Multiple sequence alignment - TraesCS6D01G254200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G254200 chr6D 100.000 5253 0 0 1 5253 358329684 358324432 0.000000e+00 9701.0
1 TraesCS6D01G254200 chr6B 98.186 3143 46 6 1326 4466 539729897 539726764 0.000000e+00 5478.0
2 TraesCS6D01G254200 chr6B 92.804 1334 51 14 1 1316 539731246 539729940 0.000000e+00 1890.0
3 TraesCS6D01G254200 chr6B 92.694 219 15 1 5035 5253 539724661 539724444 1.100000e-81 315.0
4 TraesCS6D01G254200 chr6B 100.000 105 0 0 1331 1435 261702448 261702344 1.490000e-45 195.0
5 TraesCS6D01G254200 chr6B 94.690 113 6 0 4485 4597 539726775 539726663 5.410000e-40 176.0
6 TraesCS6D01G254200 chr6B 85.235 149 10 3 4731 4879 539726370 539726234 5.480000e-30 143.0
7 TraesCS6D01G254200 chr6B 100.000 33 0 0 1475 1507 539729944 539729912 1.580000e-05 62.1
8 TraesCS6D01G254200 chr6B 100.000 31 0 0 4646 4676 539726407 539726377 2.040000e-04 58.4
9 TraesCS6D01G254200 chr6B 100.000 31 0 0 4646 4676 539726464 539726434 2.040000e-04 58.4
10 TraesCS6D01G254200 chr6B 100.000 31 0 0 4646 4676 539726521 539726491 2.040000e-04 58.4
11 TraesCS6D01G254200 chr6A 95.083 2827 94 16 1860 4676 500085423 500082632 0.000000e+00 4409.0
12 TraesCS6D01G254200 chr6A 90.980 1153 39 19 12 1137 500087255 500086141 0.000000e+00 1493.0
13 TraesCS6D01G254200 chr6A 86.092 719 59 20 1157 1859 500086147 500085454 0.000000e+00 736.0
14 TraesCS6D01G254200 chr6A 93.190 279 10 4 4976 5253 500081550 500081280 8.190000e-108 401.0
15 TraesCS6D01G254200 chr6A 90.533 169 15 1 3518 3686 520355719 520355552 6.850000e-54 222.0
16 TraesCS6D01G254200 chr6A 96.063 127 5 0 4697 4823 500082645 500082519 1.920000e-49 207.0
17 TraesCS6D01G254200 chr2A 88.442 199 20 3 3501 3698 35975989 35976185 2.450000e-58 237.0
18 TraesCS6D01G254200 chr2A 85.859 198 28 0 3489 3686 656240943 656241140 1.480000e-50 211.0
19 TraesCS6D01G254200 chr2D 88.265 196 22 1 3501 3696 32763244 32763438 3.160000e-57 233.0
20 TraesCS6D01G254200 chr2D 86.869 198 26 0 3489 3686 512686866 512687063 6.850000e-54 222.0
21 TraesCS6D01G254200 chr2B 88.265 196 22 1 3501 3696 54440312 54440506 3.160000e-57 233.0
22 TraesCS6D01G254200 chr2B 86.364 198 27 0 3489 3686 602763477 602763674 3.190000e-52 217.0
23 TraesCS6D01G254200 chr7B 94.949 99 5 0 4877 4975 223611500 223611598 7.040000e-34 156.0
24 TraesCS6D01G254200 chr3B 95.833 96 4 0 4880 4975 770113258 770113353 7.040000e-34 156.0
25 TraesCS6D01G254200 chr3B 93.137 102 7 0 4874 4975 821813854 821813955 3.280000e-32 150.0
26 TraesCS6D01G254200 chr1A 94.845 97 5 0 4879 4975 547342622 547342718 9.110000e-33 152.0
27 TraesCS6D01G254200 chr7A 93.939 99 6 0 4877 4975 171246985 171246887 3.280000e-32 150.0
28 TraesCS6D01G254200 chr7A 100.000 28 0 0 5184 5211 82204220 82204193 1.000000e-02 52.8
29 TraesCS6D01G254200 chr5D 93.939 99 6 0 4877 4975 519823133 519823231 3.280000e-32 150.0
30 TraesCS6D01G254200 chr7D 93.878 98 6 0 4878 4975 607214420 607214517 1.180000e-31 148.0
31 TraesCS6D01G254200 chr7D 84.404 109 12 4 2657 2762 46993694 46993800 9.310000e-18 102.0
32 TraesCS6D01G254200 chr1B 93.069 101 5 2 4877 4975 670233089 670233189 4.240000e-31 147.0
33 TraesCS6D01G254200 chr5B 92.929 99 7 0 4877 4975 462146498 462146400 1.520000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G254200 chr6D 358324432 358329684 5252 True 9701.000000 9701 100.000000 1 5253 1 chr6D.!!$R1 5252
1 TraesCS6D01G254200 chr6B 539724444 539731246 6802 True 915.477778 5478 95.956556 1 5253 9 chr6B.!!$R2 5252
