGCAGAGCAAAGCT 59.965 61.111 0.00 0.00 43.88 3.74
2783 3328 2.341101 CCTGGGCAGAGCAAAGCTG 61.341 63.158 0.00 0.00 39.88 4.24
2784 3329 1.303074 CTGGGCAGAGCAAAGCTGA 60.303 57.895 0.00 0.00 39.88 4.26
2785 3330 0.680280 CTGGGCAGAGCAAAGCTGAT 60.680 55.000 0.00 0.00 39.88 2.90
2786 3331 0.963856 TGGGCAGAGCAAAGCTGATG 60.964 55.000 0.00 0.00 39.88 3.07
2787 3332 0.679002 GGGCAGAGCAAAGCTGATGA 60.679 55.000 0.00 0.00 39.88 2.92
2788 3333 0.450983 GGCAGAGCAAAGCTGATGAC 59.549 55.000 0.00 0.00 39.88 3.06
2789 3334 1.451067 GCAGAGCAAAGCTGATGACT 58.549 50.000 0.00 1.20 39.88 3.41
2790 3335 2.625737 GCAGAGCAAAGCTGATGACTA 58.374 47.619 0.00 0.00 39.88 2.59
2791 3336 2.351111 GCAGAGCAAAGCTGATGACTAC 59.649 50.000 0.00 0.00 39.88 2.73
2792 3337 3.859443 CAGAGCAAAGCTGATGACTACT 58.141 45.455 0.00 0.00 39.88 2.57
2793 3338 3.864583 CAGAGCAAAGCTGATGACTACTC 59.135 47.826 0.00 1.65 39.88 2.59
2794 3339 2.857152 GAGCAAAGCTGATGACTACTCG 59.143 50.000 0.00 0.00 39.88 4.18
2795 3340 2.493675 AGCAAAGCTGATGACTACTCGA 59.506 45.455 4.04 0.00 37.57 4.04
2796 3341 3.131933 AGCAAAGCTGATGACTACTCGAT 59.868 43.478 4.04 0.00 37.57 3.59
2797 3342 4.339530 AGCAAAGCTGATGACTACTCGATA 59.660 41.667 4.04 0.00 37.57 2.92
2798 3343 4.679197 GCAAAGCTGATGACTACTCGATAG 59.321 45.833 4.04 0.00 36.89 2.08
2799 3344 7.854204 AGCAAAGCTGATGACTACTCGATAGT 61.854 42.308 4.04 7.09 41.68 2.12
2800 3345 6.269315 CAAAGCTGATGACTACTCGATAGTT 58.731 40.000 8.34 0.00 44.64 2.24
2801 3346 5.682943 AGCTGATGACTACTCGATAGTTC 57.317 43.478 8.34 5.11 44.64 3.01
2802 3347 5.126779 AGCTGATGACTACTCGATAGTTCA 58.873 41.667 8.34 8.21 44.64 3.18
2803 3348 5.238432 AGCTGATGACTACTCGATAGTTCAG 59.762 44.000 19.46 19.46 44.64 3.02
2804 3349 5.008217 GCTGATGACTACTCGATAGTTCAGT 59.992 44.000 21.73 8.31 44.17 3.41
2805 3350 6.364945 TGATGACTACTCGATAGTTCAGTG 57.635 41.667 8.34 0.00 44.64 3.66
2806 3351 5.880887 TGATGACTACTCGATAGTTCAGTGT 59.119 40.000 8.34 0.00 44.64 3.55
2807 3352 5.547181 TGACTACTCGATAGTTCAGTGTG 57.453 43.478 8.34 0.00 44.64 3.82
2808 3353 4.142665 TGACTACTCGATAGTTCAGTGTGC 60.143 45.833 8.34 0.00 44.64 4.57
2809 3354 2.656560 ACTCGATAGTTCAGTGTGCC 57.343 50.000 0.00 0.00 29.00 5.01
2810 3355 1.893137 ACTCGATAGTTCAGTGTGCCA 59.107 47.619 0.00 0.00 29.00 4.92
2811 3356 2.497675 ACTCGATAGTTCAGTGTGCCAT 59.502 45.455 0.00 0.00 29.00 4.40
2812 3357 2.862536 CTCGATAGTTCAGTGTGCCATG 59.137 50.000 0.00 0.00 37.40 3.66
2813 3358 1.328680 CGATAGTTCAGTGTGCCATGC 59.671 52.381 0.00 0.00 0.00 4.06
2814 3359 2.636830 GATAGTTCAGTGTGCCATGCT 58.363 47.619 0.00 0.00 0.00 3.79
2815 3360 2.566833 TAGTTCAGTGTGCCATGCTT 57.433 45.000 0.00 0.00 0.00 3.91
2816 3361 1.696063 AGTTCAGTGTGCCATGCTTT 58.304 45.000 0.00 0.00 0.00 3.51
2817 3362 2.862541 AGTTCAGTGTGCCATGCTTTA 58.137 42.857 0.00 0.00 0.00 1.85
