Multiple sequence alignment - TraesCS6D01G255500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G255500 chr6D 100.000 5209 0 0 1 5209 360692652 360687444 0.000000e+00 9620.0
1 TraesCS6D01G255500 chr6D 92.611 785 33 17 23 792 423361779 423361005 0.000000e+00 1105.0
2 TraesCS6D01G255500 chr6D 90.136 811 53 15 1 792 82197522 82198324 0.000000e+00 1029.0
3 TraesCS6D01G255500 chr6D 95.283 106 5 0 1668 1773 360690887 360690782 8.970000e-38 169.0
4 TraesCS6D01G255500 chr6D 95.283 106 5 0 1766 1871 360690985 360690880 8.970000e-38 169.0
5 TraesCS6D01G255500 chr6A 96.511 1605 47 8 1766 3366 501804716 501803117 0.000000e+00 2645.0
6 TraesCS6D01G255500 chr6A 90.852 951 54 13 845 1773 501805550 501804611 0.000000e+00 1243.0
7 TraesCS6D01G255500 chr6A 93.715 716 21 13 4508 5209 501801957 501801252 0.000000e+00 1051.0
8 TraesCS6D01G255500 chr6A 97.670 515 8 3 3641 4154 501802966 501802455 0.000000e+00 881.0
9 TraesCS6D01G255500 chr6A 93.351 376 21 2 4187 4562 501802386 501802015 2.120000e-153 553.0
10 TraesCS6D01G255500 chr6A 97.927 193 3 1 3405 3597 501803118 501802927 3.010000e-87 333.0
11 TraesCS6D01G255500 chr6B 93.786 1030 41 9 4187 5209 542232799 542231786 0.000000e+00 1526.0
12 TraesCS6D01G255500 chr6B 95.767 945 26 11 2431 3366 542234554 542233615 0.000000e+00 1511.0
13 TraesCS6D01G255500 chr6B 90.880 943 63 15 845 1773 542236005 542235072 0.000000e+00 1243.0
14 TraesCS6D01G255500 chr6B 95.067 750 32 5 3405 4152 542233616 542232870 0.000000e+00 1175.0
15 TraesCS6D01G255500 chr6B 93.689 618 37 2 1770 2387 542235173 542234558 0.000000e+00 924.0
16 TraesCS6D01G255500 chr6B 97.500 40 1 0 3558 3597 542233381 542233342 9.360000e-08 69.4
17 TraesCS6D01G255500 chr2D 92.625 800 36 18 1 792 13653616 13654400 0.000000e+00 1129.0
18 TraesCS6D01G255500 chr2D 90.932 805 53 14 1 792 516833667 516834464 0.000000e+00 1064.0
19 TraesCS6D01G255500 chr2D 92.222 90 7 0 3177 3266 613102095 613102006 1.520000e-25 128.0
20 TraesCS6D01G255500 chr1D 91.740 799 42 15 1 792 247133499 247134280 0.000000e+00 1088.0
21 TraesCS6D01G255500 chr1D 92.119 774 45 11 26 792 415986234 415986998 0.000000e+00 1077.0
22 TraesCS6D01G255500 chr7D 91.511 801 51 13 1 792 621758354 621759146 0.000000e+00 1086.0
23 TraesCS6D01G255500 chr4D 92.139 776 43 14 23 792 488605103 488604340 0.000000e+00 1079.0
24 TraesCS6D01G255500 chr4D 91.465 785 50 12 11 792 82495056 82495826 0.000000e+00 1062.0
25 TraesCS6D01G255500 chr2B 89.130 92 6 2 3177 3268 748427592 748427505 1.530000e-20 111.0
26 TraesCS6D01G255500 chr2A 89.655 87 9 0 3177 3263 744789584 744789498 1.530000e-20 111.0
27 TraesCS6D01G255500 chr2A 95.556 45 1 1 3268 3311 744789409 744789365 2.600000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G255500 chr6D 360687444 360692652 5208 True 3319.333333 9620 96.855333 1 5209 3 chr6D.!!$R2 5208
1 TraesCS6D01G255500 chr6D 423361005 423361779 774 True 1105.000000 1105 92.611000 23 792 1 chr6D.!!$R1 769
2 TraesCS6D01G255500 chr6D 82197522 82198324 802 False 1029.000000 1029 90.136000 1 792 1 chr6D.!!$F1 791
3 TraesCS6D01G255500 chr6A 501801252 501805550 4298 True 1117.666667 2645 95.004333 845 5209 6 chr6A.!!$R1 4364
4 TraesCS6D01G255500 chr6B 542231786 542236005 4219 True 1074.733333 1526 94.448167 845 5209 6 chr6B.!!$R1 4364
5 TraesCS6D01G255500 chr2D 13653616 13654400 784 False 1129.000000 1129 92.625000 1 792 1 chr2D.!!$F1 791
6 TraesCS6D01G255500 chr2D 516833667 516834464 797 False 1064.000000 1064 90.932000 1 792 1 chr2D.!!$F2 791
7 TraesCS6D01G255500 chr1D 247133499 247134280 781 False 1088.000000 1088 91.740000 1 792 1 chr1D.!!$F1 791
8 TraesCS6D01G255500 chr1D 415986234 415986998 764 False 1077.000000 1077 92.119000 26 792 1 chr1D.!!$F2 766
9 TraesCS6D01G255500 chr7D 621758354 621759146 792 False 1086.000000 1086 91.511000 1 792 1 chr7D.!!$F1 791
10 TraesCS6D01G255500 chr4D 488604340 488605103 763 True 1079.000000 1079 92.139000 23 792 1 chr4D.!!$R1 769
11 TraesCS6D01G255500 chr4D 82495056 82495826 770 False 1062.000000 1062 91.465000 11 792 1 chr4D.!!$F1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 852 0.033504 GCACGGTTGACCTGAGAAGA 59.966 55.000 0.00 0.0 0.00 2.87 F
1380 1437 0.233848 CGTTGGGTTTGACGTGCTAC 59.766 55.000 0.00 0.0 34.75 3.58 F
2135 2205 0.391661 AAGCTCTGTATGGTGGCACG 60.392 55.000 12.17 0.0 0.00 5.34 F
2226 2296 0.824109 TCTCGATGTTGTAGGGGCAG 59.176 55.000 0.00 0.0 0.00 4.85 F
3643 3807 2.103263 ACAAGCTCTGTCGGAGAAAACT 59.897 45.455 13.17 0.0 44.45 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1814 2.393764 GCAACAAGCATGGTTACACAC 58.606 47.619 10.31 0.00 44.79 3.82 R
2226 2296 2.426842 AACATAGGGCTCTTCTTGGC 57.573 50.000 0.00 0.00 0.00 4.52 R
4110 4275 2.034685 GTCAAAGGGTTGCCTCAAGAAC 59.965 50.000 0.00 0.00 34.50 3.01 R
4146 4311 2.821366 GCCACTGCACTGGATCCG 60.821 66.667 15.78 4.62 37.47 4.18 R
4975 5299 0.473755 TTGCTTGGAAGAGTGAGGCA 59.526 50.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 268 1.337817 CTTTCGCGAGAGTCACGGTG 61.338 60.000 17.92 0.56 43.69 4.94
282 307 0.235926 GGTTGTGCTTTCGTGAGAGC 59.764 55.000 5.51 5.51 43.69 4.09
330 361 3.963340 AACAAAACGCGTTTTCTGTTG 57.037 38.095 35.68 30.37 40.45 3.33
364 397 1.597663 CGAGAGTCACGGTTTTGCTTT 59.402 47.619 1.62 0.00 0.00 3.51
368 401 0.248296 GTCACGGTTTTGCTTTCGCA 60.248 50.000 0.00 0.00 46.24 5.10
527 563 3.726517 CACGGGCGTGCCTCTTTG 61.727 66.667 11.25 0.00 39.39 2.77
578 623 4.600692 TTTCTTTCCATGAGAGTCACGA 57.399 40.909 0.00 0.00 0.00 4.35
773 822 6.435904 AGGAATCCAATGATGAAAACGGTTTA 59.564 34.615 6.53 0.00 0.00 2.01