2 TraesCS6D01G254200 chr6A 500081280 500087255 5975 True 1449.200000 4409 92.281600 12 5253 5 chr6A.!!$R2 5241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 642 0.038159 CCTCCACGTCTCTCACCAAC 60.038 60.000 0.00 0.0 0.00 3.77 F
802 842 0.749649 AGCTAGCCAATCGACCTGAG 59.250 55.000 12.13 0.0 0.00 3.35 F
2445 2579 1.400494 GCGGAGAAACAACGGCATTAT 59.600 47.619 0.00 0.0 33.65 1.28 F
3210 3345 2.200373 TTGAGAAACCCTAGCTTGGC 57.800 50.000 8.91 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 2579 0.179073 GCTAAATCTGCCTCCGCTCA 60.179 55.0 0.00 0.00 35.36 4.26 R
3081 3216 7.325660 TGGTATACGTACTTTTAGACTCAGG 57.674 40.0 0.00 0.00 0.00 3.86 R
3253 3395 0.322008 GTCTTGGCCAAGCTGCTAGT 60.322 55.0 36.24 0.00 38.28 2.57 R
4971 6235 0.445829 TACAAACATGGTGCGCATCG 59.554 50.0 15.91 3.07 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.903294 CTCTAGGCTCCAGCTGCAA 59.097 57.895 8.66 0.00 41.70 4.08
141 145 2.095843 GGAAACGCGCTAGCAACG 59.904 61.111 21.69 21.69 45.49 4.10
200 204 2.743179 GGGGGAAGTCGATGGGGAC 61.743 68.421 0.00 0.00 37.19 4.46
228 232 3.217017 CCGTAGGCAGGCGCTAGA 61.217 66.667 7.64 0.00 46.14 2.43
229 233 2.333225 CGTAGGCAGGCGCTAGAG 59.667 66.667 7.64 0.00 38.60 2.43
231 235 3.227276 TAGGCAGGCGCTAGAGGC 61.227 66.667 12.28 12.28 38.60 4.70
233 237 2.353338 TAGGCAGGCGCTAGAGGCTA 62.353 60.000 21.80 13.51 45.76 3.93
425 443 4.024143 TGCGTCGCATGCAACCAC 62.024 61.111 17.58 3.88 37.15 4.16
427 445 3.353029 CGTCGCATGCAACCACCA 61.353 61.111 19.57 0.00 0.00 4.17
448 476 4.704833 CCACCACCACCGAGCCAG 62.705 72.222 0.00 0.00 0.00 4.85
480 508 2.960659 CGATCAGAGGCAGCAGCG 60.961 66.667 0.00 0.00 43.41 5.18
589 617 3.181439 CCCTTCTTATTCACATCTCCCCC 60.181 52.174 0.00 0.00 0.00 5.40
610 641 0.178973 TCCTCCACGTCTCTCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
611 642 0.038159 CCTCCACGTCTCTCACCAAC 60.038 60.000 0.00 0.00 0.00 3.77
612 643 0.962489 CTCCACGTCTCTCACCAACT 59.038 55.000 0.00 0.00 0.00 3.16
613 644 2.160205 CTCCACGTCTCTCACCAACTA 58.840 52.381 0.00 0.00 0.00 2.24
614 645 1.884579 TCCACGTCTCTCACCAACTAC 59.115 52.381 0.00 0.00 0.00 2.73
615 646 1.401148 CCACGTCTCTCACCAACTACG 60.401 57.143 0.00 0.00 36.48 3.51
616 647 0.879765 ACGTCTCTCACCAACTACGG 59.120 55.000 0.00 0.00 34.81 4.02
661 692 1.003233 GCTTCCCCGCCTCATATCC 60.003 63.158 0.00 0.00 0.00 2.59
682 713 2.402564 CCTCTTCCTTCTCCATAGCCA 58.597 52.381 0.00 0.00 0.00 4.75
683 714 2.368221 CCTCTTCCTTCTCCATAGCCAG 59.632 54.545 0.00 0.00 0.00 4.85
684 715 1.765314 TCTTCCTTCTCCATAGCCAGC 59.235 52.381 0.00 0.00 0.00 4.85
685 716 1.767681 CTTCCTTCTCCATAGCCAGCT 59.232 52.381 0.00 0.00 0.00 4.24
697 728 2.541233 AGCCAGCTTCTCTTCTCCTA 57.459 50.000 0.00 0.00 0.00 2.94
709 740 3.422796 TCTTCTCCTATCCAGTATCGCC 58.577 50.000 0.00 0.00 0.00 5.54
720 753 1.724929 GTATCGCCGTGTCGATCCG 60.725 63.158 7.55 0.00 44.97 4.18
738 771 4.806339 CCCCGCCCTCCTCTTCCT 62.806 72.222 0.00 0.00 0.00 3.36
739 772 3.157949 CCCGCCCTCCTCTTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
796 836 2.945456 TCCTCTTAGCTAGCCAATCGA 58.055 47.619 12.13 0.00 0.00 3.59
802 842 0.749649 AGCTAGCCAATCGACCTGAG 59.250 55.000 12.13 0.00 0.00 3.35
884 925 4.696402 AGACCATCGATCGTATCTAGGTTC 59.304 45.833 15.94 8.94 0.00 3.62
885 926 4.395625 ACCATCGATCGTATCTAGGTTCA 58.604 43.478 15.94 0.00 0.00 3.18
888 929 4.485024 TCGATCGTATCTAGGTTCAAGC 57.515 45.455 15.94 0.00 0.00 4.01
933 974 3.569916 GCTACGTGCATAGCTAGCA 57.430 52.632 18.83 12.13 43.62 3.49
1074 1119 4.568956 TCAAGGTATGTCACTCACACATG 58.431 43.478 0.00 0.00 38.04 3.21
1186 1236 2.350899 TGATTTGGCTTTGCGTGATG 57.649 45.000 0.00 0.00 0.00 3.07
1316 1368 2.798283 TGCTTTCGTTTTCCAGTCTACG 59.202 45.455 0.00 0.00 35.46 3.51