2818 3363 2.554032 AGTTCAGTGTGCCATGCTTTAC 59.446 45.455 0.00 0.00 0.00 2.01
2819 3364 1.155889 TCAGTGTGCCATGCTTTACG 58.844 50.000 0.00 0.00 0.00 3.18
2820 3365 0.168788 CAGTGTGCCATGCTTTACGG 59.831 55.000 0.00 0.00 0.00 4.02
2821 3366 1.154035 GTGTGCCATGCTTTACGGC 60.154 57.895 0.00 0.00 46.43 5.68
2822 3367 1.303236 TGTGCCATGCTTTACGGCT 60.303 52.632 0.00 0.00 46.39 5.52
2823 3368 0.893270 TGTGCCATGCTTTACGGCTT 60.893 50.000 0.00 0.00 46.39 4.35
2824 3369 1.091537 GTGCCATGCTTTACGGCTTA 58.908 50.000 0.00 0.00 46.39 3.09
2825 3370 1.064060 GTGCCATGCTTTACGGCTTAG 59.936 52.381 0.00 0.00 46.39 2.18
2826 3371 1.065782 TGCCATGCTTTACGGCTTAGA 60.066 47.619 0.00 0.00 46.39 2.10
2827 3372 2.014128 GCCATGCTTTACGGCTTAGAA 58.986 47.619 0.00 0.00 42.78 2.10
2828 3373 2.223272 GCCATGCTTTACGGCTTAGAAC 60.223 50.000 0.00 0.00 42.78 3.01
2829 3374 2.354821 CCATGCTTTACGGCTTAGAACC 59.645 50.000 0.00 0.00 0.00 3.62
2839 3384 3.314541 GGCTTAGAACCGAGACTTCAA 57.685 47.619 0.00 0.00 0.00 2.69
2840 3385 2.994578 GGCTTAGAACCGAGACTTCAAC 59.005 50.000 0.00 0.00 0.00 3.18
2841 3386 2.662156 GCTTAGAACCGAGACTTCAACG 59.338 50.000 0.00 0.00 0.00 4.10
2842 3387 3.611057 GCTTAGAACCGAGACTTCAACGA 60.611 47.826 0.00 0.00 0.00 3.85
2843 3388 2.418983 AGAACCGAGACTTCAACGAC 57.581 50.000 0.00 0.00 0.00 4.34
2844 3389 1.050767 GAACCGAGACTTCAACGACG 58.949 55.000 0.00 0.00 0.00 5.12
2845 3390 0.383231 AACCGAGACTTCAACGACGT 59.617 50.000 0.00 0.00 0.00 4.34
2846 3391 0.317603 ACCGAGACTTCAACGACGTG 60.318 55.000 0.00 0.00 0.00 4.49
2847 3392 1.606350 CCGAGACTTCAACGACGTGC 61.606 60.000 0.00 0.00 0.00 5.34
2848 3393 0.933047 CGAGACTTCAACGACGTGCA 60.933 55.000 0.00 0.00 0.00 4.57
2849 3394 1.205657 GAGACTTCAACGACGTGCAA 58.794 50.000 0.00 0.00 0.00 4.08
2850 3395 1.792949 GAGACTTCAACGACGTGCAAT 59.207 47.619 0.00 0.00 0.00 3.56
2851 3396 1.526887 AGACTTCAACGACGTGCAATG 59.473 47.619 0.00 0.00 0.00 2.82
2852 3397 1.525197 GACTTCAACGACGTGCAATGA 59.475 47.619 0.00 0.00 0.00 2.57
2853 3398 1.260561 ACTTCAACGACGTGCAATGAC 59.739 47.619 0.00 0.00 0.00 3.06
2854 3399 0.231024 TTCAACGACGTGCAATGACG 59.769 50.000 0.00 9.75 46.01 4.35
2874 3419 3.559238 GTTTTGAACGTCATGGAGCAT 57.441 42.857 0.00 0.00 0.00 3.79
2875 3420 4.678509 GTTTTGAACGTCATGGAGCATA 57.321 40.909 0.00 0.00 0.00 3.14
2876 3421 5.235305 GTTTTGAACGTCATGGAGCATAT 57.765 39.130 0.00 0.00 0.00 1.78
2877 3422 4.880886 TTTGAACGTCATGGAGCATATG 57.119 40.909 0.00 0.00 0.00 1.78
2878 3423 3.817709 TGAACGTCATGGAGCATATGA 57.182 42.857 6.97 0.00 32.44 2.15
2879 3424 3.721035 TGAACGTCATGGAGCATATGAG 58.279 45.455 6.97 0.00 35.39 2.90
2880 3425 3.384467 TGAACGTCATGGAGCATATGAGA 59.616 43.478 6.97 0.00 35.39 3.27
2881 3426 4.039609 TGAACGTCATGGAGCATATGAGAT 59.960 41.667 6.97 0.00 35.39 2.75