792 841 0.591170 AAGATTTGGACGCACGGTTG 59.409 50.000 0.00 0.00 0.00 3.77
793 842 0.250124 AGATTTGGACGCACGGTTGA 60.250 50.000 0.00 0.00 0.00 3.18
794 843 0.110373 GATTTGGACGCACGGTTGAC 60.110 55.000 0.00 0.00 0.00 3.18
795 844 1.512156 ATTTGGACGCACGGTTGACC 61.512 55.000 0.00 0.00 0.00 4.02
796 845 2.596553 TTTGGACGCACGGTTGACCT 62.597 55.000 0.00 0.00 0.00 3.85
797 846 3.041940 GGACGCACGGTTGACCTG 61.042 66.667 0.00 0.00 0.00 4.00
798 847 2.028484 GACGCACGGTTGACCTGA 59.972 61.111 0.00 0.00 0.00 3.86
799 848 2.022129 GACGCACGGTTGACCTGAG 61.022 63.158 0.00 1.17 0.00 3.35
800 849 2.338620 CGCACGGTTGACCTGAGA 59.661 61.111 0.00 0.00 0.00 3.27
801 850 1.300620 CGCACGGTTGACCTGAGAA 60.301 57.895 0.00 0.00 0.00 2.87
802 851 1.284982 CGCACGGTTGACCTGAGAAG 61.285 60.000 0.00 0.00 0.00 2.85
803 852 0.033504 GCACGGTTGACCTGAGAAGA 59.966 55.000 0.00 0.00 0.00 2.87
804 853 1.338200 GCACGGTTGACCTGAGAAGAT 60.338 52.381 0.00 0.00 0.00 2.40
805 854 2.341257 CACGGTTGACCTGAGAAGATG 58.659 52.381 0.00 0.00 0.00 2.90
806 855 2.029020 CACGGTTGACCTGAGAAGATGA 60.029 50.000 0.00 0.00 0.00 2.92
807 856 2.632996 ACGGTTGACCTGAGAAGATGAA 59.367 45.455 0.00 0.00 0.00 2.57
808 857 3.257393 CGGTTGACCTGAGAAGATGAAG 58.743 50.000 0.00 0.00 0.00 3.02
809 858 3.306364 CGGTTGACCTGAGAAGATGAAGT 60.306 47.826 0.00 0.00 0.00 3.01
810 859 3.999663 GGTTGACCTGAGAAGATGAAGTG 59.000 47.826 0.00 0.00 0.00 3.16
811 860 4.503991 GGTTGACCTGAGAAGATGAAGTGT 60.504 45.833 0.00 0.00 0.00 3.55
812 861 4.963318 TGACCTGAGAAGATGAAGTGTT 57.037 40.909 0.00 0.00 0.00 3.32
813 862 5.296151 TGACCTGAGAAGATGAAGTGTTT 57.704 39.130 0.00 0.00 0.00 2.83
814 863 5.684704 TGACCTGAGAAGATGAAGTGTTTT 58.315 37.500 0.00 0.00 0.00 2.43
815 864 6.122277 TGACCTGAGAAGATGAAGTGTTTTT 58.878 36.000 0.00 0.00 0.00 1.94
859 908 4.022329 TGATTTCGACAAGTAGCTCTGACA 60.022 41.667 0.00 0.00 0.00 3.58
919 971 2.577059 GATCGTTGGTCCGCTCCA 59.423 61.111 0.00 0.00 35.49 3.86
924 976 1.374758 GTTGGTCCGCTCCAGAGTG 60.375 63.158 1.09 1.09 38.80 3.51
925 977 1.837051 TTGGTCCGCTCCAGAGTGT 60.837 57.895 7.40 0.00 38.80 3.55
926 978 2.099652 TTGGTCCGCTCCAGAGTGTG 62.100 60.000 7.40 0.00 38.80 3.82
985 1037 0.243636 CCCCACCTTTTTCATCGCAC 59.756 55.000 0.00 0.00 0.00 5.34
1053 1105 0.747852 CTCCTCCTAGGTTTCGCTCC 59.252 60.000 9.08 0.00 36.53 4.70
1216 1269 5.422970 TGGCTTAATCAGAAGATGCCATTTT 59.577 36.000 9.38 0.00 42.57 1.82
1249 1302 0.825010 TAGCCCGTCGATCCCCTTAC 60.825 60.000 0.00 0.00 0.00 2.34
1336 1393 1.774085 CGTCTCGTCGAATCGATTTCC 59.226 52.381 12.81 0.00 38.42 3.13
1352 1409 4.549599 CGATTTCCGTGTGATTTTTCTTCG 59.450 41.667 0.00 0.00 0.00 3.79
1357 1414 3.499157 CCGTGTGATTTTTCTTCGGGTTA 59.501 43.478 0.00 0.00 34.05 2.85
1380 1437 0.233848 CGTTGGGTTTGACGTGCTAC 59.766 55.000 0.00 0.00 34.75 3.58
1406 1463 3.322466 CAGGTGTCGAGGGGGCTT 61.322 66.667 0.00 0.00 0.00 4.35
1556 1617 1.596752 TTCGTTGTGAGTGGCGCAT 60.597 52.632 10.83 0.00 36.78 4.73
1560 1621 1.529622 CGTTGTGAGTGGCGCATATTG 60.530 52.381 10.83 0.00 36.78 1.90
1584 1645 3.576982 TCTGACGGTCTGGTCAACTTATT 59.423 43.478 14.00 0.00 45.59 1.40
1585 1646 3.659786 TGACGGTCTGGTCAACTTATTG 58.340 45.455 9.88 0.00 43.55 1.90
1632 1693 0.680921 TATGTTTGCCTGCCTGCCTC 60.681 55.000 0.00 0.00 0.00 4.70
1643 1704 1.581447 CCTGCCTCCGCAAAGAAAC 59.419 57.895 0.00 0.00 46.66 2.78
1645 1706 1.152860 TGCCTCCGCAAAGAAACCA 60.153 52.632 0.00 0.00 43.74 3.67
1667 1729 5.628797 AACATTTTCTTGTTGGGTTCCAT 57.371 34.783 0.00 0.00 38.37 3.41
1687 1757 7.615039 TCCATATGTCATTATGGCCAAAATT 57.385 32.000 10.96 0.00 45.57 1.82
1688 1758 8.718158 TCCATATGTCATTATGGCCAAAATTA 57.282 30.769 10.96 0.00 45.57 1.40
1690 1760 7.818930 CCATATGTCATTATGGCCAAAATTACC 59.181 37.037 10.96 0.00 41.54 2.85
1695 1765 7.125507 TGTCATTATGGCCAAAATTACCTGATT 59.874 33.333 10.96 0.00 0.00 2.57
1713 1783 5.124617 CCTGATTTTGAGAAACCTAGCCTTC 59.875 44.000 0.00 0.00 0.00 3.46
1730 1800 8.831550 CCTAGCCTTCACTGATTTTAAACTATC 58.168 37.037 0.00 0.00 0.00 2.08
1733 1803 7.554476 AGCCTTCACTGATTTTAAACTATCTCC 59.446 37.037 2.44 0.00 0.00 3.71
1735 1805 8.887717 CCTTCACTGATTTTAAACTATCTCCTG 58.112 37.037 2.44 0.00 0.00 3.86
1737 1807 9.793259 TTCACTGATTTTAAACTATCTCCTGTT 57.207 29.630 2.44 0.00 0.00 3.16
1746 1816 9.667107 TTTAAACTATCTCCTGTTCTATTGGTG 57.333 33.333 0.00 0.00 0.00 4.17
1747 1817 6.875972 AACTATCTCCTGTTCTATTGGTGT 57.124 37.500 0.00 0.00 0.00 4.16
1748 1818 6.227298 ACTATCTCCTGTTCTATTGGTGTG 57.773 41.667 0.00 0.00 0.00 3.82
1749 1819 5.721960 ACTATCTCCTGTTCTATTGGTGTGT 59.278 40.000 0.00 0.00 0.00 3.72
1750 1820 6.895756 ACTATCTCCTGTTCTATTGGTGTGTA 59.104 38.462 0.00 0.00 0.00 2.90
1751 1821 6.620877 ATCTCCTGTTCTATTGGTGTGTAA 57.379 37.500 0.00 0.00 0.00 2.41
1752 1822 5.790593 TCTCCTGTTCTATTGGTGTGTAAC 58.209 41.667 0.00 0.00 37.35 2.50
1764 1834 2.393764 GTGTGTAACCATGCTTGTTGC 58.606 47.619 0.00 0.00 38.09 4.17
1765 1835 2.034558 GTGTGTAACCATGCTTGTTGCT 59.965 45.455 0.00 0.00 38.35 3.91
1766 1836 3.252215 GTGTGTAACCATGCTTGTTGCTA 59.748 43.478 0.00 0.00 38.35 3.49
1767 1837 4.078537 TGTGTAACCATGCTTGTTGCTAT 58.921 39.130 0.00 0.00 38.35 2.97
1768 1838 4.155826 TGTGTAACCATGCTTGTTGCTATC 59.844 41.667 0.00 0.00 38.35 2.08
1769 1839 4.396166 GTGTAACCATGCTTGTTGCTATCT 59.604 41.667 0.00 0.00 43.37 1.98
1770 1840 4.635765 TGTAACCATGCTTGTTGCTATCTC 59.364 41.667 0.00 0.00 43.37 2.75
1771 1841 3.354948 ACCATGCTTGTTGCTATCTCA 57.645 42.857 0.00 0.00 43.37 3.27
1772 1842 3.894759 ACCATGCTTGTTGCTATCTCAT 58.105 40.909 0.00 0.00 43.37 2.90
1773 1843 4.275810 ACCATGCTTGTTGCTATCTCATT 58.724 39.130 0.00 0.00 43.37 2.57
