Multiple sequence alignment - TraesCS6D01G254000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G254000 chr6D 100.000 5970 0 0 1 5970 358230162 358224193 0.000000e+00 11025.0
1 TraesCS6D01G254000 chr6D 91.045 134 8 4 996 1125 358224380 358224247 1.710000e-40 178.0
2 TraesCS6D01G254000 chr6B 94.682 3366 139 12 1999 5341 539628207 539624859 0.000000e+00 5188.0
3 TraesCS6D01G254000 chr6B 91.635 1327 77 16 617 1929 539629560 539628254 0.000000e+00 1805.0
4 TraesCS6D01G254000 chr6B 95.372 497 20 3 5472 5968 539624843 539624350 0.000000e+00 787.0
5 TraesCS6D01G254000 chr6B 90.625 128 9 3 1001 1125 539624529 539624402 3.700000e-37 167.0
6 TraesCS6D01G254000 chr6B 86.861 137 12 6 180 311 370181474 370181609 1.340000e-31 148.0
7 TraesCS6D01G254000 chr6A 88.038 1580 132 23 3775 5341 499794292 499795827 0.000000e+00 1818.0
8 TraesCS6D01G254000 chr6A 90.909 1265 66 14 677 1921 499791052 499792287 0.000000e+00 1653.0
9 TraesCS6D01G254000 chr6A 93.922 872 35 13 2547 3408 499793010 499793873 0.000000e+00 1301.0
10 TraesCS6D01G254000 chr6A 91.700 506 18 12 5472 5968 499795848 499796338 0.000000e+00 680.0
11 TraesCS6D01G254000 chr6A 96.333 300 10 1 2144 2443 499792575 499792873 5.380000e-135 492.0
12 TraesCS6D01G254000 chr6A 91.473 129 8 3 1000 1125 499796158 499796286 2.210000e-39 174.0
13 TraesCS6D01G254000 chr6A 90.541 74 7 0 2471 2544 189573560 189573487 1.370000e-16 99.0
14 TraesCS6D01G254000 chr7D 94.262 244 13 1 324 566 427155920 427156163 7.310000e-99 372.0
15 TraesCS6D01G254000 chr2A 93.548 248 14 2 323 568 544306317 544306564 9.450000e-98 368.0
16 TraesCS6D01G254000 chr2A 85.235 149 18 3 178 324 166758247 166758393 3.730000e-32 150.0
17 TraesCS6D01G254000 chr2A 90.541 74 7 0 2471 2544 186436390 186436463 1.370000e-16 99.0
18 TraesCS6D01G254000 chr5D 93.852 244 14 1 324 566 111709356 111709113 3.400000e-97 366.0
19 TraesCS6D01G254000 chr5D 93.173 249 16 1 321 568 359105621 359105869 1.220000e-96 364.0
20 TraesCS6D01G254000 chr2D 93.548 248 12 3 323 569 106811527 106811771 3.400000e-97 366.0
21 TraesCS6D01G254000 chr2D 93.548 248 12 3 323 569 106814646 106814890 3.400000e-97 366.0
22 TraesCS6D01G254000 chr2B 93.522 247 13 3 323 568 356792913 356793157 1.220000e-96 364.0
23 TraesCS6D01G254000 chr2B 86.861 137 12 6 180 311 758226799 758226664 1.340000e-31 148.0
24 TraesCS6D01G254000 chr2B 94.595 74 4 0 2470 2543 89705377 89705450 1.360000e-21 115.0
25 TraesCS6D01G254000 chr4D 93.117 247 16 1 323 568 114381259 114381013 1.580000e-95 361.0
26 TraesCS6D01G254000 chr4D 85.526 76 11 0 1 76 431025868 431025943 4.960000e-11 80.5
27 TraesCS6D01G254000 chr4D 92.727 55 4 0 5402 5456 443834979 443834925 4.960000e-11 80.5
28 TraesCS6D01G254000 chr4A 91.473 258 20 2 311 566 150384029 150384286 2.650000e-93 353.0
29 TraesCS6D01G254000 chr3D 85.906 149 17 4 181 328 334169895 334169750 8.010000e-34 156.0
30 TraesCS6D01G254000 chr3B 85.906 149 17 4 181 328 433578749 433578604 8.010000e-34 156.0
31 TraesCS6D01G254000 chr3B 87.879 132 13 3 192 322 502063565 502063436 1.040000e-32 152.0
32 TraesCS6D01G254000 chr3B 84.564 149 19 4 181 328 368104915 368105060 1.730000e-30 145.0
33 TraesCS6D01G254000 chr7A 85.235 149 17 5 178 324 719473971 719474116 1.340000e-31 148.0
34 TraesCS6D01G254000 chr7A 90.476 84 5 3 2462 2544 643081799 643081880 2.280000e-19 108.0
35 TraesCS6D01G254000 chr7A 92.105 76 6 0 2469 2544 643081904 643081829 2.280000e-19 108.0
36 TraesCS6D01G254000 chr7A 90.541 74 7 0 2471 2544 158291424 158291497 1.370000e-16 99.0
37 TraesCS6D01G254000 chr7A 90.541 74 7 0 2471 2544 668558747 668558674 1.370000e-16 99.0
38 TraesCS6D01G254000 chr4B 86.861 137 12 6 180 311 206101459 206101324 1.340000e-31 148.0
39 TraesCS6D01G254000 chr5B 89.333 75 8 0 2470 2544 419842504 419842430 1.770000e-15 95.3
40 TraesCS6D01G254000 chr5B 87.931 58 7 0 12 69 386337891 386337834 1.070000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G254000 chr6D 358224193 358230162 5969 True 11025.000000 11025 100.0000 1 5970 1 chr6D.!!$R1 5969
1 TraesCS6D01G254000 chr6B 539624350 539629560 5210 True 1986.750000 5188 93.0785 617 5968 4 chr6B.!!$R1 5351
2 TraesCS6D01G254000 chr6A 499791052 499796338 5286 False 1019.666667 1818 92.0625 677 5968 6 chr6A.!!$F1 5291
3 TraesCS6D01G254000 chr2D 106811527 106814890 3363 False 366.000000 366 93.5480 323 569 2 chr2D.!!$F1 246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.038251 TGCGCTTCCTATGCTATCCG 60.038 55.000 9.73 0.00 0.00 4.18 F
617 619 0.169672 TCTAGAACTACGCGCACACC 59.830 55.000 5.73 0.00 0.00 4.16 F
621 623 0.179119 GAACTACGCGCACACCCTAT 60.179 55.000 5.73 0.00 0.00 2.57 F
1944 2035 0.036388 ACACCACCTAGCATTCCACG 60.036 55.000 0.00 0.00 0.00 4.94 F
1980 2071 0.110192 CTCGGTCCGAAAAAGCTTGC 60.110 55.000 16.23 0.00 34.74 4.01 F
1988 2079 0.831711 GAAAAAGCTTGCCCCTGGGA 60.832 55.000 16.20 0.00 37.50 4.37 F
1989 2080 1.121407 AAAAAGCTTGCCCCTGGGAC 61.121 55.000 16.20 2.06 37.50 4.46 F
3509 5263 1.274184 TGCTTGGGAGTATGGGGTAGT 60.274 52.381 0.00 0.00 0.00 2.73 F
4369 6621 0.990374 AGCTGCTGATGGAGAAAGGT 59.010 50.000 0.00 0.00 33.10 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1733 0.037232 ACTGGTTTGCCGCTAGAGAC 60.037 55.000 0.00 0.00 37.67 3.36 R
1704 1734 0.037326 CACTGGTTTGCCGCTAGAGA 60.037 55.000 0.00 0.00 37.67 3.10 R
1961 2052 0.110192 GCAAGCTTTTTCGGACCGAG 60.110 55.000 17.51 6.59 37.14 4.63 R
3468 5222 0.470341 GGAACCTCTATCAGCCACCC 59.530 60.000 0.00 0.00 0.00 4.61 R
3594 5348 3.253432 CCCAGTTAGTTCTTTGCCAGTTC 59.747 47.826 0.00 0.00 0.00 3.01 R
3773 6022 5.615289 ACTTGCTTCAATACAACTCTCAGT 58.385 37.500 0.00 0.00 0.00 3.41 R
4162 6412 4.995124 TCGCTAGACTATTCAAACTGGAC 58.005 43.478 0.00 0.00 0.00 4.02 R
4465 6717 0.027194 CATGCTCAAGCCGTCGAATG 59.973 55.000 0.00 0.00 41.18 2.67 R
5421 7701 0.167251 GCCAAACACCGATACAACCG 59.833 55.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.529780 TGGGACAAAATGCTGCAAAG 57.470 45.000 6.36 0.00 31.92 2.77
28 29 1.761784 TGGGACAAAATGCTGCAAAGT 59.238 42.857 6.36 2.71 31.92 2.66
29 30 2.224018 TGGGACAAAATGCTGCAAAGTC 60.224 45.455 6.36 11.86 31.92 3.01
30 31 2.053627 GGACAAAATGCTGCAAAGTCG 58.946 47.619 6.36 0.00 0.00 4.18
31 32 2.287547 GGACAAAATGCTGCAAAGTCGA 60.288 45.455 6.36 0.00 0.00 4.20
32 33 2.721090 GACAAAATGCTGCAAAGTCGAC 59.279 45.455 7.70 7.70 0.00 4.20
33 34 2.358898 ACAAAATGCTGCAAAGTCGACT 59.641 40.909 13.58 13.58 0.00 4.18
34 35 2.693797 AAATGCTGCAAAGTCGACTG 57.306 45.000 20.85 9.82 0.00 3.51
35 36 1.882912 AATGCTGCAAAGTCGACTGA 58.117 45.000 20.85 2.74 0.00 3.41
36 37 1.436600 ATGCTGCAAAGTCGACTGAG 58.563 50.000 20.85 15.59 0.00 3.35
37 38 0.389025 TGCTGCAAAGTCGACTGAGA 59.611 50.000 20.85 2.73 0.00 3.27
38 39 0.787183 GCTGCAAAGTCGACTGAGAC 59.213 55.000 20.85 9.86 41.23 3.36
50 51 6.154451 GTCGACTGAGACTTTGTTAAATCC 57.846 41.667 8.70 0.00 38.09 3.01
51 52 5.120363 GTCGACTGAGACTTTGTTAAATCCC 59.880 44.000 8.70 0.00 38.09 3.85
52 53 4.994852 CGACTGAGACTTTGTTAAATCCCA 59.005 41.667 0.00 0.00 0.00 4.37
53 54 5.120830 CGACTGAGACTTTGTTAAATCCCAG 59.879 44.000 0.00 0.00 0.00 4.45
54 55 5.941788 ACTGAGACTTTGTTAAATCCCAGT 58.058 37.500 0.00 0.00 0.00 4.00
55 56 5.998363 ACTGAGACTTTGTTAAATCCCAGTC 59.002 40.000 0.00 0.00 0.00 3.51
56 57 4.994852 TGAGACTTTGTTAAATCCCAGTCG 59.005 41.667 0.00 0.00 36.56 4.18
57 58 5.221561 TGAGACTTTGTTAAATCCCAGTCGA 60.222 40.000 0.00 0.00 36.56 4.20
58 59 4.995487 AGACTTTGTTAAATCCCAGTCGAC 59.005 41.667 7.70 7.70 36.56 4.20
59 60 4.070009 ACTTTGTTAAATCCCAGTCGACC 58.930 43.478 13.01 0.00 0.00 4.79
60 61 2.373540 TGTTAAATCCCAGTCGACCG 57.626 50.000 13.01 0.70 0.00 4.79
61 62 1.894466 TGTTAAATCCCAGTCGACCGA 59.106 47.619 13.01 5.97 0.00 4.69
62 63 2.094390 TGTTAAATCCCAGTCGACCGAG 60.094 50.000 13.01 2.37 0.00 4.63
63 64 1.843368 TAAATCCCAGTCGACCGAGT 58.157 50.000 13.01 1.77 0.00 4.18
64 65 0.974383 AAATCCCAGTCGACCGAGTT 59.026 50.000 13.01 8.26 0.00 3.01
65 66 0.974383 AATCCCAGTCGACCGAGTTT 59.026 50.000 13.01 0.00 0.00 2.66
66 67 0.974383 ATCCCAGTCGACCGAGTTTT 59.026 50.000 13.01 0.00 0.00 2.43
67 68 1.619654 TCCCAGTCGACCGAGTTTTA 58.380 50.000 13.01 0.00 0.00 1.52
68 69 1.542915 TCCCAGTCGACCGAGTTTTAG 59.457 52.381 13.01 0.00 0.00 1.85
69 70 1.347320 CCAGTCGACCGAGTTTTAGC 58.653 55.000 13.01 0.00 0.00 3.09
70 71 1.336517 CCAGTCGACCGAGTTTTAGCA 60.337 52.381 13.01 0.00 0.00 3.49
71 72 2.400399 CAGTCGACCGAGTTTTAGCAA 58.600 47.619 13.01 0.00 0.00 3.91