2882 3427 3.922910 ACGTCATGGAGCATATGAGATG 58.077 45.455 6.97 2.48 35.39 2.90
2883 3428 3.323115 ACGTCATGGAGCATATGAGATGT 59.677 43.478 6.97 2.89 35.39 3.06
2884 3429 4.202295 ACGTCATGGAGCATATGAGATGTT 60.202 41.667 6.97 0.00 35.39 2.71
2885 3430 4.753610 CGTCATGGAGCATATGAGATGTTT 59.246 41.667 6.97 0.00 35.39 2.83
2886 3431 5.107182 CGTCATGGAGCATATGAGATGTTTC 60.107 44.000 6.97 0.00 35.39 2.78
2887 3432 5.761726 GTCATGGAGCATATGAGATGTTTCA 59.238 40.000 6.97 0.00 35.39 2.69
2888 3433 5.995897 TCATGGAGCATATGAGATGTTTCAG 59.004 40.000 6.97 0.00 31.35 3.02
2889 3434 4.711399 TGGAGCATATGAGATGTTTCAGG 58.289 43.478 6.97 0.00 0.00 3.86
2890 3435 4.409901 TGGAGCATATGAGATGTTTCAGGA 59.590 41.667 6.97 0.00 0.00 3.86
2891 3436 4.996122 GGAGCATATGAGATGTTTCAGGAG 59.004 45.833 6.97 0.00 0.00 3.69
2892 3437 5.454471 GGAGCATATGAGATGTTTCAGGAGT 60.454 44.000 6.97 0.00 0.00 3.85
2893 3438 5.999044 AGCATATGAGATGTTTCAGGAGTT 58.001 37.500 6.97 0.00 0.00 3.01
2894 3439 5.821470 AGCATATGAGATGTTTCAGGAGTTG 59.179 40.000 6.97 0.00 0.00 3.16
2895 3440 5.819379 GCATATGAGATGTTTCAGGAGTTGA 59.181 40.000 6.97 0.00 0.00 3.18
2896 3441 6.317140 GCATATGAGATGTTTCAGGAGTTGAA 59.683 38.462 6.97 0.00 43.92 2.69
2897 3442 7.466996 GCATATGAGATGTTTCAGGAGTTGAAG 60.467 40.741 6.97 0.00 46.01 3.02
2898 3443 5.296151 TGAGATGTTTCAGGAGTTGAAGT 57.704 39.130 0.00 0.00 46.01 3.01
2899 3444 5.684704 TGAGATGTTTCAGGAGTTGAAGTT 58.315 37.500 0.00 0.00 46.01 2.66
2900 3445 6.826668 TGAGATGTTTCAGGAGTTGAAGTTA 58.173 36.000 0.00 0.00 46.01 2.24
2901 3446 7.279615 TGAGATGTTTCAGGAGTTGAAGTTAA 58.720 34.615 0.00 0.00 46.01 2.01
2902 3447 7.939039 TGAGATGTTTCAGGAGTTGAAGTTAAT 59.061 33.333 0.00 0.00 46.01 1.40
2903 3448 9.436957 GAGATGTTTCAGGAGTTGAAGTTAATA 57.563 33.333 0.00 0.00 46.01 0.98
2904 3449 9.965902 AGATGTTTCAGGAGTTGAAGTTAATAT 57.034 29.630 0.00 0.00 46.01 1.28
2908 3453 9.543018 GTTTCAGGAGTTGAAGTTAATATTTCG 57.457 33.333 0.00 0.00 46.01 3.46
2909 3454 9.496873 TTTCAGGAGTTGAAGTTAATATTTCGA 57.503 29.630 0.00 0.00 46.01 3.71
2910 3455 8.703604 TCAGGAGTTGAAGTTAATATTTCGAG 57.296 34.615 0.00 0.00 31.34 4.04
2911 3456 7.277981 TCAGGAGTTGAAGTTAATATTTCGAGC 59.722 37.037 0.00 0.00 31.34 5.03
2912 3457 7.064609 CAGGAGTTGAAGTTAATATTTCGAGCA 59.935 37.037 0.00 0.00 0.00 4.26
2913 3458 7.606456 AGGAGTTGAAGTTAATATTTCGAGCAA 59.394 33.333 0.00 0.00 0.00 3.91
2914 3459 8.234546 GGAGTTGAAGTTAATATTTCGAGCAAA 58.765 33.333 0.00 0.00 0.00 3.68
2915 3460 9.774742 GAGTTGAAGTTAATATTTCGAGCAAAT 57.225 29.630 0.00 0.00 38.35 2.32
2916 3461 9.559958 AGTTGAAGTTAATATTTCGAGCAAATG 57.440 29.630 0.00 0.00 35.34 2.32
2917 3462 7.969387 TGAAGTTAATATTTCGAGCAAATGC 57.031 32.000 0.00 0.00 35.34 3.56
2918 3463 6.972328 TGAAGTTAATATTTCGAGCAAATGCC 59.028 34.615 0.94 0.00 43.38 4.40
