Multiple sequence alignment - TraesCS6D01G254400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G254400 chr6D 100.000 7446 0 0 1 7446 358983515 358976070 0.000000e+00 13751.0
1 TraesCS6D01G254400 chr6A 92.274 4323 233 37 1 4282 500512266 500508004 0.000000e+00 6039.0
2 TraesCS6D01G254400 chr6A 91.530 1830 65 29 5659 7446 500506489 500504708 0.000000e+00 2438.0
3 TraesCS6D01G254400 chr6A 92.526 1271 61 17 4281 5519 500507922 500506654 0.000000e+00 1790.0
4 TraesCS6D01G254400 chr6B 92.473 1820 84 26 5659 7446 540591915 540590117 0.000000e+00 2553.0
5 TraesCS6D01G254400 chr6B 91.676 1742 78 22 738 2451 540597245 540595543 0.000000e+00 2351.0
6 TraesCS6D01G254400 chr6B 91.517 1556 83 25 5659 7192 560197306 560198834 0.000000e+00 2097.0
7 TraesCS6D01G254400 chr6B 92.320 1263 72 15 3037 4283 540594622 540593369 0.000000e+00 1772.0
8 TraesCS6D01G254400 chr6B 92.025 1141 69 12 3158 4283 560191698 560192831 0.000000e+00 1583.0
9 TraesCS6D01G254400 chr6B 95.647 919 25 5 940 1851 560188798 560189708 0.000000e+00 1461.0
10 TraesCS6D01G254400 chr6B 88.737 1243 61 36 4281 5491 540593288 540592093 0.000000e+00 1447.0
11 TraesCS6D01G254400 chr6B 93.894 606 33 3 1847 2451 560189977 560190579 0.000000e+00 911.0
12 TraesCS6D01G254400 chr6B 89.740 731 48 12 2425 3146 540595446 540594734 0.000000e+00 909.0
13 TraesCS6D01G254400 chr6B 89.193 731 46 16 2425 3146 560190676 560191382 0.000000e+00 881.0
14 TraesCS6D01G254400 chr6B 97.882 425 8 1 5061 5484 560196399 560196823 0.000000e+00 734.0
15 TraesCS6D01G254400 chr6B 84.029 814 54 23 4281 5064 560192912 560193679 0.000000e+00 713.0
16 TraesCS6D01G254400 chr6B 82.916 679 99 12 1 666 560187200 560187874 4.970000e-166 595.0
17 TraesCS6D01G254400 chr6B 81.882 712 114 10 15 715 540598249 540597542 2.990000e-163 586.0
18 TraesCS6D01G254400 chr6B 96.899 129 3 1 3037 3165 560191384 560191511 1.630000e-51 215.0
19 TraesCS6D01G254400 chr6B 97.273 110 2 1 3037 3146 540594732 540594624 1.280000e-42 185.0
20 TraesCS6D01G254400 chr6B 92.708 96 7 0 5490 5585 540592011 540591916 1.010000e-28 139.0
21 TraesCS6D01G254400 chr6B 92.708 96 7 0 5490 5585 560197210 560197305 1.010000e-28 139.0
22 TraesCS6D01G254400 chr6B 100.000 34 0 0 969 1002 540597080 540597047 6.240000e-06 63.9
23 TraesCS6D01G254400 chr6B 100.000 34 0 0 969 1002 560188755 560188788 6.240000e-06 63.9
24 TraesCS6D01G254400 chr7B 76.159 302 57 9 234 520 700605233 700605534 2.170000e-30 145.0
25 TraesCS6D01G254400 chr7A 92.784 97 7 0 3311 3407 581374345 581374249 2.800000e-29 141.0
26 TraesCS6D01G254400 chr7A 88.785 107 11 1 3301 3407 581374240 581374345 6.060000e-26 130.0
27 TraesCS6D01G254400 chr7A 93.151 73 1 3 5584 5655 136806103 136806172 3.670000e-18 104.0
28 TraesCS6D01G254400 chr5A 92.784 97 7 0 3311 3407 680118233 680118329 2.800000e-29 141.0
29 TraesCS6D01G254400 chr4B 92.784 97 7 0 3311 3407 642195553 642195649 2.800000e-29 141.0
30 TraesCS6D01G254400 chr4B 95.652 69 0 2 5587 5655 23660867 23660802 2.840000e-19 108.0
31 TraesCS6D01G254400 chr5D 91.262 103 8 1 3309 3411 556009428 556009327 1.010000e-28 139.0
32 TraesCS6D01G254400 chr5D 94.286 70 1 2 5586 5655 18193788 18193854 3.670000e-18 104.0
33 TraesCS6D01G254400 chr5D 92.000 75 2 3 5582 5655 2137380 2137451 1.320000e-17 102.0
34 TraesCS6D01G254400 chr5B 89.320 103 10 1 3309 3411 695969077 695969178 2.180000e-25 128.0
35 TraesCS6D01G254400 chr3B 95.652 69 0 2 5587 5655 10717588 10717523 2.840000e-19 108.0
36 TraesCS6D01G254400 chr3B 90.667 75 4 2 5581 5655 70293927 70293998 6.150000e-16 97.1
37 TraesCS6D01G254400 chr7D 91.139 79 4 2 5577 5655 448337055 448336980 3.670000e-18 104.0
38 TraesCS6D01G254400 chr7D 88.889 81 5 2 5575 5655 485090868 485090944 6.150000e-16 97.1
39 TraesCS6D01G254400 chr2D 91.139 79 3 3 5577 5655 386706989 386707063 3.670000e-18 104.0
40 TraesCS6D01G254400 chr2D 91.781 73 2 3 5583 5655 270850343 270850275 1.710000e-16 99.0
41 TraesCS6D01G254400 chrUn 87.640 89 5 5 5568 5655 461112267 461112350 1.710000e-16 99.0
42 TraesCS6D01G254400 chr3D 89.873 79 4 3 5577 5655 341550553 341550627 1.710000e-16 99.0
43 TraesCS6D01G254400 chr1A 91.045 67 6 0 23 89 493500215 493500281 2.860000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G254400 chr6D 358976070 358983515 7445 True 13751.000000 13751 100.000000 1 7446 1 chr6D.!!$R1 7445
1 TraesCS6D01G254400 chr6A 500504708 500512266 7558 True 3422.333333 6039 92.110000 1 7446 3 chr6A.!!$R1 7445
2 TraesCS6D01G254400 chr6B 540590117 540598249 8132 True 1111.766667 2553 91.867667 15 7446 9 chr6B.!!$R1 7431
3 TraesCS6D01G254400 chr6B 560187200 560198834 11634 False 853.900000 2097 92.428182 1 7192 11 chr6B.!!$F1 7191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 537 0.034574 TGAAATGTATGCGGGCCTGT 60.035 50.0 14.55 0.00 0.00 4.00 F
1773 2497 0.179097 GCAGTAGGCTGGCTACTCAC 60.179 60.0 33.24 25.52 42.78 3.51 F
1789 2513 0.396435 TCACACTAGCTGGTGGTTGG 59.604 55.0 30.64 18.02 41.09 3.77 F
2859 3989 0.734309 CATGTTTGCTATGCCGCTCA 59.266 50.0 0.00 0.00 0.00 4.26 F
3226 4774 0.248565 TGAGATGCACTGTCAGGCTC 59.751 55.0 4.53 3.87 0.00 4.70 F
3227 4775 0.248565 GAGATGCACTGTCAGGCTCA 59.751 55.0 4.53 0.00 0.00 4.26 F
3229 4777 0.743701 GATGCACTGTCAGGCTCAGG 60.744 60.0 4.53 0.00 37.25 3.86 F
4606 6279 0.400213 TTGGGAGCCGACTGTGAAAT 59.600 50.0 0.00 0.00 0.00 2.17 F
5602 10492 0.337082 TTCACTCCCTCCGTCCCATA 59.663 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 3149 0.034186 CCCAAGCCAGTATGCCTTCA 60.034 55.000 0.00 0.00 31.97 3.02 R
2589 3712 0.102300 GGAGCTCTTTCTCTCCGCTC 59.898 60.000 14.64 0.00 44.67 5.03 R
3226 4774 0.331278 TCCACAGTAAATGGGCCCTG 59.669 55.000 25.70 14.54 37.85 4.45 R
4184 5741 0.040425 CAGCAACGTTAACCTGCCAC 60.040 55.000 18.86 0.00 36.73 5.01 R