72 73 2.798283 CAGTCGACCGAGTTTTAGCAAA 59.202 45.455 13.01 0.00 0.00 3.68
73 74 2.798847 AGTCGACCGAGTTTTAGCAAAC 59.201 45.455 13.01 0.00 42.48 2.93
74 75 2.096565 GTCGACCGAGTTTTAGCAAACC 60.097 50.000 3.51 0.00 43.08 3.27
75 76 1.196127 CGACCGAGTTTTAGCAAACCC 59.804 52.381 0.00 0.00 43.08 4.11
76 77 2.223745 GACCGAGTTTTAGCAAACCCA 58.776 47.619 0.00 0.00 43.08 4.51
77 78 2.619646 GACCGAGTTTTAGCAAACCCAA 59.380 45.455 0.00 0.00 43.08 4.12
78 79 3.227614 ACCGAGTTTTAGCAAACCCAAT 58.772 40.909 0.00 0.00 43.08 3.16
79 80 4.400120 ACCGAGTTTTAGCAAACCCAATA 58.600 39.130 0.00 0.00 43.08 1.90
80 81 4.828387 ACCGAGTTTTAGCAAACCCAATAA 59.172 37.500 0.00 0.00 43.08 1.40
81 82 5.302313 ACCGAGTTTTAGCAAACCCAATAAA 59.698 36.000 0.00 0.00 43.08 1.40
82 83 6.183360 ACCGAGTTTTAGCAAACCCAATAAAA 60.183 34.615 0.00 0.00 43.08 1.52
83 84 6.702282 CCGAGTTTTAGCAAACCCAATAAAAA 59.298 34.615 0.00 0.00 43.08 1.94
99 100 3.965780 AAAAACTTGCTTCCGCCAG 57.034 47.368 0.00 0.00 35.19 4.85
100 101 1.398692 AAAAACTTGCTTCCGCCAGA 58.601 45.000 0.00 0.00 33.41 3.86
101 102 0.954452 AAAACTTGCTTCCGCCAGAG 59.046 50.000 0.00 0.00 33.41 3.35
102 103 1.518903 AAACTTGCTTCCGCCAGAGC 61.519 55.000 0.00 0.00 33.41 4.09
122 123 3.187478 CGTTAAGCAAGTGACACATGG 57.813 47.619 12.40 0.38 0.00 3.66
123 124 2.665519 CGTTAAGCAAGTGACACATGGC 60.666 50.000 12.40 9.92 0.00 4.40
124 125 1.155889 TAAGCAAGTGACACATGGCG 58.844 50.000 12.40 0.00 0.00 5.69
125 126 0.819259 AAGCAAGTGACACATGGCGT 60.819 50.000 12.40 5.96 0.00 5.68
133 134 4.463597 CACATGGCGTGTTGATGC 57.536 55.556 10.21 0.00 39.62 3.91
134 135 1.512522 CACATGGCGTGTTGATGCG 60.513 57.895 10.21 0.00 39.62 4.73
140 141 3.566261 CGTGTTGATGCGCTTCCT 58.434 55.556 19.40 0.00 0.00 3.36
141 142 2.749541 CGTGTTGATGCGCTTCCTA 58.250 52.632 19.40 6.04 0.00 2.94
142 143 1.290203 CGTGTTGATGCGCTTCCTAT 58.710 50.000 19.40 0.00 0.00 2.57
143 144 1.004610 CGTGTTGATGCGCTTCCTATG 60.005 52.381 19.40 8.20 0.00 2.23
144 145 1.016627 TGTTGATGCGCTTCCTATGC 58.983 50.000 19.40 6.74 0.00 3.14
145 146 1.303309 GTTGATGCGCTTCCTATGCT 58.697 50.000 19.40 0.00 0.00 3.79
146 147 2.158971 TGTTGATGCGCTTCCTATGCTA 60.159 45.455 19.40 0.00 0.00 3.49
147 148 3.070018 GTTGATGCGCTTCCTATGCTAT 58.930 45.455 19.40 0.00 0.00 2.97
148 149 2.964740 TGATGCGCTTCCTATGCTATC 58.035 47.619 19.40 5.55 0.00 2.08
149 150 2.275318 GATGCGCTTCCTATGCTATCC 58.725 52.381 9.73 0.00 0.00 2.59
150 151 0.038251 TGCGCTTCCTATGCTATCCG 60.038 55.000 9.73 0.00 0.00 4.18
151 152 1.355066 GCGCTTCCTATGCTATCCGC 61.355 60.000 0.00 0.00 39.77 5.54
152 153 0.244994 CGCTTCCTATGCTATCCGCT 59.755 55.000 0.00 0.00 40.11 5.52
153 154 1.719600 GCTTCCTATGCTATCCGCTG 58.280 55.000 0.00 0.00 40.11 5.18
154 155 1.674221 GCTTCCTATGCTATCCGCTGG 60.674 57.143 0.00 0.00 40.11 4.85
155 156 0.976641 TTCCTATGCTATCCGCTGGG 59.023 55.000 0.00 0.00 40.11 4.45
174 175 1.676006 GGAATCCCCAAAGTGTATGCG 59.324 52.381 0.00 0.00 34.14 4.73
175 176 2.365582 GAATCCCCAAAGTGTATGCGT 58.634 47.619 0.00 0.00 0.00 5.24
176 177 2.038387 ATCCCCAAAGTGTATGCGTC 57.962 50.000 0.00 0.00 0.00 5.19
177 178 0.687920 TCCCCAAAGTGTATGCGTCA 59.312 50.000 0.00 0.00 0.00 4.35
178 179 1.072489 TCCCCAAAGTGTATGCGTCAA 59.928 47.619 0.00 0.00 0.00 3.18
179 180 1.199097 CCCCAAAGTGTATGCGTCAAC 59.801 52.381 0.00 0.00 0.00 3.18
180 181 2.151202 CCCAAAGTGTATGCGTCAACT 58.849 47.619 0.00 0.00 0.00 3.16
181 182 3.331150 CCCAAAGTGTATGCGTCAACTA 58.669 45.455 0.00 0.00 0.00 2.24
182 183 3.124636 CCCAAAGTGTATGCGTCAACTAC 59.875 47.826 0.00 0.00 0.00 2.73
183 184 3.994392 CCAAAGTGTATGCGTCAACTACT 59.006 43.478 0.00 0.00 0.00 2.57
184 185 4.091509 CCAAAGTGTATGCGTCAACTACTC 59.908 45.833 0.00 0.00 0.00 2.59
185 186 3.505464 AGTGTATGCGTCAACTACTCC 57.495 47.619 0.00 0.00 0.00 3.85
186 187 2.165845 AGTGTATGCGTCAACTACTCCC 59.834 50.000 0.00 0.00 0.00 4.30
187 188 1.479323 TGTATGCGTCAACTACTCCCC 59.521 52.381 0.00 0.00 0.00 4.81
188 189 1.755380 GTATGCGTCAACTACTCCCCT 59.245 52.381 0.00 0.00 0.00 4.79
189 190 1.276622 ATGCGTCAACTACTCCCCTT 58.723 50.000 0.00 0.00 0.00 3.95
190 191 0.320374 TGCGTCAACTACTCCCCTTG 59.680 55.000 0.00 0.00 0.00 3.61
191 192 0.320697 GCGTCAACTACTCCCCTTGT 59.679 55.000 0.00 0.00 0.00 3.16
192 193 1.672145 GCGTCAACTACTCCCCTTGTC 60.672 57.143 0.00 0.00 0.00 3.18
193 194 1.893801 CGTCAACTACTCCCCTTGTCT 59.106 52.381 0.00 0.00 0.00 3.41
194 195 2.094649 CGTCAACTACTCCCCTTGTCTC 60.095 54.545 0.00 0.00 0.00 3.36
195 196 2.897969 GTCAACTACTCCCCTTGTCTCA 59.102 50.000 0.00 0.00 0.00 3.27
196 197 3.056465 GTCAACTACTCCCCTTGTCTCAG 60.056 52.174 0.00 0.00 0.00 3.35
197 198 2.900546 CAACTACTCCCCTTGTCTCAGT 59.099 50.000 0.00 0.00 0.00 3.41
198 199 3.261818 ACTACTCCCCTTGTCTCAGTT 57.738 47.619 0.00 0.00 0.00 3.16
199 200 3.588569 ACTACTCCCCTTGTCTCAGTTT 58.411 45.455 0.00 0.00 0.00 2.66
200 201 4.748701 ACTACTCCCCTTGTCTCAGTTTA 58.251 43.478 0.00 0.00 0.00 2.01
201 202 5.342866 ACTACTCCCCTTGTCTCAGTTTAT 58.657 41.667 0.00 0.00 0.00 1.40
202 203 6.500336 ACTACTCCCCTTGTCTCAGTTTATA 58.500 40.000 0.00 0.00 0.00 0.98
203 204 5.941555 ACTCCCCTTGTCTCAGTTTATAG 57.058 43.478 0.00 0.00 0.00 1.31
204 205 4.717280 ACTCCCCTTGTCTCAGTTTATAGG 59.283 45.833 0.00 0.00 0.00 2.57
205 206 4.037927 TCCCCTTGTCTCAGTTTATAGGG 58.962 47.826 0.00 0.00 40.44 3.53
206 207 3.780850 CCCCTTGTCTCAGTTTATAGGGT 59.219 47.826 0.00 0.00 39.36 4.34
207 208 4.966805 CCCCTTGTCTCAGTTTATAGGGTA 59.033 45.833 0.00 0.00 39.36 3.69
208 209 5.607171 CCCCTTGTCTCAGTTTATAGGGTAT 59.393 44.000 0.00 0.00 39.36 2.73
209 210 6.464465 CCCCTTGTCTCAGTTTATAGGGTATG 60.464 46.154 0.00 0.00 39.36 2.39
210 211 5.992217 CCTTGTCTCAGTTTATAGGGTATGC 59.008 44.000 0.00 0.00 0.00 3.14
211 212 6.408092 CCTTGTCTCAGTTTATAGGGTATGCA 60.408 42.308 0.00 0.00 0.00 3.96
212 213 5.914033 TGTCTCAGTTTATAGGGTATGCAC 58.086 41.667 0.00 0.00 0.00 4.57
213 214 4.982916 GTCTCAGTTTATAGGGTATGCACG 59.017 45.833 0.00 0.00 0.00 5.34
214 215 4.647853 TCTCAGTTTATAGGGTATGCACGT 59.352 41.667 0.00 0.00 0.00 4.49
215 216 5.829391 TCTCAGTTTATAGGGTATGCACGTA 59.171 40.000 0.00 0.00 0.00 3.57
216 217 6.016527 TCTCAGTTTATAGGGTATGCACGTAG 60.017 42.308 0.00 0.00 0.00 3.51
218 219 6.097270 TCAGTTTATAGGGTATGCACGTAGTT 59.903 38.462 0.00 0.00 41.61 2.24
219 220 6.759827 CAGTTTATAGGGTATGCACGTAGTTT 59.240 38.462 0.00 0.00 41.61 2.66
220 221 7.279313 CAGTTTATAGGGTATGCACGTAGTTTT 59.721 37.037 0.00 0.00 41.61 2.43
221 222 7.493645 AGTTTATAGGGTATGCACGTAGTTTTC 59.506 37.037 0.00 0.00 41.61 2.29
222 223 3.688694 AGGGTATGCACGTAGTTTTCA 57.311 42.857 0.00 0.00 41.61 2.69
223 224 4.010667 AGGGTATGCACGTAGTTTTCAA 57.989 40.909 0.00 0.00 41.61 2.69
224 225 4.585879 AGGGTATGCACGTAGTTTTCAAT 58.414 39.130 0.00 0.00 41.61 2.57
225 226 5.007682 AGGGTATGCACGTAGTTTTCAATT 58.992 37.500 0.00 0.00 41.61 2.32
226 227 6.174760 AGGGTATGCACGTAGTTTTCAATTA 58.825 36.000 0.00 0.00 41.61 1.40
227 228 6.655848 AGGGTATGCACGTAGTTTTCAATTAA 59.344 34.615 0.00 0.00 41.61 1.40
228 229 6.744082 GGGTATGCACGTAGTTTTCAATTAAC 59.256 38.462 0.00 0.00 41.61 2.01
229 230 7.299586 GGTATGCACGTAGTTTTCAATTAACA 58.700 34.615 0.00 0.00 41.61 2.41
230 231 7.804129 GGTATGCACGTAGTTTTCAATTAACAA 59.196 33.333 0.00 0.00 41.61 2.83
231 232 9.337091 GTATGCACGTAGTTTTCAATTAACAAT 57.663 29.630 0.00 0.00 41.61 2.71
232 233 8.810652 ATGCACGTAGTTTTCAATTAACAATT 57.189 26.923 0.00 0.00 41.61 2.32
233 234 8.635877 TGCACGTAGTTTTCAATTAACAATTT 57.364 26.923 0.00 0.00 41.61 1.82
234 235 9.731819 TGCACGTAGTTTTCAATTAACAATTTA 57.268 25.926 0.00 0.00 41.61 1.40
298 299 8.190326 TGTTTAGAAACTACATCCTCTTGAGA 57.810 34.615 6.69 0.00 39.59 3.27
299 300 8.647796 TGTTTAGAAACTACATCCTCTTGAGAA 58.352 33.333 6.69 0.00 39.59 2.87
300 301 9.660180 GTTTAGAAACTACATCCTCTTGAGAAT 57.340 33.333 0.00 0.00 36.03 2.40
301 302 9.877178 TTTAGAAACTACATCCTCTTGAGAATC 57.123 33.333 0.00 0.00 0.00 2.52
302 303 6.883744 AGAAACTACATCCTCTTGAGAATCC 58.116 40.000 0.00 0.00 0.00 3.01
303 304 6.441924 AGAAACTACATCCTCTTGAGAATCCA 59.558 38.462 0.00 0.00 0.00 3.41
304 305 6.627087 AACTACATCCTCTTGAGAATCCAA 57.373 37.500 0.00 0.00 0.00 3.53
305 306 6.821616 ACTACATCCTCTTGAGAATCCAAT 57.178 37.500 0.00 0.00 0.00 3.16
306 307 6.590068 ACTACATCCTCTTGAGAATCCAATG 58.410 40.000 0.00 0.00 0.00 2.82
307 308 5.705397 ACATCCTCTTGAGAATCCAATGA 57.295 39.130 0.00 0.00 0.00 2.57
308 309 6.263412 ACATCCTCTTGAGAATCCAATGAT 57.737 37.500 0.00 0.00 0.00 2.45
309 310 7.384524 ACATCCTCTTGAGAATCCAATGATA 57.615 36.000 0.00 0.00 0.00 2.15