1317 1369 3.054878 GCTTTCGTTTTCCAGTCTACGA 58.945 45.455 0.00 0.00 40.80 3.43
1318 1370 3.678548 GCTTTCGTTTTCCAGTCTACGAT 59.321 43.478 0.00 0.00 41.90 3.73
1319 1371 4.434330 GCTTTCGTTTTCCAGTCTACGATG 60.434 45.833 0.00 0.00 41.90 3.84
1320 1372 3.226346 TCGTTTTCCAGTCTACGATGG 57.774 47.619 0.00 0.00 38.02 3.51
1323 1375 4.103357 CGTTTTCCAGTCTACGATGGTAG 58.897 47.826 8.50 8.50 46.16 3.18
1324 1376 4.380233 CGTTTTCCAGTCTACGATGGTAGT 60.380 45.833 13.78 0.00 45.22 2.73
1705 1798 8.318412 TGTAGTTTCATTGATAAGCTTAGTCCA 58.682 33.333 12.54 7.06 0.00 4.02
2445 2579 1.400494 GCGGAGAAACAACGGCATTAT 59.600 47.619 0.00 0.00 33.65 1.28
3081 3216 2.751259 TGATGGAAAGCAAGTGATCAGC 59.249 45.455 0.00 0.00 0.00 4.26
3210 3345 2.200373 TTGAGAAACCCTAGCTTGGC 57.800 50.000 8.91 0.00 0.00 4.52
3253 3395 1.152902 GGGACCATGCATGCAGCTA 60.153 57.895 26.69 1.47 45.94 3.32
3254 3396 1.450531 GGGACCATGCATGCAGCTAC 61.451 60.000 26.69 16.23 45.94 3.58
3255 3397 0.465097 GGACCATGCATGCAGCTACT 60.465 55.000 26.69 5.62 45.94 2.57
3810 3952 2.317149 CTGTCCTTCTCCGGGATGCC 62.317 65.000 0.00 0.00 35.15 4.40
4177 4319 0.043940 AGACCTCCATCAGCTCCCTT 59.956 55.000 0.00 0.00 0.00 3.95
4460 4602 3.476552 GATCGATGTTTGCATCCCCTTA 58.523 45.455 0.54 0.00 46.56 2.69
4461 4603 2.639065 TCGATGTTTGCATCCCCTTAC 58.361 47.619 0.00 0.00 46.56 2.34
4466 4608 2.959707 TGTTTGCATCCCCTTACGTTTT 59.040 40.909 0.00 0.00 0.00 2.43
4676 4915 5.200483 TCGATCAATTAAATTTGAGGCCCT 58.800 37.500 0.00 0.00 38.90 5.19
4677 4916 5.656416 TCGATCAATTAAATTTGAGGCCCTT 59.344 36.000 0.00 0.00 38.90 3.95
4678 4917 6.154363 TCGATCAATTAAATTTGAGGCCCTTT 59.846 34.615 0.00 0.00 38.90 3.11
4679 4918 6.818142 CGATCAATTAAATTTGAGGCCCTTTT 59.182 34.615 0.00 0.00 38.90 2.27
4680 4919 7.010460 CGATCAATTAAATTTGAGGCCCTTTTC 59.990 37.037 0.00 0.00 38.90 2.29
4681 4920 6.162777 TCAATTAAATTTGAGGCCCTTTTCG 58.837 36.000 0.00 0.00 32.07 3.46
4682 4921 2.455674 AAATTTGAGGCCCTTTTCGC 57.544 45.000 0.00 0.00 0.00 4.70
4683 4922 1.337118 AATTTGAGGCCCTTTTCGCA 58.663 45.000 0.00 0.00 0.00 5.10
4684 4923 1.337118 ATTTGAGGCCCTTTTCGCAA 58.663 45.000 0.00 0.00 0.00 4.85
4685 4924 1.115467 TTTGAGGCCCTTTTCGCAAA 58.885 45.000 0.00 0.00 32.06 3.68
4686 4925 1.115467 TTGAGGCCCTTTTCGCAAAA 58.885 45.000 0.00 0.00 0.00 2.44
4687 4926 1.115467 TGAGGCCCTTTTCGCAAAAA 58.885 45.000 0.00 0.00 33.42 1.94
4770 5109 8.588290 TTTGATACAAATTAACAGCCCTATGT 57.412 30.769 0.00 0.00 33.96 2.29
4783 5122 1.142465 CCCTATGTGCATCAGCTTCCT 59.858 52.381 0.00 0.00 42.74 3.36
4789 5128 3.159472 TGTGCATCAGCTTCCTTGAAAT 58.841 40.909 0.00 0.00 42.74 2.17
4823 5162 2.834549 CCAGAGCAGGAAGGAAGAAGTA 59.165 50.000 0.00 0.00 0.00 2.24
4865 6129 0.693049 CAGGGGCATCCATAGTACCC 59.307 60.000 0.00 0.00 40.05 3.69
4866 6130 0.836400 AGGGGCATCCATAGTACCCG 60.836 60.000 0.00 0.00 42.95 5.28
4867 6131 1.003718 GGGCATCCATAGTACCCGC 60.004 63.158 0.00 0.00 0.00 6.13
4868 6132 1.374252 GGCATCCATAGTACCCGCG 60.374 63.158 0.00 0.00 0.00 6.46
4869 6133 2.027625 GCATCCATAGTACCCGCGC 61.028 63.158 0.00 0.00 0.00 6.86
4870 6134 1.365999 CATCCATAGTACCCGCGCA 59.634 57.895 8.75 0.00 0.00 6.09
4871 6135 0.944311 CATCCATAGTACCCGCGCAC 60.944 60.000 8.75 0.00 0.00 5.34
4872 6136 2.095978 ATCCATAGTACCCGCGCACC 62.096 60.000 8.75 0.00 0.00 5.01
4873 6137 2.497293 CATAGTACCCGCGCACCA 59.503 61.111 8.75 0.00 0.00 4.17
4874 6138 1.069090 CATAGTACCCGCGCACCAT 59.931 57.895 8.75 0.00 0.00 3.55
4875 6139 1.069090 ATAGTACCCGCGCACCATG 59.931 57.895 8.75 0.00 0.00 3.66
4876 6140 1.682451 ATAGTACCCGCGCACCATGT 61.682 55.000 8.75 0.00 0.00 3.21
4877 6141 1.890625 TAGTACCCGCGCACCATGTT 61.891 55.000 8.75 0.00 0.00 2.71