1774 1844 5.439721 ACCATGCTTGTTGCTATCTCATTA 58.560 37.500 0.00 0.00 43.37 1.90
1775 1845 6.066690 ACCATGCTTGTTGCTATCTCATTAT 58.933 36.000 0.00 0.00 43.37 1.28
1776 1846 6.016527 ACCATGCTTGTTGCTATCTCATTATG 60.017 38.462 0.00 0.00 43.37 1.90
1777 1847 6.379386 CATGCTTGTTGCTATCTCATTATGG 58.621 40.000 0.00 0.00 43.37 2.74
1778 1848 4.276678 TGCTTGTTGCTATCTCATTATGGC 59.723 41.667 0.00 0.00 43.37 4.40
1779 1849 4.320788 GCTTGTTGCTATCTCATTATGGCC 60.321 45.833 0.00 0.00 38.95 5.36
1780 1850 4.436113 TGTTGCTATCTCATTATGGCCA 57.564 40.909 8.56 8.56 32.75 5.36
1781 1851 4.790937 TGTTGCTATCTCATTATGGCCAA 58.209 39.130 10.96 0.00 32.75 4.52
1782 1852 5.199723 TGTTGCTATCTCATTATGGCCAAA 58.800 37.500 10.96 6.13 32.75 3.28
1783 1853 5.655974 TGTTGCTATCTCATTATGGCCAAAA 59.344 36.000 10.96 0.00 32.75 2.44
1784 1854 6.324512 TGTTGCTATCTCATTATGGCCAAAAT 59.675 34.615 10.96 0.00 32.75 1.82
1785 1855 6.982160 TGCTATCTCATTATGGCCAAAATT 57.018 33.333 10.96 0.00 32.75 1.82
1786 1856 8.359642 GTTGCTATCTCATTATGGCCAAAATTA 58.640 33.333 10.96 0.00 32.75 1.40
1787 1857 7.885297 TGCTATCTCATTATGGCCAAAATTAC 58.115 34.615 10.96 0.00 32.75 1.89
1788 1858 7.039784 TGCTATCTCATTATGGCCAAAATTACC 60.040 37.037 10.96 0.00 32.75 2.85
1789 1859 7.177392 GCTATCTCATTATGGCCAAAATTACCT 59.823 37.037 10.96 0.00 0.00 3.08
1790 1860 6.713762 TCTCATTATGGCCAAAATTACCTG 57.286 37.500 10.96 0.00 0.00 4.00
1791 1861 6.430864 TCTCATTATGGCCAAAATTACCTGA 58.569 36.000 10.96 2.65 0.00 3.86
1792 1862 7.068702 TCTCATTATGGCCAAAATTACCTGAT 58.931 34.615 10.96 0.00 0.00 2.90
1793 1863 7.564660 TCTCATTATGGCCAAAATTACCTGATT 59.435 33.333 10.96 0.00 0.00 2.57
1794 1864 8.088463 TCATTATGGCCAAAATTACCTGATTT 57.912 30.769 10.96 0.00 0.00 2.17
1795 1865 8.547173 TCATTATGGCCAAAATTACCTGATTTT 58.453 29.630 10.96 0.00 39.21 1.82
1807 1877 7.631717 ATTACCTGATTTTGAGAAACCTAGC 57.368 36.000 0.00 0.00 0.00 3.42
1808 1878 4.336280 ACCTGATTTTGAGAAACCTAGCC 58.664 43.478 0.00 0.00 0.00 3.93
1809 1879 4.043435 ACCTGATTTTGAGAAACCTAGCCT 59.957 41.667 0.00 0.00 0.00 4.58
1810 1880 5.012893 CCTGATTTTGAGAAACCTAGCCTT 58.987 41.667 0.00 0.00 0.00 4.35
1811 1881 5.124617 CCTGATTTTGAGAAACCTAGCCTTC 59.875 44.000 0.00 0.00 0.00 3.46
1812 1882 5.630121 TGATTTTGAGAAACCTAGCCTTCA 58.370 37.500 5.22 0.00 0.00 3.02
1813 1883 5.473504 TGATTTTGAGAAACCTAGCCTTCAC 59.526 40.000 5.22 0.51 0.00 3.18
1814 1884 4.706842 TTTGAGAAACCTAGCCTTCACT 57.293 40.909 5.22 0.00 0.00 3.41
1815 1885 3.685139 TGAGAAACCTAGCCTTCACTG 57.315 47.619 5.22 0.00 0.00 3.66
1816 1886 3.239449 TGAGAAACCTAGCCTTCACTGA 58.761 45.455 5.22 0.00 0.00 3.41
1817 1887 3.006967 TGAGAAACCTAGCCTTCACTGAC 59.993 47.826 5.22 0.00 0.00 3.51
1818 1888 3.243724 AGAAACCTAGCCTTCACTGACT 58.756 45.455 5.22 0.00 0.00 3.41
1819 1889 3.648545 AGAAACCTAGCCTTCACTGACTT 59.351 43.478 5.22 0.00 0.00 3.01
1820 1890 4.103311 AGAAACCTAGCCTTCACTGACTTT 59.897 41.667 5.22 0.00 0.00 2.66
1821 1891 5.307196 AGAAACCTAGCCTTCACTGACTTTA 59.693 40.000 5.22 0.00 0.00 1.85
1822 1892 5.562298 AACCTAGCCTTCACTGACTTTAA 57.438 39.130 0.00 0.00 0.00 1.52
1823 1893 5.562298 ACCTAGCCTTCACTGACTTTAAA 57.438 39.130 0.00 0.00 0.00 1.52
1824 1894 5.306394 ACCTAGCCTTCACTGACTTTAAAC 58.694 41.667 0.00 0.00 0.00 2.01
1825 1895 5.071923 ACCTAGCCTTCACTGACTTTAAACT 59.928 40.000 0.00 0.00 0.00 2.66
1826 1896 6.269307 ACCTAGCCTTCACTGACTTTAAACTA 59.731 38.462 0.00 0.00 0.00 2.24
1827 1897 7.038231 ACCTAGCCTTCACTGACTTTAAACTAT 60.038 37.037 0.00 0.00 0.00 2.12
1828 1898 7.492994 CCTAGCCTTCACTGACTTTAAACTATC 59.507 40.741 0.00 0.00 0.00 2.08
1829 1899 7.010339 AGCCTTCACTGACTTTAAACTATCT 57.990 36.000 0.00 0.00 0.00 1.98
1830 1900 7.100409 AGCCTTCACTGACTTTAAACTATCTC 58.900 38.462 0.00 0.00 0.00 2.75
1831 1901 6.314152 GCCTTCACTGACTTTAAACTATCTCC 59.686 42.308 0.00 0.00 0.00 3.71
1832 1902 7.616313 CCTTCACTGACTTTAAACTATCTCCT 58.384 38.462 0.00 0.00 0.00 3.69
1833 1903 7.547370 CCTTCACTGACTTTAAACTATCTCCTG 59.453 40.741 0.00 0.00 0.00 3.86
1834 1904 7.540474 TCACTGACTTTAAACTATCTCCTGT 57.460 36.000 0.00 0.00 0.00 4.00
1835 1905 7.963532 TCACTGACTTTAAACTATCTCCTGTT 58.036 34.615 0.00 0.00 0.00 3.16
1836 1906 8.088981 TCACTGACTTTAAACTATCTCCTGTTC 58.911 37.037 0.00 0.00 0.00 3.18
1837 1907 8.091449 CACTGACTTTAAACTATCTCCTGTTCT 58.909 37.037 0.00 0.00 0.00 3.01
1838 1908 9.310449 ACTGACTTTAAACTATCTCCTGTTCTA 57.690 33.333 0.00 0.00 0.00 2.10
1893 1963 8.400947 ACATACTGCAATGATCACTCAAATTAC 58.599 33.333 5.39 0.00 34.37 1.89
1953 2023 2.385013 AGTGTATCAATCGCAGCACA 57.615 45.000 0.00 0.00 0.00 4.57
1991 2061 6.463483 CATTGATGGATGTATTCTCTCGTG 57.537 41.667 0.00 0.00 0.00 4.35
1998 2068 6.504398 TGGATGTATTCTCTCGTGTTATGTC 58.496 40.000 0.00 0.00 0.00 3.06
2067 2137 6.983984 GTAAATTGGTTACTTGGTGGCTTTA 58.016 36.000 0.00 0.00 39.30 1.85
2073 2143 5.013287 TGGTTACTTGGTGGCTTTATCTGTA 59.987 40.000 0.00 0.00 0.00 2.74
2135 2205 0.391661 AAGCTCTGTATGGTGGCACG 60.392 55.000 12.17 0.00 0.00 5.34
2144 2214 3.053896 GGTGGCACGGGCAACTAC 61.054 66.667 18.52 7.09 43.86 2.73
2175 2245 1.152694 TTCCTTGCAGCAGCCAACT 60.153 52.632 0.00 0.00 41.13 3.16
2226 2296 0.824109 TCTCGATGTTGTAGGGGCAG 59.176 55.000 0.00 0.00 0.00 4.85
2493 2564 7.492344 CCAAATGCATGGGACTATTTTTAGTTC 59.508 37.037 11.34 0.00 36.79 3.01
2608 2683 7.914871 TCTGTTATGATGTTGTTTTCAGTTGTG 59.085 33.333 0.00 0.00 0.00 3.33
2983 3061 7.879677 TCTCAGTGTTCACTTTCATCACATATT 59.120 33.333 2.47 0.00 0.00 1.28
3363 3444 8.746922 TTTGTTTGCAAAAATGTTTAAATGCA 57.253 23.077 14.67 7.61 41.15 3.96
3364 3445 7.966157 TGTTTGCAAAAATGTTTAAATGCAG 57.034 28.000 14.67 0.00 43.72 4.41