2919 3464 6.699575 AGTTAATATTTCGAGCAAATGCCT 57.300 33.333 0.94 0.00 43.38 4.75
2920 3465 6.498304 AGTTAATATTTCGAGCAAATGCCTG 58.502 36.000 0.94 0.00 43.38 4.85
2921 3466 6.318648 AGTTAATATTTCGAGCAAATGCCTGA 59.681 34.615 0.94 0.00 43.38 3.86
2922 3467 5.581126 AATATTTCGAGCAAATGCCTGAA 57.419 34.783 0.94 3.95 43.38 3.02
2923 3468 5.779529 ATATTTCGAGCAAATGCCTGAAT 57.220 34.783 9.74 5.40 43.38 2.57
2924 3469 3.940209 TTTCGAGCAAATGCCTGAATT 57.060 38.095 9.74 0.00 43.38 2.17
2925 3470 5.581126 ATTTCGAGCAAATGCCTGAATTA 57.419 34.783 9.74 0.00 43.38 1.40
2926 3471 5.384063 TTTCGAGCAAATGCCTGAATTAA 57.616 34.783 9.74 0.00 43.38 1.40
2927 3472 4.621068 TCGAGCAAATGCCTGAATTAAG 57.379 40.909 0.94 0.00 43.38 1.85
2928 3473 4.260985 TCGAGCAAATGCCTGAATTAAGA 58.739 39.130 0.94 0.00 43.38 2.10
2929 3474 4.333649 TCGAGCAAATGCCTGAATTAAGAG 59.666 41.667 0.94 0.00 43.38 2.85
2930 3475 4.333649 CGAGCAAATGCCTGAATTAAGAGA 59.666 41.667 0.94 0.00 43.38 3.10
2931 3476 5.008415 CGAGCAAATGCCTGAATTAAGAGAT 59.992 40.000 0.94 0.00 43.38 2.75
2932 3477 6.203530 CGAGCAAATGCCTGAATTAAGAGATA 59.796 38.462 0.94 0.00 43.38 1.98
2933 3478 7.094890 CGAGCAAATGCCTGAATTAAGAGATAT 60.095 37.037 0.94 0.00 43.38 1.63
2934 3479 7.883217 AGCAAATGCCTGAATTAAGAGATATG 58.117 34.615 0.94 0.00 43.38 1.78
2935 3480 7.722728 AGCAAATGCCTGAATTAAGAGATATGA 59.277 33.333 0.94 0.00 43.38 2.15
2936 3481 8.355169 GCAAATGCCTGAATTAAGAGATATGAA 58.645 33.333 0.00 0.00 34.31 2.57
2937 3482 9.894783 CAAATGCCTGAATTAAGAGATATGAAG 57.105 33.333 0.00 0.00 0.00 3.02
2938 3483 9.638176 AAATGCCTGAATTAAGAGATATGAAGT 57.362 29.630 0.00 0.00 0.00 3.01
2939 3484 8.845413 ATGCCTGAATTAAGAGATATGAAGTC 57.155 34.615 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 1.475682 ACATCGTCGAACCTCCCTTAC 59.524 52.381 0.00 0.00 0.00 2.34
87 90 4.719106 GTGCTCTGCCCAGCTGCT 62.719 66.667 8.66 0.00 40.39 4.24
419 793 1.153127 GGGGACAACGGTTGTGACA 60.153 57.895 29.46 0.00 45.52 3.58
443 817 0.385974 GCCTACAAACGTGCAGCTTG 60.386 55.000 0.00 0.00 32.47 4.01
454 828 2.177394 TCATCGCTGTTGCCTACAAA 57.823 45.000 0.00 0.00 37.58 2.83
464 838 1.417517 TGGCCTGATAATCATCGCTGT 59.582 47.619 3.32 0.00 33.51 4.40
503 877 0.675083 TCGGCGTCAGTAAAAGTCCA 59.325 50.000 6.85 0.00 0.00 4.02
744 1121 2.487428 CAGCACGAGAGGACGAGG 59.513 66.667 0.00 0.00 37.03 4.63
952 1341 2.083002 CTCTCTCTGCCTTTCTTTGCC 58.917 52.381 0.00 0.00 0.00 4.52
1210 1602 4.719369 GGAAGACGACTGCGCGGT 62.719 66.667 24.62 24.62 42.48 5.68
1232 1624 2.767352 AGGAGGAGGACTGCTCGT 59.233 61.111 13.54 11.66 45.79 4.18
1440 1832 1.298993 CATCTCCACCAGCAGCACT 59.701 57.895 0.00 0.00 0.00 4.40
1558 1956 3.419759 CGCTGTGGTTGTACGGGC 61.420 66.667 0.00 0.00 0.00 6.13
1598 1998 2.093869 GTGCCTCCGGTGTTAATCTGTA 60.094 50.000 0.00 0.00 0.00 2.74