4878 6142 2.032834 TACCCGCGCACCATGTTT 59.967 55.556 8.75 0.00 0.00 2.83
4879 6143 1.601197 TACCCGCGCACCATGTTTT 60.601 52.632 8.75 0.00 0.00 2.43
4880 6144 1.173444 TACCCGCGCACCATGTTTTT 61.173 50.000 8.75 0.00 0.00 1.94
4908 6172 3.520569 TGAAACAAGGCAAAAGACTTGC 58.479 40.909 10.80 0.78 46.03 4.01
4916 6180 2.535331 GCAAAAGACTTGCCGTTTTCA 58.465 42.857 0.00 0.00 39.38 2.69
4917 6181 3.123050 GCAAAAGACTTGCCGTTTTCAT 58.877 40.909 0.00 0.00 39.38 2.57
4918 6182 3.555547 GCAAAAGACTTGCCGTTTTCATT 59.444 39.130 0.00 0.00 39.38 2.57
4919 6183 4.550639 GCAAAAGACTTGCCGTTTTCATTG 60.551 41.667 0.00 0.00 39.38 2.82
4920 6184 4.647424 AAAGACTTGCCGTTTTCATTGA 57.353 36.364 0.00 0.00 0.00 2.57
4921 6185 4.853924 AAGACTTGCCGTTTTCATTGAT 57.146 36.364 0.00 0.00 0.00 2.57
4922 6186 4.853924 AGACTTGCCGTTTTCATTGATT 57.146 36.364 0.00 0.00 0.00 2.57
4923 6187 5.957842 AGACTTGCCGTTTTCATTGATTA 57.042 34.783 0.00 0.00 0.00 1.75
4924 6188 6.325919 AGACTTGCCGTTTTCATTGATTAA 57.674 33.333 0.00 0.00 0.00 1.40
4925 6189 6.381801 AGACTTGCCGTTTTCATTGATTAAG 58.618 36.000 0.00 0.00 0.00 1.85
4926 6190 6.206634 AGACTTGCCGTTTTCATTGATTAAGA 59.793 34.615 0.00 0.00 0.00 2.10
4927 6191 6.744112 ACTTGCCGTTTTCATTGATTAAGAA 58.256 32.000 0.00 0.00 0.00 2.52
4928 6192 6.863126 ACTTGCCGTTTTCATTGATTAAGAAG 59.137 34.615 0.00 0.00 0.00 2.85
4929 6193 6.567687 TGCCGTTTTCATTGATTAAGAAGA 57.432 33.333 0.00 0.00 0.00 2.87
4930 6194 6.976088 TGCCGTTTTCATTGATTAAGAAGAA 58.024 32.000 0.00 0.00 0.00 2.52
4931 6195 7.083858 TGCCGTTTTCATTGATTAAGAAGAAG 58.916 34.615 0.00 0.00 0.00 2.85
4932 6196 7.040755 TGCCGTTTTCATTGATTAAGAAGAAGA 60.041 33.333 0.00 0.00 0.00 2.87
4933 6197 7.483059 GCCGTTTTCATTGATTAAGAAGAAGAG 59.517 37.037 0.00 0.00 0.00 2.85
4934 6198 8.721478 CCGTTTTCATTGATTAAGAAGAAGAGA 58.279 33.333 0.00 0.00 0.00 3.10
4940 6204 8.680903 TCATTGATTAAGAAGAAGAGAATTGCC 58.319 33.333 0.00 0.00 0.00 4.52
4941 6205 6.668541 TGATTAAGAAGAAGAGAATTGCCG 57.331 37.500 0.00 0.00 0.00 5.69
4942 6206 5.586243 TGATTAAGAAGAAGAGAATTGCCGG 59.414 40.000 0.00 0.00 0.00 6.13
4943 6207 2.409948 AGAAGAAGAGAATTGCCGGG 57.590 50.000 2.18 0.00 0.00 5.73
4944 6208 1.630878 AGAAGAAGAGAATTGCCGGGT 59.369 47.619 2.18 0.00 0.00 5.28
4945 6209 2.040412 AGAAGAAGAGAATTGCCGGGTT 59.960 45.455 2.18 0.00 0.00 4.11
4946 6210 3.263425 AGAAGAAGAGAATTGCCGGGTTA 59.737 43.478 2.18 0.00 0.00 2.85
4947 6211 3.713826 AGAAGAGAATTGCCGGGTTAA 57.286 42.857 2.18 0.00 0.00 2.01
4948 6212 4.236527 AGAAGAGAATTGCCGGGTTAAT 57.763 40.909 2.18 0.00 0.00 1.40
4949 6213 4.600062 AGAAGAGAATTGCCGGGTTAATT 58.400 39.130 2.18 9.98 0.00 1.40
4950 6214 4.399303 AGAAGAGAATTGCCGGGTTAATTG 59.601 41.667 2.18 0.00 0.00 2.32
4951 6215 3.963129 AGAGAATTGCCGGGTTAATTGA 58.037 40.909 2.18 0.00 0.00 2.57
4952 6216 4.536765 AGAGAATTGCCGGGTTAATTGAT 58.463 39.130 2.18 5.15 0.00 2.57
4953 6217 5.690865 AGAGAATTGCCGGGTTAATTGATA 58.309 37.500 2.18 0.00 0.00 2.15
4954 6218 5.765182 AGAGAATTGCCGGGTTAATTGATAG 59.235 40.000 2.18 0.00 0.00 2.08
4955 6219 5.690865 AGAATTGCCGGGTTAATTGATAGA 58.309 37.500 2.18 0.00 0.00 1.98
4956 6220 6.126409 AGAATTGCCGGGTTAATTGATAGAA 58.874 36.000 2.18 0.00 0.00 2.10
4957 6221 6.605594 AGAATTGCCGGGTTAATTGATAGAAA 59.394 34.615 2.18 0.00 0.00 2.52
4958 6222 6.783708 ATTGCCGGGTTAATTGATAGAAAA 57.216 33.333 2.18 0.00 0.00 2.29
4959 6223 5.570234 TGCCGGGTTAATTGATAGAAAAC 57.430 39.130 2.18 0.00 0.00 2.43
4960 6224 4.399934 TGCCGGGTTAATTGATAGAAAACC 59.600 41.667 2.18 0.00 39.09 3.27
4962 6226 5.164606 CGGGTTAATTGATAGAAAACCGG 57.835 43.478 0.00 0.00 46.02 5.28
4963 6227 4.035909 CGGGTTAATTGATAGAAAACCGGG 59.964 45.833 6.32 0.00 46.02 5.73