3365 3446 7.755591 TGTTTGCAAAAATGTTTAAATGCAGA 58.244 26.923 14.67 5.48 43.72 4.26
3366 3447 8.239314 TGTTTGCAAAAATGTTTAAATGCAGAA 58.761 25.926 14.67 7.11 43.72 3.02
3367 3448 8.735837 GTTTGCAAAAATGTTTAAATGCAGAAG 58.264 29.630 14.67 0.00 43.72 2.85
3368 3449 7.551035 TGCAAAAATGTTTAAATGCAGAAGT 57.449 28.000 7.61 0.00 38.73 3.01
3369 3450 7.983307 TGCAAAAATGTTTAAATGCAGAAGTT 58.017 26.923 7.61 0.00 38.73 2.66
3370 3451 9.102757 TGCAAAAATGTTTAAATGCAGAAGTTA 57.897 25.926 7.61 0.00 38.73 2.24
3371 3452 9.368921 GCAAAAATGTTTAAATGCAGAAGTTAC 57.631 29.630 4.70 0.00 34.10 2.50
3372 3453 9.862585 CAAAAATGTTTAAATGCAGAAGTTACC 57.137 29.630 0.00 0.00 0.00 2.85
3373 3454 9.830975 AAAAATGTTTAAATGCAGAAGTTACCT 57.169 25.926 0.00 0.00 0.00 3.08
3374 3455 8.816640 AAATGTTTAAATGCAGAAGTTACCTG 57.183 30.769 0.00 0.00 34.88 4.00
3386 3467 7.615582 CAGAAGTTACCTGCATGAGATAAAA 57.384 36.000 0.00 0.00 0.00 1.52
3387 3468 8.218338 CAGAAGTTACCTGCATGAGATAAAAT 57.782 34.615 0.00 0.00 0.00 1.82
3388 3469 9.330063 CAGAAGTTACCTGCATGAGATAAAATA 57.670 33.333 0.00 0.00 0.00 1.40
3389 3470 9.553064 AGAAGTTACCTGCATGAGATAAAATAG 57.447 33.333 0.00 0.00 0.00 1.73
3390 3471 8.682936 AAGTTACCTGCATGAGATAAAATAGG 57.317 34.615 0.00 0.00 0.00 2.57
3391 3472 8.034313 AGTTACCTGCATGAGATAAAATAGGA 57.966 34.615 0.00 0.00 0.00 2.94
3392 3473 8.664079 AGTTACCTGCATGAGATAAAATAGGAT 58.336 33.333 0.00 0.00 0.00 3.24
3393 3474 9.289782 GTTACCTGCATGAGATAAAATAGGATT 57.710 33.333 0.00 0.00 0.00 3.01
3394 3475 9.866655 TTACCTGCATGAGATAAAATAGGATTT 57.133 29.630 0.00 0.00 0.00 2.17
3395 3476 8.773033 ACCTGCATGAGATAAAATAGGATTTT 57.227 30.769 0.00 2.96 0.00 1.82
3396 3477 9.205513 ACCTGCATGAGATAAAATAGGATTTTT 57.794 29.630 0.00 0.00 33.56 1.94
3445 3526 6.290294 ACCTGCATGAGCTAAAATTCATTT 57.710 33.333 0.00 0.00 42.74 2.32
3516 3597 4.695928 GGCAGTAGGAAGTCTTTTAGTTGG 59.304 45.833 0.00 0.00 0.00 3.77
3597 3761 7.756395 ATCTTAGAATTCCTGCCATATGTTG 57.244 36.000 0.65 0.00 0.00 3.33
3598 3762 6.899089 TCTTAGAATTCCTGCCATATGTTGA 58.101 36.000 0.65 0.00 0.00 3.18
3599 3763 7.520798 TCTTAGAATTCCTGCCATATGTTGAT 58.479 34.615 0.65 0.00 0.00 2.57
3600 3764 8.000709 TCTTAGAATTCCTGCCATATGTTGATT 58.999 33.333 0.65 0.00 0.00 2.57
3601 3765 6.401047 AGAATTCCTGCCATATGTTGATTG 57.599 37.500 0.65 0.00 0.00 2.67
3602 3766 6.131264 AGAATTCCTGCCATATGTTGATTGA 58.869 36.000 0.65 0.00 0.00 2.57
3603 3767 6.264744 AGAATTCCTGCCATATGTTGATTGAG 59.735 38.462 0.65 0.00 0.00 3.02
3604 3768 4.508551 TCCTGCCATATGTTGATTGAGT 57.491 40.909 1.24 0.00 0.00 3.41
3605 3769 4.858850 TCCTGCCATATGTTGATTGAGTT 58.141 39.130 1.24 0.00 0.00 3.01
3606 3770 4.641541 TCCTGCCATATGTTGATTGAGTTG 59.358 41.667 1.24 0.00 0.00 3.16
3607 3771 4.202080 CCTGCCATATGTTGATTGAGTTGG 60.202 45.833 1.24 0.00 0.00 3.77
3608 3772 4.598022 TGCCATATGTTGATTGAGTTGGA 58.402 39.130 1.24 0.00 0.00 3.53
3609 3773 5.015515 TGCCATATGTTGATTGAGTTGGAA 58.984 37.500 1.24 0.00 0.00 3.53
3610 3774 5.105797 TGCCATATGTTGATTGAGTTGGAAC 60.106 40.000 1.24 0.00 0.00 3.62
3611 3775 5.126061 GCCATATGTTGATTGAGTTGGAACT 59.874 40.000 1.24 0.00 43.16 3.01
3612 3776 6.350445 GCCATATGTTGATTGAGTTGGAACTT 60.350 38.462 1.24 0.00 39.88 2.66
3613 3777 7.148086 GCCATATGTTGATTGAGTTGGAACTTA 60.148 37.037 1.24 0.00 39.88 2.24
3614 3778 8.906867 CCATATGTTGATTGAGTTGGAACTTAT 58.093 33.333 1.24 0.00 39.88 1.73
3617 3781 7.815840 TGTTGATTGAGTTGGAACTTATTCA 57.184 32.000 5.32 5.32 39.88 2.57
3618 3782 8.408043 TGTTGATTGAGTTGGAACTTATTCAT 57.592 30.769 8.73 0.00 39.88 2.57
3619 3783 8.859090 TGTTGATTGAGTTGGAACTTATTCATT 58.141 29.630 8.73 0.00 39.88 2.57
3620 3784 9.696917 GTTGATTGAGTTGGAACTTATTCATTT 57.303 29.630 8.73 0.00 39.88 2.32
3621 3785 9.695526 TTGATTGAGTTGGAACTTATTCATTTG 57.304 29.630 8.73 0.00 39.88 2.32
3622 3786 9.076781 TGATTGAGTTGGAACTTATTCATTTGA 57.923 29.630 5.32 0.00 39.88 2.69
3623 3787 9.346725 GATTGAGTTGGAACTTATTCATTTGAC 57.653 33.333 0.00 0.00 39.88 3.18
3624 3788 7.815840 TGAGTTGGAACTTATTCATTTGACA 57.184 32.000 0.00 0.00 39.88 3.58
3625 3789 8.231692 TGAGTTGGAACTTATTCATTTGACAA 57.768 30.769 0.00 0.00 39.88 3.18
3626 3790 8.352201 TGAGTTGGAACTTATTCATTTGACAAG 58.648 33.333 0.00 1.44 39.88 3.16
3627 3791 7.147976 AGTTGGAACTTATTCATTTGACAAGC 58.852 34.615 0.00 0.00 35.21 4.01
3628 3792 6.899393 TGGAACTTATTCATTTGACAAGCT 57.101 33.333 0.00 0.00 36.46 3.74
3629 3793 6.913170 TGGAACTTATTCATTTGACAAGCTC 58.087 36.000 0.00 0.94 36.46 4.09
3630 3794 6.716628 TGGAACTTATTCATTTGACAAGCTCT 59.283 34.615 0.00 0.00 36.46 4.09
3631 3795 7.025963 GGAACTTATTCATTTGACAAGCTCTG 58.974 38.462 0.00 0.00 36.46 3.35
3632 3796 7.308830 GGAACTTATTCATTTGACAAGCTCTGT 60.309 37.037 1.82 1.82 37.51 3.41
3633 3797 7.748241 GAACTTATTCATTTGACAAGCTCTGTC 59.252 37.037 17.11 17.11 43.33 3.51
3640 3804 2.440539 GACAAGCTCTGTCGGAGAAA 57.559 50.000 13.17 0.00 44.95 2.52
3641 3805 2.755650 GACAAGCTCTGTCGGAGAAAA 58.244 47.619 13.17 0.00 44.95 2.29
3642 3806 2.476997 GACAAGCTCTGTCGGAGAAAAC 59.523 50.000 13.17 0.00 44.95 2.43
3643 3807 2.103263 ACAAGCTCTGTCGGAGAAAACT 59.897 45.455 13.17 0.00 44.45 2.66
3644 3808 2.734079 CAAGCTCTGTCGGAGAAAACTC 59.266 50.000 13.17 0.00 44.45 3.01
3645 3809 2.243810 AGCTCTGTCGGAGAAAACTCT 58.756 47.619 13.17 0.00 44.45 3.24
3646 3810 3.422796 AGCTCTGTCGGAGAAAACTCTA 58.577 45.455 13.17 0.00 44.45 2.43
3647 3811 3.827302 AGCTCTGTCGGAGAAAACTCTAA 59.173 43.478 13.17 0.00 44.45 2.10
3648 3812 3.921630 GCTCTGTCGGAGAAAACTCTAAC 59.078 47.826 13.17 0.00 44.45 2.34
3649 3813 4.558898 GCTCTGTCGGAGAAAACTCTAACA 60.559 45.833 13.17 0.00 44.45 2.41
