Multiple sequence alignment - TraesCS6D01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G255600 chr6D 100.000 5847 0 0 1 5847 360753383 360747537 0.000000e+00 10798.0
1 TraesCS6D01G255600 chr6D 98.842 2245 16 4 448 2690 360745659 360747895 0.000000e+00 3993.0
2 TraesCS6D01G255600 chr6D 98.892 361 2 1 5489 5847 360750694 360751054 1.370000e-180 643.0
3 TraesCS6D01G255600 chr6D 92.683 123 7 2 5333 5454 360747930 360748051 6.020000e-40 176.0
4 TraesCS6D01G255600 chr6D 100.000 29 0 0 5451 5479 360747590 360747562 3.000000e-03 54.7
5 TraesCS6D01G255600 chr6D 100.000 29 0 0 5451 5479 360751001 360751029 3.000000e-03 54.7
6 TraesCS6D01G255600 chr1D 96.294 5397 165 22 4 5389 42044340 42038968 0.000000e+00 8826.0
7 TraesCS6D01G255600 chr1D 95.364 5414 205 21 1 5389 162594029 162599421 0.000000e+00 8565.0
8 TraesCS6D01G255600 chr1D 96.247 3864 117 18 1542 5389 485426492 485422641 0.000000e+00 6307.0
9 TraesCS6D01G255600 chr1D 98.485 66 1 0 5389 5454 485422632 485422697 3.700000e-22 117.0
10 TraesCS6D01G255600 chr7D 96.110 5399 159 21 1 5389 346630134 346624777 0.000000e+00 8759.0
11 TraesCS6D01G255600 chr7D 95.749 4775 144 23 656 5390 608293214 608288459 0.000000e+00 7638.0
12 TraesCS6D01G255600 chr5D 93.093 3692 177 22 1732 5389 201706431 201702784 0.000000e+00 5334.0
13 TraesCS6D01G255600 chr2A 96.683 3045 85 12 1744 4778 171836712 171839750 0.000000e+00 5049.0
14 TraesCS6D01G255600 chr2A 96.360 577 20 1 4814 5389 171839748 171840324 0.000000e+00 948.0
15 TraesCS6D01G255600 chr2A 96.961 362 7 2 5489 5846 171837666 171837305 6.480000e-169 604.0
16 TraesCS6D01G255600 chr2A 98.485 66 1 0 5389 5454 171840333 171840268 3.700000e-22 117.0
17 TraesCS6D01G255600 chr2B 96.650 3045 84 14 1744 4778 93122601 93125637 0.000000e+00 5042.0
18 TraesCS6D01G255600 chr2B 96.961 362 7 2 5489 5846 93123555 93123194 6.480000e-169 604.0
19 TraesCS6D01G255600 chr2B 98.485 66 1 0 5389 5454 93126220 93126155 3.700000e-22 117.0
20 TraesCS6D01G255600 chr4B 96.649 3044 84 14 1744 4777 622886285 622883250 0.000000e+00 5040.0
21 TraesCS6D01G255600 chr4B 96.617 3045 86 13 1744 4778 445329352 445332389 0.000000e+00 5036.0
22 TraesCS6D01G255600 chr4B 97.422 1668 42 1 1 1668 622887963 622886297 0.000000e+00 2841.0
23 TraesCS6D01G255600 chr4B 97.242 1668 43 1 1 1668 445327676 445329340 0.000000e+00 2822.0
24 TraesCS6D01G255600 chr4B 96.360 577 20 1 4814 5389 445332387 445332963 0.000000e+00 948.0