4964 6228 4.202080 GGGTTAATTGATAGAAAACCGGGC 60.202 45.833 6.32 0.00 40.42 6.13
4965 6229 4.643334 GGTTAATTGATAGAAAACCGGGCT 59.357 41.667 6.32 0.00 31.09 5.19
4966 6230 5.824097 GGTTAATTGATAGAAAACCGGGCTA 59.176 40.000 6.32 1.97 31.09 3.93
4967 6231 6.319405 GGTTAATTGATAGAAAACCGGGCTAA 59.681 38.462 6.32 0.00 31.09 3.09
4968 6232 7.148035 GGTTAATTGATAGAAAACCGGGCTAAA 60.148 37.037 6.32 0.00 31.09 1.85
4969 6233 6.844097 AATTGATAGAAAACCGGGCTAAAA 57.156 33.333 6.32 2.27 0.00 1.52
4970 6234 5.632244 TTGATAGAAAACCGGGCTAAAAC 57.368 39.130 6.32 0.02 0.00 2.43
4971 6235 4.011698 TGATAGAAAACCGGGCTAAAACC 58.988 43.478 6.32 0.00 0.00 3.27
5050 7839 4.595781 TGTTCAAGTCTGGGGTAACTACAT 59.404 41.667 0.00 0.00 0.00 2.29
5116 7905 4.693283 TCGTAAGCAACCCTTATGAGATG 58.307 43.478 1.89 0.00 43.65 2.90
5190 7980 4.500375 GCTTGGCCATCCTAAATTGCTTAG 60.500 45.833 6.09 0.00 37.36 2.18
5195 7985 5.470437 GGCCATCCTAAATTGCTTAGTACTC 59.530 44.000 0.00 0.00 36.06 2.59
5223 8013 4.210537 CGTCCCATAATTATTGTCGTGGTC 59.789 45.833 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.461693 GTTGCAGCTGGAGCCTAGAG 60.462 60.000 17.12 0.00 43.38 2.43
10 11 0.906756 AGTTGCAGCTGGAGCCTAGA 60.907 55.000 18.18 0.00 43.38 2.43
27 28 2.159352 GGTGGTTGTTTGTTTGCGTAGT 60.159 45.455 0.00 0.00 0.00 2.73
200 204 2.104331 CCTACGGCTGGCTACGTG 59.896 66.667 0.00 0.00 43.93 4.49
224 228 6.222389 CCTTCATCTTCATGTTAGCCTCTAG 58.778 44.000 0.00 0.00 0.00 2.43
225 229 5.453903 GCCTTCATCTTCATGTTAGCCTCTA 60.454 44.000 0.00 0.00 0.00 2.43
228 232 3.549794 GCCTTCATCTTCATGTTAGCCT 58.450 45.455 0.00 0.00 0.00 4.58
229 233 2.620585 GGCCTTCATCTTCATGTTAGCC 59.379 50.000 0.00 0.00 34.44 3.93
231 235 2.289002 GCGGCCTTCATCTTCATGTTAG 59.711 50.000 0.00 0.00 0.00 2.34
232 236 2.288666 GCGGCCTTCATCTTCATGTTA 58.711 47.619 0.00 0.00 0.00 2.41
233 237 1.098050 GCGGCCTTCATCTTCATGTT 58.902 50.000 0.00 0.00 0.00 2.71
425 443 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
427 445 3.556306 CTCGGTGGTGGTGGTGGT 61.556 66.667 0.00 0.00 0.00 4.16
480 508 1.221021 GGTGTGGGTAGGCTACTGC 59.779 63.158 23.01 13.82 38.76 4.40
589 617 1.316706 GGTGAGAGACGTGGAGGAGG 61.317 65.000 0.00 0.00 0.00 4.30
590 618 0.609406 TGGTGAGAGACGTGGAGGAG 60.609 60.000 0.00 0.00 0.00 3.69
591 619 0.178973 TTGGTGAGAGACGTGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
610 641 2.363683 GTGCTACTGGTAGTCCGTAGT 58.636 52.381 9.16 0.00 39.99 2.73
611 642 1.674962 GGTGCTACTGGTAGTCCGTAG 59.325 57.143 9.16 0.00 40.37 3.51
612 643 1.755179 GGTGCTACTGGTAGTCCGTA 58.245 55.000 9.16 0.00 35.65 4.02
613 644 1.310933 CGGTGCTACTGGTAGTCCGT 61.311 60.000 23.40 0.00 42.06 4.69
614 645 1.432251 CGGTGCTACTGGTAGTCCG 59.568 63.158 20.95 20.95 41.69 4.79
615 646 1.141234 GCGGTGCTACTGGTAGTCC 59.859 63.158 9.16 10.31 35.65 3.85
616 647 0.179134 CTGCGGTGCTACTGGTAGTC 60.179 60.000 9.16 3.37 35.65 2.59
661 692 1.696884 GGCTATGGAGAAGGAAGAGGG 59.303 57.143 0.00 0.00 0.00 4.30
682 713 4.264373 ACTGGATAGGAGAAGAGAAGCT 57.736 45.455 0.00 0.00 0.00 3.74
683 714 5.106317 CGATACTGGATAGGAGAAGAGAAGC 60.106 48.000 0.00 0.00 0.00 3.86
684 715 5.106317 GCGATACTGGATAGGAGAAGAGAAG 60.106 48.000 0.00 0.00 0.00 2.85
685 716 4.762765 GCGATACTGGATAGGAGAAGAGAA 59.237 45.833 0.00 0.00 0.00 2.87
697 728 1.099295 TCGACACGGCGATACTGGAT 61.099 55.000 16.62 0.00 35.01 3.41
737 770 5.596836 AGCTAGGAAGAACATGAAGAGAG 57.403 43.478 0.00 0.00 0.00 3.20
738 771 7.469318 CGATTAGCTAGGAAGAACATGAAGAGA 60.469 40.741 0.00 0.00 0.00 3.10
739 772 6.640499 CGATTAGCTAGGAAGAACATGAAGAG 59.360 42.308 0.00 0.00 0.00 2.85
775 811 3.257127 GTCGATTGGCTAGCTAAGAGGAT 59.743 47.826 18.87 1.49 0.00 3.24