3650 3814 5.122512 TCTGTCGGAGAAAACTCTAACAG 57.877 43.478 17.47 17.47 39.69 3.16
3651 3815 4.022242 TCTGTCGGAGAAAACTCTAACAGG 60.022 45.833 20.35 10.58 39.69 4.00
3652 3816 2.994578 GTCGGAGAAAACTCTAACAGGC 59.005 50.000 0.00 0.00 39.69 4.85
3653 3817 2.897969 TCGGAGAAAACTCTAACAGGCT 59.102 45.455 0.00 0.00 0.00 4.58
3654 3818 3.323979 TCGGAGAAAACTCTAACAGGCTT 59.676 43.478 0.00 0.00 0.00 4.35
3655 3819 4.065789 CGGAGAAAACTCTAACAGGCTTT 58.934 43.478 0.00 0.00 0.00 3.51
3656 3820 5.011329 TCGGAGAAAACTCTAACAGGCTTTA 59.989 40.000 0.00 0.00 0.00 1.85
3657 3821 5.875359 CGGAGAAAACTCTAACAGGCTTTAT 59.125 40.000 0.00 0.00 0.00 1.40
3658 3822 6.036191 CGGAGAAAACTCTAACAGGCTTTATC 59.964 42.308 0.00 0.00 0.00 1.75
3659 3823 7.106890 GGAGAAAACTCTAACAGGCTTTATCT 58.893 38.462 0.00 0.00 0.00 1.98
3660 3824 7.608376 GGAGAAAACTCTAACAGGCTTTATCTT 59.392 37.037 0.00 0.00 0.00 2.40
3661 3825 9.654663 GAGAAAACTCTAACAGGCTTTATCTTA 57.345 33.333 0.00 0.00 0.00 2.10
3662 3826 9.660180 AGAAAACTCTAACAGGCTTTATCTTAG 57.340 33.333 0.00 0.00 0.00 2.18
3663 3827 9.654663 GAAAACTCTAACAGGCTTTATCTTAGA 57.345 33.333 0.00 0.00 0.00 2.10
3667 3831 9.825109 ACTCTAACAGGCTTTATCTTAGAATTC 57.175 33.333 0.00 0.00 0.00 2.17
3668 3832 9.267084 CTCTAACAGGCTTTATCTTAGAATTCC 57.733 37.037 0.65 0.00 0.00 3.01
3669 3833 8.993424 TCTAACAGGCTTTATCTTAGAATTCCT 58.007 33.333 0.65 0.00 0.00 3.36
3670 3834 7.872113 AACAGGCTTTATCTTAGAATTCCTG 57.128 36.000 0.65 13.60 42.96 3.86
3671 3835 5.825151 ACAGGCTTTATCTTAGAATTCCTGC 59.175 40.000 14.51 4.09 41.51 4.85
3672 3836 5.240403 CAGGCTTTATCTTAGAATTCCTGCC 59.760 44.000 0.65 0.00 33.21 4.85
3673 3837 5.103940 AGGCTTTATCTTAGAATTCCTGCCA 60.104 40.000 0.65 0.00 38.07 4.92
3674 3838 5.772169 GGCTTTATCTTAGAATTCCTGCCAT 59.228 40.000 0.65 0.00 35.94 4.40
3675 3839 6.942576 GGCTTTATCTTAGAATTCCTGCCATA 59.057 38.462 0.65 0.00 35.94 2.74
3676 3840 7.613411 GGCTTTATCTTAGAATTCCTGCCATAT 59.387 37.037 0.65 0.00 35.94 1.78
3677 3841 8.457261 GCTTTATCTTAGAATTCCTGCCATATG 58.543 37.037 0.65 0.00 0.00 1.78
3678 3842 9.512588 CTTTATCTTAGAATTCCTGCCATATGT 57.487 33.333 0.65 0.00 0.00 2.29
3679 3843 9.866655 TTTATCTTAGAATTCCTGCCATATGTT 57.133 29.630 0.65 0.00 0.00 2.71
3968 4133 6.467677 TCCAAAAGGTATCTCTATAGCATGC 58.532 40.000 10.51 10.51 38.33 4.06
4146 4311 4.156739 CCCTTTGACATCTAACTGCCTTTC 59.843 45.833 0.00 0.00 0.00 2.62
4166 4344 1.002868 GATCCAGTGCAGTGGCTGT 60.003 57.895 32.24 21.10 41.91 4.40
4169 4347 2.593725 CAGTGCAGTGGCTGTGCT 60.594 61.111 14.08 0.00 41.78 4.40
4185 4363 1.743252 GCTGCTGAAGGTTCCCTCG 60.743 63.158 0.00 0.00 30.89 4.63
4217 4418 4.065789 AGCTTTCCTTTACAAGAGAACGG 58.934 43.478 0.00 0.00 0.00 4.44
4258 4459 0.696501 GTGGGTTAGGAAGAAGCCCA 59.303 55.000 0.00 0.00 44.79 5.36
4287 4488 9.556030 GAACAATCTTTAATTTCCTTTCTACCG 57.444 33.333 0.00 0.00 0.00 4.02
4288 4489 8.857694 ACAATCTTTAATTTCCTTTCTACCGA 57.142 30.769 0.00 0.00 0.00 4.69
4370 4571 3.904136 ATTTTCGGTTGAAGTGCTCTG 57.096 42.857 0.00 0.00 35.06 3.35
4389 4590 4.566004 TCTGTTTTCCTCGTATTCAGTGG 58.434 43.478 0.00 0.00 0.00 4.00
4399 4600 5.692204 CCTCGTATTCAGTGGTGTATGAATC 59.308 44.000 3.84 0.00 43.34 2.52
4420 4621 5.883328 TCGTGAAATAATACGATGACAGC 57.117 39.130 0.00 0.00 43.54 4.40
4451 4652 1.937899 GCATTTTCCCATGAGCATTGC 59.062 47.619 0.00 0.00 0.00 3.56
4454 4655 4.741235 GCATTTTCCCATGAGCATTGCATA 60.741 41.667 11.91 0.00 0.00 3.14
4554 4867 1.218196 ACCATAGTGATCGGGACTCCT 59.782 52.381 0.00 0.00 0.00 3.69
4556 4869 2.311463 CATAGTGATCGGGACTCCTGT 58.689 52.381 3.69 0.00 0.00 4.00
4562 4875 3.322254 GTGATCGGGACTCCTGTAATGAT 59.678 47.826 3.69 0.00 0.00 2.45
4580 4894 6.757897 AATGATGCCGACTTCATCTAAAAA 57.242 33.333 0.66 0.00 39.16 1.94
4584 4898 2.683362 GCCGACTTCATCTAAAAAGGGG 59.317 50.000 0.00 0.00 0.00 4.79
4587 4901 5.007682 CCGACTTCATCTAAAAAGGGGAAA 58.992 41.667 0.00 0.00 0.00 3.13
4588 4902 5.123979 CCGACTTCATCTAAAAAGGGGAAAG 59.876 44.000 0.00 0.00 0.00 2.62
4591 4905 7.389607 CGACTTCATCTAAAAAGGGGAAAGTTA 59.610 37.037 0.00 0.00 0.00 2.24
4592 4906 8.637196 ACTTCATCTAAAAAGGGGAAAGTTAG 57.363 34.615 0.00 0.00 0.00 2.34
4593 4907 8.225416 ACTTCATCTAAAAAGGGGAAAGTTAGT 58.775 33.333 0.00 0.00 0.00 2.24
4594 4908 8.631480 TTCATCTAAAAAGGGGAAAGTTAGTC 57.369 34.615 0.00 0.00 0.00 2.59
4595 4909 7.985589 TCATCTAAAAAGGGGAAAGTTAGTCT 58.014 34.615 0.00 0.00 0.00 3.24
4596 4910 7.883311 TCATCTAAAAAGGGGAAAGTTAGTCTG 59.117 37.037 0.00 0.00 0.00 3.51
4597 4911 6.002082 TCTAAAAAGGGGAAAGTTAGTCTGC 58.998 40.000 0.00 0.00 0.00 4.26
4598 4912 4.455070 AAAAGGGGAAAGTTAGTCTGCT 57.545 40.909 0.00 0.00 0.00 4.24
4657 4971 2.328099 CGGTTCTCTGCAACTGGCC 61.328 63.158 0.00 0.00 43.89 5.36
4950 5269 1.592223 GACCCCTCAAGTCACTCGG 59.408 63.158 0.00 0.00 34.27 4.63
4975 5299 0.829182 CCAAGCAACCCAAAGCCTCT 60.829 55.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 268 0.179108 ATGCCTCTCGCGGAAGTAAC 60.179 55.000 6.13 0.00 42.08 2.50
364 397 2.664851 CAACCGTGCCTCTTGCGA 60.665 61.111 0.00 0.00 45.60 5.10
567 612 5.227908 GTGGAAGTAAAATCGTGACTCTCA 58.772 41.667 0.00 0.00 0.00 3.27
578 623 3.335579 GTGCCTCTCGTGGAAGTAAAAT 58.664 45.455 0.00 0.00 0.00 1.82
773 822 0.591170 CAACCGTGCGTCCAAATCTT 59.409 50.000 0.00 0.00 0.00 2.40
792 841 6.625873 AAAAACACTTCATCTTCTCAGGTC 57.374 37.500 0.00 0.00 0.00 3.85
819 868 9.070149 GTCGAAATCACTAATTAAGTACTCGTT 57.930 33.333 0.00 0.00 35.76 3.85
820 869 8.239314 TGTCGAAATCACTAATTAAGTACTCGT 58.761 33.333 0.00 0.00 35.76 4.18
821 870 8.610855 TGTCGAAATCACTAATTAAGTACTCG 57.389 34.615 0.00 0.00 35.76 4.18