4186 5743 1.515081 TACAGCAACGTTAACCTGCC 58.485 50.000 18.86 6.31 36.73 4.85 R
4583 6238 2.673258 TCACAGTCGGCTCCCAATATA 58.327 47.619 0.00 0.00 0.00 0.86 R
4909 6593 2.744202 GGACTTCACTACAAGGTGCATG 59.256 50.000 0.00 0.00 37.16 4.06 R
5608 10498 0.304705 CGCAGTGTCAAAAACGCTCT 59.695 50.000 0.00 0.00 45.69 4.09 R
7151 12103 0.037697 GTTCAATTCAAACCCCGGCC 60.038 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.026879 GGAGATCGACGCAGAGGC 59.973 66.667 0.00 0.00 0.00 4.70
113 114 4.819761 GATGCCAGCTCCGCGTCA 62.820 66.667 16.31 0.00 41.11 4.35
167 168 2.668632 GACCACGAGGCCAATCCA 59.331 61.111 5.01 0.00 39.06 3.41
183 184 0.907230 TCCATCCATGTCCGACACCA 60.907 55.000 2.57 0.00 0.00 4.17
218 219 8.042515 ACAGACTCGAGTAAGAAAGAGTAGTAT 58.957 37.037 20.09 0.00 43.17 2.12
235 236 2.094757 TATATGGGACGCTGCCACGG 62.095 60.000 0.71 0.00 41.95 4.94
254 255 1.770324 CTTGGGTCCCAGAAAGGCT 59.230 57.895 11.40 0.00 33.81 4.58
267 268 5.454045 CCCAGAAAGGCTACTCCTATTCTTC 60.454 48.000 0.00 0.00 46.94 2.87
268 269 5.454045 CCAGAAAGGCTACTCCTATTCTTCC 60.454 48.000 0.00 0.00 46.94 3.46
269 270 5.365314 CAGAAAGGCTACTCCTATTCTTCCT 59.635 44.000 0.00 0.00 46.94 3.36
270 271 5.600898 AGAAAGGCTACTCCTATTCTTCCTC 59.399 44.000 0.00 0.00 46.94 3.71
271 272 3.851979 AGGCTACTCCTATTCTTCCTCC 58.148 50.000 0.00 0.00 45.41 4.30
272 273 2.901192 GGCTACTCCTATTCTTCCTCCC 59.099 54.545 0.00 0.00 0.00 4.30
273 274 2.559231 GCTACTCCTATTCTTCCTCCCG 59.441 54.545 0.00 0.00 0.00 5.14
274 275 1.415200 ACTCCTATTCTTCCTCCCGC 58.585 55.000 0.00 0.00 0.00 6.13
275 276 0.315568 CTCCTATTCTTCCTCCCGCG 59.684 60.000 0.00 0.00 0.00 6.46
276 277 1.113517 TCCTATTCTTCCTCCCGCGG 61.114 60.000 21.04 21.04 0.00 6.46
277 278 1.301009 CTATTCTTCCTCCCGCGGC 60.301 63.158 22.85 0.00 0.00 6.53
278 279 1.749334 CTATTCTTCCTCCCGCGGCT 61.749 60.000 22.85 0.00 0.00 5.52
279 280 1.335132 TATTCTTCCTCCCGCGGCTT 61.335 55.000 22.85 0.00 0.00 4.35
280 281 2.595009 ATTCTTCCTCCCGCGGCTTC 62.595 60.000 22.85 0.00 0.00 3.86
281 282 4.082523 CTTCCTCCCGCGGCTTCA 62.083 66.667 22.85 0.00 0.00 3.02
282 283 4.388499 TTCCTCCCGCGGCTTCAC 62.388 66.667 22.85 0.00 0.00 3.18
296 317 2.804828 CTTCACTTCCCGGGGCTCAC 62.805 65.000 23.50 0.00 0.00 3.51
328 349 1.580059 TACCTGACATGGGGAAGACC 58.420 55.000 0.00 0.00 39.11 3.85
361 382 3.264866 GACTTCGCCACGACCGACT 62.265 63.158 0.00 0.00 34.89 4.18
408 429 4.445385 GTCTCGTCCGCTTTTGTTTAGTTA 59.555 41.667 0.00 0.00 0.00 2.24
416 437 6.697892 TCCGCTTTTGTTTAGTTAAAATGTGG 59.302 34.615 0.00 0.00 38.76 4.17
418 439 6.019479 CGCTTTTGTTTAGTTAAAATGTGGCA 60.019 34.615 0.00 0.00 0.00 4.92
468 495 3.723764 CCGATTTGCATAAATTTCGTCCG 59.276 43.478 0.00 0.00 36.66 4.79
473 500 7.007546 CGATTTGCATAAATTTCGTCCGTTTTA 59.992 33.333 0.00 0.00 36.66 1.52
484 511 7.988904 TTTCGTCCGTTTTATTCAAATTTGT 57.011 28.000 17.47 2.40 0.00 2.83
486 513 9.512435 TTTCGTCCGTTTTATTCAAATTTGTTA 57.488 25.926 17.47 7.96 0.00 2.41
506 537 0.034574 TGAAATGTATGCGGGCCTGT 60.035 50.000 14.55 0.00 0.00 4.00
533 564 2.954868 CGACCCGCGTATCACTGC 60.955 66.667 4.92 0.00 34.64 4.40
628 663 4.464947 GCCAATAAAGACTAGCCCTTGAT 58.535 43.478 0.00 0.00 0.00 2.57
680 715 0.461516 CACCACGCATGAGCTGAGAT 60.462 55.000 0.00 0.00 39.10 2.75
683 718 2.093500 ACCACGCATGAGCTGAGATTTA 60.093 45.455 0.00 0.00 39.10 1.40
780 1251 7.209475 ACCAAACGATGAAAACATTTTCTCAT 58.791 30.769 16.01 5.24 45.14 2.90
847 1318 9.730705 TTAATTGATTTGCCAATACAATTCCAA 57.269 25.926 18.52 10.64 40.21 3.53
848 1319 7.852971 ATTGATTTGCCAATACAATTCCAAG 57.147 32.000 4.53 0.00 35.20 3.61
850 1321 4.888326 TTTGCCAATACAATTCCAAGCT 57.112 36.364 0.00 0.00 0.00 3.74
851 1322 3.872511 TGCCAATACAATTCCAAGCTG 57.127 42.857 0.00 0.00 0.00 4.24
933 1645 3.244665 CCTATTCTCATGTGGCCATAGCA 60.245 47.826 9.72 1.82 42.56 3.49
934 1646 2.804986 TTCTCATGTGGCCATAGCAA 57.195 45.000 9.72 0.00 42.56 3.91
935 1647 2.804986 TCTCATGTGGCCATAGCAAA 57.195 45.000 9.72 0.00 42.56 3.68
936 1648 3.084536 TCTCATGTGGCCATAGCAAAA 57.915 42.857 9.72 0.00 42.56 2.44
937 1649 3.429492 TCTCATGTGGCCATAGCAAAAA 58.571 40.909 9.72 0.00 42.56 1.94
1399 2114 4.974721 CAGGGTGGTGGTGGTGGC 62.975 72.222 0.00 0.00 0.00 5.01
1445 2160 3.925630 ATGTGGGCGGTGGCTCTTG 62.926 63.158 0.00 0.00 41.55 3.02
1455 2170 1.608025 GGTGGCTCTTGTTCGATCACA 60.608 52.381 0.00 0.00 0.00 3.58
1635 2354 3.862124 CGAACTGTCGGCAGAAGG 58.138 61.111 26.48 7.82 45.28 3.46
1761 2485 3.016031 TGGCATGTACAATTGCAGTAGG 58.984 45.455 20.08 0.00 40.66 3.18
1762 2486 2.223572 GGCATGTACAATTGCAGTAGGC 60.224 50.000 20.08 3.19 40.66 3.93
1763 2487 2.684881 GCATGTACAATTGCAGTAGGCT 59.315 45.455 15.04 0.00 45.15 4.58
1764 2488 3.488047 GCATGTACAATTGCAGTAGGCTG 60.488 47.826 15.04 0.00 45.15 4.85
1765 2489 2.710377 TGTACAATTGCAGTAGGCTGG 58.290 47.619 5.05 0.00 45.15 4.85
1773 2497 0.179097 GCAGTAGGCTGGCTACTCAC 60.179 60.000 33.24 25.52 42.78 3.51
1789 2513 0.396435 TCACACTAGCTGGTGGTTGG 59.604 55.000 30.64 18.02 41.09 3.77
1825 2549 3.763097 TGTTGCGGCATCTGAATTAAG 57.237 42.857 2.28 0.00 0.00 1.85
1832 2556 4.188462 CGGCATCTGAATTAAGTGTACCA 58.812 43.478 0.00 0.00 0.00 3.25
1839 2563 8.873830 CATCTGAATTAAGTGTACCACTACAAG 58.126 37.037 0.00 0.00 44.62 3.16
1863 2860 2.743928 GACCAGAAGCTGTGGCGG 60.744 66.667 14.13 1.33 44.37 6.13
1941 2938 3.441101 ACTGGACTGCTGGTTATGTAGA 58.559 45.455 0.00 0.00 0.00 2.59
1975 2972 3.234353 TGGATAGAGGGTACTGCATGAG 58.766 50.000 0.00 0.00 0.00 2.90
2034 3031 6.624352 GCAGATTGCAGAGGTTTTATATCA 57.376 37.500 0.00 0.00 44.26 2.15
2193 3190 3.344515 CCTTTTCAGCCTACACCTTACC 58.655 50.000 0.00 0.00 0.00 2.85
2264 3261 7.467131 GCATTATTTTCTGCAACACCTTGTTTT 60.467 33.333 0.00 0.00 38.77 2.43
2265 3262 7.913674 TTATTTTCTGCAACACCTTGTTTTT 57.086 28.000 0.00 0.00 38.77 1.94
2285 3282 3.896648 TCTCGTGTTTGAAGAAATGCC 57.103 42.857 0.00 0.00 0.00 4.40