310 311 7.986704 ACATCCTCTTGAGAATCCAATGATAT 58.013 34.615 0.00 0.00 0.00 1.63
311 312 9.109246 ACATCCTCTTGAGAATCCAATGATATA 57.891 33.333 0.00 0.00 0.00 0.86
439 440 0.899717 TTGCAAATGTGGAGAGGGGC 60.900 55.000 0.00 0.00 0.00 5.80
463 464 5.107143 CGTGGGTATCTTTTTGCAAAATTGG 60.107 40.000 24.39 16.79 0.00 3.16
512 513 5.670792 ATAAATCGGACGGCCTATATTCA 57.329 39.130 5.33 0.00 0.00 2.57
513 514 3.594603 AATCGGACGGCCTATATTCAG 57.405 47.619 5.33 0.00 0.00 3.02
515 516 1.202964 TCGGACGGCCTATATTCAGGA 60.203 52.381 5.33 0.00 38.00 3.86
516 517 1.825474 CGGACGGCCTATATTCAGGAT 59.175 52.381 5.33 0.00 38.00 3.24
517 518 2.417379 CGGACGGCCTATATTCAGGATG 60.417 54.545 5.33 0.00 38.00 3.51
528 530 2.764007 TCAGGATGACAGGCACACT 58.236 52.632 0.00 0.00 42.56 3.55
537 539 2.833943 TGACAGGCACACTATCATCACT 59.166 45.455 0.00 0.00 0.00 3.41
610 612 8.870879 AGTCAAAACAATAATCTAGAACTACGC 58.129 33.333 0.00 0.00 0.00 4.42
611 613 7.839837 GTCAAAACAATAATCTAGAACTACGCG 59.160 37.037 3.53 3.53 0.00 6.01
612 614 5.885020 AACAATAATCTAGAACTACGCGC 57.115 39.130 5.73 0.00 0.00 6.86
613 615 4.928601 ACAATAATCTAGAACTACGCGCA 58.071 39.130 5.73 0.00 0.00 6.09
614 616 4.738740 ACAATAATCTAGAACTACGCGCAC 59.261 41.667 5.73 0.00 0.00 5.34
615 617 2.933495 AATCTAGAACTACGCGCACA 57.067 45.000 5.73 0.00 0.00 4.57
616 618 2.190325 ATCTAGAACTACGCGCACAC 57.810 50.000 5.73 0.00 0.00 3.82
617 619 0.169672 TCTAGAACTACGCGCACACC 59.830 55.000 5.73 0.00 0.00 4.16
618 620 0.801067 CTAGAACTACGCGCACACCC 60.801 60.000 5.73 0.00 0.00 4.61
619 621 1.246056 TAGAACTACGCGCACACCCT 61.246 55.000 5.73 0.00 0.00 4.34
620 622 1.213537 GAACTACGCGCACACCCTA 59.786 57.895 5.73 0.00 0.00 3.53
621 623 0.179119 GAACTACGCGCACACCCTAT 60.179 55.000 5.73 0.00 0.00 2.57
622 624 0.248289 AACTACGCGCACACCCTATT 59.752 50.000 5.73 0.00 0.00 1.73
623 625 0.179119 ACTACGCGCACACCCTATTC 60.179 55.000 5.73 0.00 0.00 1.75
624 626 0.179121 CTACGCGCACACCCTATTCA 60.179 55.000 5.73 0.00 0.00 2.57
625 627 0.458889 TACGCGCACACCCTATTCAC 60.459 55.000 5.73 0.00 0.00 3.18
626 628 2.461110 CGCGCACACCCTATTCACC 61.461 63.158 8.75 0.00 0.00 4.02
631 633 1.139058 GCACACCCTATTCACCGAGAT 59.861 52.381 0.00 0.00 0.00 2.75
659 661 1.255667 TAGTTGCTCCCACCGTCTCC 61.256 60.000 0.00 0.00 0.00 3.71
740 742 7.262375 CACACGAAAACTTTTAAAACAAACACG 59.738 33.333 0.00 2.58 0.00 4.49
795 797 4.261322 CCATATCCATCTTTGCTTGAACGG 60.261 45.833 0.00 0.00 0.00 4.44
890 901 3.044809 ACGTCATTTCGTCATCCCG 57.955 52.632 0.00 0.00 40.04 5.14
1128 1141 2.282958 TCCGAAGAGGCCGTGAGT 60.283 61.111 0.00 0.00 40.77 3.41
1136 1149 4.459089 GGCCGTGAGTGCTCCCTC 62.459 72.222 0.00 0.00 0.00 4.30
1141 1154 3.615811 TGAGTGCTCCCTCCCCCT 61.616 66.667 0.00 0.00 0.00 4.79
1153 1166 2.245438 CTCCCCCTTCCTGAGTTCGC 62.245 65.000 0.00 0.00 0.00 4.70
1156 1170 1.153745 CCCTTCCTGAGTTCGCTCG 60.154 63.158 0.00 0.00 46.95 5.03
1160 1174 1.816863 TTCCTGAGTTCGCTCGCCTT 61.817 55.000 0.00 0.00 46.95 4.35
1173 1187 3.617263 CGCTCGCCTTCTGTAGTATTTTT 59.383 43.478 0.00 0.00 0.00 1.94
1218 1232 1.399440 TCGAATCCTAGTTGTCCGTCG 59.601 52.381 0.00 0.00 0.00 5.12
1283 1297 3.328382 TGCGCTTCCAACTGTATTAGT 57.672 42.857 9.73 0.00 42.89 2.24
1434 1459 1.904287 TGCCATTTAGGGACACACAC 58.096 50.000 0.00 0.00 38.09 3.82
1442 1467 1.003718 GGGACACACACAGTAGCCC 60.004 63.158 0.00 0.00 36.13 5.19
1529 1554 3.464720 TGATCCTCTGTCTGACCTCTT 57.535 47.619 5.17 0.00 0.00 2.85
1550 1575 7.443575 CCTCTTAAGGAATCATGTATGTTCCAG 59.556 40.741 19.14 12.49 46.67 3.86
1551 1576 7.861629 TCTTAAGGAATCATGTATGTTCCAGT 58.138 34.615 19.14 12.97 38.89 4.00
1552 1577 8.988060 TCTTAAGGAATCATGTATGTTCCAGTA 58.012 33.333 19.14 12.37 38.89 2.74
1553 1578 8.958119 TTAAGGAATCATGTATGTTCCAGTAC 57.042 34.615 19.14 0.00 38.89 2.73
1591 1617 6.610830 AGTTTGTAGGAATTTCCCTTCAAGA 58.389 36.000 11.92 4.55 42.10 3.02
1595 1621 3.435275 AGGAATTTCCCTTCAAGAAGCC 58.565 45.455 11.92 0.00 37.19 4.35
1616 1642 3.928375 CCAGAAAGGAATGCCAAATTTCG 59.072 43.478 0.00 0.00 41.22 3.46
1697 1727 9.270640 CATAGTTGAATTTGTTTTCCATGGAAA 57.729 29.630 31.75 31.75 41.69 3.13
1707 1737 5.467035 TTTTCCATGGAAAATGTGGTCTC 57.533 39.130 37.56 0.00 45.59 3.36
1708 1738 4.387026 TTCCATGGAAAATGTGGTCTCT 57.613 40.909 25.13 0.00 34.61 3.10
1709 1739 5.512942 TTCCATGGAAAATGTGGTCTCTA 57.487 39.130 25.13 0.00 34.61 2.43
1711 1741 3.629398 CCATGGAAAATGTGGTCTCTAGC 59.371 47.826 5.56 0.00 0.00 3.42
1722 1754 0.037232 GTCTCTAGCGGCAAACCAGT 60.037 55.000 1.45 0.00 34.57 4.00
1763 1834 5.880054 ACAAACAGGCATAGTATGTTGTC 57.120 39.130 17.26 5.38 37.24 3.18
1765 1836 3.887621 ACAGGCATAGTATGTTGTCGT 57.112 42.857 11.73 0.57 0.00 4.34
1800 1871 7.202016 GTGGAACAATTATCACTCAGTTCAA 57.798 36.000 0.00 0.00 44.16 2.69
1823 1894 5.950023 AGCCCTGTGATTCTATCATTGAAT 58.050 37.500 0.00 0.00 42.04 2.57
1828 1899 7.415229 CCTGTGATTCTATCATTGAATGTGTG 58.585 38.462 4.93 0.00 42.04 3.82
1944 2035 0.036388 ACACCACCTAGCATTCCACG 60.036 55.000 0.00 0.00 0.00 4.94
1957 2048 5.598769 AGCATTCCACGTTACCTCTTATAC 58.401 41.667 0.00 0.00 0.00 1.47
1958 2049 5.363005 AGCATTCCACGTTACCTCTTATACT 59.637 40.000 0.00 0.00 0.00 2.12
1959 2050 5.690857 GCATTCCACGTTACCTCTTATACTC 59.309 44.000 0.00 0.00 0.00 2.59
1960 2051 5.841957 TTCCACGTTACCTCTTATACTCC 57.158 43.478 0.00 0.00 0.00 3.85
1961 2052 4.210331 TCCACGTTACCTCTTATACTCCC 58.790 47.826 0.00 0.00 0.00 4.30
1962 2053 4.079558 TCCACGTTACCTCTTATACTCCCT 60.080 45.833 0.00 0.00 0.00 4.20
1963 2054 4.277921 CCACGTTACCTCTTATACTCCCTC 59.722 50.000 0.00 0.00 0.00 4.30
1964 2055 4.024218 CACGTTACCTCTTATACTCCCTCG 60.024 50.000 0.00 0.00 0.00 4.63
1965 2056 3.501445 CGTTACCTCTTATACTCCCTCGG 59.499 52.174 0.00 0.00 0.00 4.63
1966 2057 4.468713 GTTACCTCTTATACTCCCTCGGT 58.531 47.826 0.00 0.00 0.00 4.69
1967 2058 3.226682 ACCTCTTATACTCCCTCGGTC 57.773 52.381 0.00 0.00 0.00 4.79
1968 2059 2.158490 ACCTCTTATACTCCCTCGGTCC 60.158 54.545 0.00 0.00 0.00 4.46
1969 2060 2.152830 CTCTTATACTCCCTCGGTCCG 58.847 57.143 4.39 4.39 0.00 4.79
1970 2061 1.770658 TCTTATACTCCCTCGGTCCGA 59.229 52.381 14.54 14.54 0.00 4.55
1971 2062 2.173356 TCTTATACTCCCTCGGTCCGAA 59.827 50.000 16.23 0.00 34.74 4.30
1972 2063 2.734755 TATACTCCCTCGGTCCGAAA 57.265 50.000 16.23 3.03 34.74 3.46
1973 2064 1.856629 ATACTCCCTCGGTCCGAAAA 58.143 50.000 16.23 2.66 34.74 2.29
1974 2065 1.631405 TACTCCCTCGGTCCGAAAAA 58.369 50.000 16.23 2.29 34.74 1.94
1975 2066 0.320697 ACTCCCTCGGTCCGAAAAAG 59.679 55.000 16.23 13.99 34.74 2.27
1976 2067 1.004200 TCCCTCGGTCCGAAAAAGC 60.004 57.895 16.23 0.00 34.74 3.51
1977 2068 1.003718 CCCTCGGTCCGAAAAAGCT 60.004 57.895 16.23 0.00 34.74 3.74
1978 2069 0.605589 CCCTCGGTCCGAAAAAGCTT 60.606 55.000 16.23 0.00 34.74 3.74
1979 2070 0.517316 CCTCGGTCCGAAAAAGCTTG 59.483 55.000 16.23 0.47 34.74 4.01
1980 2071 0.110192 CTCGGTCCGAAAAAGCTTGC 60.110 55.000 16.23 0.00 34.74 4.01
1981 2072 1.081442 CGGTCCGAAAAAGCTTGCC 60.081 57.895 4.91 0.00 0.00 4.52
1982 2073 1.289066 GGTCCGAAAAAGCTTGCCC 59.711 57.895 0.00 0.00 0.00 5.36
1983 2074 1.289066 GTCCGAAAAAGCTTGCCCC 59.711 57.895 0.00 0.00 0.00 5.80
1984 2075 1.152830 TCCGAAAAAGCTTGCCCCT 59.847 52.632 0.00 0.00 0.00 4.79
1985 2076 1.178534 TCCGAAAAAGCTTGCCCCTG 61.179 55.000 0.00 0.00 0.00 4.45
1986 2077 1.290009 CGAAAAAGCTTGCCCCTGG 59.710 57.895 0.00 0.00 0.00 4.45
1987 2078 1.673477 GAAAAAGCTTGCCCCTGGG 59.327 57.895 5.50 5.50 38.57 4.45
1988 2079 0.831711 GAAAAAGCTTGCCCCTGGGA 60.832 55.000 16.20 0.00 37.50 4.37
1989 2080 1.121407 AAAAAGCTTGCCCCTGGGAC 61.121 55.000 16.20 2.06 37.50 4.46
1990 2081 3.868200 AAAGCTTGCCCCTGGGACG 62.868 63.158 16.20 0.00 37.50 4.79
1993 2084 4.101448 CTTGCCCCTGGGACGGAG 62.101 72.222 16.20 0.55 36.31 4.63
1999 2090 2.687902 CCTGGGACGGAGGGAGTA 59.312 66.667 0.00 0.00 36.31 2.59
2004 2095 3.052793 CCTGGGACGGAGGGAGTATATAT 60.053 52.174 0.00 0.00 36.31 0.86
2006 2097 5.019657 TGGGACGGAGGGAGTATATATTT 57.980 43.478 0.00 0.00 0.00 1.40
2011 2102 6.872547 GGACGGAGGGAGTATATATTTTCAAC 59.127 42.308 0.00 0.00 0.00 3.18
2112 2204 8.092687 TCCTAGAAAGGTAGTTTTATGACACAC 58.907 37.037 0.00 0.00 44.09 3.82
2477 2875 3.136626 GCCTGGTAAACATCATACTCCCT 59.863 47.826 0.00 0.00 0.00 4.20
2478 2876 4.743955 GCCTGGTAAACATCATACTCCCTC 60.744 50.000 0.00 0.00 0.00 4.30
2494 2892 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2502 2900 2.159382 CCCAAAATAAGTGTCGTGGCT 58.841 47.619 0.00 0.00 0.00 4.75