25 TraesCS6D01G255600 chr4B 96.685 362 7 3 5489 5846 622885332 622885692 1.080000e-166 597.0
26 TraesCS6D01G255600 chr4B 98.485 66 1 0 5389 5454 445332972 445332907 3.700000e-22 117.0
27 TraesCS6D01G255600 chr4B 100.000 29 0 0 5451 5479 445329997 445329969 3.000000e-03 54.7
28 TraesCS6D01G255600 chr4B 100.000 29 0 0 5451 5479 622885640 622885668 3.000000e-03 54.7
29 TraesCS6D01G255600 chr6A 96.617 3045 87 12 1744 4778 46110239 46113277 0.000000e+00 5038.0
30 TraesCS6D01G255600 chr6A 97.422 1668 42 1 1 1668 46108561 46110227 0.000000e+00 2841.0
31 TraesCS6D01G255600 chr6A 97.364 1669 42 2 1 1668 46139477 46141144 0.000000e+00 2837.0
32 TraesCS6D01G255600 chr6A 96.961 362 7 2 5489 5846 46111193 46110832 6.480000e-169 604.0
33 TraesCS6D01G255600 chr6A 96.961 362 7 2 5489 5846 46142110 46141749 6.480000e-169 604.0
34 TraesCS6D01G255600 chr6A 98.485 66 1 0 5389 5454 46113858 46113793 3.700000e-22 117.0
35 TraesCS6D01G255600 chr6A 98.485 66 1 0 5389 5454 46115639 46115574 3.700000e-22 117.0
36 TraesCS6D01G255600 chr6A 100.000 29 0 0 5451 5479 46110884 46110856 3.000000e-03 54.7
37 TraesCS6D01G255600 chr6A 100.000 29 0 0 5451 5479 46141801 46141773 3.000000e-03 54.7
38 TraesCS6D01G255600 chr5A 96.617 3045 87 12 1744 4778 617310922 617307884 0.000000e+00 5038.0
39 TraesCS6D01G255600 chr5A 97.238 362 6 2 5489 5846 617309968 617310329 1.390000e-170 610.0
40 TraesCS6D01G255600 chr5A 97.015 67 2 0 5389 5455 370095507 370095441 4.790000e-21 113.0
41 TraesCS6D01G255600 chr5A 100.000 29 0 0 5451 5479 617310277 617310305 3.000000e-03 54.7
42 TraesCS6D01G255600 chr3B 97.662 1668 37 1 1 1668 777040821 777039156 0.000000e+00 2863.0
43 TraesCS6D01G255600 chr3B 96.360 577 20 1 4814 5389 777036109 777035533 0.000000e+00 948.0
44 TraesCS6D01G255600 chr3B 96.961 362 7 2 5489 5846 777038191 777038552 6.480000e-169 604.0
45 TraesCS6D01G255600 chr3B 98.485 66 1 0 5389 5454 777035524 777035589 3.700000e-22 117.0
46 TraesCS6D01G255600 chr3B 100.000 29 0 0 5451 5479 777038500 777038528 3.000000e-03 54.7
47 TraesCS6D01G255600 chrUn 96.409 362 9 2 5489 5846 269557307 269556946 1.400000e-165 593.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G255600 chr6D 360747537 360753383 5846 True 10798.000000 10798 100.000000 1 5847 1 chr6D.!!$R1 5846
1 TraesCS6D01G255600 chr6D 360745659 360751054 5395 False 1216.675000 3993 97.604250 448 5847 4 chr6D.!!$F1 5399