2443 3566 9.994432 GTTCTTCAGGAATACAATGACTATTTG 57.006 33.333 0.00 0.00 36.24 2.32
2445 3568 9.739276 TCTTCAGGAATACAATGACTATTTGTT 57.261 29.630 0.00 0.00 0.00 2.83
2458 3581 5.594725 TGACTATTTGTTTGTGGGCACTAAA 59.405 36.000 0.00 0.00 0.00 1.85
2468 3591 5.004922 TGTGGGCACTAAAGTTTTTCTTG 57.995 39.130 0.00 0.00 36.40 3.02
2480 3603 6.478512 AAGTTTTTCTTGTCATGCCCTTAA 57.521 33.333 0.00 0.00 34.77 1.85
2503 3626 2.352388 GGCGTACCTACAGCAAAATCA 58.648 47.619 0.00 0.00 0.00 2.57
2586 3709 7.775561 AGAGTTGCCCTTCAATTTTATAGTAGG 59.224 37.037 0.00 0.00 36.99 3.18
2588 3711 8.282256 AGTTGCCCTTCAATTTTATAGTAGGAT 58.718 33.333 0.00 0.00 36.99 3.24
2589 3712 8.352942 GTTGCCCTTCAATTTTATAGTAGGATG 58.647 37.037 0.00 0.00 36.99 3.51
2644 3767 7.984617 AGCTGTTTAATTTTACTTTGCAAAGGA 59.015 29.630 35.65 29.15 40.31 3.36
2659 3782 7.579589 TTGCAAAGGATTTCATGAATTAACG 57.420 32.000 9.40 0.00 35.03 3.18
2662 3785 6.806249 GCAAAGGATTTCATGAATTAACGTGA 59.194 34.615 9.40 0.00 35.03 4.35
2664 3787 7.447374 AAGGATTTCATGAATTAACGTGACA 57.553 32.000 9.40 0.00 35.85 3.58
2665 3788 7.447374 AGGATTTCATGAATTAACGTGACAA 57.553 32.000 9.40 0.00 35.85 3.18
2720 3850 2.662866 CATGGAATGGCTGGATGAAGT 58.337 47.619 0.00 0.00 41.79 3.01
2733 3863 3.252215 TGGATGAAGTTAAAGGCACGTTG 59.748 43.478 0.00 0.00 0.00 4.10
2749 3879 3.554324 CACGTTGTGCCGTTATAATAGCT 59.446 43.478 10.07 0.00 39.45 3.32
2781 3911 7.147391 TGGGTATTACATATCCACATGAGTTGT 60.147 37.037 0.00 0.00 41.02 3.32
2783 3913 9.120538 GGTATTACATATCCACATGAGTTGTTT 57.879 33.333 0.00 0.00 36.00 2.83
2786 3916 9.905713 ATTACATATCCACATGAGTTGTTTACT 57.094 29.630 0.00 0.00 40.71 2.24
2789 3919 9.162764 ACATATCCACATGAGTTGTTTACTAAC 57.837 33.333 0.00 0.00 37.17 2.34
2790 3920 9.383519 CATATCCACATGAGTTGTTTACTAACT 57.616 33.333 0.00 0.00 40.84 2.24
2791 3921 9.959721 ATATCCACATGAGTTGTTTACTAACTT 57.040 29.630 0.00 0.00 38.42 2.66
2792 3922 8.691661 ATCCACATGAGTTGTTTACTAACTTT 57.308 30.769 0.00 0.00 38.42 2.66
2793 3923 7.925993 TCCACATGAGTTGTTTACTAACTTTG 58.074 34.615 0.00 0.00 38.42 2.77
2794 3924 7.012894 TCCACATGAGTTGTTTACTAACTTTGG 59.987 37.037 0.00 0.00 38.42 3.28
2795 3925 7.012894 CCACATGAGTTGTTTACTAACTTTGGA 59.987 37.037 0.00 0.00 38.42 3.53
2796 3926 8.402472 CACATGAGTTGTTTACTAACTTTGGAA 58.598 33.333 0.00 0.00 38.42 3.53
2831 3961 6.918022 AGTTGTTTACTAACTTTGCATGCTTC 59.082 34.615 20.33 0.00 34.91 3.86
2859 3989 0.734309 CATGTTTGCTATGCCGCTCA 59.266 50.000 0.00 0.00 0.00 4.26
2870 4000 2.074547 TGCCGCTCAAACTAGTGTAC 57.925 50.000 0.00 0.00 0.00 2.90
2905 4035 7.817418 AGCTTTTGTACTTTCCAGTGATTTA 57.183 32.000 0.00 0.00 34.06 1.40
2980 4110 6.039616 GCTGATACTTGAAGTTCAGTAGAGG 58.960 44.000 24.52 10.71 36.57 3.69
2992 4122 5.186797 AGTTCAGTAGAGGATGACCAAGAAG 59.813 44.000 0.00 0.00 38.94 2.85
3033 4163 6.158598 TCTTGATGCCACTTAAAATGCTTTC 58.841 36.000 0.00 0.00 0.00 2.62
3132 4375 5.185442 AGCTGGGTAGTAAACTAACTCAGTC 59.815 44.000 17.48 12.71 37.07 3.51
3197 4744 6.644592 TCTGGTTAACAAATTGTTTGCATAGC 59.355 34.615 16.99 7.90 44.39 2.97
3226 4774 0.248565 TGAGATGCACTGTCAGGCTC 59.751 55.000 4.53 3.87 0.00 4.70
3227 4775 0.248565 GAGATGCACTGTCAGGCTCA 59.751 55.000 4.53 0.00 0.00 4.26
3229 4777 0.743701 GATGCACTGTCAGGCTCAGG 60.744 60.000 4.53 0.00 37.25 3.86
3264 4812 3.009363 TGGATGTTCAGCCTGAATTCTGA 59.991 43.478 10.87 2.64 38.79 3.27
3275 4823 6.541278 CAGCCTGAATTCTGATCAGTAAATCA 59.459 38.462 21.92 19.05 42.19 2.57
3336 4884 4.286032 TCCCTCCGATCCGAATTAAATGAT 59.714 41.667 0.00 0.00 0.00 2.45
3379 4927 5.237344 CCAGTTTACATTGTATAGAGGCTGC 59.763 44.000 0.00 0.00 0.00 5.25
3394 4942 1.668751 GGCTGCGTCAATTAATTCGGA 59.331 47.619 10.27 7.20 0.00 4.55
3396 4944 3.243068 GGCTGCGTCAATTAATTCGGATT 60.243 43.478 10.27 0.00 0.00 3.01
3400 4948 4.396478 TGCGTCAATTAATTCGGATTGGAA 59.604 37.500 0.00 0.00 34.74 3.53
3426 4974 8.214364 AGGAGTATCATTTTCTCCCAGTTTATC 58.786 37.037 6.80 0.00 46.15 1.75
3440 4988 5.107220 CCCAGTTTATCGTGAAACAGTACAC 60.107 44.000 14.39 0.00 41.00 2.90
3452 5000 4.978083 AACAGTACACTATGGAGTACCG 57.022 45.455 12.08 5.96 39.29 4.02
3530 5079 8.584157 TGTATTTATGATTTGTCTTTGTTGCCT 58.416 29.630 0.00 0.00 0.00 4.75
3640 5189 5.368256 TTCACCTACTTGAGTACTTCGTC 57.632 43.478 0.00 0.00 0.00 4.20
3702 5252 1.025812 CTCCAGTACTGTAGGCTCCG 58.974 60.000 21.18 3.81 0.00 4.63
3739 5289 4.503123 GCCATTTTGGTTCCTAACAGCTTT 60.503 41.667 0.00 0.00 40.46 3.51
3742 5292 5.923733 TTTTGGTTCCTAACAGCTTTTCA 57.076 34.783 0.00 0.00 0.00 2.69
3782 5332 2.665165 TGTGAAGCTTGGACCAAACAT 58.335 42.857 2.10 0.00 0.00 2.71
3845 5395 3.840666 TCCAGCCTGATCTTCTAGTTGTT 59.159 43.478 0.00 0.00 0.00 2.83
3882 5432 3.066760 CGGGCCATTTCAGAGGTAATTTC 59.933 47.826 4.39 0.00 0.00 2.17
3902 5459 3.659786 TCAAATCACTTACCGTGTCAGG 58.340 45.455 0.00 0.00 44.16 3.86
3914 5471 5.607939 ACCGTGTCAGGTTGAATATCATA 57.392 39.130 0.00 0.00 43.00 2.15
3915 5472 6.174720 ACCGTGTCAGGTTGAATATCATAT 57.825 37.500 0.00 0.00 43.00 1.78
3916 5473 6.223852 ACCGTGTCAGGTTGAATATCATATC 58.776 40.000 0.00 0.00 43.00 1.63
3917 5474 6.183360 ACCGTGTCAGGTTGAATATCATATCA 60.183 38.462 0.00 0.00 43.00 2.15
3918 5475 6.705825 CCGTGTCAGGTTGAATATCATATCAA 59.294 38.462 0.00 0.00 33.37 2.57
3955 5512 7.298122 GGTGTATGAGTATTCTTTGTTGTGTG 58.702 38.462 0.00 0.00 0.00 3.82
4103 5660 1.622811 TGTTGATGGGGGCATTTGAAC 59.377 47.619 0.00 0.00 0.00 3.18
4113 5670 3.996363 GGGGCATTTGAACAGTTGATTTC 59.004 43.478 0.00 0.00 0.00 2.17
4158 5715 5.705441 CAGTATTGTGCCTCCTCTGTTTTTA 59.295 40.000 0.00 0.00 0.00 1.52
4162 5719 6.478512 TTGTGCCTCCTCTGTTTTTATTTT 57.521 33.333 0.00 0.00 0.00 1.82
4163 5720 6.478512 TGTGCCTCCTCTGTTTTTATTTTT 57.521 33.333 0.00 0.00 0.00 1.94
4168 5725 7.147742 TGCCTCCTCTGTTTTTATTTTTCTGTT 60.148 33.333 0.00 0.00 0.00 3.16