2554 2952 1.409064 GCCACGACACAGATATCCTCA 59.591 52.381 0.00 0.00 0.00 3.86
2556 2955 3.711086 CCACGACACAGATATCCTCAAG 58.289 50.000 0.00 0.00 0.00 3.02
2766 3171 2.566833 AGACATTGCTTACAGCCACA 57.433 45.000 0.00 0.00 41.51 4.17
2984 3389 5.953183 TGTTATTTGCGCAATCTTGAAGAT 58.047 33.333 25.64 13.99 36.28 2.40
3092 3497 5.890334 GCAGCAGCATTGGTTACTAATAAA 58.110 37.500 0.00 0.00 41.58 1.40
3467 5221 7.961326 ATTACTTTTCCTGGCAGTCATATTT 57.039 32.000 14.43 0.00 0.00 1.40
3468 5222 5.649782 ACTTTTCCTGGCAGTCATATTTG 57.350 39.130 14.43 0.00 0.00 2.32
3509 5263 1.274184 TGCTTGGGAGTATGGGGTAGT 60.274 52.381 0.00 0.00 0.00 2.73
3557 5311 7.523293 TTCATTCACCTAAAAGCAATCTCAA 57.477 32.000 0.00 0.00 0.00 3.02
3558 5312 6.913170 TCATTCACCTAAAAGCAATCTCAAC 58.087 36.000 0.00 0.00 0.00 3.18
3590 5344 7.865820 TGAAGAGAATCCTGGTCAATTTCTAT 58.134 34.615 0.00 0.00 33.66 1.98
3591 5345 8.331740 TGAAGAGAATCCTGGTCAATTTCTATT 58.668 33.333 0.00 0.57 32.33 1.73
3593 5347 7.865820 AGAGAATCCTGGTCAATTTCTATTGA 58.134 34.615 0.00 0.00 41.43 2.57
3594 5348 7.992033 AGAGAATCCTGGTCAATTTCTATTGAG 59.008 37.037 1.06 0.00 43.08 3.02
3617 5371 2.162681 CTGGCAAAGAACTAACTGGGG 58.837 52.381 0.00 0.00 0.00 4.96
3662 5769 6.609237 TGCTTGTATCTTCTGTATCATTGC 57.391 37.500 0.00 0.00 0.00 3.56
3663 5770 6.114767 TGCTTGTATCTTCTGTATCATTGCA 58.885 36.000 0.00 0.00 0.00 4.08
3670 5777 4.102996 TCTTCTGTATCATTGCATAGGCCA 59.897 41.667 5.01 0.00 40.13 5.36
3709 5893 5.300752 ACATATAGCTTGGAAACCGATCTG 58.699 41.667 0.00 0.00 0.00 2.90
3721 5905 1.410517 ACCGATCTGCATCTAGTGGTG 59.589 52.381 0.00 0.00 0.00 4.17
3769 5994 9.604626 CTCTTGTCATACTTTGATGAAAACTTC 57.395 33.333 0.00 0.00 37.58 3.01
3773 6022 9.554395 TGTCATACTTTGATGAAAACTTCTGTA 57.446 29.630 0.00 0.00 37.58 2.74
3801 6050 6.888430 AGAGTTGTATTGAAGCAAGTAAACG 58.112 36.000 0.00 0.00 0.00 3.60
4103 6353 4.553330 AAGTGTATTCTCCATGTCCGTT 57.447 40.909 0.00 0.00 0.00 4.44
4162 6412 3.804036 TGAAGTATACTTTCCATGCCCG 58.196 45.455 18.96 0.00 36.11 6.13
4187 6437 6.858993 GTCCAGTTTGAATAGTCTAGCGATAG 59.141 42.308 0.00 0.00 0.00 2.08
4265 6517 7.709947 TGTATATTTACAGGTGACTTCGGTAG 58.290 38.462 0.00 0.00 40.21 3.18
4282 6534 7.560626 ACTTCGGTAGTCTTAAGAGATGGTAAT 59.439 37.037 5.12 0.00 33.70 1.89
4369 6621 0.990374 AGCTGCTGATGGAGAAAGGT 59.010 50.000 0.00 0.00 33.10 3.50
4432 6684 2.094258 CGTGTATGCTGTTGGTGATGTC 59.906 50.000 0.00 0.00 0.00 3.06
4465 6717 1.865865 TCAAGCTCTTTGACGGTGAC 58.134 50.000 0.00 0.00 40.82 3.67
4468 6720 2.549754 CAAGCTCTTTGACGGTGACATT 59.450 45.455 0.00 0.00 39.21 2.71
4552 6804 0.786435 AGCCTTCCAAAACCAGGGAT 59.214 50.000 0.00 0.00 32.15 3.85
4612 6864 1.218316 GTCCTGGCAGTTCTACGGG 59.782 63.158 14.43 0.00 0.00 5.28
4651 6903 0.669619 TTCACTACGGCGACTTCACA 59.330 50.000 16.62 0.00 0.00 3.58
4665 6917 0.537143 TTCACAAGCAACAGCCCGAT 60.537 50.000 0.00 0.00 0.00 4.18
4744 6996 1.102222 ACCGAGATGACTACGAGGCC 61.102 60.000 0.00 0.00 0.00 5.19
4750 7002 4.076394 GAGATGACTACGAGGCCTTATCT 58.924 47.826 6.77 7.97 0.00 1.98
4753 7005 2.950309 TGACTACGAGGCCTTATCTGTC 59.050 50.000 6.77 12.74 0.00 3.51
4816 7068 1.172812 AAAGACAAGGCCTGGCGTTC 61.173 55.000 22.64 13.52 38.56 3.95
4849 7101 1.160137 GCAAGAAAGACGTGCCTGAT 58.840 50.000 0.00 0.00 45.48 2.90
4885 7137 0.952010 GCGAAAAGCCCACCTTCGTA 60.952 55.000 5.47 0.00 42.94 3.43
5032 7284 0.743097 CTTACGGTTACTCGGAGGGG 59.257 60.000 10.23 0.00 0.00 4.79
5133 7405 9.820229 TTGTTAAATGAAATGATGTTACGAGAC 57.180 29.630 0.00 0.00 0.00 3.36
5134 7406 8.166066 TGTTAAATGAAATGATGTTACGAGACG 58.834 33.333 0.00 0.00 0.00 4.18
5150 7422 2.100603 CGTCGAGAGCGGTCCTTC 59.899 66.667 11.73 2.14 38.28 3.46
5169 7441 2.042464 TCTCCTCCCTGATGAAATCCG 58.958 52.381 0.00 0.00 44.73 4.18
5265 7542 1.667151 GCAAGTTGCAAGCCCATGA 59.333 52.632 22.90 0.00 44.26 3.07
5341 7621 2.979120 GGCGGCCAAAACGTACCA 60.979 61.111 15.62 0.00 0.00 3.25
5342 7622 2.253154 GCGGCCAAAACGTACCAC 59.747 61.111 2.24 0.00 0.00 4.16
5345 7625 0.381089 CGGCCAAAACGTACCACAAA 59.619 50.000 2.24 0.00 0.00 2.83
5346 7626 1.842720 GGCCAAAACGTACCACAAAC 58.157 50.000 0.00 0.00 0.00 2.93
5347 7627 1.134560 GGCCAAAACGTACCACAAACA 59.865 47.619 0.00 0.00 0.00 2.83
5348 7628 2.223852 GGCCAAAACGTACCACAAACAT 60.224 45.455 0.00 0.00 0.00 2.71
5349 7629 3.449632 GCCAAAACGTACCACAAACATT 58.550 40.909 0.00 0.00 0.00 2.71
5350 7630 3.866327 GCCAAAACGTACCACAAACATTT 59.134 39.130 0.00 0.00 0.00 2.32
5351 7631 4.260011 GCCAAAACGTACCACAAACATTTG 60.260 41.667 2.77 2.77 43.62 2.32
5370 7650 9.665719 AACATTTGTTCCTTTTGTATTTTCACT 57.334 25.926 0.00 0.00 31.64 3.41
5371 7651 9.665719 ACATTTGTTCCTTTTGTATTTTCACTT 57.334 25.926 0.00 0.00 0.00 3.16
5374 7654 9.712305 TTTGTTCCTTTTGTATTTTCACTTTCA 57.288 25.926 0.00 0.00 0.00 2.69
5375 7655 9.883142 TTGTTCCTTTTGTATTTTCACTTTCAT 57.117 25.926 0.00 0.00 0.00 2.57
5376 7656 9.883142 TGTTCCTTTTGTATTTTCACTTTCATT 57.117 25.926 0.00 0.00 0.00 2.57
5385 7665 9.323985 TGTATTTTCACTTTCATTTCTTTTGGG 57.676 29.630 0.00 0.00 0.00 4.12
5386 7666 6.676237 TTTTCACTTTCATTTCTTTTGGGC 57.324 33.333 0.00 0.00 0.00 5.36
5387 7667 3.976169 TCACTTTCATTTCTTTTGGGCG 58.024 40.909 0.00 0.00 0.00 6.13
5388 7668 3.383185 TCACTTTCATTTCTTTTGGGCGT 59.617 39.130 0.00 0.00 0.00 5.68
5389 7669 3.490526 CACTTTCATTTCTTTTGGGCGTG 59.509 43.478 0.00 0.00 0.00 5.34
5390 7670 2.147436 TTCATTTCTTTTGGGCGTGC 57.853 45.000 0.00 0.00 0.00 5.34
5391 7671 0.316841 TCATTTCTTTTGGGCGTGCC 59.683 50.000 1.16 1.16 0.00 5.01
5392 7672 0.318120 CATTTCTTTTGGGCGTGCCT 59.682 50.000 11.25 0.00 36.10 4.75
5393 7673 0.318120 ATTTCTTTTGGGCGTGCCTG 59.682 50.000 11.25 0.00 36.10 4.85
5394 7674 1.040339 TTTCTTTTGGGCGTGCCTGT 61.040 50.000 11.25 0.00 36.10 4.00
5395 7675 1.733402 TTCTTTTGGGCGTGCCTGTG 61.733 55.000 11.25 0.00 36.10 3.66
5396 7676 2.441164 TTTTGGGCGTGCCTGTGT 60.441 55.556 11.25 0.00 36.10 3.72
5397 7677 2.015227 CTTTTGGGCGTGCCTGTGTT 62.015 55.000 11.25 0.00 36.10 3.32
5398 7678 2.290122 TTTTGGGCGTGCCTGTGTTG 62.290 55.000 11.25 0.00 36.10 3.33
5402 7682 4.666532 GCGTGCCTGTGTTGCGTC 62.667 66.667 0.00 0.00 0.00 5.19
5403 7683 4.012895 CGTGCCTGTGTTGCGTCC 62.013 66.667 0.00 0.00 0.00 4.79
5404 7684 2.899838 GTGCCTGTGTTGCGTCCA 60.900 61.111 0.00 0.00 0.00 4.02
5405 7685 2.899838 TGCCTGTGTTGCGTCCAC 60.900 61.111 0.00 0.00 0.00 4.02
5406 7686 3.660111 GCCTGTGTTGCGTCCACC 61.660 66.667 0.00 0.00 31.71 4.61
5407 7687 2.978010 CCTGTGTTGCGTCCACCC 60.978 66.667 0.00 0.00 31.71 4.61
5408 7688 3.345808 CTGTGTTGCGTCCACCCG 61.346 66.667 0.00 0.00 31.71 5.28
5409 7689 3.800685 CTGTGTTGCGTCCACCCGA 62.801 63.158 0.00 0.00 31.71 5.14
5410 7690 3.041940 GTGTTGCGTCCACCCGAG 61.042 66.667 0.00 0.00 0.00 4.63
5411 7691 4.980805 TGTTGCGTCCACCCGAGC 62.981 66.667 0.00 0.00 0.00 5.03
5412 7692 4.980805 GTTGCGTCCACCCGAGCA 62.981 66.667 0.00 0.00 37.89 4.26
5413 7693 4.980805 TTGCGTCCACCCGAGCAC 62.981 66.667 0.00 0.00 39.51 4.40
5416 7696 3.066190 CGTCCACCCGAGCACCTA 61.066 66.667 0.00 0.00 0.00 3.08
5417 7697 2.423898 CGTCCACCCGAGCACCTAT 61.424 63.158 0.00 0.00 0.00 2.57
5418 7698 1.442148 GTCCACCCGAGCACCTATC 59.558 63.158 0.00 0.00 0.00 2.08
5419 7699 2.125326 TCCACCCGAGCACCTATCG 61.125 63.158 0.00 0.00 39.86 2.92
5420 7700 2.423898 CCACCCGAGCACCTATCGT 61.424 63.158 0.00 0.00 38.50 3.73
5421 7701 1.065928 CACCCGAGCACCTATCGTC 59.934 63.158 0.00 0.00 38.50 4.20
5422 7702 2.331805 CCCGAGCACCTATCGTCG 59.668 66.667 0.00 0.00 38.50 5.12
5423 7703 2.331805 CCGAGCACCTATCGTCGG 59.668 66.667 0.00 0.00 45.48 4.79
5424 7704 2.478890 CCGAGCACCTATCGTCGGT 61.479 63.158 1.43 0.00 45.62 4.69
5425 7705 1.432251 CGAGCACCTATCGTCGGTT 59.568 57.895 0.00 0.00 35.48 4.44
5426 7706 0.866061 CGAGCACCTATCGTCGGTTG 60.866 60.000 0.00 0.00 35.48 3.77
5427 7707 0.172803 GAGCACCTATCGTCGGTTGT 59.827 55.000 0.00 0.00 30.82 3.32
5428 7708 1.402968 GAGCACCTATCGTCGGTTGTA 59.597 52.381 0.00 0.00 30.82 2.41
5429 7709 2.029623 AGCACCTATCGTCGGTTGTAT 58.970 47.619 0.00 0.00 30.82 2.29
5430 7710 2.034305 AGCACCTATCGTCGGTTGTATC 59.966 50.000 0.00 0.00 30.82 2.24
5431 7711 2.647337 CACCTATCGTCGGTTGTATCG 58.353 52.381 0.00 0.00 30.82 2.92
5432 7712 1.605710 ACCTATCGTCGGTTGTATCGG 59.394 52.381 0.00 0.00 0.00 4.18
5433 7713 1.605710 CCTATCGTCGGTTGTATCGGT 59.394 52.381 0.00 0.00 0.00 4.69
5434 7714 2.603892 CCTATCGTCGGTTGTATCGGTG 60.604 54.545 0.00 0.00 0.00 4.94
5435 7715 0.813184 ATCGTCGGTTGTATCGGTGT 59.187 50.000 0.00 0.00 0.00 4.16
5436 7716 0.597568 TCGTCGGTTGTATCGGTGTT 59.402 50.000 0.00 0.00 0.00 3.32