2 TraesCS6D01G255600 chr1D 42038968 42044340 5372 True 8826.000000 8826 96.294000 4 5389 1 chr1D.!!$R1 5385
3 TraesCS6D01G255600 chr1D 162594029 162599421 5392 False 8565.000000 8565 95.364000 1 5389 1 chr1D.!!$F1 5388
4 TraesCS6D01G255600 chr1D 485422641 485426492 3851 True 6307.000000 6307 96.247000 1542 5389 1 chr1D.!!$R2 3847
5 TraesCS6D01G255600 chr7D 346624777 346630134 5357 True 8759.000000 8759 96.110000 1 5389 1 chr7D.!!$R1 5388
6 TraesCS6D01G255600 chr7D 608288459 608293214 4755 True 7638.000000 7638 95.749000 656 5390 1 chr7D.!!$R2 4734
7 TraesCS6D01G255600 chr5D 201702784 201706431 3647 True 5334.000000 5334 93.093000 1732 5389 1 chr5D.!!$R1 3657
8 TraesCS6D01G255600 chr2A 171836712 171840324 3612 False 2998.500000 5049 96.521500 1744 5389 2 chr2A.!!$F1 3645
9 TraesCS6D01G255600 chr2A 171837305 171840333 3028 True 360.500000 604 97.723000 5389 5846 2 chr2A.!!$R1 457
10 TraesCS6D01G255600 chr2B 93122601 93125637 3036 False 5042.000000 5042 96.650000 1744 4778 1 chr2B.!!$F1 3034
11 TraesCS6D01G255600 chr2B 93123194 93126220 3026 True 360.500000 604 97.723000 5389 5846 2 chr2B.!!$R1 457
12 TraesCS6D01G255600 chr4B 622883250 622887963 4713 True 3940.500000 5040 97.035500 1 4777 2 chr4B.!!$R2 4776
13 TraesCS6D01G255600 chr4B 445327676 445332963 5287 False 2935.333333 5036 96.739667 1 5389 3 chr4B.!!$F1 5388
14 TraesCS6D01G255600 chr6A 46108561 46113277 4716 False 3939.500000 5038 97.019500 1 4778 2 chr6A.!!$F2 4777
15 TraesCS6D01G255600 chr6A 46139477 46141144 1667 False 2837.000000 2837 97.364000 1 1668 1 chr6A.!!$F1 1667
16 TraesCS6D01G255600 chr6A 46110832 46115639 4807 True 223.175000 604 98.482750 5389 5846 4 chr6A.!!$R1 457
17 TraesCS6D01G255600 chr5A 617307884 617310922 3038 True 5038.000000 5038 96.617000 1744 4778 1 chr5A.!!$R2 3034
18 TraesCS6D01G255600 chr3B 777035533 777040821 5288 True 1905.500000 2863 97.011000 1 5389 2 chr3B.!!$R1 5388
19 TraesCS6D01G255600 chr3B 777035524 777038552 3028 False 258.566667 604 98.482000 5389 5846 3 chr3B.!!$F1 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 602 2.224606 CGCAAATGACCCATCTGCTAT 58.775 47.619 4.1 0.0 35.87 2.97 F
1690 1696 1.024046 ACACACACACACGCACACAT 61.024 50.000 0.0 0.0 0.00 3.21 F
1691 1697 0.589479 CACACACACACGCACACATG 60.589 55.000 0.0 0.0 0.00 3.21 F
2863 2974 3.181367 CACAGCCGGTGCAATCTC 58.819 61.111 1.9 0.0 41.36 2.75 F