4188 5745 7.325694 TCTGTTTGTTACCTTAGTATAGTGGC 58.674 38.462 0.00 0.00 0.00 5.01
4196 5762 6.231258 ACCTTAGTATAGTGGCAGGTTAAC 57.769 41.667 0.00 0.00 29.99 2.01
4214 5780 5.390567 GGTTAACGTTGCTGTATTCTGAAGG 60.391 44.000 11.99 0.00 0.00 3.46
4224 5790 4.693283 TGTATTCTGAAGGAAGCATACCG 58.307 43.478 0.00 0.00 37.36 4.02
4259 5825 7.388437 ACATGCCAAACACAGAAAATATCATT 58.612 30.769 0.00 0.00 0.00 2.57
4291 5940 8.642908 ATTTTCATGCATGTTAGATGATTGTG 57.357 30.769 25.43 0.00 0.00 3.33
4386 6037 5.396484 ACATCAGTTCTTGCATTTTGATCG 58.604 37.500 0.00 0.00 0.00 3.69
4392 6043 4.827304 TCTTGCATTTTGATCGTGTCAA 57.173 36.364 0.00 2.63 44.87 3.18
4450 6104 6.444704 TCTAAGATGAGGGTTGAATAGAGGT 58.555 40.000 0.00 0.00 0.00 3.85
4482 6136 9.793259 GAATTAGATCTATTGGATAACCCACAA 57.207 33.333 2.58 0.00 46.62 3.33
4501 6155 6.092670 CCCACAACTATGTCTTACAGAACATG 59.907 42.308 0.00 0.00 37.82 3.21
4504 6158 5.359194 ACTATGTCTTACAGAACATGGGG 57.641 43.478 0.00 0.00 0.00 4.96
4560 6214 7.001674 TGTGTTGATCACCTTGGTAACTTAAT 58.998 34.615 0.00 0.00 45.61 1.40
4606 6279 0.400213 TTGGGAGCCGACTGTGAAAT 59.600 50.000 0.00 0.00 0.00 2.17
4607 6280 1.271856 TGGGAGCCGACTGTGAAATA 58.728 50.000 0.00 0.00 0.00 1.40
4616 6289 6.636705 AGCCGACTGTGAAATAGTTATTGTA 58.363 36.000 0.00 0.00 38.91 2.41
4658 6331 5.698832 TGGACGTTATTCTTTGATTTGCTG 58.301 37.500 0.00 0.00 0.00 4.41
4669 6342 4.572985 TTGATTTGCTGACCTTGAACTG 57.427 40.909 0.00 0.00 0.00 3.16
4678 6351 4.516698 GCTGACCTTGAACTGAAATCTGAA 59.483 41.667 0.00 0.00 0.00 3.02
4680 6353 4.511454 TGACCTTGAACTGAAATCTGAACG 59.489 41.667 0.00 0.00 0.00 3.95
4708 6381 7.277981 ACCACGATAAATCTGATACTGTTGAAC 59.722 37.037 0.00 0.00 0.00 3.18
4717 6390 9.950496 AATCTGATACTGTTGAACTCTTTACAT 57.050 29.630 0.00 0.00 0.00 2.29
4720 6393 9.307121 CTGATACTGTTGAACTCTTTACATAGG 57.693 37.037 0.00 0.00 0.00 2.57
4757 6430 6.949352 AGTTGTATGCATTTTATCCTCTGG 57.051 37.500 3.54 0.00 0.00 3.86
4935 6619 4.810790 CACCTTGTAGTGAAGTCCTACAG 58.189 47.826 0.00 0.00 43.98 2.74
4944 6628 6.578313 AGTGAAGTCCTACAGGTCTAGATA 57.422 41.667 0.00 0.00 33.29 1.98
5246 9653 2.478894 ACGTGCCACTGATAAAAAGACG 59.521 45.455 0.00 0.00 0.00 4.18
5256 9663 7.398746 CACTGATAAAAAGACGCGATGATTTA 58.601 34.615 15.93 13.13 0.00 1.40
5310 9718 7.124750 ACCCCTTCCTCAAAAGAATTAATCATG 59.875 37.037 0.00 0.00 0.00 3.07
5334 9745 3.117888 CCCTGCCTATGATGTAAGTGGTT 60.118 47.826 0.00 0.00 0.00 3.67
5433 9844 5.493809 TGTTTGGCTACTATTCAGGGTAAC 58.506 41.667 0.00 0.00 0.00 2.50
5542 10432 7.755591 ACATTACATCTCTGCAACACTTTATG 58.244 34.615 0.00 0.00 0.00 1.90
5591 10481 8.410912 ACTTTGTTATACTTGTTTTTCACTCCC 58.589 33.333 0.00 0.00 0.00 4.30
5592 10482 8.528044 TTTGTTATACTTGTTTTTCACTCCCT 57.472 30.769 0.00 0.00 0.00 4.20
5593 10483 7.739498 TGTTATACTTGTTTTTCACTCCCTC 57.261 36.000 0.00 0.00 0.00 4.30
5594 10484 6.713450 TGTTATACTTGTTTTTCACTCCCTCC 59.287 38.462 0.00 0.00 0.00 4.30
5595 10485 2.572290 ACTTGTTTTTCACTCCCTCCG 58.428 47.619 0.00 0.00 0.00 4.63
5596 10486 2.092592 ACTTGTTTTTCACTCCCTCCGT 60.093 45.455 0.00 0.00 0.00 4.69
5597 10487 2.249844 TGTTTTTCACTCCCTCCGTC 57.750 50.000 0.00 0.00 0.00 4.79
5598 10488 1.202722 TGTTTTTCACTCCCTCCGTCC 60.203 52.381 0.00 0.00 0.00 4.79
5599 10489 0.399075 TTTTTCACTCCCTCCGTCCC 59.601 55.000 0.00 0.00 0.00 4.46
5600 10490 0.765135 TTTTCACTCCCTCCGTCCCA 60.765 55.000 0.00 0.00 0.00 4.37
5601 10491 0.546747 TTTCACTCCCTCCGTCCCAT 60.547 55.000 0.00 0.00 0.00 4.00
5602 10492 0.337082 TTCACTCCCTCCGTCCCATA 59.663 55.000 0.00 0.00 0.00 2.74
5603 10493 0.337082 TCACTCCCTCCGTCCCATAA 59.663 55.000 0.00 0.00 0.00 1.90
5604 10494 1.062428 TCACTCCCTCCGTCCCATAAT 60.062 52.381 0.00 0.00 0.00 1.28
5605 10495 2.178325 TCACTCCCTCCGTCCCATAATA 59.822 50.000 0.00 0.00 0.00 0.98
5606 10496 3.173965 CACTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
5607 10497 4.044952 TCACTCCCTCCGTCCCATAATATA 59.955 45.833 0.00 0.00 0.00 0.86
5608 10498 4.775780 CACTCCCTCCGTCCCATAATATAA 59.224 45.833 0.00 0.00 0.00 0.98
5609 10499 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5610 10500 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5611 10501 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5612 10502 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5613 10503 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5614 10504 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5615 10505 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5616 10506 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5617 10507 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5618 10508 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5619 10509 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
5620 10510 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
5621 10511 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
5622 10512 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
5623 10513 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
5624 10514 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
5625 10515 9.425893 CATAATATAAGAGCGTTTTTGACACTG 57.574 33.333 0.00 0.00 0.00 3.66
5626 10516 2.475200 AAGAGCGTTTTTGACACTGC 57.525 45.000 0.00 0.00 0.00 4.40
5627 10517 0.304705 AGAGCGTTTTTGACACTGCG 59.695 50.000 0.00 0.00 0.00 5.18
5628 10518 0.657368 GAGCGTTTTTGACACTGCGG 60.657 55.000 0.00 0.00 0.00 5.69
5629 10519 1.063488 GCGTTTTTGACACTGCGGT 59.937 52.632 0.00 0.00 0.00 5.68
5639 10529 3.216237 ACTGCGGTGTCAGTGTCA 58.784 55.556 0.00 0.00 44.88 3.58
5640 10530 1.520192 ACTGCGGTGTCAGTGTCAA 59.480 52.632 0.00 0.00 44.88 3.18
5641 10531 0.107897 ACTGCGGTGTCAGTGTCAAA 60.108 50.000 0.00 0.00 44.88 2.69
5642 10532 1.013596 CTGCGGTGTCAGTGTCAAAA 58.986 50.000 0.00 0.00 0.00 2.44
5643 10533 1.400142 CTGCGGTGTCAGTGTCAAAAA 59.600 47.619 0.00 0.00 0.00 1.94