5437 7717 1.000385 TCGTCGGTTGTATCGGTGTTT 60.000 47.619 0.00 0.00 0.00 2.83
5438 7718 1.125384 CGTCGGTTGTATCGGTGTTTG 59.875 52.381 0.00 0.00 0.00 2.93
5439 7719 1.461897 GTCGGTTGTATCGGTGTTTGG 59.538 52.381 0.00 0.00 0.00 3.28
5440 7720 0.167251 CGGTTGTATCGGTGTTTGGC 59.833 55.000 0.00 0.00 0.00 4.52
5441 7721 1.530323 GGTTGTATCGGTGTTTGGCT 58.470 50.000 0.00 0.00 0.00 4.75
5442 7722 1.883926 GGTTGTATCGGTGTTTGGCTT 59.116 47.619 0.00 0.00 0.00 4.35
5443 7723 2.295070 GGTTGTATCGGTGTTTGGCTTT 59.705 45.455 0.00 0.00 0.00 3.51
5444 7724 3.305110 GTTGTATCGGTGTTTGGCTTTG 58.695 45.455 0.00 0.00 0.00 2.77
5445 7725 1.268352 TGTATCGGTGTTTGGCTTTGC 59.732 47.619 0.00 0.00 0.00 3.68
5446 7726 1.268352 GTATCGGTGTTTGGCTTTGCA 59.732 47.619 0.00 0.00 0.00 4.08
5447 7727 0.749649 ATCGGTGTTTGGCTTTGCAA 59.250 45.000 0.00 0.00 0.00 4.08
5448 7728 0.749649 TCGGTGTTTGGCTTTGCAAT 59.250 45.000 0.00 0.00 0.00 3.56
5449 7729 1.957177 TCGGTGTTTGGCTTTGCAATA 59.043 42.857 0.00 0.00 0.00 1.90
5450 7730 2.058057 CGGTGTTTGGCTTTGCAATAC 58.942 47.619 0.00 0.00 0.00 1.89
5451 7731 2.544694 CGGTGTTTGGCTTTGCAATACA 60.545 45.455 0.00 0.00 0.00 2.29
5452 7732 3.462021 GGTGTTTGGCTTTGCAATACAA 58.538 40.909 0.00 3.35 36.13 2.41
5453 7733 3.873952 GGTGTTTGGCTTTGCAATACAAA 59.126 39.130 15.41 15.41 46.01 2.83
5461 7741 3.562567 TTTGCAATACAAAGCGGTACC 57.437 42.857 0.00 0.16 43.35 3.34
5462 7742 2.186532 TGCAATACAAAGCGGTACCA 57.813 45.000 13.54 0.00 0.00 3.25
5463 7743 2.505405 TGCAATACAAAGCGGTACCAA 58.495 42.857 13.54 0.00 0.00 3.67
5464 7744 2.885266 TGCAATACAAAGCGGTACCAAA 59.115 40.909 13.54 0.00 0.00 3.28
5465 7745 3.318275 TGCAATACAAAGCGGTACCAAAA 59.682 39.130 13.54 0.00 0.00 2.44
5466 7746 4.202121 TGCAATACAAAGCGGTACCAAAAA 60.202 37.500 13.54 0.00 0.00 1.94
5467 7747 4.149221 GCAATACAAAGCGGTACCAAAAAC 59.851 41.667 13.54 0.00 0.00 2.43
5468 7748 5.282510 CAATACAAAGCGGTACCAAAAACA 58.717 37.500 13.54 0.00 0.00 2.83
5469 7749 3.870633 ACAAAGCGGTACCAAAAACAA 57.129 38.095 13.54 0.00 0.00 2.83
5470 7750 4.189639 ACAAAGCGGTACCAAAAACAAA 57.810 36.364 13.54 0.00 0.00 2.83
5742 8036 3.054139 ACCCAGATAGCTTTGCTGATTGA 60.054 43.478 10.61 0.00 40.10 2.57
5745 8039 5.944599 CCCAGATAGCTTTGCTGATTGATAT 59.055 40.000 10.61 0.00 40.10 1.63
5746 8040 7.108194 CCCAGATAGCTTTGCTGATTGATATA 58.892 38.462 10.61 0.00 40.10 0.86
5747 8041 7.065563 CCCAGATAGCTTTGCTGATTGATATAC 59.934 40.741 10.61 0.00 40.10 1.47
5748 8042 7.823310 CCAGATAGCTTTGCTGATTGATATACT 59.177 37.037 10.61 0.00 40.10 2.12
5749 8043 9.866798 CAGATAGCTTTGCTGATTGATATACTA 57.133 33.333 0.00 0.00 40.10 1.82
5958 8252 7.861630 TGTAGCTTTAACAATTCTGTCAAGTC 58.138 34.615 0.00 0.00 33.45 3.01
5962 8256 6.803807 GCTTTAACAATTCTGTCAAGTCCATC 59.196 38.462 0.00 0.00 33.45 3.51
5968 8262 7.571919 ACAATTCTGTCAAGTCCATCTCATAT 58.428 34.615 0.00 0.00 0.00 1.78
5969 8263 8.708378 ACAATTCTGTCAAGTCCATCTCATATA 58.292 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.201841 GCAGCATTTTGTCCCATTATTTGC 60.202 41.667 0.00 0.00 0.00 3.68
2 3 5.163281 TGCAGCATTTTGTCCCATTATTT 57.837 34.783 0.00 0.00 0.00 1.40
3 4 4.822685 TGCAGCATTTTGTCCCATTATT 57.177 36.364 0.00 0.00 0.00 1.40
4 5 4.822685 TTGCAGCATTTTGTCCCATTAT 57.177 36.364 0.00 0.00 0.00 1.28
7 8 2.369532 ACTTTGCAGCATTTTGTCCCAT 59.630 40.909 0.00 0.00 0.00 4.00
8 9 1.761784 ACTTTGCAGCATTTTGTCCCA 59.238 42.857 0.00 0.00 0.00 4.37
9 10 2.407090 GACTTTGCAGCATTTTGTCCC 58.593 47.619 0.00 0.00 0.00 4.46
10 11 2.053627 CGACTTTGCAGCATTTTGTCC 58.946 47.619 0.00 0.00 0.00 4.02
11 12 2.721090 GTCGACTTTGCAGCATTTTGTC 59.279 45.455 8.70 1.91 0.00 3.18
12 13 2.358898 AGTCGACTTTGCAGCATTTTGT 59.641 40.909 13.58 0.00 0.00 2.83
13 14 2.722629 CAGTCGACTTTGCAGCATTTTG 59.277 45.455 17.26 0.00 0.00 2.44
14 15 2.618241 TCAGTCGACTTTGCAGCATTTT 59.382 40.909 17.26 0.00 0.00 1.82
15 16 2.221169 TCAGTCGACTTTGCAGCATTT 58.779 42.857 17.26 0.00 0.00 2.32
16 17 1.802960 CTCAGTCGACTTTGCAGCATT 59.197 47.619 17.26 0.00 0.00 3.56
17 18 1.001293 TCTCAGTCGACTTTGCAGCAT 59.999 47.619 17.26 0.00 0.00 3.79
18 19 0.389025 TCTCAGTCGACTTTGCAGCA 59.611 50.000 17.26 0.00 0.00 4.41
19 20 0.787183 GTCTCAGTCGACTTTGCAGC 59.213 55.000 17.26 0.57 0.00 5.25
20 21 2.430546 AGTCTCAGTCGACTTTGCAG 57.569 50.000 17.26 9.61 41.27 4.41
26 27 5.927115 GGATTTAACAAAGTCTCAGTCGACT 59.073 40.000 13.58 13.58 45.73 4.18
27 28 5.120363 GGGATTTAACAAAGTCTCAGTCGAC 59.880 44.000 7.70 7.70 0.00 4.20
28 29 5.221561 TGGGATTTAACAAAGTCTCAGTCGA 60.222 40.000 0.00 0.00 0.00 4.20
29 30 4.994852 TGGGATTTAACAAAGTCTCAGTCG 59.005 41.667 0.00 0.00 0.00 4.18
30 31 5.998363 ACTGGGATTTAACAAAGTCTCAGTC 59.002 40.000 9.57 0.00 0.00 3.51
31 32 5.941788 ACTGGGATTTAACAAAGTCTCAGT 58.058 37.500 9.57 9.57 0.00 3.41
32 33 5.120830 CGACTGGGATTTAACAAAGTCTCAG 59.879 44.000 8.47 8.47 33.49 3.35
33 34 4.994852 CGACTGGGATTTAACAAAGTCTCA 59.005 41.667 0.00 0.00 33.49 3.27
34 35 5.120363 GTCGACTGGGATTTAACAAAGTCTC 59.880 44.000 8.70 0.00 33.49 3.36
35 36 4.995487 GTCGACTGGGATTTAACAAAGTCT 59.005 41.667 8.70 0.00 33.49 3.24
36 37 4.153655 GGTCGACTGGGATTTAACAAAGTC 59.846 45.833 16.46 0.00 0.00 3.01
37 38 4.070009 GGTCGACTGGGATTTAACAAAGT 58.930 43.478 16.46 0.00 0.00 2.66
38 39 3.124636 CGGTCGACTGGGATTTAACAAAG 59.875 47.826 16.99 0.00 0.00 2.77
39 40 3.068560 CGGTCGACTGGGATTTAACAAA 58.931 45.455 16.99 0.00 0.00 2.83
40 41 2.299582 TCGGTCGACTGGGATTTAACAA 59.700 45.455 23.78 0.00 0.00 2.83
41 42 1.894466 TCGGTCGACTGGGATTTAACA 59.106 47.619 23.78 0.00 0.00 2.41
42 43 2.094338 ACTCGGTCGACTGGGATTTAAC 60.094 50.000 30.77 0.96 0.00 2.01
43 44 2.173519 ACTCGGTCGACTGGGATTTAA 58.826 47.619 30.77 5.37 0.00 1.52
44 45 1.843368 ACTCGGTCGACTGGGATTTA 58.157 50.000 30.77 6.14 0.00 1.40
45 46 0.974383 AACTCGGTCGACTGGGATTT 59.026 50.000 30.77 12.70 0.00 2.17
46 47 0.974383 AAACTCGGTCGACTGGGATT 59.026 50.000 30.77 22.04 0.00 3.01
47 48 0.974383 AAAACTCGGTCGACTGGGAT 59.026 50.000 30.77 16.86 0.00 3.85
48 49 1.542915 CTAAAACTCGGTCGACTGGGA 59.457 52.381 30.77 16.30 0.00 4.37
49 50 1.992170 CTAAAACTCGGTCGACTGGG 58.008 55.000 22.92 22.92 0.00 4.45
50 51 1.336517 TGCTAAAACTCGGTCGACTGG 60.337 52.381 23.78 16.33 0.00 4.00
51 52 2.060326 TGCTAAAACTCGGTCGACTG 57.940 50.000 18.66 18.66 0.00 3.51
52 53 2.798847 GTTTGCTAAAACTCGGTCGACT 59.201 45.455 16.46 0.00 42.09 4.18
53 54 2.096565 GGTTTGCTAAAACTCGGTCGAC 60.097 50.000 7.13 7.13 44.32 4.20
54 55 2.137523 GGTTTGCTAAAACTCGGTCGA 58.862 47.619 1.76 0.00 44.32 4.20
55 56 1.196127 GGGTTTGCTAAAACTCGGTCG 59.804 52.381 1.76 0.00 44.32 4.79
56 57 2.983402 GGGTTTGCTAAAACTCGGTC 57.017 50.000 1.76 0.00 44.32 4.79
95 96 0.166814 CACTTGCTTAACGCTCTGGC 59.833 55.000 0.00 0.00 40.11 4.85
96 97 1.461127 GTCACTTGCTTAACGCTCTGG 59.539 52.381 0.00 0.00 40.11 3.86
97 98 2.096713 GTGTCACTTGCTTAACGCTCTG 60.097 50.000 0.00 0.00 40.11 3.35
98 99 2.135933 GTGTCACTTGCTTAACGCTCT 58.864 47.619 0.00 0.00 40.11 4.09
99 100 1.864711 TGTGTCACTTGCTTAACGCTC 59.135 47.619 4.27 0.00 40.11 5.03
100 101 1.948104 TGTGTCACTTGCTTAACGCT 58.052 45.000 4.27 0.00 40.11 5.07
101 102 2.574322 CATGTGTCACTTGCTTAACGC 58.426 47.619 4.27 0.00 39.77 4.84
102 103 2.665519 GCCATGTGTCACTTGCTTAACG 60.666 50.000 12.30 1.07 0.00 3.18
103 104 2.665519 CGCCATGTGTCACTTGCTTAAC 60.666 50.000 12.30 0.65 0.00 2.01
104 105 1.535028 CGCCATGTGTCACTTGCTTAA 59.465 47.619 12.30 0.00 0.00 1.85
105 106 1.155889 CGCCATGTGTCACTTGCTTA 58.844 50.000 12.30 0.00 0.00 3.09
106 107 0.819259 ACGCCATGTGTCACTTGCTT 60.819 50.000 12.30 0.38 0.00 3.91
107 108 1.227943 ACGCCATGTGTCACTTGCT 60.228 52.632 12.30 0.00 0.00 3.91
108 109 1.081906 CACGCCATGTGTCACTTGC 60.082 57.895 12.30 7.42 43.88 4.01
117 118 2.869646 CGCATCAACACGCCATGT 59.130 55.556 0.00 0.00 46.42 3.21
123 124 1.004610 CATAGGAAGCGCATCAACACG 60.005 52.381 15.31 0.00 0.00 4.49
124 125 1.268234 GCATAGGAAGCGCATCAACAC 60.268 52.381 15.31 0.00 0.00 3.32
125 126 1.016627 GCATAGGAAGCGCATCAACA 58.983 50.000 15.31 0.00 0.00 3.33
126 127 1.303309 AGCATAGGAAGCGCATCAAC 58.697 50.000 15.31 0.00 37.01 3.18
127 128 2.908688 TAGCATAGGAAGCGCATCAA 57.091 45.000 15.31 2.01 37.01 2.57
128 129 2.354103 GGATAGCATAGGAAGCGCATCA 60.354 50.000 15.31 0.00 37.01 3.07
129 130 2.275318 GGATAGCATAGGAAGCGCATC 58.725 52.381 11.47 7.28 37.01 3.91
130 131 1.404717 CGGATAGCATAGGAAGCGCAT 60.405 52.381 11.47 0.00 37.01 4.73
131 132 0.038251 CGGATAGCATAGGAAGCGCA 60.038 55.000 11.47 0.00 37.01 6.09