796 836 1.111116 TTTGTCGACGGGTCTCAGGT 61.111 55.000 11.62 0.00 0.00 4.00
802 842 1.981254 TCGTTATTTGTCGACGGGTC 58.019 50.000 11.62 0.00 37.39 4.46
844 885 0.758734 TCTACACCTGCTGCACACTT 59.241 50.000 0.00 0.00 0.00 3.16
845 886 0.034059 GTCTACACCTGCTGCACACT 59.966 55.000 0.00 0.00 0.00 3.55
854 895 1.676529 ACGATCGATGGTCTACACCTG 59.323 52.381 24.34 0.00 44.17 4.00
888 929 0.106335 AATCCGAGATCCAGCAGCAG 59.894 55.000 0.00 0.00 0.00 4.24
933 974 2.282040 GCAACCTCACTGCCAGCT 60.282 61.111 0.00 0.00 33.51 4.24
1074 1119 5.924475 AATTACAAGCACGATAGGTATGC 57.076 39.130 0.00 0.00 43.77 3.14
1186 1236 4.455877 AGGAGATGGACAAAAATCACGTTC 59.544 41.667 0.00 0.00 0.00 3.95
1316 1368 8.037758 AGCAAGCAATCTACATATACTACCATC 58.962 37.037 0.00 0.00 0.00 3.51
1317 1369 7.911651 AGCAAGCAATCTACATATACTACCAT 58.088 34.615 0.00 0.00 0.00 3.55
1318 1370 7.303182 AGCAAGCAATCTACATATACTACCA 57.697 36.000 0.00 0.00 0.00 3.25
1319 1371 6.528423 CGAGCAAGCAATCTACATATACTACC 59.472 42.308 0.00 0.00 0.00 3.18
1320 1372 7.061210 CACGAGCAAGCAATCTACATATACTAC 59.939 40.741 0.00 0.00 0.00 2.73
1323 1375 5.692204 ACACGAGCAAGCAATCTACATATAC 59.308 40.000 0.00 0.00 0.00 1.47
1324 1376 5.842907 ACACGAGCAAGCAATCTACATATA 58.157 37.500 0.00 0.00 0.00 0.86
2226 2360 4.226761 CAGTTTCTTAAAATGGACACGCC 58.773 43.478 0.00 0.00 33.17 5.68
2445 2579 0.179073 GCTAAATCTGCCTCCGCTCA 60.179 55.000 0.00 0.00 35.36 4.26
3081 3216 7.325660 TGGTATACGTACTTTTAGACTCAGG 57.674 40.000 0.00 0.00 0.00 3.86
3177 3312 4.341235 GGTTTCTCAAAGGGTAAAGCTTGT 59.659 41.667 0.00 0.00 0.00 3.16
3210 3345 3.436924 TCGCAAGCTGCATGCAGG 61.437 61.111 40.59 28.14 45.36 4.85
3253 3395 0.322008 GTCTTGGCCAAGCTGCTAGT 60.322 55.000 36.24 0.00 38.28 2.57
3254 3396 1.364626 CGTCTTGGCCAAGCTGCTAG 61.365 60.000 36.24 19.97 38.28 3.42
3255 3397 1.375908 CGTCTTGGCCAAGCTGCTA 60.376 57.895 36.24 19.17 38.28 3.49
4036 4178 2.975799 GCGCCACCAAACGGAAGA 60.976 61.111 0.00 0.00 0.00 2.87
4480 4624 4.344104 ACACTTGAAACATAAGGGGATGG 58.656 43.478 0.00 0.00 32.86 3.51
4689 4928 9.806448 ACTTTTGGGCCTCAAATTTATTTTTAT 57.194 25.926 16.90 0.00 43.95 1.40
4690 4929 9.278978 GACTTTTGGGCCTCAAATTTATTTTTA 57.721 29.630 16.90 2.45 43.95 1.52
4691 4930 7.777440 TGACTTTTGGGCCTCAAATTTATTTTT 59.223 29.630 16.90 0.88 43.95 1.94
4692 4931 7.286313 TGACTTTTGGGCCTCAAATTTATTTT 58.714 30.769 16.90 1.66 43.95 1.82
4693 4932 6.836242 TGACTTTTGGGCCTCAAATTTATTT 58.164 32.000 16.90 2.72 43.95 1.40
4694 4933 6.432403 TGACTTTTGGGCCTCAAATTTATT 57.568 33.333 16.90 1.46 43.95 1.40
4695 4934 6.269769 TCTTGACTTTTGGGCCTCAAATTTAT 59.730 34.615 16.90 6.33 43.95 1.40
4696 4935 5.600484 TCTTGACTTTTGGGCCTCAAATTTA 59.400 36.000 16.90 5.26 43.95 1.40
4697 4936 4.408596 TCTTGACTTTTGGGCCTCAAATTT 59.591 37.500 16.90 9.23 43.95 1.82
4698 4937 3.966665 TCTTGACTTTTGGGCCTCAAATT 59.033 39.130 16.90 9.51 43.95 1.82
4699 4938 3.575805 TCTTGACTTTTGGGCCTCAAAT 58.424 40.909 16.90 6.42 43.95 2.32
4700 4939 3.025322 TCTTGACTTTTGGGCCTCAAA 57.975 42.857 13.46 13.46 42.98 2.69
4701 4940 2.746279 TCTTGACTTTTGGGCCTCAA 57.254 45.000 4.53 4.95 0.00 3.02
4702 4941 2.978156 ATCTTGACTTTTGGGCCTCA 57.022 45.000 4.53 0.00 0.00 3.86
4703 4942 2.493675 GGAATCTTGACTTTTGGGCCTC 59.506 50.000 4.53 0.00 0.00 4.70
4704 4943 2.158325 TGGAATCTTGACTTTTGGGCCT 60.158 45.455 4.53 0.00 0.00 5.19
4705 4944 2.247358 TGGAATCTTGACTTTTGGGCC 58.753 47.619 0.00 0.00 0.00 5.80
4706 4945 4.541973 ATTGGAATCTTGACTTTTGGGC 57.458 40.909 0.00 0.00 0.00 5.36
4707 4946 6.588719 TGTATTGGAATCTTGACTTTTGGG 57.411 37.500 0.00 0.00 0.00 4.12