5644 10534 1.131504 TGCGGTGTCAGTGTCAAAAAC 59.868 47.619 0.00 0.00 0.00 2.43
5645 10535 1.854434 GCGGTGTCAGTGTCAAAAACG 60.854 52.381 0.00 0.00 0.00 3.60
5646 10536 1.822581 GGTGTCAGTGTCAAAAACGC 58.177 50.000 0.00 0.00 38.74 4.84
5648 10538 2.538939 GGTGTCAGTGTCAAAAACGCTC 60.539 50.000 0.00 0.00 45.69 5.03
5649 10539 2.351726 GTGTCAGTGTCAAAAACGCTCT 59.648 45.455 0.00 0.00 45.69 4.09
5650 10540 3.006940 TGTCAGTGTCAAAAACGCTCTT 58.993 40.909 0.00 0.00 45.69 2.85
5651 10541 4.033587 GTGTCAGTGTCAAAAACGCTCTTA 59.966 41.667 0.00 0.00 45.69 2.10
5652 10542 4.814234 TGTCAGTGTCAAAAACGCTCTTAT 59.186 37.500 0.00 0.00 45.69 1.73
5653 10543 5.986741 TGTCAGTGTCAAAAACGCTCTTATA 59.013 36.000 0.00 0.00 45.69 0.98
5654 10544 6.649141 TGTCAGTGTCAAAAACGCTCTTATAT 59.351 34.615 0.00 0.00 45.69 0.86
5655 10545 6.955963 GTCAGTGTCAAAAACGCTCTTATATG 59.044 38.462 0.00 0.00 45.69 1.78
5656 10546 6.871492 TCAGTGTCAAAAACGCTCTTATATGA 59.129 34.615 0.00 0.00 45.69 2.15
5657 10547 7.063426 TCAGTGTCAAAAACGCTCTTATATGAG 59.937 37.037 10.56 10.56 45.69 2.90
5753 10644 4.207019 GTGACAAAAGCGAATTTTCCACAG 59.793 41.667 15.55 3.23 39.11 3.66
5757 10648 2.489938 AGCGAATTTTCCACAGCCTA 57.510 45.000 0.00 0.00 0.00 3.93
5797 10690 6.426025 AGAATAAGAACGTGTGAGGGTTTTAC 59.574 38.462 0.00 0.00 0.00 2.01
5821 10715 7.547227 ACCTTCCCAGAATATTTTTCAAATCG 58.453 34.615 0.00 0.00 0.00 3.34
5840 10734 9.492973 TCAAATCGAAATGCATTCTATCATAGA 57.507 29.630 13.38 2.12 35.79 1.98
6046 10951 5.376625 TCCTATATTGTGGTCCATTCTTGC 58.623 41.667 0.00 0.00 0.00 4.01
6088 10993 0.452784 CGCTTGAACTAAACGGCTGC 60.453 55.000 0.00 0.00 0.00 5.25
6191 11096 2.358737 AAGGCCAACGAAGCTCCG 60.359 61.111 5.01 0.00 0.00 4.63
6249 11154 3.435671 CGTGGTTACTTTGAGAATGGGAC 59.564 47.826 0.00 0.00 0.00 4.46
6275 11181 7.043391 CGTTCTTCACTGCTCGATGAATTAATA 60.043 37.037 0.00 0.00 34.43 0.98
6360 11266 1.865340 AGAGTGAAGAACGAAAACGCC 59.135 47.619 0.00 0.00 0.00 5.68
6450 11361 3.503363 TGCATCAAGCTGTGAACCTAAAG 59.497 43.478 0.00 0.00 45.94 1.85
6479 11390 1.876156 GATGATCATGAACCGGGCTTC 59.124 52.381 14.30 1.37 0.00 3.86
6482 11393 2.535485 ATCATGAACCGGGCTTCGCA 62.535 55.000 6.32 0.00 37.59 5.10
6505 11416 0.325602 ACGAATGTTCCGCCCCTTAA 59.674 50.000 0.00 0.00 0.00 1.85
6588 11499 4.731853 TGCCGACCTGGGGATGGA 62.732 66.667 0.00 0.00 38.63 3.41
6596 11507 3.338250 TGGGGATGGAGGTGGTGC 61.338 66.667 0.00 0.00 0.00 5.01
7086 12006 1.039233 AGGAAATGGCTTGCGATGGG 61.039 55.000 0.00 0.00 0.00 4.00
7092 12012 2.822255 GCTTGCGATGGGGCGTTA 60.822 61.111 0.00 0.00 35.06 3.18
7093 12013 2.403378 GCTTGCGATGGGGCGTTAA 61.403 57.895 0.00 0.00 35.06 2.01
7151 12103 4.527583 GCAGAGGCCGAGGCAGAG 62.528 72.222 16.65 3.81 44.11 3.35
7152 12104 3.847602 CAGAGGCCGAGGCAGAGG 61.848 72.222 16.65 0.00 44.11 3.69
7243 12195 3.012518 CGCCCATCTTTTCACTCATTCT 58.987 45.455 0.00 0.00 0.00 2.40
7247 12202 5.866092 GCCCATCTTTTCACTCATTCTTTTC 59.134 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.821759 CGCCCACAGGACACACAAA 60.822 57.895 0.00 0.00 33.47 2.83
89 90 4.819761 GAGCTGGCATCGTCCGCA 62.820 66.667 0.00 0.00 0.00 5.69
167 168 2.365617 GTCTATGGTGTCGGACATGGAT 59.634 50.000 14.78 9.02 37.03 3.41
218 219 4.155733 CCGTGGCAGCGTCCCATA 62.156 66.667 8.28 0.00 34.34 2.74
235 236 1.979155 GCCTTTCTGGGACCCAAGC 60.979 63.158 15.87 8.88 36.00 4.01
254 255 2.595238 GCGGGAGGAAGAATAGGAGTA 58.405 52.381 0.00 0.00 0.00 2.59
267 268 4.394712 AAGTGAAGCCGCGGGAGG 62.395 66.667 29.38 0.38 0.00 4.30
268 269 2.815647 GAAGTGAAGCCGCGGGAG 60.816 66.667 29.38 0.83 0.00 4.30
269 270 4.388499 GGAAGTGAAGCCGCGGGA 62.388 66.667 29.38 0.00 0.00 5.14
274 275 4.778143 CCCCGGGAAGTGAAGCCG 62.778 72.222 26.32 0.00 0.00 5.52
276 277 3.978571 GAGCCCCGGGAAGTGAAGC 62.979 68.421 26.32 15.55 0.00 3.86
277 278 2.269241 GAGCCCCGGGAAGTGAAG 59.731 66.667 26.32 3.67 0.00 3.02
278 279 2.528127 TGAGCCCCGGGAAGTGAA 60.528 61.111 26.32 0.00 0.00 3.18
279 280 3.319198 GTGAGCCCCGGGAAGTGA 61.319 66.667 26.32 0.00 0.00 3.41
280 281 4.760047 CGTGAGCCCCGGGAAGTG 62.760 72.222 26.32 5.97 0.00 3.16
282 283 4.452733 GACGTGAGCCCCGGGAAG 62.453 72.222 26.32 7.36 0.00 3.46
296 317 0.888619 TCAGGTAAGCTCACCAGACG 59.111 55.000 9.27 0.00 41.40 4.18
328 349 1.334243 GAAGTCCGTCTCCTATGTCCG 59.666 57.143 0.00 0.00 0.00 4.79
408 429 9.941325 TTAAATCATACATCTTTGCCACATTTT 57.059 25.926 0.00 0.00 0.00 1.82
484 511 2.884012 CAGGCCCGCATACATTTCATAA 59.116 45.455 0.00 0.00 0.00 1.90
486 513 1.321474 CAGGCCCGCATACATTTCAT 58.679 50.000 0.00 0.00 0.00 2.57
516 547 2.954868 GCAGTGATACGCGGGTCG 60.955 66.667 12.47 0.00 45.38 4.79
533 564 4.761739 ACAGACATTGTATTTGTGAGTGGG 59.238 41.667 0.00 0.00 38.56 4.61
599 633 4.017126 GCTAGTCTTTATTGGCCCTGTTT 58.983 43.478 0.00 0.00 0.00 2.83
669 704 3.941483 CCCGTGTTTAAATCTCAGCTCAT 59.059 43.478 0.00 0.00 0.00 2.90
680 715 2.113562 AGCCCGCCCGTGTTTAAA 59.886 55.556 0.00 0.00 0.00 1.52
810 1281 7.596494 TGGCAAATCAATTAAAGAGAACAGAG 58.404 34.615 0.00 0.00 0.00 3.35
812 1283 8.767478 ATTGGCAAATCAATTAAAGAGAACAG 57.233 30.769 3.01 0.00 34.01 3.16
813 1284 9.638239 GTATTGGCAAATCAATTAAAGAGAACA 57.362 29.630 3.01 0.00 38.24 3.18
831 1302 2.496871 CCAGCTTGGAATTGTATTGGCA 59.503 45.455 0.00 0.00 40.96 4.92
847 1318 2.812011 GTGTGAATTTCCGTTACCAGCT 59.188 45.455 0.00 0.00 0.00 4.24
848 1319 2.412325 CGTGTGAATTTCCGTTACCAGC 60.412 50.000 0.00 0.00 0.00 4.85
850 1321 2.144730 CCGTGTGAATTTCCGTTACCA 58.855 47.619 0.00 0.00 0.00 3.25
851 1322 2.415776 TCCGTGTGAATTTCCGTTACC 58.584 47.619 0.00 0.00 0.00 2.85
1399 2114 1.523711 ATCGCATACCAAGGCCACG 60.524 57.895 5.01 0.00 0.00 4.94
1455 2170 2.731341 GCGTGCTACGAACAGATACACT 60.731 50.000 11.94 0.00 46.05 3.55
1635 2354 5.489792 TGCATCAGAAGTATAATCTCCCC 57.510 43.478 0.00 0.00 0.00 4.81