3272 3384 0.396417 AGTCTGGGGATGACCTCTCG 60.396 60.000 0.0 0.0 37.59 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1698 0.111310 CGTGCGTGTGTGTGTGTATG 60.111 55.0 0.00 0.0 0.00 2.39 R
3029 3140 0.974383 TCAAAGTCGACTCCCCCTTC 59.026 55.0 20.33 0.0 0.00 3.46 R
3195 3307 1.609208 GTGTTGAGGCACATCACCTT 58.391 50.0 13.16 0.0 40.98 3.50 R
4465 4611 0.390340 CCCCATCGCCATAGTGATCG 60.390 60.0 0.00 0.0 41.34 3.69 R
5230 5438 2.025981 TCACCTAGGTAGTAAGCCGACA 60.026 50.0 15.80 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 3.005684 TGATGTGAATGGCTTTCGCTTTT 59.994 39.130 22.21 10.92 43.79 2.27
330 332 5.012664 TCAAAGTATCCTTCACAGCTGGTAA 59.987 40.000 19.93 10.61 0.00 2.85
415 417 3.426615 TGCGAAATTAGGTTTGGTGGAT 58.573 40.909 0.00 0.00 0.00 3.41
433 435 6.214615 TGGTGGATATAAAGTGGTCTTCAAGA 59.785 38.462 0.00 0.00 32.90 3.02
600 602 2.224606 CGCAAATGACCCATCTGCTAT 58.775 47.619 4.10 0.00 35.87 2.97
1303 1309 1.034838 AACTCGGCCAACTGCACAAA 61.035 50.000 2.24 0.00 43.89 2.83
1366 1372 5.186021 GGTCTCAGACTAGAGGAAATTGACA 59.814 44.000 4.40 0.00 36.30 3.58
1568 1574 1.696884 ACCGCCAATTGGTCCAAAAAT 59.303 42.857 25.19 0.00 33.35 1.82
1688 1694 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
1689 1695 1.669437 ACACACACACACGCACACA 60.669 52.632 0.00 0.00 0.00 3.72
1690 1696 1.024046 ACACACACACACGCACACAT 61.024 50.000 0.00 0.00 0.00 3.21
1691 1697 0.589479 CACACACACACGCACACATG 60.589 55.000 0.00 0.00 0.00 3.21
1740 1839 4.022416 ACACACACACACACATTGTTTCTT 60.022 37.500 0.00 0.00 35.67 2.52
2258 2361 5.533154 GTCTACTATGTGAGCACTGGAGTAT 59.467 44.000 1.99 0.00 0.00 2.12
2259 2362 6.711194 GTCTACTATGTGAGCACTGGAGTATA 59.289 42.308 1.99 0.00 0.00 1.47
2260 2363 5.776173 ACTATGTGAGCACTGGAGTATAC 57.224 43.478 1.99 0.00 0.00 1.47
2263 2366 3.697166 TGTGAGCACTGGAGTATACTGA 58.303 45.455 10.90 0.00 0.00 3.41
2267 2372 6.109359 GTGAGCACTGGAGTATACTGAATTT 58.891 40.000 10.90 0.00 0.00 1.82
2629 2739 7.769970 TCATCATGAGAACTATGTGCATAACAA 59.230 33.333 0.09 0.00 43.61 2.83
2863 2974 3.181367 CACAGCCGGTGCAATCTC 58.819 61.111 1.90 0.00 41.36 2.75
2890 3001 3.181494 GGAGGAGCGTCTAGAAAGAGAAC 60.181 52.174 0.00 0.00 30.45 3.01
2984 3095 4.997395 TCTTGTAAATTGGAGTCTGAGTGC 59.003 41.667 0.00 0.00 0.00 4.40
3029 3140 3.476552 TGTTTGTAGTCTTTGGCTGAGG 58.523 45.455 0.00 0.00 0.00 3.86
3195 3307 0.610785 GGCGGATTTCAAAGGGGACA 60.611 55.000 0.00 0.00 0.00 4.02
3272 3384 0.396417 AGTCTGGGGATGACCTCTCG 60.396 60.000 0.00 0.00 37.59 4.04
3490 3623 4.042062 TCACCCAAGAGAAATGACTGATGT 59.958 41.667 0.00 0.00 0.00 3.06