4708 4947 6.587608 GCTTGTATTGGAATCTTGACTTTTGG 59.412 38.462 0.00 0.00 0.00 3.28
4709 4948 6.587608 GGCTTGTATTGGAATCTTGACTTTTG 59.412 38.462 0.00 0.00 0.00 2.44
4710 4949 6.267471 TGGCTTGTATTGGAATCTTGACTTTT 59.733 34.615 0.00 0.00 0.00 2.27
4770 5109 3.575256 ACAATTTCAAGGAAGCTGATGCA 59.425 39.130 0.00 0.00 42.74 3.96
4783 5122 4.952957 TCTGGTGTTCCAAGACAATTTCAA 59.047 37.500 0.00 0.00 43.81 2.69
4789 5128 1.211703 TGCTCTGGTGTTCCAAGACAA 59.788 47.619 0.00 0.00 43.81 3.18
4823 5162 2.110578 GCCACCCAAGGAAATTAGCAT 58.889 47.619 0.00 0.00 0.00 3.79
4853 6117 1.366366 GTGCGCGGGTACTATGGAT 59.634 57.895 13.38 0.00 0.00 3.41
4883 6147 6.567511 GCAAGTCTTTTGCCTTGTTTCAAAAA 60.568 34.615 0.54 0.00 40.36 1.94
4884 6148 5.106752 GCAAGTCTTTTGCCTTGTTTCAAAA 60.107 36.000 0.54 0.00 40.13 2.44
4885 6149 4.391523 GCAAGTCTTTTGCCTTGTTTCAAA 59.608 37.500 0.54 0.00 40.13 2.69
4886 6150 3.932089 GCAAGTCTTTTGCCTTGTTTCAA 59.068 39.130 0.54 0.00 40.13 2.69
4887 6151 3.520569 GCAAGTCTTTTGCCTTGTTTCA 58.479 40.909 0.54 0.00 40.13 2.69
4896 6160 2.535331 TGAAAACGGCAAGTCTTTTGC 58.465 42.857 3.39 3.39 44.22 3.68
4897 6161 4.803088 TCAATGAAAACGGCAAGTCTTTTG 59.197 37.500 0.00 0.00 0.00 2.44
4898 6162 5.004922 TCAATGAAAACGGCAAGTCTTTT 57.995 34.783 0.00 0.00 0.00 2.27
4899 6163 4.647424 TCAATGAAAACGGCAAGTCTTT 57.353 36.364 0.00 0.00 0.00 2.52
4900 6164 4.853924 ATCAATGAAAACGGCAAGTCTT 57.146 36.364 0.00 0.00 0.00 3.01
4901 6165 4.853924 AATCAATGAAAACGGCAAGTCT 57.146 36.364 0.00 0.00 0.00 3.24
4902 6166 6.378582 TCTTAATCAATGAAAACGGCAAGTC 58.621 36.000 0.00 0.00 0.00 3.01
4903 6167 6.325919 TCTTAATCAATGAAAACGGCAAGT 57.674 33.333 0.00 0.00 0.00 3.16
4904 6168 7.083858 TCTTCTTAATCAATGAAAACGGCAAG 58.916 34.615 0.00 0.00 0.00 4.01
4905 6169 6.976088 TCTTCTTAATCAATGAAAACGGCAA 58.024 32.000 0.00 0.00 0.00 4.52
4906 6170 6.567687 TCTTCTTAATCAATGAAAACGGCA 57.432 33.333 0.00 0.00 0.00 5.69
4907 6171 7.305474 TCTTCTTCTTAATCAATGAAAACGGC 58.695 34.615 0.00 0.00 0.00 5.68
4908 6172 8.721478 TCTCTTCTTCTTAATCAATGAAAACGG 58.279 33.333 0.00 0.00 0.00 4.44
4914 6178 8.680903 GGCAATTCTCTTCTTCTTAATCAATGA 58.319 33.333 0.00 0.00 0.00 2.57
4915 6179 7.642978 CGGCAATTCTCTTCTTCTTAATCAATG 59.357 37.037 0.00 0.00 0.00 2.82
4916 6180 7.201767 CCGGCAATTCTCTTCTTCTTAATCAAT 60.202 37.037 0.00 0.00 0.00 2.57
4917 6181 6.094048 CCGGCAATTCTCTTCTTCTTAATCAA 59.906 38.462 0.00 0.00 0.00 2.57
4918 6182 5.586243 CCGGCAATTCTCTTCTTCTTAATCA 59.414 40.000 0.00 0.00 0.00 2.57
4919 6183 5.008118 CCCGGCAATTCTCTTCTTCTTAATC 59.992 44.000 0.00 0.00 0.00 1.75
4920 6184 4.884164 CCCGGCAATTCTCTTCTTCTTAAT 59.116 41.667 0.00 0.00 0.00 1.40
4921 6185 4.261801 CCCGGCAATTCTCTTCTTCTTAA 58.738 43.478 0.00 0.00 0.00 1.85
4922 6186 3.263425 ACCCGGCAATTCTCTTCTTCTTA 59.737 43.478 0.00 0.00 0.00 2.10
4923 6187 2.040412 ACCCGGCAATTCTCTTCTTCTT 59.960 45.455 0.00 0.00 0.00 2.52
4924 6188 1.630878 ACCCGGCAATTCTCTTCTTCT 59.369 47.619 0.00 0.00 0.00 2.85
4925 6189 2.115343 ACCCGGCAATTCTCTTCTTC 57.885 50.000 0.00 0.00 0.00 2.87
4926 6190 2.586648 AACCCGGCAATTCTCTTCTT 57.413 45.000 0.00 0.00 0.00 2.52
4927 6191 3.713826 TTAACCCGGCAATTCTCTTCT 57.286 42.857 0.00 0.00 0.00 2.85
4928 6192 4.398044 TCAATTAACCCGGCAATTCTCTTC 59.602 41.667 0.00 0.00 0.00 2.87
4929 6193 4.340617 TCAATTAACCCGGCAATTCTCTT 58.659 39.130 0.00 0.00 0.00 2.85
4930 6194 3.963129 TCAATTAACCCGGCAATTCTCT 58.037 40.909 0.00 0.00 0.00 3.10
4931 6195 4.918810 ATCAATTAACCCGGCAATTCTC 57.081 40.909 0.00 0.00 0.00 2.87
4932 6196 5.690865 TCTATCAATTAACCCGGCAATTCT 58.309 37.500 0.00 0.00 0.00 2.40
4933 6197 6.385649 TTCTATCAATTAACCCGGCAATTC 57.614 37.500 0.00 0.00 0.00 2.17