1761 2485 0.820871 AGCTAGTGTGAGTAGCCAGC 59.179 55.000 6.79 0.00 45.86 4.85
1762 2486 1.135915 CCAGCTAGTGTGAGTAGCCAG 59.864 57.143 6.79 1.49 45.86 4.85
1763 2487 1.186200 CCAGCTAGTGTGAGTAGCCA 58.814 55.000 6.79 0.00 45.86 4.75
1764 2488 1.134965 CACCAGCTAGTGTGAGTAGCC 60.135 57.143 3.89 0.00 45.86 3.93
1765 2489 1.134965 CCACCAGCTAGTGTGAGTAGC 60.135 57.143 11.43 2.70 45.24 3.58
1773 2497 1.237285 GCACCAACCACCAGCTAGTG 61.237 60.000 5.18 5.18 37.51 2.74
1789 2513 2.798145 GCAACAACTACCAACAAGGCAC 60.798 50.000 0.00 0.00 43.14 5.01
1832 2556 1.977854 TCTGGTCATGGCACTTGTAGT 59.022 47.619 0.00 0.00 0.00 2.73
1839 2563 0.607489 ACAGCTTCTGGTCATGGCAC 60.607 55.000 0.00 0.00 35.51 5.01
1863 2860 1.373570 GCAGAGCCACTTGGTACATC 58.626 55.000 0.00 0.00 39.30 3.06
1883 2880 2.359900 GGTAGACAACAGGCCATGAAG 58.640 52.381 5.01 1.70 0.00 3.02
1941 2938 4.952335 CCCTCTATCCAGAAACAGCAAAAT 59.048 41.667 0.00 0.00 0.00 1.82
1975 2972 4.315803 ACAAAGCACTAGTATCACACCAC 58.684 43.478 0.00 0.00 0.00 4.16
2034 3031 8.514594 CACCACATGTGTTTGTTAAGATTAGAT 58.485 33.333 23.79 0.00 40.26 1.98
2051 3048 2.969950 ACTGTGTAGTACCACCACATGT 59.030 45.455 9.47 0.00 38.34 3.21
2148 3145 3.567164 CCAAGCCAGTATGCCTTCATAAG 59.433 47.826 0.00 0.00 36.96 1.73
2152 3149 0.034186 CCCAAGCCAGTATGCCTTCA 60.034 55.000 0.00 0.00 31.97 3.02
2193 3190 6.434652 AGGAGTGGTAGATAATATCTCAACGG 59.565 42.308 5.98 0.00 40.76 4.44
2239 3236 7.481275 AAACAAGGTGTTGCAGAAAATAATG 57.519 32.000 0.00 0.00 40.14 1.90
2264 3261 3.303725 CGGCATTTCTTCAAACACGAGAA 60.304 43.478 0.00 0.00 0.00 2.87
2265 3262 2.223144 CGGCATTTCTTCAAACACGAGA 59.777 45.455 0.00 0.00 0.00 4.04
2342 3340 1.786441 ACTCTTCCACCCCAAAATGGA 59.214 47.619 0.00 0.00 40.96 3.41
2443 3566 5.416083 AGAAAAACTTTAGTGCCCACAAAC 58.584 37.500 0.82 0.00 0.00 2.93
2445 3568 5.046950 ACAAGAAAAACTTTAGTGCCCACAA 60.047 36.000 0.82 0.00 36.61 3.33
2458 3581 5.833131 TCTTAAGGGCATGACAAGAAAAACT 59.167 36.000 0.00 0.00 0.00 2.66
2480 3603 1.263356 TTTGCTGTAGGTACGCCTCT 58.737 50.000 0.00 0.00 45.64 3.69
2492 3615 8.866970 AAAAATTATTCCCATGATTTTGCTGT 57.133 26.923 0.00 0.00 37.52 4.40
2545 3668 6.207614 AGGGCAACTCTTCTTTCTTGTAAATC 59.792 38.462 0.00 0.00 0.00 2.17
2586 3709 1.408702 AGCTCTTTCTCTCCGCTCATC 59.591 52.381 0.00 0.00 0.00 2.92
2588 3711 0.814457 GAGCTCTTTCTCTCCGCTCA 59.186 55.000 6.43 0.00 44.74 4.26
2589 3712 0.102300 GGAGCTCTTTCTCTCCGCTC 59.898 60.000 14.64 0.00 44.67 5.03
2632 3755 8.992073 GTTAATTCATGAAATCCTTTGCAAAGT 58.008 29.630 31.67 17.40 34.20 2.66
2644 3767 9.773328 CACTATTGTCACGTTAATTCATGAAAT 57.227 29.630 13.09 6.75 0.00 2.17
2659 3782 4.058124 TGTTGCAGACTCACTATTGTCAC 58.942 43.478 0.00 0.00 35.81 3.67
2662 3785 3.070018 GCTGTTGCAGACTCACTATTGT 58.930 45.455 0.00 0.00 39.41 2.71
2664 3787 3.692257 AGCTGTTGCAGACTCACTATT 57.308 42.857 0.00 0.00 42.74 1.73
2665 3788 3.766591 ACTAGCTGTTGCAGACTCACTAT 59.233 43.478 0.00 0.00 42.74 2.12
2711 3841 3.134574 ACGTGCCTTTAACTTCATCCA 57.865 42.857 0.00 0.00 0.00 3.41
2733 3863 4.905412 GCAGTAGCTATTATAACGGCAC 57.095 45.455 0.00 8.86 37.91 5.01
2749 3879 5.841783 TGTGGATATGTAATACCCAGCAGTA 59.158 40.000 0.00 0.00 0.00 2.74
2755 3885 7.147391 ACAACTCATGTGGATATGTAATACCCA 60.147 37.037 0.00 0.00 41.93 4.51
2790 3920 8.387015 AGTAAACAACTCGATGGACATTCCAAA 61.387 37.037 0.00 0.00 42.09 3.28
2791 3921 6.966490 AGTAAACAACTCGATGGACATTCCAA 60.966 38.462 0.00 0.00 42.09 3.53
2792 3922 5.512404 AGTAAACAACTCGATGGACATTCCA 60.512 40.000 0.00 0.00 42.74 3.53
2793 3923 4.935808 AGTAAACAACTCGATGGACATTCC 59.064 41.667 0.00 0.00 30.33 3.01
2794 3924 7.331193 AGTTAGTAAACAACTCGATGGACATTC 59.669 37.037 0.00 0.00 39.80 2.67
2795 3925 7.159372 AGTTAGTAAACAACTCGATGGACATT 58.841 34.615 0.00 0.00 39.80 2.71
2796 3926 6.698380 AGTTAGTAAACAACTCGATGGACAT 58.302 36.000 0.00 0.00 39.80 3.06
2831 3961 4.866486 GGCATAGCAAACATGGAGAAAAAG 59.134 41.667 0.00 0.00 0.00 2.27
2859 3989 5.164022 GCTATTTTGTCGCGTACACTAGTTT 60.164 40.000 5.77 0.00 38.00 2.66
2890 4020 7.234355 AGATTCAGGTTAAATCACTGGAAAGT 58.766 34.615 0.00 0.00 35.92 2.66
2905 4035 5.237344 CGAGAACAGAACAAAGATTCAGGTT 59.763 40.000 0.00 0.00 33.62 3.50
2969 4099 5.407407 TTCTTGGTCATCCTCTACTGAAC 57.593 43.478 0.00 0.00 34.23 3.18
2980 4110 2.505819 TCCCTAAGCCTTCTTGGTCATC 59.494 50.000 0.00 0.00 38.35 2.92
3033 4163 3.244457 ACGGTTTAGAAGACAAAGAGGGG 60.244 47.826 0.00 0.00 0.00 4.79
3074 4317 3.015327 AGGAGCTATTTCAAGCAGCAAG 58.985 45.455 0.00 0.00 45.30 4.01
3075 4318 3.077484 AGGAGCTATTTCAAGCAGCAA 57.923 42.857 0.00 0.00 45.30 3.91
3076 4319 2.751259 CAAGGAGCTATTTCAAGCAGCA 59.249 45.455 0.00 0.00 45.30 4.41
3132 4375 6.838198 TTATAACATAAAGCACTAGCACCG 57.162 37.500 0.00 0.00 45.49 4.94
3165 4518 8.863049 CAAACAATTTGTTAACCAGATATCAGC 58.137 33.333 14.81 0.00 40.14 4.26
3166 4519 8.863049 GCAAACAATTTGTTAACCAGATATCAG 58.137 33.333 14.81 0.00 40.14 2.90
3197 4744 3.118482 ACAGTGCATCTCAGGTAGGATTG 60.118 47.826 0.00 0.00 0.00 2.67
3226 4774 0.331278 TCCACAGTAAATGGGCCCTG 59.669 55.000 25.70 14.54 37.85 4.45
3227 4775 1.063717 CATCCACAGTAAATGGGCCCT 60.064 52.381 25.70 5.02 37.85 5.19
3229 4777 2.143876 ACATCCACAGTAAATGGGCC 57.856 50.000 0.00 0.00 37.85 5.80
3239 4787 2.189594 TTCAGGCTGAACATCCACAG 57.810 50.000 25.38 0.00 30.26 3.66
3240 4788 2.885135 ATTCAGGCTGAACATCCACA 57.115 45.000 30.71 7.94 39.45 4.17
3264 4812 8.807118 TGAGTCTACAAGAAGTGATTTACTGAT 58.193 33.333 0.00 0.00 40.26 2.90
3275 4823 5.791336 TGTGACATGAGTCTACAAGAAGT 57.209 39.130 0.00 0.00 45.20 3.01
3336 4884 4.080919 ACTGGACATTGTATAGAAGCTGCA 60.081 41.667 1.02 0.00 0.00 4.41
3379 4927 5.295787 TCCTTCCAATCCGAATTAATTGACG 59.704 40.000 5.17 3.90 35.35 4.35
3394 4942 6.068853 TGGGAGAAAATGATACTCCTTCCAAT 60.069 38.462 0.00 0.00 46.39 3.16
3396 4944 4.788075 TGGGAGAAAATGATACTCCTTCCA 59.212 41.667 0.00 0.00 46.39 3.53