132 133 2.743195 CGGATAGCATAGGAAGCGC 58.257 57.895 0.00 0.00 37.01 5.92
139 140 5.558388 GGGATTCCCAGCGGATAGCATAG 62.558 56.522 17.36 0.00 44.65 2.23
140 141 3.744907 GGGATTCCCAGCGGATAGCATA 61.745 54.545 17.36 0.00 44.65 3.14
141 142 3.068697 GGGATTCCCAGCGGATAGCAT 62.069 57.143 17.36 0.00 44.65 3.79
142 143 1.768684 GGGATTCCCAGCGGATAGCA 61.769 60.000 17.36 0.00 44.65 3.49
143 144 1.003233 GGGATTCCCAGCGGATAGC 60.003 63.158 17.36 0.00 44.65 2.97
154 155 1.676006 CGCATACACTTTGGGGATTCC 59.324 52.381 0.00 0.00 0.00 3.01
155 156 2.354821 GACGCATACACTTTGGGGATTC 59.645 50.000 0.00 0.00 0.00 2.52
156 157 2.290641 TGACGCATACACTTTGGGGATT 60.291 45.455 0.00 0.00 0.00 3.01
157 158 1.280710 TGACGCATACACTTTGGGGAT 59.719 47.619 0.00 0.00 0.00 3.85
158 159 0.687920 TGACGCATACACTTTGGGGA 59.312 50.000 0.00 0.00 0.00 4.81
159 160 1.199097 GTTGACGCATACACTTTGGGG 59.801 52.381 0.00 0.00 0.00 4.96
160 161 2.151202 AGTTGACGCATACACTTTGGG 58.849 47.619 0.00 0.00 0.00 4.12
161 162 3.994392 AGTAGTTGACGCATACACTTTGG 59.006 43.478 0.00 0.00 0.00 3.28
162 163 4.091509 GGAGTAGTTGACGCATACACTTTG 59.908 45.833 0.00 0.00 0.00 2.77
163 164 4.243270 GGAGTAGTTGACGCATACACTTT 58.757 43.478 0.00 0.00 0.00 2.66
164 165 3.368116 GGGAGTAGTTGACGCATACACTT 60.368 47.826 0.00 0.00 0.00 3.16
165 166 2.165845 GGGAGTAGTTGACGCATACACT 59.834 50.000 0.00 0.00 0.00 3.55
166 167 2.537401 GGGAGTAGTTGACGCATACAC 58.463 52.381 0.00 0.00 0.00 2.90
167 168 1.479323 GGGGAGTAGTTGACGCATACA 59.521 52.381 0.00 0.00 0.00 2.29
168 169 1.755380 AGGGGAGTAGTTGACGCATAC 59.245 52.381 0.00 0.00 0.00 2.39
169 170 2.154567 AGGGGAGTAGTTGACGCATA 57.845 50.000 0.00 0.00 0.00 3.14
170 171 1.066143 CAAGGGGAGTAGTTGACGCAT 60.066 52.381 0.00 0.00 0.00 4.73
171 172 0.320374 CAAGGGGAGTAGTTGACGCA 59.680 55.000 0.00 0.00 0.00 5.24
172 173 0.320697 ACAAGGGGAGTAGTTGACGC 59.679 55.000 0.00 0.00 0.00 5.19
173 174 1.893801 AGACAAGGGGAGTAGTTGACG 59.106 52.381 0.00 0.00 0.00 4.35
174 175 2.897969 TGAGACAAGGGGAGTAGTTGAC 59.102 50.000 0.00 0.00 0.00 3.18
175 176 3.165875 CTGAGACAAGGGGAGTAGTTGA 58.834 50.000 0.00 0.00 0.00 3.18
176 177 2.900546 ACTGAGACAAGGGGAGTAGTTG 59.099 50.000 0.00 0.00 0.00 3.16
177 178 3.261818 ACTGAGACAAGGGGAGTAGTT 57.738 47.619 0.00 0.00 0.00 2.24
178 179 3.261818 AACTGAGACAAGGGGAGTAGT 57.738 47.619 0.00 0.00 0.00 2.73
179 180 5.941555 ATAAACTGAGACAAGGGGAGTAG 57.058 43.478 0.00 0.00 0.00 2.57
180 181 5.897824 CCTATAAACTGAGACAAGGGGAGTA 59.102 44.000 0.00 0.00 0.00 2.59
181 182 4.717280 CCTATAAACTGAGACAAGGGGAGT 59.283 45.833 0.00 0.00 0.00 3.85
182 183 4.101741 CCCTATAAACTGAGACAAGGGGAG 59.898 50.000 0.00 0.00 38.84 4.30
183 184 4.037927 CCCTATAAACTGAGACAAGGGGA 58.962 47.826 0.00 0.00 38.84 4.81
184 185 3.780850 ACCCTATAAACTGAGACAAGGGG 59.219 47.826 9.22 0.00 45.42 4.79
185 186 6.525629 CATACCCTATAAACTGAGACAAGGG 58.474 44.000 2.95 2.95 46.36 3.95
186 187 5.992217 GCATACCCTATAAACTGAGACAAGG 59.008 44.000 0.00 0.00 0.00 3.61
187 188 6.480320 GTGCATACCCTATAAACTGAGACAAG 59.520 42.308 0.00 0.00 0.00 3.16
188 189 6.346096 GTGCATACCCTATAAACTGAGACAA 58.654 40.000 0.00 0.00 0.00 3.18
189 190 5.451381 CGTGCATACCCTATAAACTGAGACA 60.451 44.000 0.00 0.00 0.00 3.41
190 191 4.982916 CGTGCATACCCTATAAACTGAGAC 59.017 45.833 0.00 0.00 0.00 3.36
191 192 4.647853 ACGTGCATACCCTATAAACTGAGA 59.352 41.667 0.00 0.00 0.00 3.27
192 193 4.945246 ACGTGCATACCCTATAAACTGAG 58.055 43.478 0.00 0.00 0.00 3.35
193 194 5.595542 ACTACGTGCATACCCTATAAACTGA 59.404 40.000 0.00 0.00 0.00 3.41
194 195 5.839621 ACTACGTGCATACCCTATAAACTG 58.160 41.667 0.00 0.00 0.00 3.16
195 196 6.475596 AACTACGTGCATACCCTATAAACT 57.524 37.500 0.00 0.00 0.00 2.66
196 197 7.278424 TGAAAACTACGTGCATACCCTATAAAC 59.722 37.037 0.00 0.00 0.00 2.01
197 198 7.329499 TGAAAACTACGTGCATACCCTATAAA 58.671 34.615 0.00 0.00 0.00 1.40
198 199 6.876155 TGAAAACTACGTGCATACCCTATAA 58.124 36.000 0.00 0.00 0.00 0.98
199 200 6.468333 TGAAAACTACGTGCATACCCTATA 57.532 37.500 0.00 0.00 0.00 1.31
200 201 5.347620 TGAAAACTACGTGCATACCCTAT 57.652 39.130 0.00 0.00 0.00 2.57
201 202 4.804868 TGAAAACTACGTGCATACCCTA 57.195 40.909 0.00 0.00 0.00 3.53
202 203 3.688694 TGAAAACTACGTGCATACCCT 57.311 42.857 0.00 0.00 0.00 4.34
203 204 4.957759 ATTGAAAACTACGTGCATACCC 57.042 40.909 0.00 0.00 0.00 3.69
204 205 7.299586 TGTTAATTGAAAACTACGTGCATACC 58.700 34.615 0.00 0.00 0.00 2.73
205 206 8.716619 TTGTTAATTGAAAACTACGTGCATAC 57.283 30.769 0.00 0.00 0.00 2.39
206 207 9.900710 AATTGTTAATTGAAAACTACGTGCATA 57.099 25.926 0.00 0.00 0.00 3.14
207 208 8.810652 AATTGTTAATTGAAAACTACGTGCAT 57.189 26.923 0.00 0.00 0.00 3.96
208 209 8.635877 AAATTGTTAATTGAAAACTACGTGCA 57.364 26.923 0.00 0.00 0.00 4.57
272 273 8.816894 TCTCAAGAGGATGTAGTTTCTAAACAT 58.183 33.333 8.21 0.00 41.30 2.71
273 274 8.190326 TCTCAAGAGGATGTAGTTTCTAAACA 57.810 34.615 8.21 0.00 41.30 2.83
274 275 9.660180 ATTCTCAAGAGGATGTAGTTTCTAAAC 57.340 33.333 0.00 0.00 39.17 2.01
275 276 9.877178 GATTCTCAAGAGGATGTAGTTTCTAAA 57.123 33.333 0.00 0.00 0.00 1.85
276 277 8.478877 GGATTCTCAAGAGGATGTAGTTTCTAA 58.521 37.037 0.00 0.00 0.00 2.10
277 278 7.619698 TGGATTCTCAAGAGGATGTAGTTTCTA 59.380 37.037 0.00 0.00 0.00 2.10
278 279 6.441924 TGGATTCTCAAGAGGATGTAGTTTCT 59.558 38.462 0.00 0.00 0.00 2.52
279 280 6.644347 TGGATTCTCAAGAGGATGTAGTTTC 58.356 40.000 0.00 0.00 0.00 2.78
280 281 6.627087 TGGATTCTCAAGAGGATGTAGTTT 57.373 37.500 0.00 0.00 0.00 2.66
281 282 6.627087 TTGGATTCTCAAGAGGATGTAGTT 57.373 37.500 0.00 0.00 0.00 2.24
282 283 6.385176 TCATTGGATTCTCAAGAGGATGTAGT 59.615 38.462 0.00 0.00 0.00 2.73
283 284 6.824553 TCATTGGATTCTCAAGAGGATGTAG 58.175 40.000 0.00 0.00 0.00 2.74
284 285 6.813293 TCATTGGATTCTCAAGAGGATGTA 57.187 37.500 0.00 0.00 0.00 2.29
285 286 5.705397 TCATTGGATTCTCAAGAGGATGT 57.295 39.130 0.00 0.00 0.00 3.06
309 310 7.761249 GCATCTTGCTAGTTTCACCAAAAATAT 59.239 33.333 0.00 0.00 40.96 1.28
310 311 7.090173 GCATCTTGCTAGTTTCACCAAAAATA 58.910 34.615 0.00 0.00 40.96 1.40
311 312 5.928264 GCATCTTGCTAGTTTCACCAAAAAT 59.072 36.000 0.00 0.00 40.96 1.82
312 313 5.288804 GCATCTTGCTAGTTTCACCAAAAA 58.711 37.500 0.00 0.00 40.96 1.94
313 314 4.261994 GGCATCTTGCTAGTTTCACCAAAA 60.262 41.667 0.00 0.00 44.28 2.44
314 315 3.255642 GGCATCTTGCTAGTTTCACCAAA 59.744 43.478 0.00 0.00 44.28 3.28
315 316 2.819608 GGCATCTTGCTAGTTTCACCAA 59.180 45.455 0.00 0.00 44.28 3.67
316 317 2.436417 GGCATCTTGCTAGTTTCACCA 58.564 47.619 0.00 0.00 44.28 4.17
317 318 1.745653 GGGCATCTTGCTAGTTTCACC 59.254 52.381 0.00 0.00 44.28 4.02
318 319 2.436417 TGGGCATCTTGCTAGTTTCAC 58.564 47.619 0.00 0.00 44.28 3.18
319 320 2.877097 TGGGCATCTTGCTAGTTTCA 57.123 45.000 0.00 0.00 44.28 2.69
320 321 2.223665 GCATGGGCATCTTGCTAGTTTC 60.224 50.000 0.00 0.00 44.28 2.78
321 322 1.753073 GCATGGGCATCTTGCTAGTTT 59.247 47.619 0.00 0.00 44.28 2.66
392 393 4.948004 GGTATTCCCTCGTTCATCCTTTTT 59.052 41.667 0.00 0.00 0.00 1.94
412 413 5.652014 CCTCTCCACATTTGCAAATAAGGTA 59.348 40.000 27.78 20.36 0.00 3.08
413 414 4.463891 CCTCTCCACATTTGCAAATAAGGT 59.536 41.667 27.78 19.27 0.00 3.50
439 440 5.107143 CCAATTTTGCAAAAAGATACCCACG 60.107 40.000 27.10 7.33 0.00 4.94
463 464 4.202223 TGACGGATAGGAAGGAAACTATGC 60.202 45.833 0.00 0.00 42.68 3.14
512 513 2.470990 TGATAGTGTGCCTGTCATCCT 58.529 47.619 0.00 0.00 36.50 3.24
513 514 2.988010 TGATAGTGTGCCTGTCATCC 57.012 50.000 0.00 0.00 36.50 3.51
516 517 2.833943 AGTGATGATAGTGTGCCTGTCA 59.166 45.455 0.00 0.00 44.25 3.58
517 518 3.533606 AGTGATGATAGTGTGCCTGTC 57.466 47.619 0.00 0.00 32.25 3.51
518 519 4.467795 AGTTAGTGATGATAGTGTGCCTGT 59.532 41.667 0.00 0.00 0.00 4.00
586 588 7.463648 GCGCGTAGTTCTAGATTATTGTTTTGA 60.464 37.037 8.43 0.00 0.00 2.69
587 589 6.623743 GCGCGTAGTTCTAGATTATTGTTTTG 59.376 38.462 8.43 0.00 0.00 2.44
588 590 6.311935 TGCGCGTAGTTCTAGATTATTGTTTT 59.688 34.615 8.43 0.00 0.00 2.43
589 591 5.808540 TGCGCGTAGTTCTAGATTATTGTTT 59.191 36.000 8.43 0.00 0.00 2.83
590 592 5.231568 GTGCGCGTAGTTCTAGATTATTGTT 59.768 40.000 8.43 0.00 0.00 2.83
591 593 4.738740 GTGCGCGTAGTTCTAGATTATTGT 59.261 41.667 8.43 0.00 0.00 2.71
592 594 4.738252 TGTGCGCGTAGTTCTAGATTATTG 59.262 41.667 8.43 0.00 0.00 1.90
593 595 4.738740 GTGTGCGCGTAGTTCTAGATTATT 59.261 41.667 8.43 0.00 0.00 1.40
594 596 4.288531 GTGTGCGCGTAGTTCTAGATTAT 58.711 43.478 8.43 0.00 0.00 1.28
595 597 3.488047 GGTGTGCGCGTAGTTCTAGATTA 60.488 47.826 8.43 0.00 0.00 1.75
596 598 2.527100 GTGTGCGCGTAGTTCTAGATT 58.473 47.619 8.43 0.00 0.00 2.40