3586 3724 3.372206 CACACTTGATAGCCTACAGTTGC 59.628 47.826 0.00 0.00 0.00 4.17
3616 3754 4.635765 TGTTTCTCTGTACATATGCCTTGC 59.364 41.667 1.58 0.00 0.00 4.01
3884 4025 9.466497 TCTTCCTTTATCTAAGCATTGTTGAAT 57.534 29.630 0.00 0.00 32.19 2.57
4106 4247 1.275291 CACTGTTGATAGTGGGGTCGT 59.725 52.381 0.45 0.00 43.35 4.34
4142 4283 6.293955 GCACAGTACTTGGAAAATGTGTATGT 60.294 38.462 0.00 0.00 40.05 2.29
4178 4324 4.154737 TGCGATTCATGTTTCCTCTGAAAG 59.845 41.667 0.00 0.00 41.02 2.62
4200 4346 5.551233 AGTTTCATGTGAAGGATCGAAAGA 58.449 37.500 0.00 0.00 39.01 2.52
4375 4521 1.544825 GCAGGACTGGAGGCAGTACA 61.545 60.000 0.00 0.00 38.48 2.90
4465 4611 4.655762 TCTGTATGGTGATGAGCACTAC 57.344 45.455 0.00 0.00 46.86 2.73
4521 4679 3.195396 GGAGATGAGGATGACTATGGCTC 59.805 52.174 0.00 0.00 0.00 4.70
4522 4680 4.088634 GAGATGAGGATGACTATGGCTCT 58.911 47.826 0.00 0.00 0.00 4.09
4523 4681 3.833650 AGATGAGGATGACTATGGCTCTG 59.166 47.826 0.00 0.00 0.00 3.35
4524 4682 2.323599 TGAGGATGACTATGGCTCTGG 58.676 52.381 0.00 0.00 0.00 3.86
4525 4683 1.001860 GAGGATGACTATGGCTCTGGC 59.998 57.143 0.00 0.00 37.82 4.85
4526 4684 1.055040 GGATGACTATGGCTCTGGCT 58.945 55.000 0.00 0.00 38.73 4.75
4888 5096 4.771114 ATGGTGGAAAATATGTCTCGGA 57.229 40.909 0.00 0.00 0.00 4.55
5010 5218 1.829222 CCTCGGCTAACAGGTTTCCTA 59.171 52.381 0.00 0.00 29.64 2.94
5221 5429 0.738389 GGTCACAATAACATGCCCGG 59.262 55.000 0.00 0.00 0.00 5.73
5465 8086 6.454795 ACTAAAACCGACGAAAATAGTACCA 58.545 36.000 0.00 0.00 0.00 3.25
5468 8089 4.789012 ACCGACGAAAATAGTACCAGAA 57.211 40.909 0.00 0.00 0.00 3.02
5471 8092 6.168389 ACCGACGAAAATAGTACCAGAAATT 58.832 36.000 0.00 0.00 0.00 1.82
5473 8094 6.311935 CCGACGAAAATAGTACCAGAAATTGA 59.688 38.462 0.00 0.00 0.00 2.57
5475 8096 7.057149 ACGAAAATAGTACCAGAAATTGACG 57.943 36.000 0.00 0.00 0.00 4.35
5476 8097 6.647895 ACGAAAATAGTACCAGAAATTGACGT 59.352 34.615 0.00 0.00 0.00 4.34
5477 8098 6.953743 CGAAAATAGTACCAGAAATTGACGTG 59.046 38.462 0.00 0.00 0.00 4.49
5478 8099 7.359765 CGAAAATAGTACCAGAAATTGACGTGT 60.360 37.037 0.00 0.00 0.00 4.49
5480 8101 8.836268 AAATAGTACCAGAAATTGACGTGTTA 57.164 30.769 0.00 0.00 0.00 2.41
5481 8102 7.823149 ATAGTACCAGAAATTGACGTGTTAC 57.177 36.000 0.00 0.00 0.00 2.50
5483 8104 6.985117 AGTACCAGAAATTGACGTGTTACTA 58.015 36.000 0.00 0.00 0.00 1.82
5484 8105 7.436118 AGTACCAGAAATTGACGTGTTACTAA 58.564 34.615 0.00 0.00 0.00 2.24