823 872 9.924650 ACTTGTCGAAATCACTAATTAAGTACT 57.075 29.630 0.00 0.00 35.76 2.73
826 875 8.870879 GCTACTTGTCGAAATCACTAATTAAGT 58.129 33.333 0.00 0.00 39.81 2.24
827 876 9.088512 AGCTACTTGTCGAAATCACTAATTAAG 57.911 33.333 0.00 0.00 0.00 1.85
828 877 8.997621 AGCTACTTGTCGAAATCACTAATTAA 57.002 30.769 0.00 0.00 0.00 1.40
829 878 8.467598 AGAGCTACTTGTCGAAATCACTAATTA 58.532 33.333 0.00 0.00 0.00 1.40
830 879 7.276658 CAGAGCTACTTGTCGAAATCACTAATT 59.723 37.037 0.00 0.00 0.00 1.40
831 880 6.754209 CAGAGCTACTTGTCGAAATCACTAAT 59.246 38.462 0.00 0.00 0.00 1.73
832 881 6.072119 TCAGAGCTACTTGTCGAAATCACTAA 60.072 38.462 0.00 0.00 0.00 2.24
833 882 5.414765 TCAGAGCTACTTGTCGAAATCACTA 59.585 40.000 0.00 0.00 0.00 2.74
834 883 4.218635 TCAGAGCTACTTGTCGAAATCACT 59.781 41.667 0.00 0.00 0.00 3.41
835 884 4.324936 GTCAGAGCTACTTGTCGAAATCAC 59.675 45.833 0.00 0.00 0.00 3.06
836 885 4.022329 TGTCAGAGCTACTTGTCGAAATCA 60.022 41.667 0.00 0.00 0.00 2.57
837 886 4.486090 TGTCAGAGCTACTTGTCGAAATC 58.514 43.478 0.00 0.00 0.00 2.17
838 887 4.521130 TGTCAGAGCTACTTGTCGAAAT 57.479 40.909 0.00 0.00 0.00 2.17
839 888 4.316205 TTGTCAGAGCTACTTGTCGAAA 57.684 40.909 0.00 0.00 0.00 3.46
840 889 4.299155 CTTTGTCAGAGCTACTTGTCGAA 58.701 43.478 0.00 0.00 0.00 3.71
841 890 3.857383 GCTTTGTCAGAGCTACTTGTCGA 60.857 47.826 8.09 0.00 37.18 4.20
842 891 2.410053 GCTTTGTCAGAGCTACTTGTCG 59.590 50.000 8.09 0.00 37.18 4.35
843 892 2.739379 GGCTTTGTCAGAGCTACTTGTC 59.261 50.000 14.47 0.00 40.01 3.18
919 971 0.107214 CCACCACAACACCACACTCT 60.107 55.000 0.00 0.00 0.00 3.24
924 976 1.140804 GCAACCACCACAACACCAC 59.859 57.895 0.00 0.00 0.00 4.16
925 977 2.055042 GGCAACCACCACAACACCA 61.055 57.895 0.00 0.00 0.00 4.17
926 978 2.811799 GGCAACCACCACAACACC 59.188 61.111 0.00 0.00 0.00 4.16
1134 1186 4.132441 ACGGCCGCGGATTCGTTA 62.132 61.111 33.48 0.00 38.89 3.18
1216 1269 1.120530 GGGCTACCGAAATCTGAGGA 58.879 55.000 0.00 0.00 0.00 3.71
1336 1393 3.619233 AACCCGAAGAAAAATCACACG 57.381 42.857 0.00 0.00 0.00 4.49
1352 1409 3.609879 CGTCAAACCCAACGAATTAACCC 60.610 47.826 0.00 0.00 41.29 4.11
1357 1414 1.268845 GCACGTCAAACCCAACGAATT 60.269 47.619 1.52 0.00 41.29 2.17
1380 1437 2.477825 CCTCGACACCTGCATCATAAG 58.522 52.381 0.00 0.00 0.00 1.73
1406 1463 1.153449 CTTATCCGCCTCCGTTGCA 60.153 57.895 0.00 0.00 0.00 4.08
1556 1617 1.476891 GACCAGACCGTCAGAGCAATA 59.523 52.381 0.40 0.00 32.74 1.90
1560 1621 0.667792 GTTGACCAGACCGTCAGAGC 60.668 60.000 0.40 0.00 43.39 4.09
1584 1645 3.459227 TGCATGATTCTTATGGTCCCTCA 59.541 43.478 0.00 0.00 0.00 3.86
1585 1646 4.070716 CTGCATGATTCTTATGGTCCCTC 58.929 47.826 0.00 0.00 0.00 4.30
1632 1693 4.119136 AGAAAATGTTGGTTTCTTTGCGG 58.881 39.130 0.00 0.00 41.47 5.69
1645 1706 5.628797 ATGGAACCCAACAAGAAAATGTT 57.371 34.783 0.00 0.00 44.08 2.71
1666 1728 8.587608 CAGGTAATTTTGGCCATAATGACATAT 58.412 33.333 27.99 15.95 0.00 1.78
1667 1729 7.782168 TCAGGTAATTTTGGCCATAATGACATA 59.218 33.333 27.99 15.36 0.00 2.29
1687 1757 5.250774 AGGCTAGGTTTCTCAAAATCAGGTA 59.749 40.000 0.00 0.00 0.00 3.08
1688 1758 4.043435 AGGCTAGGTTTCTCAAAATCAGGT 59.957 41.667 0.00 0.00 0.00 4.00
1690 1760 5.707298 TGAAGGCTAGGTTTCTCAAAATCAG 59.293 40.000 0.00 0.00 0.00 2.90
1695 1765 4.102524 TCAGTGAAGGCTAGGTTTCTCAAA 59.897 41.667 0.00 0.00 0.00 2.69
1705 1775 9.606631 AGATAGTTTAAAATCAGTGAAGGCTAG 57.393 33.333 0.00 0.00 0.00 3.42
1713 1783 9.442047 AGAACAGGAGATAGTTTAAAATCAGTG 57.558 33.333 0.00 0.00 0.00 3.66
1730 1800 4.935808 GGTTACACACCAATAGAACAGGAG 59.064 45.833 0.00 0.00 46.42 3.69
1743 1813 2.862140 GCAACAAGCATGGTTACACACC 60.862 50.000 10.31 0.00 44.61 4.16
1744 1814 2.393764 GCAACAAGCATGGTTACACAC 58.606 47.619 10.31 0.00 44.79 3.82
1745 1815 2.791383 GCAACAAGCATGGTTACACA 57.209 45.000 10.31 0.00 44.79 3.72
1756 1826 4.320788 GGCCATAATGAGATAGCAACAAGC 60.321 45.833 0.00 0.00 46.19 4.01
1757 1827 4.823442 TGGCCATAATGAGATAGCAACAAG 59.177 41.667 0.00 0.00 0.00 3.16
1758 1828 4.790937 TGGCCATAATGAGATAGCAACAA 58.209 39.130 0.00 0.00 0.00 2.83
1759 1829 4.436113 TGGCCATAATGAGATAGCAACA 57.564 40.909 0.00 0.00 0.00 3.33
1760 1830 5.772825 TTTGGCCATAATGAGATAGCAAC 57.227 39.130 6.09 0.00 0.00 4.17
1761 1831 6.982160 ATTTTGGCCATAATGAGATAGCAA 57.018 33.333 19.23 0.00 0.00 3.91
1762 1832 6.982160 AATTTTGGCCATAATGAGATAGCA 57.018 33.333 20.41 0.00 0.00 3.49
1763 1833 7.177392 AGGTAATTTTGGCCATAATGAGATAGC 59.823 37.037 20.41 17.00 0.00 2.97
1764 1834 8.517878 CAGGTAATTTTGGCCATAATGAGATAG 58.482 37.037 20.41 7.43 0.00 2.08
1765 1835 8.224025 TCAGGTAATTTTGGCCATAATGAGATA 58.776 33.333 20.41 7.84 0.00 1.98
1766 1836 7.068702 TCAGGTAATTTTGGCCATAATGAGAT 58.931 34.615 20.41 8.75 0.00 2.75
1767 1837 6.430864 TCAGGTAATTTTGGCCATAATGAGA 58.569 36.000 20.41 11.76 0.00 3.27
1768 1838 6.713762 TCAGGTAATTTTGGCCATAATGAG 57.286 37.500 20.41 9.98 0.00 2.90
1769 1839 7.673641 AATCAGGTAATTTTGGCCATAATGA 57.326 32.000 20.41 14.97 0.00 2.57
1770 1840 8.614346 CAAAATCAGGTAATTTTGGCCATAATG 58.386 33.333 20.41 10.47 46.03 1.90
1771 1841 8.735692 CAAAATCAGGTAATTTTGGCCATAAT 57.264 30.769 14.94 14.94 46.03 1.28
1781 1851 8.523658 GCTAGGTTTCTCAAAATCAGGTAATTT 58.476 33.333 0.00 0.00 0.00 1.82
1782 1852 7.122799 GGCTAGGTTTCTCAAAATCAGGTAATT 59.877 37.037 0.00 0.00 0.00 1.40
1783 1853 6.603599 GGCTAGGTTTCTCAAAATCAGGTAAT 59.396 38.462 0.00 0.00 0.00 1.89
1784 1854 5.944007 GGCTAGGTTTCTCAAAATCAGGTAA 59.056 40.000 0.00 0.00 0.00 2.85
1785 1855 5.250774 AGGCTAGGTTTCTCAAAATCAGGTA 59.749 40.000 0.00 0.00 0.00 3.08
1786 1856 4.043435 AGGCTAGGTTTCTCAAAATCAGGT 59.957 41.667 0.00 0.00 0.00 4.00