597 599 1.202268 GGTGTGCGCGTAGTTCTAGAT 60.202 52.381 8.43 0.00 0.00 1.98
598 600 0.169672 GGTGTGCGCGTAGTTCTAGA 59.830 55.000 8.43 0.00 0.00 2.43
599 601 0.801067 GGGTGTGCGCGTAGTTCTAG 60.801 60.000 8.43 0.00 0.00 2.43
600 602 1.213537 GGGTGTGCGCGTAGTTCTA 59.786 57.895 8.43 0.00 0.00 2.10
601 603 1.246056 TAGGGTGTGCGCGTAGTTCT 61.246 55.000 8.43 1.19 0.00 3.01
602 604 0.179119 ATAGGGTGTGCGCGTAGTTC 60.179 55.000 8.43 0.00 0.00 3.01
603 605 0.248289 AATAGGGTGTGCGCGTAGTT 59.752 50.000 8.43 0.00 0.00 2.24
604 606 0.179119 GAATAGGGTGTGCGCGTAGT 60.179 55.000 8.43 0.00 0.00 2.73
605 607 0.179121 TGAATAGGGTGTGCGCGTAG 60.179 55.000 8.43 0.00 0.00 3.51
606 608 0.458889 GTGAATAGGGTGTGCGCGTA 60.459 55.000 8.43 0.00 0.00 4.42
607 609 1.740296 GTGAATAGGGTGTGCGCGT 60.740 57.895 8.43 0.00 0.00 6.01
608 610 2.461110 GGTGAATAGGGTGTGCGCG 61.461 63.158 0.00 0.00 0.00 6.86
609 611 2.461110 CGGTGAATAGGGTGTGCGC 61.461 63.158 0.00 0.00 0.00 6.09
610 612 0.806102 CTCGGTGAATAGGGTGTGCG 60.806 60.000 0.00 0.00 0.00 5.34
611 613 0.535335 TCTCGGTGAATAGGGTGTGC 59.465 55.000 0.00 0.00 0.00 4.57
612 614 2.483714 CCATCTCGGTGAATAGGGTGTG 60.484 54.545 0.00 0.00 0.00 3.82
613 615 1.762957 CCATCTCGGTGAATAGGGTGT 59.237 52.381 0.00 0.00 0.00 4.16
614 616 2.036475 CTCCATCTCGGTGAATAGGGTG 59.964 54.545 0.00 0.00 35.57 4.61
615 617 2.091278 TCTCCATCTCGGTGAATAGGGT 60.091 50.000 0.00 0.00 34.30 4.34
616 618 2.598565 TCTCCATCTCGGTGAATAGGG 58.401 52.381 0.00 0.00 34.30 3.53
617 619 4.100189 ACTTTCTCCATCTCGGTGAATAGG 59.900 45.833 0.00 0.00 44.64 2.57
618 620 5.269505 ACTTTCTCCATCTCGGTGAATAG 57.730 43.478 0.00 0.00 44.64 1.73
619 621 5.892119 ACTACTTTCTCCATCTCGGTGAATA 59.108 40.000 0.00 0.00 44.64 1.75
620 622 4.712337 ACTACTTTCTCCATCTCGGTGAAT 59.288 41.667 0.00 0.00 44.64 2.57
621 623 4.087182 ACTACTTTCTCCATCTCGGTGAA 58.913 43.478 0.00 0.00 43.83 3.18
622 624 3.698289 ACTACTTTCTCCATCTCGGTGA 58.302 45.455 0.00 0.00 35.45 4.02
623 625 4.177026 CAACTACTTTCTCCATCTCGGTG 58.823 47.826 0.00 0.00 35.57 4.94
624 626 3.368531 GCAACTACTTTCTCCATCTCGGT 60.369 47.826 0.00 0.00 35.57 4.69
625 627 3.118956 AGCAACTACTTTCTCCATCTCGG 60.119 47.826 0.00 0.00 0.00 4.63
626 628 4.109050 GAGCAACTACTTTCTCCATCTCG 58.891 47.826 0.00 0.00 0.00 4.04
631 633 2.038557 GTGGGAGCAACTACTTTCTCCA 59.961 50.000 9.07 0.00 45.21 3.86
640 642 1.255667 GGAGACGGTGGGAGCAACTA 61.256 60.000 0.00 0.00 0.00 2.24
666 668 9.914131 AAATGTAGGAGCAACTATTTTCTTTTC 57.086 29.630 0.00 0.00 0.00 2.29
668 670 9.914131 GAAAATGTAGGAGCAACTATTTTCTTT 57.086 29.630 14.79 3.95 33.42 2.52
669 671 8.523658 GGAAAATGTAGGAGCAACTATTTTCTT 58.476 33.333 18.19 2.64 34.94 2.52
670 672 7.890655 AGGAAAATGTAGGAGCAACTATTTTCT 59.109 33.333 18.19 7.40 34.94 2.52
671 673 8.056407 AGGAAAATGTAGGAGCAACTATTTTC 57.944 34.615 14.22 14.22 34.39 2.29
672 674 8.422577 AAGGAAAATGTAGGAGCAACTATTTT 57.577 30.769 0.00 0.00 0.00 1.82
673 675 7.122799 GGAAGGAAAATGTAGGAGCAACTATTT 59.877 37.037 0.00 0.00 0.00 1.40
740 742 1.087501 GTGGAGCGTGGAATTTCCTC 58.912 55.000 16.25 11.65 37.46 3.71
795 797 1.829222 TGTCGTGTTATCTTCCCCTCC 59.171 52.381 0.00 0.00 0.00 4.30
842 853 3.760035 CGTCTCCACCTCACCCCG 61.760 72.222 0.00 0.00 0.00 5.73
890 901 1.848895 TGTGTAGGGGTGGGGGTTC 60.849 63.158 0.00 0.00 0.00 3.62
970 983 4.392166 TACCGGGCTGCTCCTCCA 62.392 66.667 6.32 0.00 34.39 3.86
984 997 1.227380 CATCCTGCCTGCGTCTACC 60.227 63.158 0.00 0.00 0.00 3.18
1128 1141 3.626596 AGGAAGGGGGAGGGAGCA 61.627 66.667 0.00 0.00 0.00 4.26
1136 1149 2.245438 GAGCGAACTCAGGAAGGGGG 62.245 65.000 0.00 0.00 42.93 5.40
1141 1154 1.816863 AAGGCGAGCGAACTCAGGAA 61.817 55.000 0.00 0.00 43.66 3.36
1173 1187 2.301296 CAGAGGGAGTTCTGAAGCTGAA 59.699 50.000 0.00 0.00 45.95 3.02
1218 1232 4.603946 GGCGCGGTCCTATCCACC 62.604 72.222 8.83 0.00 0.00 4.61
1283 1297 7.148373 GCTGACGTAACCACAAATAAATCCTTA 60.148 37.037 0.00 0.00 0.00 2.69
1418 1443 3.684788 GCTACTGTGTGTGTCCCTAAATG 59.315 47.826 0.00 0.00 0.00 2.32
1434 1459 2.816958 CTGCAGTGCGGGCTACTG 60.817 66.667 16.66 14.66 46.37 2.74
1442 1467 0.944386 AGTTACCAAACTGCAGTGCG 59.056 50.000 22.49 14.38 44.40 5.34
1496 1521 7.605691 CAGACAGAGGATCAAAACTAAACTCAT 59.394 37.037 0.00 0.00 37.82 2.90
1497 1522 6.931281 CAGACAGAGGATCAAAACTAAACTCA 59.069 38.462 0.00 0.00 37.82 3.41
1499 1524 6.931840 GTCAGACAGAGGATCAAAACTAAACT 59.068 38.462 0.00 0.00 37.82 2.66
1500 1525 6.147985 GGTCAGACAGAGGATCAAAACTAAAC 59.852 42.308 2.17 0.00 37.82 2.01
1501 1526 6.043243 AGGTCAGACAGAGGATCAAAACTAAA 59.957 38.462 2.17 0.00 37.82 1.85
1529 1554 7.207383 CGTACTGGAACATACATGATTCCTTA 58.793 38.462 17.48 10.06 38.20 2.69
1591 1617 2.014010 TTGGCATTCCTTTCTGGCTT 57.986 45.000 0.00 0.00 38.64 4.35
1595 1621 3.368843 GCGAAATTTGGCATTCCTTTCTG 59.631 43.478 18.93 0.00 31.76 3.02
1616 1642 4.874966 AGCTGAATCTTAAGATCACACAGC 59.125 41.667 31.60 31.60 41.54 4.40
1697 1727 0.613260 TTGCCGCTAGAGACCACATT 59.387 50.000 0.00 0.00 0.00 2.71
1703 1733 0.037232 ACTGGTTTGCCGCTAGAGAC 60.037 55.000 0.00 0.00 37.67 3.36
1704 1734 0.037326 CACTGGTTTGCCGCTAGAGA 60.037 55.000 0.00 0.00 37.67 3.10
1705 1735 1.021390 CCACTGGTTTGCCGCTAGAG 61.021 60.000 0.00 0.00 37.67 2.43
1706 1736 1.003839 CCACTGGTTTGCCGCTAGA 60.004 57.895 0.00 0.00 37.67 2.43
1707 1737 2.040544 CCCACTGGTTTGCCGCTAG 61.041 63.158 0.00 0.00 37.67 3.42
1708 1738 2.033448 CCCACTGGTTTGCCGCTA 59.967 61.111 0.00 0.00 37.67 4.26
1709 1739 4.974721 CCCCACTGGTTTGCCGCT 62.975 66.667 0.00 0.00 37.67 5.52
1722 1754 1.619332 GTTTTTAATTCCACCGCCCCA 59.381 47.619 0.00 0.00 0.00 4.96
1730 1762 7.731054 ACTATGCCTGTTTGTTTTTAATTCCA 58.269 30.769 0.00 0.00 0.00 3.53
1800 1871 5.378230 TTCAATGATAGAATCACAGGGCT 57.622 39.130 0.00 0.00 43.01 5.19
1823 1894 8.908786 AAAGAGATCATTAAGAGAAACACACA 57.091 30.769 0.00 0.00 0.00 3.72
1944 2035 4.468713 ACCGAGGGAGTATAAGAGGTAAC 58.531 47.826 0.00 0.00 0.00 2.50
1957 2048 1.019805 GCTTTTTCGGACCGAGGGAG 61.020 60.000 17.51 15.69 37.14 4.30
1958 2049 1.004200 GCTTTTTCGGACCGAGGGA 60.004 57.895 17.51 4.65 37.14 4.20
1959 2050 0.605589 AAGCTTTTTCGGACCGAGGG 60.606 55.000 17.51 9.49 37.14 4.30
1960 2051 0.517316 CAAGCTTTTTCGGACCGAGG 59.483 55.000 17.51 9.83 37.14 4.63
1961 2052 0.110192 GCAAGCTTTTTCGGACCGAG 60.110 55.000 17.51 6.59 37.14 4.63
1962 2053 1.512156 GGCAAGCTTTTTCGGACCGA 61.512 55.000 13.88 13.88 0.00 4.69
1963 2054 1.081442 GGCAAGCTTTTTCGGACCG 60.081 57.895 7.84 7.84 0.00 4.79
1964 2055 1.289066 GGGCAAGCTTTTTCGGACC 59.711 57.895 0.00 0.00 0.00 4.46
1965 2056 1.179174 AGGGGCAAGCTTTTTCGGAC 61.179 55.000 0.00 0.00 0.00 4.79
1966 2057 1.152830 AGGGGCAAGCTTTTTCGGA 59.847 52.632 0.00 0.00 0.00 4.55
1967 2058 1.290009 CAGGGGCAAGCTTTTTCGG 59.710 57.895 0.00 0.00 0.00 4.30
1968 2059 1.290009 CCAGGGGCAAGCTTTTTCG 59.710 57.895 0.00 0.00 0.00 3.46
1969 2060 0.831711 TCCCAGGGGCAAGCTTTTTC 60.832 55.000 5.33 0.00 34.68 2.29
1970 2061 1.121407 GTCCCAGGGGCAAGCTTTTT 61.121 55.000 4.69 0.00 34.68 1.94
1971 2062 1.533994 GTCCCAGGGGCAAGCTTTT 60.534 57.895 4.69 0.00 34.68 2.27
1972 2063 2.118294 GTCCCAGGGGCAAGCTTT 59.882 61.111 4.69 0.00 34.68 3.51
1973 2064 4.351054 CGTCCCAGGGGCAAGCTT 62.351 66.667 11.80 0.00 34.68 3.74
1976 2067 4.101448 CTCCGTCCCAGGGGCAAG 62.101 72.222 11.80 2.61 34.68 4.01
1982 2073 0.481567 TATACTCCCTCCGTCCCAGG 59.518 60.000 0.00 0.00 0.00 4.45
1983 2074 2.606751 ATATACTCCCTCCGTCCCAG 57.393 55.000 0.00 0.00 0.00 4.45
1984 2075 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
1985 2076 5.482878 TGAAAATATATACTCCCTCCGTCCC 59.517 44.000 0.00 0.00 0.00 4.46
1986 2077 6.600882 TGAAAATATATACTCCCTCCGTCC 57.399 41.667 0.00 0.00 0.00 4.79
1987 2078 6.872547 GGTTGAAAATATATACTCCCTCCGTC 59.127 42.308 0.00 0.00 0.00 4.79
1988 2079 6.517864 CGGTTGAAAATATATACTCCCTCCGT 60.518 42.308 0.00 0.00 0.00 4.69
1989 2080 5.867716 CGGTTGAAAATATATACTCCCTCCG 59.132 44.000 0.00 0.00 0.00 4.63
1990 2081 6.649557 CACGGTTGAAAATATATACTCCCTCC 59.350 42.308 0.00 0.00 0.00 4.30
1991 2082 7.439381 TCACGGTTGAAAATATATACTCCCTC 58.561 38.462 0.00 0.00 0.00 4.30
1992 2083 7.369551 TCACGGTTGAAAATATATACTCCCT 57.630 36.000 0.00 0.00 0.00 4.20
1993 2084 8.617290 AATCACGGTTGAAAATATATACTCCC 57.383 34.615 0.00 0.00 34.61 4.30
2038 2129 8.459635 GTGAAAGAAGAGGGGTAATATTTCAAC 58.540 37.037 0.00 0.00 37.22 3.18
2112 2204 7.482654 TTGAAAGTGTGAAACTGTCTATCAG 57.517 36.000 0.00 0.00 42.90 2.90
2156 2335 8.447833 GCAAAACATAGTGTTAACAGTAGCATA 58.552 33.333 23.70 7.20 40.14 3.14