1613 2013 4.767255 CTCCCCTGCACGTGCCTC 62.767 72.222 35.72 11.45 41.18 4.70
2039 2453 1.750778 AGCCAATTAATTCCTGCACCG 59.249 47.619 13.42 0.00 0.00 4.94
2049 2463 3.701040 CTGTACAAGGCCAGCCAATTAAT 59.299 43.478 12.03 0.00 38.92 1.40
2368 2805 1.764854 ACCCGGTTGTGGTGAGAGT 60.765 57.895 0.00 0.00 33.94 3.24
2417 2881 4.235025 TGTGTGTGCGCGTGCTTG 62.235 61.111 23.16 0.00 43.34 4.01
2418 2882 4.236416 GTGTGTGTGCGCGTGCTT 62.236 61.111 23.16 0.00 43.34 3.91
2422 2886 1.154814 TATTGTGTGTGTGTGCGCGT 61.155 50.000 8.43 0.00 0.00 6.01
2425 2889 0.940833 TGGTATTGTGTGTGTGTGCG 59.059 50.000 0.00 0.00 0.00 5.34
2443 2957 0.609131 GACCCTCATGTGTTGGGGTG 60.609 60.000 16.15 0.00 45.60 4.61
2452 2966 4.536090 TCAATTTAGGACAGACCCTCATGT 59.464 41.667 0.00 0.00 40.05 3.21
2499 3013 3.122948 CGTGTACAAAGTCCATACAGTGC 59.877 47.826 0.00 0.00 29.67 4.40
2527 3053 0.037326 TGCCGCTCTTTCGAGTTGAT 60.037 50.000 0.00 0.00 39.53 2.57
2544 3070 5.618561 CAAGGATAGTTCGTTTGTAGTTGC 58.381 41.667 0.00 0.00 0.00 4.17
2550 3076 2.073816 CGGCAAGGATAGTTCGTTTGT 58.926 47.619 0.00 0.00 0.00 2.83
2572 3098 2.153645 CACTCAAGCATAGTTGGTGCA 58.846 47.619 0.69 0.00 44.87 4.57
2593 3138 2.162681 CCACCTGCCAACTCTTTTAGG 58.837 52.381 0.00 0.00 0.00 2.69
2594 3139 2.162681 CCCACCTGCCAACTCTTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
2595 3140 1.497286 ACCCACCTGCCAACTCTTTTA 59.503 47.619 0.00 0.00 0.00 1.52
2596 3141 0.261696 ACCCACCTGCCAACTCTTTT 59.738 50.000 0.00 0.00 0.00 2.27
2597 3142 0.468029 CACCCACCTGCCAACTCTTT 60.468 55.000 0.00 0.00 0.00 2.52
2598 3143 1.151450 CACCCACCTGCCAACTCTT 59.849 57.895 0.00 0.00 0.00 2.85
2599 3144 1.136329 ATCACCCACCTGCCAACTCT 61.136 55.000 0.00 0.00 0.00 3.24
2600 3145 0.618458 TATCACCCACCTGCCAACTC 59.382 55.000 0.00 0.00 0.00 3.01
2601 3146 0.620556 CTATCACCCACCTGCCAACT 59.379 55.000 0.00 0.00 0.00 3.16
2602 3147 0.394352 CCTATCACCCACCTGCCAAC 60.394 60.000 0.00 0.00 0.00 3.77
2603 3148 0.548926 TCCTATCACCCACCTGCCAA 60.549 55.000 0.00 0.00 0.00 4.52
2604 3149 1.082019 TCCTATCACCCACCTGCCA 59.918 57.895 0.00 0.00 0.00 4.92
2605 3150 0.983378 AGTCCTATCACCCACCTGCC 60.983 60.000 0.00 0.00 0.00 4.85
2606 3151 0.466124 GAGTCCTATCACCCACCTGC 59.534 60.000 0.00 0.00 0.00 4.85
2607 3152 1.866015 TGAGTCCTATCACCCACCTG 58.134 55.000 0.00 0.00 0.00 4.00
2608 3153 2.642171 TTGAGTCCTATCACCCACCT 57.358 50.000 0.00 0.00 0.00 4.00
2609 3154 3.933861 ATTTGAGTCCTATCACCCACC 57.066 47.619 0.00 0.00 0.00 4.61
2610 3155 5.123936 GGTTATTTGAGTCCTATCACCCAC 58.876 45.833 0.00 0.00 0.00 4.61
2627 3172 3.295973 CCATGACATTTCCGGGGTTATT 58.704 45.455 0.00 0.00 0.00 1.40
2635 3180 2.420022 GTCCAAGACCATGACATTTCCG 59.580 50.000 0.00 0.00 0.00 4.30
2667 3212 1.755395 ACGGGAGCTATGTACGCCA 60.755 57.895 0.00 0.00 0.00 5.69