1787 1857 4.593956 AGGCTAGGTTTCTCAAAATCAGG 58.406 43.478 0.00 0.00 0.00 3.86
1788 1858 5.707298 TGAAGGCTAGGTTTCTCAAAATCAG 59.293 40.000 0.00 0.00 0.00 2.90
1789 1859 5.473504 GTGAAGGCTAGGTTTCTCAAAATCA 59.526 40.000 0.00 0.00 0.00 2.57
1790 1860 5.707764 AGTGAAGGCTAGGTTTCTCAAAATC 59.292 40.000 0.00 0.00 0.00 2.17
1791 1861 5.474876 CAGTGAAGGCTAGGTTTCTCAAAAT 59.525 40.000 0.00 0.00 0.00 1.82
1792 1862 4.821805 CAGTGAAGGCTAGGTTTCTCAAAA 59.178 41.667 0.00 0.00 0.00 2.44
1793 1863 4.102524 TCAGTGAAGGCTAGGTTTCTCAAA 59.897 41.667 0.00 0.00 0.00 2.69
1794 1864 3.646162 TCAGTGAAGGCTAGGTTTCTCAA 59.354 43.478 0.00 0.00 0.00 3.02
1795 1865 3.006967 GTCAGTGAAGGCTAGGTTTCTCA 59.993 47.826 0.00 0.00 0.00 3.27
1796 1866 3.259625 AGTCAGTGAAGGCTAGGTTTCTC 59.740 47.826 0.00 0.00 0.00 2.87
1797 1867 3.243724 AGTCAGTGAAGGCTAGGTTTCT 58.756 45.455 0.00 0.00 0.00 2.52
1798 1868 3.686916 AGTCAGTGAAGGCTAGGTTTC 57.313 47.619 0.00 0.00 0.00 2.78
1799 1869 4.439253 AAAGTCAGTGAAGGCTAGGTTT 57.561 40.909 0.00 0.00 0.00 3.27
1800 1870 5.562298 TTAAAGTCAGTGAAGGCTAGGTT 57.438 39.130 0.00 0.00 0.00 3.50
1801 1871 5.071923 AGTTTAAAGTCAGTGAAGGCTAGGT 59.928 40.000 0.00 0.00 0.00 3.08
1802 1872 5.552178 AGTTTAAAGTCAGTGAAGGCTAGG 58.448 41.667 0.00 0.00 0.00 3.02
1803 1873 8.254508 AGATAGTTTAAAGTCAGTGAAGGCTAG 58.745 37.037 0.00 0.00 0.00 3.42
1804 1874 8.135382 AGATAGTTTAAAGTCAGTGAAGGCTA 57.865 34.615 0.00 0.00 0.00 3.93
1805 1875 7.010339 AGATAGTTTAAAGTCAGTGAAGGCT 57.990 36.000 0.00 0.00 0.00 4.58
1806 1876 6.314152 GGAGATAGTTTAAAGTCAGTGAAGGC 59.686 42.308 0.00 0.00 0.00 4.35
1807 1877 7.547370 CAGGAGATAGTTTAAAGTCAGTGAAGG 59.453 40.741 0.00 0.00 0.00 3.46
1808 1878 8.091449 ACAGGAGATAGTTTAAAGTCAGTGAAG 58.909 37.037 0.00 0.00 0.00 3.02
1809 1879 7.963532 ACAGGAGATAGTTTAAAGTCAGTGAA 58.036 34.615 0.00 0.00 0.00 3.18
1810 1880 7.540474 ACAGGAGATAGTTTAAAGTCAGTGA 57.460 36.000 0.00 0.00 0.00 3.41
1811 1881 8.091449 AGAACAGGAGATAGTTTAAAGTCAGTG 58.909 37.037 0.00 0.00 0.00 3.66
1812 1882 8.196378 AGAACAGGAGATAGTTTAAAGTCAGT 57.804 34.615 0.00 0.00 0.00 3.41
1816 1886 9.892130 CCAATAGAACAGGAGATAGTTTAAAGT 57.108 33.333 0.37 0.37 0.00 2.66
1829 1899 5.338632 TGGTTACTCTCCAATAGAACAGGA 58.661 41.667 0.00 0.00 32.46 3.86
1830 1900 5.677319 TGGTTACTCTCCAATAGAACAGG 57.323 43.478 0.00 0.00 32.46 4.00
1831 1901 5.525378 GCATGGTTACTCTCCAATAGAACAG 59.475 44.000 0.00 0.00 38.52 3.16
1832 1902 5.189736 AGCATGGTTACTCTCCAATAGAACA 59.810 40.000 0.00 0.00 38.52 3.18
1833 1903 5.675538 AGCATGGTTACTCTCCAATAGAAC 58.324 41.667 0.00 0.00 38.52 3.01
1834 1904 5.957771 AGCATGGTTACTCTCCAATAGAA 57.042 39.130 0.00 0.00 38.52 2.10
1835 1905 5.189736 ACAAGCATGGTTACTCTCCAATAGA 59.810 40.000 10.31 0.00 38.52 1.98
1836 1906 5.431765 ACAAGCATGGTTACTCTCCAATAG 58.568 41.667 10.31 0.00 38.52 1.73
1837 1907 5.435686 ACAAGCATGGTTACTCTCCAATA 57.564 39.130 10.31 0.00 38.52 1.90
1838 1908 4.307032 ACAAGCATGGTTACTCTCCAAT 57.693 40.909 10.31 0.00 38.52 3.16
1893 1963 6.551385 ACAATCTGTCTTTGCTGAGTAAAG 57.449 37.500 15.60 15.60 36.76 1.85
2026 2096 7.566858 CAATTTACTGAATTGCACAAGTACC 57.433 36.000 0.00 0.00 45.72 3.34
2067 2137 7.280356 ACACAAGTAAGGACAAAACTACAGAT 58.720 34.615 0.00 0.00 0.00 2.90
2073 2143 8.621286 CATAAGAACACAAGTAAGGACAAAACT 58.379 33.333 0.00 0.00 0.00 2.66
2135 2205 3.795638 GCACTAGCGTAGTTGCCC 58.204 61.111 0.00 0.00 36.76 5.36
2175 2245 7.978975 AGATTCAACTTTTTCCAACGAATTTGA 59.021 29.630 0.00 0.00 37.39 2.69
2226 2296 2.426842 AACATAGGGCTCTTCTTGGC 57.573 50.000 0.00 0.00 0.00 4.52
2504 2576 3.252400 CTGTTGACAAAGCAAGCAACAA 58.748 40.909 0.00 0.00 46.66 2.83
2983 3061 4.808558 GCACATGCATCAAACTTCCTTTA 58.191 39.130 0.00 0.00 41.59 1.85
3367 3448 8.854614 ATCCTATTTTATCTCATGCAGGTAAC 57.145 34.615 0.00 0.00 26.28 2.50
3368 3449 9.866655 AAATCCTATTTTATCTCATGCAGGTAA 57.133 29.630 0.00 0.00 0.00 2.85
3369 3450 9.866655 AAAATCCTATTTTATCTCATGCAGGTA 57.133 29.630 0.00 0.00 0.00 3.08
3370 3451 8.773033 AAAATCCTATTTTATCTCATGCAGGT 57.227 30.769 0.00 0.00 0.00 4.00
3516 3597 5.668558 AGTACAAACGTTCCAACTCAATC 57.331 39.130 0.00 0.00 0.00 2.67
3597 3761 9.346725 GTCAAATGAATAAGTTCCAACTCAATC 57.653 33.333 0.00 0.00 38.57 2.67
3598 3762 8.859090 TGTCAAATGAATAAGTTCCAACTCAAT 58.141 29.630 0.00 0.00 38.57 2.57
3599 3763 8.231692 TGTCAAATGAATAAGTTCCAACTCAA 57.768 30.769 0.00 0.00 38.57 3.02
3600 3764 7.815840 TGTCAAATGAATAAGTTCCAACTCA 57.184 32.000 0.00 0.00 38.57 3.41
3601 3765 7.327032 GCTTGTCAAATGAATAAGTTCCAACTC 59.673 37.037 9.19 0.00 38.57 3.01
3602 3766 7.014615 AGCTTGTCAAATGAATAAGTTCCAACT 59.985 33.333 9.19 0.00 42.04 3.16
3603 3767 7.147976 AGCTTGTCAAATGAATAAGTTCCAAC 58.852 34.615 9.19 0.00 33.26 3.77
3604 3768 7.231317 AGAGCTTGTCAAATGAATAAGTTCCAA 59.769 33.333 15.42 2.27 34.45 3.53
3605 3769 6.716628 AGAGCTTGTCAAATGAATAAGTTCCA 59.283 34.615 15.42 0.00 34.45 3.53
3606 3770 7.025963 CAGAGCTTGTCAAATGAATAAGTTCC 58.974 38.462 15.42 5.94 34.45 3.62
3607 3771 7.588512 ACAGAGCTTGTCAAATGAATAAGTTC 58.411 34.615 13.07 13.07 33.87 3.01
3608 3772 7.516198 ACAGAGCTTGTCAAATGAATAAGTT 57.484 32.000 0.00 4.89 33.87 2.66
3620 3784 7.957550 GAGTTTTCTCCGACAGAGCTTGTCA 62.958 48.000 21.15 8.43 45.96 3.58
3621 3785 5.609767 GAGTTTTCTCCGACAGAGCTTGTC 61.610 50.000 15.08 15.08 43.52 3.18
3622 3786 2.103263 AGTTTTCTCCGACAGAGCTTGT 59.897 45.455 0.00 0.00 42.90 3.16
3623 3787 2.734079 GAGTTTTCTCCGACAGAGCTTG 59.266 50.000 0.00 0.00 42.90 4.01
3624 3788 3.033368 GAGTTTTCTCCGACAGAGCTT 57.967 47.619 0.00 0.00 42.90 3.74
3625 3789 2.734276 GAGTTTTCTCCGACAGAGCT 57.266 50.000 0.00 0.00 42.90 4.09