5486 8107 7.556733 ACCAGAAATTGACGTGTTACTAAAA 57.443 32.000 0.00 0.00 0.00 1.52
5487 8108 7.412063 ACCAGAAATTGACGTGTTACTAAAAC 58.588 34.615 0.00 0.00 0.00 2.43
5832 10435 1.697772 TTGACGTGTGGCGACAACAC 61.698 55.000 2.03 12.31 46.46 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
381 383 3.598019 ATTTCGCATTTGGCTTCACAT 57.402 38.095 0.00 0.00 41.67 3.21
433 435 9.777297 ATGGCAAATTGTTCAAAATTACTTAGT 57.223 25.926 0.00 0.00 0.00 2.24
450 452 1.276989 CTTGGTGAGCCATGGCAAATT 59.723 47.619 37.18 18.19 45.56 1.82
600 602 6.389869 ACCACCTTCCTGGAAATATTCATCTA 59.610 38.462 10.86 0.00 39.71 1.98
1303 1309 5.937111 TCTTGGTGTTCTAGGCTTTTTAGT 58.063 37.500 0.00 0.00 0.00 2.24
1366 1372 1.772836 ACGGGAACTATAAGCGGTCT 58.227 50.000 0.00 0.00 0.00 3.85
1568 1574 4.647611 ACACAATACCGGTTTCTGATCAA 58.352 39.130 15.04 0.00 0.00 2.57
1688 1694 1.725611 GCGTGTGTGTGTGTATGCATG 60.726 52.381 10.16 0.00 0.00 4.06
1689 1695 0.516877 GCGTGTGTGTGTGTATGCAT 59.483 50.000 3.79 3.79 0.00 3.96
1690 1696 0.811616 TGCGTGTGTGTGTGTATGCA 60.812 50.000 0.00 0.00 33.09 3.96
1691 1697 0.384230 GTGCGTGTGTGTGTGTATGC 60.384 55.000 0.00 0.00 0.00 3.14
1692 1698 0.111310 CGTGCGTGTGTGTGTGTATG 60.111 55.000 0.00 0.00 0.00 2.39
1693 1699 1.827315 GCGTGCGTGTGTGTGTGTAT 61.827 55.000 0.00 0.00 0.00 2.29
1694 1700 2.518312 GCGTGCGTGTGTGTGTGTA 61.518 57.895 0.00 0.00 0.00 2.90
1695 1701 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1696 1702 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
1697 1703 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1698 1704 3.858989 TGTGCGTGCGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
1699 1705 3.860125 GTGTGCGTGCGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
2863 2974 2.642154 TCTAGACGCTCCTCCTTAGG 57.358 55.000 0.00 0.00 45.21 2.69
2890 3001 4.572985 TCTCCTGCTTCAAATGTTTGTG 57.427 40.909 5.48 2.28 39.18 3.33
2984 3095 2.751259 AGCATGTCAGCACAAACCTATG 59.249 45.455 0.00 0.00 35.64 2.23
3029 3140 0.974383 TCAAAGTCGACTCCCCCTTC 59.026 55.000 20.33 0.00 0.00 3.46
3195 3307 1.609208 GTGTTGAGGCACATCACCTT 58.391 50.000 13.16 0.00 40.98 3.50
3490 3623 7.459795 TCAACCATCAAGTATTTACATGCAA 57.540 32.000 0.00 0.00 0.00 4.08
3586 3724 6.722301 CATATGTACAGAGAAACAAGCATGG 58.278 40.000 0.33 0.00 0.00 3.66
3616 3754 6.253746 GCATATGTACAGAGAAACAAGCAAG 58.746 40.000 0.33 0.00 0.00 4.01
3884 4025 2.301870 ACAGAGGCTTTACCGAACATGA 59.698 45.455 0.00 0.00 46.52 3.07