2684 3229 3.364366 CGCTGTTCTGGATTGTTCTTCAC 60.364 47.826 0.00 0.00 0.00 3.18
2717 3262 1.363744 CCTCGACATTGTTCCTCTGC 58.636 55.000 0.00 0.00 0.00 4.26
2768 3313 0.679002 TCATCAGCTTTGCTCTGCCC 60.679 55.000 0.00 0.00 36.40 5.36
2772 3317 3.428725 CGAGTAGTCATCAGCTTTGCTCT 60.429 47.826 0.00 0.00 36.40 4.09
2773 3318 2.857152 CGAGTAGTCATCAGCTTTGCTC 59.143 50.000 0.00 0.00 36.40 4.26
2774 3319 2.493675 TCGAGTAGTCATCAGCTTTGCT 59.506 45.455 0.00 0.00 40.77 3.91
2775 3320 2.881074 TCGAGTAGTCATCAGCTTTGC 58.119 47.619 0.00 0.00 0.00 3.68
2776 3321 5.826586 ACTATCGAGTAGTCATCAGCTTTG 58.173 41.667 0.00 0.00 39.46 2.77
2777 3322 6.095580 TGAACTATCGAGTAGTCATCAGCTTT 59.904 38.462 7.64 0.00 42.83 3.51
2778 3323 5.590663 TGAACTATCGAGTAGTCATCAGCTT 59.409 40.000 7.64 0.00 42.83 3.74
2779 3324 5.126779 TGAACTATCGAGTAGTCATCAGCT 58.873 41.667 7.64 0.00 42.83 4.24
2780 3325 5.008217 ACTGAACTATCGAGTAGTCATCAGC 59.992 44.000 21.39 0.00 44.67 4.26
2781 3326 6.037720 ACACTGAACTATCGAGTAGTCATCAG 59.962 42.308 20.68 20.68 45.47 2.90
2782 3327 5.880887 ACACTGAACTATCGAGTAGTCATCA 59.119 40.000 7.64 7.90 42.83 3.07
2783 3328 6.195868 CACACTGAACTATCGAGTAGTCATC 58.804 44.000 7.64 4.77 42.83 2.92
2784 3329 5.449314 GCACACTGAACTATCGAGTAGTCAT 60.449 44.000 7.64 0.00 42.83 3.06
2785 3330 4.142665 GCACACTGAACTATCGAGTAGTCA 60.143 45.833 7.64 1.11 42.83 3.41
2786 3331 4.344448 GCACACTGAACTATCGAGTAGTC 58.656 47.826 7.64 0.00 42.83 2.59
2787 3332 3.128938 GGCACACTGAACTATCGAGTAGT 59.871 47.826 0.00 0.00 45.56 2.73
2788 3333 3.128764 TGGCACACTGAACTATCGAGTAG 59.871 47.826 0.00 0.00 33.58 2.57
2789 3334 3.086282 TGGCACACTGAACTATCGAGTA 58.914 45.455 0.00 0.00 33.58 2.59
2790 3335 1.893137 TGGCACACTGAACTATCGAGT 59.107 47.619 0.00 0.00 37.59 4.18
2791 3336 2.654749 TGGCACACTGAACTATCGAG 57.345 50.000 0.00 0.00 0.00 4.04
2808 3353 2.354821 GGTTCTAAGCCGTAAAGCATGG 59.645 50.000 0.00 0.00 36.25 3.66
2809 3354 2.030457 CGGTTCTAAGCCGTAAAGCATG 59.970 50.000 0.00 0.00 43.84 4.06
2810 3355 2.277084 CGGTTCTAAGCCGTAAAGCAT 58.723 47.619 0.00 0.00 43.84 3.79
2811 3356 1.717194 CGGTTCTAAGCCGTAAAGCA 58.283 50.000 0.00 0.00 43.84 3.91
2819 3364 2.994578 GTTGAAGTCTCGGTTCTAAGCC 59.005 50.000 0.00 0.00 0.00 4.35
2820 3365 2.662156 CGTTGAAGTCTCGGTTCTAAGC 59.338 50.000 0.00 0.00 0.00 3.09
2821 3366 3.913163 GTCGTTGAAGTCTCGGTTCTAAG 59.087 47.826 0.00 0.00 0.00 2.18
2822 3367 3.607775 CGTCGTTGAAGTCTCGGTTCTAA 60.608 47.826 0.00 0.00 0.00 2.10
2823 3368 2.096069 CGTCGTTGAAGTCTCGGTTCTA 60.096 50.000 0.00 0.00 0.00 2.10
2824 3369 1.334779 CGTCGTTGAAGTCTCGGTTCT 60.335 52.381 0.00 0.00 0.00 3.01
2825 3370 1.050767 CGTCGTTGAAGTCTCGGTTC 58.949 55.000 0.00 0.00 0.00 3.62
2826 3371 0.383231 ACGTCGTTGAAGTCTCGGTT 59.617 50.000 0.00 0.00 0.00 4.44