3635 3799 8.554835 AAGATAAAGCCTGTTAGAGTTTTCTC 57.445 34.615 0.00 0.00 46.50 2.87
3636 3800 9.660180 CTAAGATAAAGCCTGTTAGAGTTTTCT 57.340 33.333 0.00 0.00 37.46 2.52
3637 3801 9.654663 TCTAAGATAAAGCCTGTTAGAGTTTTC 57.345 33.333 0.00 0.00 0.00 2.29
3641 3805 9.825109 GAATTCTAAGATAAAGCCTGTTAGAGT 57.175 33.333 0.00 0.00 32.69 3.24
3642 3806 9.267084 GGAATTCTAAGATAAAGCCTGTTAGAG 57.733 37.037 5.23 0.00 32.69 2.43
3643 3807 8.993424 AGGAATTCTAAGATAAAGCCTGTTAGA 58.007 33.333 5.23 0.00 0.00 2.10
3644 3808 9.050601 CAGGAATTCTAAGATAAAGCCTGTTAG 57.949 37.037 5.23 0.00 36.51 2.34
3645 3809 7.499232 GCAGGAATTCTAAGATAAAGCCTGTTA 59.501 37.037 5.23 0.00 41.73 2.41
3646 3810 6.319911 GCAGGAATTCTAAGATAAAGCCTGTT 59.680 38.462 5.23 0.00 41.73 3.16
3647 3811 5.825151 GCAGGAATTCTAAGATAAAGCCTGT 59.175 40.000 5.23 0.00 41.73 4.00
3648 3812 5.240403 GGCAGGAATTCTAAGATAAAGCCTG 59.760 44.000 5.23 0.00 42.39 4.85
3649 3813 5.103940 TGGCAGGAATTCTAAGATAAAGCCT 60.104 40.000 5.23 0.00 38.07 4.58
3650 3814 5.133221 TGGCAGGAATTCTAAGATAAAGCC 58.867 41.667 5.23 0.00 37.75 4.35
3651 3815 6.890979 ATGGCAGGAATTCTAAGATAAAGC 57.109 37.500 5.23 0.00 0.00 3.51
3652 3816 9.512588 ACATATGGCAGGAATTCTAAGATAAAG 57.487 33.333 7.80 0.00 0.00 1.85
3653 3817 9.866655 AACATATGGCAGGAATTCTAAGATAAA 57.133 29.630 7.80 0.00 0.00 1.40
3656 3820 9.289782 GTTAACATATGGCAGGAATTCTAAGAT 57.710 33.333 7.80 0.00 0.00 2.40
3657 3821 7.441157 CGTTAACATATGGCAGGAATTCTAAGA 59.559 37.037 7.80 0.00 0.00 2.10
3658 3822 7.441157 TCGTTAACATATGGCAGGAATTCTAAG 59.559 37.037 7.80 0.00 0.00 2.18
3659 3823 7.276658 TCGTTAACATATGGCAGGAATTCTAA 58.723 34.615 7.80 0.00 0.00 2.10
3660 3824 6.822442 TCGTTAACATATGGCAGGAATTCTA 58.178 36.000 7.80 0.00 0.00 2.10
3661 3825 5.680619 TCGTTAACATATGGCAGGAATTCT 58.319 37.500 7.80 0.00 0.00 2.40
3662 3826 5.049405 CCTCGTTAACATATGGCAGGAATTC 60.049 44.000 7.80 0.00 0.00 2.17
3663 3827 4.821805 CCTCGTTAACATATGGCAGGAATT 59.178 41.667 7.80 0.00 0.00 2.17
3664 3828 4.102524 TCCTCGTTAACATATGGCAGGAAT 59.897 41.667 7.80 0.00 0.00 3.01
3665 3829 3.452990 TCCTCGTTAACATATGGCAGGAA 59.547 43.478 7.80 0.00 0.00 3.36
3666 3830 3.035363 TCCTCGTTAACATATGGCAGGA 58.965 45.455 7.80 5.27 0.00 3.86
3667 3831 3.393800 CTCCTCGTTAACATATGGCAGG 58.606 50.000 7.80 3.06 0.00 4.85
3668 3832 2.802816 GCTCCTCGTTAACATATGGCAG 59.197 50.000 7.80 3.42 0.00 4.85
3669 3833 2.434336 AGCTCCTCGTTAACATATGGCA 59.566 45.455 7.80 0.00 0.00 4.92
3670 3834 3.113260 AGCTCCTCGTTAACATATGGC 57.887 47.619 7.80 4.32 0.00 4.40
3671 3835 6.812160 GGTAATAGCTCCTCGTTAACATATGG 59.188 42.308 7.80 2.00 0.00 2.74
3672 3836 7.603651 AGGTAATAGCTCCTCGTTAACATATG 58.396 38.462 6.39 0.00 0.00 1.78
3673 3837 7.778185 AGGTAATAGCTCCTCGTTAACATAT 57.222 36.000 6.39 0.00 0.00 1.78
3674 3838 7.286087 TCAAGGTAATAGCTCCTCGTTAACATA 59.714 37.037 6.39 0.00 33.09 2.29
3675 3839 6.097839 TCAAGGTAATAGCTCCTCGTTAACAT 59.902 38.462 6.39 0.00 33.09 2.71
3676 3840 5.419788 TCAAGGTAATAGCTCCTCGTTAACA 59.580 40.000 6.39 0.00 33.09 2.41
3677 3841 5.747675 GTCAAGGTAATAGCTCCTCGTTAAC 59.252 44.000 0.00 0.00 33.09 2.01
3678 3842 5.419788 TGTCAAGGTAATAGCTCCTCGTTAA 59.580 40.000 0.00 0.00 33.09 2.01
3679 3843 4.951715 TGTCAAGGTAATAGCTCCTCGTTA 59.048 41.667 0.00 0.00 33.09 3.18
3948 4113 5.105554 CCTCGCATGCTATAGAGATACCTTT 60.106 44.000 17.13 0.00 32.84 3.11
3968 4133 6.961359 TGTTCAATATTACTTGACACCTCG 57.039 37.500 0.00 0.00 34.96 4.63
4110 4275 2.034685 GTCAAAGGGTTGCCTCAAGAAC 59.965 50.000 0.00 0.00 34.50 3.01
4146 4311 2.821366 GCCACTGCACTGGATCCG 60.821 66.667 15.78 4.62 37.47 4.18
4185 4363 9.744468 TCTTGTAAAGGAAAGCTTTTATTTCAC 57.256 29.630 19.75 16.56 46.24 3.18
4217 4418 6.198966 CCACAAGACAAAATAAAACAGAGTGC 59.801 38.462 0.00 0.00 0.00 4.40
4357 4558 3.303395 CGAGGAAAACAGAGCACTTCAAC 60.303 47.826 0.00 0.00 0.00 3.18
4370 4571 4.062991 ACACCACTGAATACGAGGAAAAC 58.937 43.478 0.00 0.00 0.00 2.43
4399 4600 5.005299 TGTGCTGTCATCGTATTATTTCACG 59.995 40.000 0.00 0.00 39.48 4.35
4420 4621 1.994779 GGGAAAATGCAGCGAAATGTG 59.005 47.619 0.00 0.00 0.00 3.21
4454 4655 7.834681 TCCGTATCTAACATATCTGATAGGCTT 59.165 37.037 9.09 6.00 30.76 4.35
4531 4732 2.431057 GAGTCCCGATCACTATGGTTGT 59.569 50.000 0.00 0.00 0.00 3.32
4554 4867 4.406648 AGATGAAGTCGGCATCATTACA 57.593 40.909 9.36 0.00 43.50 2.41
4556 4869 7.012327 CCTTTTTAGATGAAGTCGGCATCATTA 59.988 37.037 9.36 1.80 43.50 1.90
4562 4875 3.343617 CCCTTTTTAGATGAAGTCGGCA 58.656 45.455 0.00 0.00 0.00 5.69
4580 4894 1.003696 GCAGCAGACTAACTTTCCCCT 59.996 52.381 0.00 0.00 0.00 4.79
4584 4898 5.119434 GTCAACTAGCAGCAGACTAACTTTC 59.881 44.000 0.00 0.00 0.00 2.62
4587 4901 3.829601 AGTCAACTAGCAGCAGACTAACT 59.170 43.478 0.00 0.00 37.75 2.24
4588 4902 3.923461 CAGTCAACTAGCAGCAGACTAAC 59.077 47.826 0.00 0.00 37.45 2.34
4591 4905 2.242926 TCAGTCAACTAGCAGCAGACT 58.757 47.619 0.00 0.00 39.95 3.24
4592 4906 2.732412 TCAGTCAACTAGCAGCAGAC 57.268 50.000 0.00 0.00 0.00 3.51
4593 4907 3.393800 GTTTCAGTCAACTAGCAGCAGA 58.606 45.455 0.00 0.00 0.00 4.26
4594 4908 2.481952 GGTTTCAGTCAACTAGCAGCAG 59.518 50.000 0.00 0.00 0.00 4.24
4595 4909 2.494059 GGTTTCAGTCAACTAGCAGCA 58.506 47.619 0.00 0.00 0.00 4.41
4596 4910 1.461127 CGGTTTCAGTCAACTAGCAGC 59.539 52.381 0.00 0.00 0.00 5.25
4597 4911 2.731976 GACGGTTTCAGTCAACTAGCAG 59.268 50.000 0.00 0.00 38.42 4.24
4598 4912 2.101750 TGACGGTTTCAGTCAACTAGCA 59.898 45.455 0.81 0.00 44.56 3.49
4657 4971 0.512085 GACTAGTCGATCGGGTAGCG 59.488 60.000 16.41 2.12 38.68 4.26
4975 5299 0.473755 TTGCTTGGAAGAGTGAGGCA 59.526 50.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.