4106 4247 8.706322 TTCCAAGTACTGTGCATATCTATCTA 57.294 34.615 0.00 0.00 0.00 1.98
4142 4283 8.846943 AACATGAATCGCAGGAACATATATTA 57.153 30.769 0.00 0.00 31.50 0.98
4148 4293 3.129287 GGAAACATGAATCGCAGGAACAT 59.871 43.478 0.00 0.00 31.50 2.71
4178 4324 5.862924 TCTTTCGATCCTTCACATGAAAC 57.137 39.130 0.00 0.00 33.07 2.78
4200 4346 9.758021 TTATCCAACAATATGATGCCTATTCAT 57.242 29.630 0.00 0.00 37.56 2.57
4375 4521 6.009908 TCCTCATCATCATTTCCATGACTT 57.990 37.500 0.00 0.00 42.46 3.01
4465 4611 0.390340 CCCCATCGCCATAGTGATCG 60.390 60.000 0.00 0.00 41.34 3.69
4523 4681 4.626081 ATCGCCACCGCCATAGCC 62.626 66.667 0.00 0.00 34.57 3.93
4524 4682 3.349006 CATCGCCACCGCCATAGC 61.349 66.667 0.00 0.00 0.00 2.97
4525 4683 2.666190 CCATCGCCACCGCCATAG 60.666 66.667 0.00 0.00 0.00 2.23
4526 4684 4.927782 GCCATCGCCACCGCCATA 62.928 66.667 0.00 0.00 0.00 2.74
4653 4823 9.590451 CCACATTTTGCATAAGATAAATTGTCT 57.410 29.630 0.00 0.00 30.19 3.41
4888 5096 4.354987 AGTCCCCATTGGCATTCTGTATAT 59.645 41.667 0.00 0.00 0.00 0.86
5010 5218 4.479619 GTCGACAGTGTATACGACCTTTT 58.520 43.478 19.79 0.00 45.76 2.27
5221 5429 3.642778 TAAGCCGACAGTGAGCCGC 62.643 63.158 0.00 0.00 0.00 6.53
5230 5438 2.025981 TCACCTAGGTAGTAAGCCGACA 60.026 50.000 15.80 0.00 0.00 4.35
5463 8084 6.854381 GGTTTTAGTAACACGTCAATTTCTGG 59.146 38.462 0.00 0.00 0.00 3.86
5465 8086 7.556733 TGGTTTTAGTAACACGTCAATTTCT 57.443 32.000 0.00 0.00 0.00 2.52
5468 8089 9.589111 AAAAATGGTTTTAGTAACACGTCAATT 57.411 25.926 0.00 0.00 35.12 2.32
5471 8092 7.759465 TGAAAAATGGTTTTAGTAACACGTCA 58.241 30.769 0.00 0.00 37.07 4.35
5473 8094 9.026074 CAATGAAAAATGGTTTTAGTAACACGT 57.974 29.630 0.00 0.00 37.07 4.49
5475 8096 8.279800 GGCAATGAAAAATGGTTTTAGTAACAC 58.720 33.333 0.00 0.00 37.07 3.32
5476 8097 8.207545 AGGCAATGAAAAATGGTTTTAGTAACA 58.792 29.630 0.00 0.00 37.07 2.41
5477 8098 8.601845 AGGCAATGAAAAATGGTTTTAGTAAC 57.398 30.769 0.00 0.00 37.07 2.50
5480 8101 9.435688 GATAAGGCAATGAAAAATGGTTTTAGT 57.564 29.630 0.00 0.00 37.07 2.24
5481 8102 9.434420 TGATAAGGCAATGAAAAATGGTTTTAG 57.566 29.630 0.00 0.00 37.07 1.85
5483 8104 8.688747 TTGATAAGGCAATGAAAAATGGTTTT 57.311 26.923 0.00 0.00 39.70 2.43
5484 8105 8.688747 TTTGATAAGGCAATGAAAAATGGTTT 57.311 26.923 0.00 0.00 0.00 3.27
5486 8107 8.866970 ATTTTGATAAGGCAATGAAAAATGGT 57.133 26.923 2.47 0.00 28.15 3.55
5487 8108 8.400186 GGATTTTGATAAGGCAATGAAAAATGG 58.600 33.333 0.00 0.00 28.15 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.