2827 3372 0.317603 CACGTCGTTGAAGTCTCGGT 60.318 55.000 0.00 0.00 0.00 4.69
2828 3373 1.606350 GCACGTCGTTGAAGTCTCGG 61.606 60.000 0.00 0.00 0.00 4.63
2829 3374 0.933047 TGCACGTCGTTGAAGTCTCG 60.933 55.000 0.00 0.00 0.00 4.04
2830 3375 1.205657 TTGCACGTCGTTGAAGTCTC 58.794 50.000 0.00 0.00 0.00 3.36
2831 3376 1.526887 CATTGCACGTCGTTGAAGTCT 59.473 47.619 0.00 0.00 0.00 3.24
2832 3377 1.525197 TCATTGCACGTCGTTGAAGTC 59.475 47.619 0.00 0.00 0.00 3.01
2833 3378 1.260561 GTCATTGCACGTCGTTGAAGT 59.739 47.619 0.00 0.00 0.00 3.01
2834 3379 1.718361 CGTCATTGCACGTCGTTGAAG 60.718 52.381 0.00 0.00 34.95 3.02
2835 3380 0.231024 CGTCATTGCACGTCGTTGAA 59.769 50.000 0.00 0.00 34.95 2.69
2836 3381 1.849973 CGTCATTGCACGTCGTTGA 59.150 52.632 0.00 0.00 34.95 3.18
2837 3382 4.398113 CGTCATTGCACGTCGTTG 57.602 55.556 0.00 0.00 34.95 4.10
2854 3399 3.559238 ATGCTCCATGACGTTCAAAAC 57.441 42.857 0.00 0.00 0.00 2.43
2855 3400 4.940654 TCATATGCTCCATGACGTTCAAAA 59.059 37.500 0.00 0.00 0.00 2.44
2856 3401 4.512484 TCATATGCTCCATGACGTTCAAA 58.488 39.130 0.00 0.00 0.00 2.69
2857 3402 4.122046 CTCATATGCTCCATGACGTTCAA 58.878 43.478 0.00 0.00 0.00 2.69
2858 3403 3.384467 TCTCATATGCTCCATGACGTTCA 59.616 43.478 0.00 0.00 0.00 3.18
2859 3404 3.982475 TCTCATATGCTCCATGACGTTC 58.018 45.455 0.00 0.00 0.00 3.95
2860 3405 4.202295 ACATCTCATATGCTCCATGACGTT 60.202 41.667 0.00 0.00 0.00 3.99
2861 3406 3.323115 ACATCTCATATGCTCCATGACGT 59.677 43.478 0.00 0.00 0.00 4.34
2862 3407 3.922910 ACATCTCATATGCTCCATGACG 58.077 45.455 0.00 0.00 0.00 4.35
2863 3408 5.761726 TGAAACATCTCATATGCTCCATGAC 59.238 40.000 0.00 0.00 0.00 3.06
2864 3409 5.932455 TGAAACATCTCATATGCTCCATGA 58.068 37.500 0.00 0.00 0.00 3.07
2865 3410 5.181433 CCTGAAACATCTCATATGCTCCATG 59.819 44.000 0.00 0.28 0.00 3.66
2866 3411 5.072736 TCCTGAAACATCTCATATGCTCCAT 59.927 40.000 0.00 0.00 0.00 3.41
2867 3412 4.409901 TCCTGAAACATCTCATATGCTCCA 59.590 41.667 0.00 0.00 0.00 3.86
2868 3413 4.965814 TCCTGAAACATCTCATATGCTCC 58.034 43.478 0.00 0.00 0.00 4.70
2869 3414 5.609423 ACTCCTGAAACATCTCATATGCTC 58.391 41.667 0.00 0.00 0.00 4.26
2870 3415 5.627182 ACTCCTGAAACATCTCATATGCT 57.373 39.130 0.00 0.00 0.00 3.79
2871 3416 5.819379 TCAACTCCTGAAACATCTCATATGC 59.181 40.000 0.00 0.00 0.00 3.14
2872 3417 7.551974 ACTTCAACTCCTGAAACATCTCATATG 59.448 37.037 0.00 0.00 43.54 1.78
2873 3418 7.628234 ACTTCAACTCCTGAAACATCTCATAT 58.372 34.615 0.00 0.00 43.54 1.78
2874 3419 7.009179 ACTTCAACTCCTGAAACATCTCATA 57.991 36.000 0.00 0.00 43.54 2.15
2875 3420 5.874093 ACTTCAACTCCTGAAACATCTCAT 58.126 37.500 0.00 0.00 43.54 2.90
2876 3421 5.296151 ACTTCAACTCCTGAAACATCTCA 57.704 39.130 0.00 0.00 43.54 3.27
2877 3422 7.730364 TTAACTTCAACTCCTGAAACATCTC 57.270 36.000 0.00 0.00 43.54 2.75