3400 4948 6.394345 AAACTGGGAGAAAATGATACTCCT 57.606 37.500 0.00 0.00 46.39 3.69
3426 4974 4.806330 ACTCCATAGTGTACTGTTTCACG 58.194 43.478 0.00 0.00 39.25 4.35
3440 4988 5.455056 AGCAAATACTCGGTACTCCATAG 57.545 43.478 0.00 0.00 0.00 2.23
3511 5060 7.230849 TGAATAGGCAACAAAGACAAATCAT 57.769 32.000 0.00 0.00 41.41 2.45
3606 5155 6.444704 TCAAGTAGGTGAATCCCTCTTATCT 58.555 40.000 0.00 0.00 35.97 1.98
3640 5189 2.109609 CCAATCGATGGCATTCGTTG 57.890 50.000 0.00 12.39 43.80 4.10
3693 5243 1.255667 TGTTCCTGACCGGAGCCTAC 61.256 60.000 9.46 0.00 44.28 3.18
3702 5252 1.620822 AATGGCAACTGTTCCTGACC 58.379 50.000 0.00 0.00 37.61 4.02
3739 5289 9.089601 CACATTTTATCTGCAGCATAATTTGAA 57.910 29.630 9.47 6.14 0.00 2.69
3742 5292 9.309516 CTTCACATTTTATCTGCAGCATAATTT 57.690 29.630 9.47 2.92 0.00 1.82
3782 5332 2.369668 TAACCTCCTTTGGATCCCCA 57.630 50.000 9.90 0.00 41.64 4.96
3845 5395 1.381327 CCCGAGGCCTCTACTTCCA 60.381 63.158 29.73 0.00 0.00 3.53
3947 5504 4.646572 TGTAGCCATGTTATCACACAACA 58.353 39.130 0.00 0.00 40.01 3.33
3948 5505 5.572211 CATGTAGCCATGTTATCACACAAC 58.428 41.667 0.00 0.00 42.92 3.32
4037 5594 6.709846 CCCAATTTTGCCAAAGAAAGTTGATA 59.290 34.615 0.00 0.00 33.92 2.15
4064 5621 4.238761 ACAATACAGTACATCCGATCCG 57.761 45.455 0.00 0.00 0.00 4.18
4071 5628 4.821805 CCCCCATCAACAATACAGTACATC 59.178 45.833 0.00 0.00 0.00 3.06
4081 5638 2.549082 TCAAATGCCCCCATCAACAAT 58.451 42.857 0.00 0.00 0.00 2.71
4084 5641 1.622811 TGTTCAAATGCCCCCATCAAC 59.377 47.619 0.00 0.00 0.00 3.18
4122 5679 9.672673 GGAGGCACAATACTGTAATATCATTAT 57.327 33.333 0.00 0.00 33.22 1.28
4124 5681 7.749666 AGGAGGCACAATACTGTAATATCATT 58.250 34.615 0.00 0.00 33.22 2.57
4143 5700 6.749139 ACAGAAAAATAAAAACAGAGGAGGC 58.251 36.000 0.00 0.00 0.00 4.70
4162 5719 7.820872 GCCACTATACTAAGGTAACAAACAGAA 59.179 37.037 0.00 0.00 41.41 3.02
4163 5720 7.038870 TGCCACTATACTAAGGTAACAAACAGA 60.039 37.037 0.00 0.00 41.41 3.41
4168 5725 5.722923 ACCTGCCACTATACTAAGGTAACAA 59.277 40.000 0.00 0.00 36.28 2.83
4182 5739 1.071071 AGCAACGTTAACCTGCCACTA 59.929 47.619 18.86 0.00 36.73 2.74
4184 5741 0.040425 CAGCAACGTTAACCTGCCAC 60.040 55.000 18.86 0.00 36.73 5.01
4186 5743 1.515081 TACAGCAACGTTAACCTGCC 58.485 50.000 18.86 6.31 36.73 4.85
4188 5745 4.688879 TCAGAATACAGCAACGTTAACCTG 59.311 41.667 16.55 16.55 0.00 4.00
4196 5762 3.181516 GCTTCCTTCAGAATACAGCAACG 60.182 47.826 3.68 0.00 32.82 4.10
4214 5780 6.128795 GCATGTTAGTAAGATCGGTATGCTTC 60.129 42.308 0.00 0.00 36.42 3.86
4224 5790 6.371548 TCTGTGTTTGGCATGTTAGTAAGATC 59.628 38.462 0.00 0.00 0.00 2.75
4259 5825 9.089601 CATCTAACATGCATGAAAATTAGCAAA 57.910 29.630 32.75 13.57 40.76 3.68
4291 5940 6.745907 GGTAAAAGAAACACAGTTGTTCTGAC 59.254 38.462 1.79 0.00 45.69 3.51
4386 6037 4.918810 ACCAGAAGTCCAAAATTGACAC 57.081 40.909 0.00 0.00 0.00 3.67
4501 6155 4.617253 AAAAACTGTTGGCTATTTCCCC 57.383 40.909 0.00 0.00 0.00 4.81
4539 6193 8.698973 TTTGATTAAGTTACCAAGGTGATCAA 57.301 30.769 0.00 5.70 31.41 2.57
4583 6238 2.673258 TCACAGTCGGCTCCCAATATA 58.327 47.619 0.00 0.00 0.00 0.86
4630 6303 8.162245 GCAAATCAAAGAATAACGTCCAAATTC 58.838 33.333 0.00 0.00 0.00 2.17
4639 6312 5.942872 AGGTCAGCAAATCAAAGAATAACG 58.057 37.500 0.00 0.00 0.00 3.18
4645 6318 4.889409 AGTTCAAGGTCAGCAAATCAAAGA 59.111 37.500 0.00 0.00 0.00 2.52
4647 6320 4.644234 TCAGTTCAAGGTCAGCAAATCAAA 59.356 37.500 0.00 0.00 0.00 2.69
4658 6331 4.511826 ACGTTCAGATTTCAGTTCAAGGTC 59.488 41.667 0.00 0.00 0.00 3.85
4669 6342 6.636666 TTTATCGTGGTACGTTCAGATTTC 57.363 37.500 0.00 0.00 43.14 2.17
4678 6351 6.039047 ACAGTATCAGATTTATCGTGGTACGT 59.961 38.462 0.00 0.00 43.14 3.57
4680 6353 7.919091 TCAACAGTATCAGATTTATCGTGGTAC 59.081 37.037 0.00 0.00 0.00 3.34
4717 6390 7.705325 GCATACAACTTATTCGAAAGAGACCTA 59.295 37.037 15.50 0.00 43.69 3.08
4720 6393 7.290857 TGCATACAACTTATTCGAAAGAGAC 57.709 36.000 15.50 0.96 43.69 3.36
4864 6544 6.040278 TGTTCTCTGATCATCTAGTCCATGTC 59.960 42.308 0.00 0.00 0.00 3.06
4909 6593 2.744202 GGACTTCACTACAAGGTGCATG 59.256 50.000 0.00 0.00 37.16 4.06
4935 6619 5.810080 AGGCCACAACTTATATCTAGACC 57.190 43.478 5.01 0.00 0.00 3.85
4944 6628 3.525800 ACTGGAAAGGCCACAACTTAT 57.474 42.857 5.01 0.00 43.33 1.73
5246 9653 3.421231 CGAGTAGGACGTTAAATCATCGC 59.579 47.826 0.00 0.00 0.00 4.58
5256 9663 3.406764 AGTTCTGTACGAGTAGGACGTT 58.593 45.455 0.00 0.00 43.62 3.99
5310 9718 1.421646 ACTTACATCATAGGCAGGGGC 59.578 52.381 0.00 0.00 40.13 5.80
5334 9745 9.682465 ATCACAGTACTAGTTCTACACAGATAA 57.318 33.333 0.00 0.00 0.00 1.75
5433 9844 5.062934 TCGCAGGATTTGTAATCAAACTACG 59.937 40.000 2.24 0.00 44.69 3.51
5509 10301 3.750130 GCAGAGATGTAATGTATGGCAGG 59.250 47.826 0.00 0.00 28.35 4.85
5585 10475 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
5586 10476 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5587 10477 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5588 10478 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5589 10479 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5590 10480 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5591 10481 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5592 10482 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5593 10483 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5594 10484 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5595 10485 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5596 10486 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5597 10487 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5598 10488 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5599 10489 9.425893 CAGTGTCAAAAACGCTCTTATATTATG 57.574 33.333 0.00 0.00 45.69 1.90
5600 10490 8.122952 GCAGTGTCAAAAACGCTCTTATATTAT 58.877 33.333 0.00 0.00 45.69 1.28