4934 6198 6.783708 TTTCTATCAATTAACCCGGCAATT 57.216 33.333 0.00 0.00 0.00 2.32
4935 6199 6.406512 GGTTTTCTATCAATTAACCCGGCAAT 60.407 38.462 0.00 0.00 33.72 3.56
4936 6200 5.105675 GGTTTTCTATCAATTAACCCGGCAA 60.106 40.000 0.00 0.00 33.72 4.52
4937 6201 4.399934 GGTTTTCTATCAATTAACCCGGCA 59.600 41.667 0.00 0.00 33.72 5.69
4938 6202 4.496840 CGGTTTTCTATCAATTAACCCGGC 60.497 45.833 0.00 0.00 35.87 6.13
4939 6203 4.035909 CCGGTTTTCTATCAATTAACCCGG 59.964 45.833 0.00 0.00 35.87 5.73
4940 6204 4.035909 CCCGGTTTTCTATCAATTAACCCG 59.964 45.833 0.00 0.00 35.87 5.28
4941 6205 4.202080 GCCCGGTTTTCTATCAATTAACCC 60.202 45.833 0.00 0.00 35.87 4.11
4942 6206 4.643334 AGCCCGGTTTTCTATCAATTAACC 59.357 41.667 0.00 0.00 35.91 2.85
4943 6207 5.830000 AGCCCGGTTTTCTATCAATTAAC 57.170 39.130 0.00 0.00 0.00 2.01
4944 6208 7.941431 TTTAGCCCGGTTTTCTATCAATTAA 57.059 32.000 0.00 0.00 0.00 1.40
4945 6209 7.148035 GGTTTTAGCCCGGTTTTCTATCAATTA 60.148 37.037 0.00 0.00 0.00 1.40
4946 6210 6.350696 GGTTTTAGCCCGGTTTTCTATCAATT 60.351 38.462 0.00 0.00 0.00 2.32
4947 6211 5.126545 GGTTTTAGCCCGGTTTTCTATCAAT 59.873 40.000 0.00 0.00 0.00 2.57
4948 6212 4.460034 GGTTTTAGCCCGGTTTTCTATCAA 59.540 41.667 0.00 0.00 0.00 2.57
4949 6213 4.011698 GGTTTTAGCCCGGTTTTCTATCA 58.988 43.478 0.00 0.00 0.00 2.15
4950 6214 3.064408 CGGTTTTAGCCCGGTTTTCTATC 59.936 47.826 0.00 0.00 41.78 2.08
4951 6215 3.011818 CGGTTTTAGCCCGGTTTTCTAT 58.988 45.455 0.00 0.00 41.78 1.98
4952 6216 2.038295 TCGGTTTTAGCCCGGTTTTCTA 59.962 45.455 0.00 0.00 45.51 2.10
4953 6217 1.202794 TCGGTTTTAGCCCGGTTTTCT 60.203 47.619 0.00 0.00 45.51 2.52
4954 6218 1.237533 TCGGTTTTAGCCCGGTTTTC 58.762 50.000 0.00 0.00 45.51 2.29
4955 6219 1.542472 CATCGGTTTTAGCCCGGTTTT 59.458 47.619 0.00 0.00 45.51 2.43
4956 6220 1.170442 CATCGGTTTTAGCCCGGTTT 58.830 50.000 0.00 0.00 45.51 3.27
4957 6221 1.310216 GCATCGGTTTTAGCCCGGTT 61.310 55.000 0.00 0.00 45.51 4.44
4958 6222 1.747745 GCATCGGTTTTAGCCCGGT 60.748 57.895 0.00 0.00 45.51 5.28
4959 6223 2.819552 CGCATCGGTTTTAGCCCGG 61.820 63.158 0.00 0.00 45.51 5.73
4960 6224 2.707039 CGCATCGGTTTTAGCCCG 59.293 61.111 0.00 0.00 46.83 6.13
4961 6225 2.403378 TGCGCATCGGTTTTAGCCC 61.403 57.895 5.66 0.00 0.00 5.19
4962 6226 1.226295 GTGCGCATCGGTTTTAGCC 60.226 57.895 15.91 0.00 0.00 3.93
4963 6227 1.226295 GGTGCGCATCGGTTTTAGC 60.226 57.895 15.91 0.00 0.00 3.09
4964 6228 0.732571 ATGGTGCGCATCGGTTTTAG 59.267 50.000 15.91 0.00 0.00 1.85
4965 6229 0.449786 CATGGTGCGCATCGGTTTTA 59.550 50.000 15.91 0.00 0.00 1.52
4966 6230 1.212490 CATGGTGCGCATCGGTTTT 59.788 52.632 15.91 0.00 0.00 2.43
4967 6231 1.523154 AACATGGTGCGCATCGGTTT 61.523 50.000 20.71 9.23 0.00 3.27
4968 6232 1.523154 AAACATGGTGCGCATCGGTT 61.523 50.000 20.71 20.71 0.00 4.44
4969 6233 1.971167 AAACATGGTGCGCATCGGT 60.971 52.632 15.91 13.28 0.00 4.69
4970 6234 1.514657 CAAACATGGTGCGCATCGG 60.515 57.895 15.91 12.50 0.00 4.18
4971 6235 0.445829 TACAAACATGGTGCGCATCG 59.554 50.000 15.91 3.07 0.00 3.84
4972 6236 1.737236 TCTACAAACATGGTGCGCATC 59.263 47.619 15.91 15.63 0.00 3.91
4973 6237 1.819928 TCTACAAACATGGTGCGCAT 58.180 45.000 15.91 0.00 0.00 4.73
4974 6238 1.819928 ATCTACAAACATGGTGCGCA 58.180 45.000 5.66 5.66 0.00 6.09
5050 7839 3.126171 GTGCATGTTACGGCTTGACATTA 59.874 43.478 0.00 0.00 32.01 1.90
5116 7905 0.819259 TGTCAAGAGCCACACAAGCC 60.819 55.000 0.00 0.00 0.00 4.35
5190 7980 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
5195 7985 4.324267 GACAATAATTATGGGACGGAGGG 58.676 47.826 4.84 0.00 0.00 4.30
5223 8013 7.607991 ACACATACTCCCTCAATTTGAACTAAG 59.392 37.037 0.01 0.00 0.00 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.