2878 3423 9.965902 ATATTAACTTCAACTCCTGAAACATCT 57.034 29.630 0.00 0.00 43.54 2.90
2882 3427 9.543018 CGAAATATTAACTTCAACTCCTGAAAC 57.457 33.333 0.00 0.00 43.54 2.78
2883 3428 9.496873 TCGAAATATTAACTTCAACTCCTGAAA 57.503 29.630 0.00 0.00 43.54 2.69
2884 3429 9.151471 CTCGAAATATTAACTTCAACTCCTGAA 57.849 33.333 0.00 0.00 41.93 3.02
2885 3430 7.277981 GCTCGAAATATTAACTTCAACTCCTGA 59.722 37.037 0.00 0.00 0.00 3.86
2886 3431 7.064609 TGCTCGAAATATTAACTTCAACTCCTG 59.935 37.037 0.00 0.00 0.00 3.86
2887 3432 7.103641 TGCTCGAAATATTAACTTCAACTCCT 58.896 34.615 0.00 0.00 0.00 3.69
2888 3433 7.303634 TGCTCGAAATATTAACTTCAACTCC 57.696 36.000 0.00 0.00 0.00 3.85
2889 3434 9.774742 ATTTGCTCGAAATATTAACTTCAACTC 57.225 29.630 0.00 0.00 32.10 3.01
2890 3435 9.559958 CATTTGCTCGAAATATTAACTTCAACT 57.440 29.630 0.00 0.00 32.65 3.16
2891 3436 8.313931 GCATTTGCTCGAAATATTAACTTCAAC 58.686 33.333 0.00 0.00 38.21 3.18
2892 3437 7.487829 GGCATTTGCTCGAAATATTAACTTCAA 59.512 33.333 2.12 0.00 41.70 2.69
2893 3438 6.972328 GGCATTTGCTCGAAATATTAACTTCA 59.028 34.615 2.12 0.00 41.70 3.02
2894 3439 7.166473 CAGGCATTTGCTCGAAATATTAACTTC 59.834 37.037 2.12 0.00 41.70 3.01
2895 3440 6.974622 CAGGCATTTGCTCGAAATATTAACTT 59.025 34.615 2.12 0.00 41.70 2.66
2896 3441 6.318648 TCAGGCATTTGCTCGAAATATTAACT 59.681 34.615 2.12 0.00 41.70 2.24
2897 3442 6.494842 TCAGGCATTTGCTCGAAATATTAAC 58.505 36.000 2.12 0.00 41.70 2.01
2898 3443 6.691754 TCAGGCATTTGCTCGAAATATTAA 57.308 33.333 2.12 0.00 41.70 1.40
2899 3444 6.691754 TTCAGGCATTTGCTCGAAATATTA 57.308 33.333 2.12 0.00 41.70 0.98
2900 3445 5.581126 TTCAGGCATTTGCTCGAAATATT 57.419 34.783 2.12 0.00 41.70 1.28
2901 3446 5.779529 ATTCAGGCATTTGCTCGAAATAT 57.220 34.783 2.12 0.00 41.70 1.28
2902 3447 5.581126 AATTCAGGCATTTGCTCGAAATA 57.419 34.783 2.12 0.00 41.70 1.40
2903 3448 4.460948 AATTCAGGCATTTGCTCGAAAT 57.539 36.364 2.12 0.00 41.70 2.17
2904 3449 3.940209 AATTCAGGCATTTGCTCGAAA 57.060 38.095 2.12 0.00 41.70 3.46
2905 3450 4.699735 TCTTAATTCAGGCATTTGCTCGAA 59.300 37.500 2.12 6.15 41.70 3.71
2906 3451 4.260985 TCTTAATTCAGGCATTTGCTCGA 58.739 39.130 2.12 0.00 41.70 4.04
2907 3452 4.333649 TCTCTTAATTCAGGCATTTGCTCG 59.666 41.667 2.12 0.00 41.70 5.03
2908 3453 5.824904 TCTCTTAATTCAGGCATTTGCTC 57.175 39.130 2.12 0.00 41.70 4.26
2909 3454 7.722728 TCATATCTCTTAATTCAGGCATTTGCT 59.277 33.333 2.12 0.00 41.70 3.91
2910 3455 7.879070 TCATATCTCTTAATTCAGGCATTTGC 58.121 34.615 0.00 0.00 41.14 3.68
2911 3456 9.894783 CTTCATATCTCTTAATTCAGGCATTTG 57.105 33.333 0.00 0.00 0.00 2.32
2912 3457 9.638176 ACTTCATATCTCTTAATTCAGGCATTT 57.362 29.630 0.00 0.00 0.00 2.32
2913 3458 9.282569 GACTTCATATCTCTTAATTCAGGCATT 57.717 33.333 0.00 0.00 0.00 3.56
2914 3459 8.845413 GACTTCATATCTCTTAATTCAGGCAT 57.155 34.615 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.