5601 10491 7.461107 GCAGTGTCAAAAACGCTCTTATATTA 58.539 34.615 0.00 0.00 45.69 0.98
5602 10492 6.314784 GCAGTGTCAAAAACGCTCTTATATT 58.685 36.000 0.00 0.00 45.69 1.28
5603 10493 5.445939 CGCAGTGTCAAAAACGCTCTTATAT 60.446 40.000 0.00 0.00 45.69 0.86
5604 10494 4.143200 CGCAGTGTCAAAAACGCTCTTATA 60.143 41.667 0.00 0.00 45.69 0.98
5605 10495 3.363970 CGCAGTGTCAAAAACGCTCTTAT 60.364 43.478 0.00 0.00 45.69 1.73
5606 10496 2.033236 CGCAGTGTCAAAAACGCTCTTA 60.033 45.455 0.00 0.00 45.69 2.10
5607 10497 1.268032 CGCAGTGTCAAAAACGCTCTT 60.268 47.619 0.00 0.00 45.69 2.85
5608 10498 0.304705 CGCAGTGTCAAAAACGCTCT 59.695 50.000 0.00 0.00 45.69 4.09
5609 10499 0.657368 CCGCAGTGTCAAAAACGCTC 60.657 55.000 0.00 0.00 45.69 5.03
5611 10501 1.063488 ACCGCAGTGTCAAAAACGC 59.937 52.632 0.00 0.00 38.74 4.84
5612 10502 2.853457 CACCGCAGTGTCAAAAACG 58.147 52.632 0.00 0.00 39.30 3.60
5623 10513 1.013596 TTTTGACACTGACACCGCAG 58.986 50.000 0.00 0.00 41.63 5.18
5624 10514 1.131504 GTTTTTGACACTGACACCGCA 59.868 47.619 0.00 0.00 0.00 5.69
5625 10515 1.822581 GTTTTTGACACTGACACCGC 58.177 50.000 0.00 0.00 0.00 5.68
5626 10516 1.854434 GCGTTTTTGACACTGACACCG 60.854 52.381 0.00 0.00 0.00 4.94
5627 10517 1.400494 AGCGTTTTTGACACTGACACC 59.600 47.619 0.00 0.00 0.00 4.16
5628 10518 2.351726 AGAGCGTTTTTGACACTGACAC 59.648 45.455 0.00 0.00 0.00 3.67
5629 10519 2.627945 AGAGCGTTTTTGACACTGACA 58.372 42.857 0.00 0.00 0.00 3.58
5630 10520 3.675467 AAGAGCGTTTTTGACACTGAC 57.325 42.857 0.00 0.00 0.00 3.51
5631 10521 6.871492 TCATATAAGAGCGTTTTTGACACTGA 59.129 34.615 0.00 0.00 0.00 3.41
5632 10522 7.060600 TCATATAAGAGCGTTTTTGACACTG 57.939 36.000 0.00 0.00 0.00 3.66
5633 10523 6.874134 ACTCATATAAGAGCGTTTTTGACACT 59.126 34.615 4.89 0.00 39.26 3.55
5634 10524 7.061752 ACTCATATAAGAGCGTTTTTGACAC 57.938 36.000 4.89 0.00 39.26 3.67
5635 10525 8.033038 ACTACTCATATAAGAGCGTTTTTGACA 58.967 33.333 4.89 0.00 39.26 3.58
5636 10526 8.408743 ACTACTCATATAAGAGCGTTTTTGAC 57.591 34.615 4.89 0.00 39.26 3.18
5637 10527 8.997621 AACTACTCATATAAGAGCGTTTTTGA 57.002 30.769 4.89 0.00 39.26 2.69
5638 10528 9.690434 GAAACTACTCATATAAGAGCGTTTTTG 57.310 33.333 18.75 2.02 40.01 2.44
5639 10529 8.592998 CGAAACTACTCATATAAGAGCGTTTTT 58.407 33.333 18.75 9.29 40.01 1.94
5640 10530 7.972277 TCGAAACTACTCATATAAGAGCGTTTT 59.028 33.333 18.75 10.53 40.01 2.43
5641 10531 7.478322 TCGAAACTACTCATATAAGAGCGTTT 58.522 34.615 18.20 18.20 41.30 3.60
5642 10532 7.012138 TCTCGAAACTACTCATATAAGAGCGTT 59.988 37.037 4.89 6.24 39.26 4.84
5643 10533 6.482641 TCTCGAAACTACTCATATAAGAGCGT 59.517 38.462 4.89 0.54 39.26 5.07
5644 10534 6.889494 TCTCGAAACTACTCATATAAGAGCG 58.111 40.000 4.89 0.39 39.26 5.03
5645 10535 9.685828 ATTTCTCGAAACTACTCATATAAGAGC 57.314 33.333 4.89 0.00 34.60 4.09
5680 10570 0.921166 ATGGCATCAGTCCATGTGGA 59.079 50.000 0.00 0.00 42.39 4.02
5681 10571 2.643995 TATGGCATCAGTCCATGTGG 57.356 50.000 1.65 0.00 43.67 4.17
5738 10629 2.489938 TAGGCTGTGGAAAATTCGCT 57.510 45.000 0.00 0.00 0.00 4.93
5753 10644 6.765915 ATTCTGGAAAGACAAGATTTAGGC 57.234 37.500 0.00 0.00 0.00 3.93
5757 10648 8.507249 CGTTCTTATTCTGGAAAGACAAGATTT 58.493 33.333 0.00 0.00 31.62 2.17
5781 10674 2.486013 GGAAGGTAAAACCCTCACACGT 60.486 50.000 0.00 0.00 39.75 4.49
5797 10690 7.771183 TCGATTTGAAAAATATTCTGGGAAGG 58.229 34.615 0.00 0.00 0.00 3.46
5821 10715 9.661187 CACAAACTCTATGATAGAATGCATTTC 57.339 33.333 14.33 8.01 33.75 2.17
5838 10732 6.182627 TCATAAGGATGCATTCACAAACTCT 58.817 36.000 7.96 0.00 32.62 3.24
5839 10733 6.441093 TCATAAGGATGCATTCACAAACTC 57.559 37.500 7.96 0.00 32.62 3.01
5840 10734 6.802608 CATCATAAGGATGCATTCACAAACT 58.197 36.000 7.96 0.00 46.35 2.66
5883 10777 6.588204 ACCTGAAAACATAAAAAGGAAACCC 58.412 36.000 0.00 0.00 0.00 4.11
6011 10916 6.126652 ACCACAATATAGGAGCAGTTCAGAAT 60.127 38.462 0.00 0.00 0.00 2.40
6013 10918 4.716784 ACCACAATATAGGAGCAGTTCAGA 59.283 41.667 0.00 0.00 0.00 3.27
6021 10926 5.234466 AGAATGGACCACAATATAGGAGC 57.766 43.478 0.00 0.00 0.00 4.70
6024 10929 4.214119 CGCAAGAATGGACCACAATATAGG 59.786 45.833 0.00 0.00 43.02 2.57
6025 10930 4.214119 CCGCAAGAATGGACCACAATATAG 59.786 45.833 0.00 0.00 43.02 1.31
6046 10951 3.575965 AATTCTGCTTTGCTTTACCCG 57.424 42.857 0.00 0.00 0.00 5.28
6088 10993 2.577449 AACCCTGCAACGAAAAACAG 57.423 45.000 0.00 0.00 0.00 3.16
6191 11096 2.311688 AATCGTCGATGGGGTCCTGC 62.312 60.000 8.83 0.00 0.00 4.85
6249 11154 1.982612 TCATCGAGCAGTGAAGAACG 58.017 50.000 0.00 0.00 0.00 3.95
6275 11181 8.950210 CAGTCACTTCCAGATTGTATTTTGTAT 58.050 33.333 0.00 0.00 0.00 2.29
6360 11266 3.520187 TGATCCATCGGCGATCATG 57.480 52.632 21.25 10.93 40.88 3.07
6450 11361 3.812053 GGTTCATGATCATCACAGTAGCC 59.188 47.826 4.86 0.00 0.00 3.93
6479 11390 1.991430 CGGAACATTCGTCTCTGCG 59.009 57.895 0.00 0.00 0.00 5.18
6482 11393 1.218316 GGGCGGAACATTCGTCTCT 59.782 57.895 0.00 0.00 32.30 3.10
6505 11416 2.361610 CGGTCAGGCAAGGGCAAT 60.362 61.111 0.00 0.00 43.71 3.56
6576 11487 2.286425 CCACCTCCATCCCCAGGT 60.286 66.667 0.00 0.00 44.42 4.00
7086 12006 1.337167 ACTACCCACGAAGTTAACGCC 60.337 52.381 0.00 0.00 41.61 5.68
7092 12012 1.125633 ACACCACTACCCACGAAGTT 58.874 50.000 0.00 0.00 41.61 2.66
7148 12100 0.611896 CAATTCAAACCCCGGCCTCT 60.612 55.000 0.00 0.00 0.00 3.69
7149 12101 0.610785 TCAATTCAAACCCCGGCCTC 60.611 55.000 0.00 0.00 0.00 4.70
7150 12102 0.178947 TTCAATTCAAACCCCGGCCT 60.179 50.000 0.00 0.00 0.00 5.19
7151 12103 0.037697 GTTCAATTCAAACCCCGGCC 60.038 55.000 0.00 0.00 0.00 6.13
7152 12104 0.676736 TGTTCAATTCAAACCCCGGC 59.323 50.000 0.00 0.00 0.00 6.13
7153 12105 3.460857 TTTGTTCAATTCAAACCCCGG 57.539 42.857 0.00 0.00 31.17 5.73
7154 12106 5.049749 GGAATTTTGTTCAATTCAAACCCCG 60.050 40.000 8.11 0.00 42.68 5.73
7155 12107 6.061441 AGGAATTTTGTTCAATTCAAACCCC 58.939 36.000 8.11 0.00 42.68 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.