2360 2539 5.691896 AGCTAAACAAACCTACCTTGTTCT 58.308 37.500 1.74 0.00 44.25 3.01
2455 2731 3.136626 AGGGAGTATGATGTTTACCAGGC 59.863 47.826 0.00 0.00 0.00 4.85
2477 2875 4.062293 CACGACACTTATTTTGGGACAGA 58.938 43.478 0.00 0.00 42.39 3.41
2478 2876 3.188460 CCACGACACTTATTTTGGGACAG 59.812 47.826 0.00 0.00 42.39 3.51
2494 2892 5.278604 ACAAATTTGAACTAAAGCCACGAC 58.721 37.500 24.64 0.00 0.00 4.34
2641 3040 6.801539 CCGATGTAGGCATAAACATTACAT 57.198 37.500 0.00 0.00 36.48 2.29
2766 3171 7.782644 AGTGTCTTATAGCTGATAGTTTCTCCT 59.217 37.037 0.00 0.00 0.00 3.69
2984 3389 4.123506 TCGCATTCACTAATTTATCCGCA 58.876 39.130 0.00 0.00 0.00 5.69
3092 3497 6.663523 CAGGGAAGACCATGGTTACTTTTATT 59.336 38.462 20.85 0.00 43.28 1.40
3180 3587 5.014858 CAGCATATCATGGGAGCCTAAATT 58.985 41.667 0.00 0.00 0.00 1.82
3340 5051 8.621286 GTTGAGTCTTTTTCAAAGGATGTAAGA 58.379 33.333 0.00 0.00 36.41 2.10
3467 5221 1.204146 GAACCTCTATCAGCCACCCA 58.796 55.000 0.00 0.00 0.00 4.51
3468 5222 0.470341 GGAACCTCTATCAGCCACCC 59.530 60.000 0.00 0.00 0.00 4.61
3509 5263 7.984422 ATGAGTATGACTGTGATTTCAACAA 57.016 32.000 0.00 0.00 0.00 2.83
3557 5311 4.015084 CCAGGATTCTCTTCAATTGCTGT 58.985 43.478 0.00 0.00 0.00 4.40
3558 5312 4.015084 ACCAGGATTCTCTTCAATTGCTG 58.985 43.478 0.00 0.00 0.00 4.41
3590 5344 5.296780 CAGTTAGTTCTTTGCCAGTTCTCAA 59.703 40.000 0.00 0.00 0.00 3.02
3591 5345 4.816385 CAGTTAGTTCTTTGCCAGTTCTCA 59.184 41.667 0.00 0.00 0.00 3.27
3593 5347 4.137543 CCAGTTAGTTCTTTGCCAGTTCT 58.862 43.478 0.00 0.00 0.00 3.01
3594 5348 3.253432 CCCAGTTAGTTCTTTGCCAGTTC 59.747 47.826 0.00 0.00 0.00 3.01
3617 5371 5.624509 GCAATTCTCCCCTAAATGGTCAAAC 60.625 44.000 0.00 0.00 0.00 2.93
3709 5893 6.095432 AGATACAGAATCACCACTAGATGC 57.905 41.667 0.00 0.00 37.03 3.91
3769 5994 6.159293 TGCTTCAATACAACTCTCAGTACAG 58.841 40.000 0.00 0.00 0.00 2.74
3773 6022 5.615289 ACTTGCTTCAATACAACTCTCAGT 58.385 37.500 0.00 0.00 0.00 3.41
4162 6412 4.995124 TCGCTAGACTATTCAAACTGGAC 58.005 43.478 0.00 0.00 0.00 4.02
4187 6437 3.851969 GCAAATAAAGGCAGTCGCTTAAC 59.148 43.478 0.00 0.00 38.60 2.01
4369 6621 1.271982 TGCCCGTTTACCTTTATGCCA 60.272 47.619 0.00 0.00 0.00 4.92
4432 6684 1.845809 GCTTGATAGGGAATGCGGCG 61.846 60.000 0.51 0.51 0.00 6.46
4438 6690 4.446371 CGTCAAAGAGCTTGATAGGGAAT 58.554 43.478 0.00 0.00 45.74 3.01
4465 6717 0.027194 CATGCTCAAGCCGTCGAATG 59.973 55.000 0.00 0.00 41.18 2.67
4468 6720 1.005037 AACATGCTCAAGCCGTCGA 60.005 52.632 0.00 0.00 41.18 4.20
4552 6804 3.197766 AGAAGAATGGCAGGTAATCGACA 59.802 43.478 0.00 0.00 0.00 4.35
4612 6864 5.063564 GTGAATTACTTCTCCGACATTGTCC 59.936 44.000 11.12 0.00 32.29 4.02
4651 6903 1.577328 CGAACATCGGGCTGTTGCTT 61.577 55.000 4.30 0.00 39.40 3.91
4665 6917 2.125310 CCCAGTATGCGCCGAACA 60.125 61.111 4.18 0.00 31.97 3.18
4732 6984 2.950309 GACAGATAAGGCCTCGTAGTCA 59.050 50.000 5.23 0.00 0.00 3.41
4753 7005 1.204813 GGTTTTACGCCGGACAACG 59.795 57.895 5.05 0.27 43.80 4.10
4816 7068 0.677731 TCTTGCTTTCCTGGATGGCG 60.678 55.000 13.89 4.35 35.26 5.69
4870 7122 0.696501 ACCATACGAAGGTGGGCTTT 59.303 50.000 0.00 0.00 40.88 3.51
5032 7284 8.483307 TTTCGTACAGGTTTTTATACAGGATC 57.517 34.615 0.00 0.00 0.00 3.36
5131 7403 2.580720 GAAGGACCGCTCTCGACGTC 62.581 65.000 5.18 5.18 38.10 4.34
5133 7405 2.100603 GAAGGACCGCTCTCGACG 59.899 66.667 0.00 0.00 38.10 5.12
5134 7406 1.430228 GAGAAGGACCGCTCTCGAC 59.570 63.158 9.96 0.00 38.10 4.20
5144 7416 2.166907 TCATCAGGGAGGAGAAGGAC 57.833 55.000 0.00 0.00 0.00 3.85
5150 7422 1.765314 ACGGATTTCATCAGGGAGGAG 59.235 52.381 0.00 0.00 0.00 3.69
5169 7441 3.181516 CCAGCGACTGCAGAGAAATTTAC 60.182 47.826 23.35 0.00 46.23 2.01
5265 7542 5.357257 CGTACTAGCATTTGGTTAGATGGT 58.643 41.667 0.00 0.00 37.67 3.55
5327 7607 1.134560 TGTTTGTGGTACGTTTTGGCC 59.865 47.619 0.00 0.00 0.00 5.36
5345 7625 9.665719 AAGTGAAAATACAAAAGGAACAAATGT 57.334 25.926 0.00 0.00 0.00 2.71
5348 7628 9.712305 TGAAAGTGAAAATACAAAAGGAACAAA 57.288 25.926 0.00 0.00 0.00 2.83
5349 7629 9.883142 ATGAAAGTGAAAATACAAAAGGAACAA 57.117 25.926 0.00 0.00 0.00 2.83
5350 7630 9.883142 AATGAAAGTGAAAATACAAAAGGAACA 57.117 25.926 0.00 0.00 0.00 3.18
5359 7639 9.323985 CCCAAAAGAAATGAAAGTGAAAATACA 57.676 29.630 0.00 0.00 0.00 2.29
5360 7640 8.282592 GCCCAAAAGAAATGAAAGTGAAAATAC 58.717 33.333 0.00 0.00 0.00 1.89
5361 7641 7.170658 CGCCCAAAAGAAATGAAAGTGAAAATA 59.829 33.333 0.00 0.00 0.00 1.40
5362 7642 6.018016 CGCCCAAAAGAAATGAAAGTGAAAAT 60.018 34.615 0.00 0.00 0.00 1.82
5363 7643 5.293079 CGCCCAAAAGAAATGAAAGTGAAAA 59.707 36.000 0.00 0.00 0.00 2.29
5364 7644 4.808364 CGCCCAAAAGAAATGAAAGTGAAA 59.192 37.500 0.00 0.00 0.00 2.69
5365 7645 4.142049 ACGCCCAAAAGAAATGAAAGTGAA 60.142 37.500 0.00 0.00 0.00 3.18
5366 7646 3.383185 ACGCCCAAAAGAAATGAAAGTGA 59.617 39.130 0.00 0.00 0.00 3.41
5367 7647 3.490526 CACGCCCAAAAGAAATGAAAGTG 59.509 43.478 0.00 0.00 0.00 3.16
5368 7648 3.716601 CACGCCCAAAAGAAATGAAAGT 58.283 40.909 0.00 0.00 0.00 2.66
5369 7649 2.476241 GCACGCCCAAAAGAAATGAAAG 59.524 45.455 0.00 0.00 0.00 2.62
5370 7650 2.478831 GCACGCCCAAAAGAAATGAAA 58.521 42.857 0.00 0.00 0.00 2.69
5371 7651 1.270041 GGCACGCCCAAAAGAAATGAA 60.270 47.619 0.00 0.00 0.00 2.57
5372 7652 0.316841 GGCACGCCCAAAAGAAATGA 59.683 50.000 0.00 0.00 0.00 2.57
5373 7653 0.318120 AGGCACGCCCAAAAGAAATG 59.682 50.000 3.95 0.00 36.58 2.32
5374 7654 0.318120 CAGGCACGCCCAAAAGAAAT 59.682 50.000 3.95 0.00 36.58 2.17
5375 7655 1.040339 ACAGGCACGCCCAAAAGAAA 61.040 50.000 3.95 0.00 36.58 2.52
5376 7656 1.454847 ACAGGCACGCCCAAAAGAA 60.455 52.632 3.95 0.00 36.58 2.52
5377 7657 2.192861 CACAGGCACGCCCAAAAGA 61.193 57.895 3.95 0.00 36.58 2.52
5378 7658 2.015227 AACACAGGCACGCCCAAAAG 62.015 55.000 3.95 0.00 36.58 2.27
5379 7659 2.055042 AACACAGGCACGCCCAAAA 61.055 52.632 3.95 0.00 36.58 2.44
5380 7660 2.441164 AACACAGGCACGCCCAAA 60.441 55.556 3.95 0.00 36.58 3.28
5381 7661 3.215568 CAACACAGGCACGCCCAA 61.216 61.111 3.95 0.00 36.58 4.12
5385 7665 4.666532 GACGCAACACAGGCACGC 62.667 66.667 0.00 0.00 0.00 5.34
5386 7666 4.012895 GGACGCAACACAGGCACG 62.013 66.667 0.00 0.00 0.00 5.34
5387 7667 2.899838 TGGACGCAACACAGGCAC 60.900 61.111 0.00 0.00 0.00 5.01
5388 7668 2.899838 GTGGACGCAACACAGGCA 60.900 61.111 0.00 0.00 38.67 4.75
5389 7669 3.660111 GGTGGACGCAACACAGGC 61.660 66.667 6.98 0.00 40.54 4.85
5390 7670 2.978010 GGGTGGACGCAACACAGG 60.978 66.667 6.98 0.00 40.54 4.00
5391 7671 3.345808 CGGGTGGACGCAACACAG 61.346 66.667 6.98 0.00 40.54 3.66
5392 7672 3.800685 CTCGGGTGGACGCAACACA 62.801 63.158 6.98 0.00 40.54 3.72
5393 7673 3.041940 CTCGGGTGGACGCAACAC 61.042 66.667 0.00 0.00 38.10 3.32
5394 7674 4.980805 GCTCGGGTGGACGCAACA 62.981 66.667 0.00 0.00 0.00 3.33
5395 7675 4.980805 TGCTCGGGTGGACGCAAC 62.981 66.667 0.00 0.00 0.00 4.17
5396 7676 4.980805 GTGCTCGGGTGGACGCAA 62.981 66.667 0.00 0.00 32.94 4.85
5399 7679 2.351336 GATAGGTGCTCGGGTGGACG 62.351 65.000 0.00 0.00 0.00 4.79
5400 7680 1.442148 GATAGGTGCTCGGGTGGAC 59.558 63.158 0.00 0.00 0.00 4.02
5401 7681 2.125326 CGATAGGTGCTCGGGTGGA 61.125 63.158 0.00 0.00 32.58 4.02
5402 7682 2.351336 GACGATAGGTGCTCGGGTGG 62.351 65.000 0.00 0.00 40.37 4.61
5403 7683 1.065928 GACGATAGGTGCTCGGGTG 59.934 63.158 0.00 0.00 40.37 4.61
5404 7684 2.478890 CGACGATAGGTGCTCGGGT 61.479 63.158 0.00 0.00 40.37 5.28
5405 7685 2.331805 CGACGATAGGTGCTCGGG 59.668 66.667 0.00 0.00 40.37 5.14
5406 7686 2.331805 CCGACGATAGGTGCTCGG 59.668 66.667 0.00 0.00 40.37 4.63
5407 7687 0.866061 CAACCGACGATAGGTGCTCG 60.866 60.000 0.00 0.00 41.95 5.03
5408 7688 0.172803 ACAACCGACGATAGGTGCTC 59.827 55.000 0.00 0.00 41.95 4.26
5409 7689 1.466856 TACAACCGACGATAGGTGCT 58.533 50.000 0.00 0.00 41.95 4.40
5410 7690 2.391879 GATACAACCGACGATAGGTGC 58.608 52.381 0.00 0.00 41.95 5.01
5411 7691 2.603892 CCGATACAACCGACGATAGGTG 60.604 54.545 0.00 0.00 41.95 4.00
5412 7692 1.605710 CCGATACAACCGACGATAGGT 59.394 52.381 0.00 0.00 45.29 3.08
5413 7693 1.605710 ACCGATACAACCGACGATAGG 59.394 52.381 0.00 0.00 43.77 2.57
5414 7694 2.032550 ACACCGATACAACCGACGATAG 59.967 50.000 0.00 0.00 46.19 2.08
5415 7695 2.016318 ACACCGATACAACCGACGATA 58.984 47.619 0.00 0.00 0.00 2.92
5416 7696 0.813184 ACACCGATACAACCGACGAT 59.187 50.000 0.00 0.00 0.00 3.73
5417 7697 0.597568 AACACCGATACAACCGACGA 59.402 50.000 0.00 0.00 0.00 4.20
5418 7698 1.125384 CAAACACCGATACAACCGACG 59.875 52.381 0.00 0.00 0.00 5.12
5419 7699 1.461897 CCAAACACCGATACAACCGAC 59.538 52.381 0.00 0.00 0.00 4.79
5420 7700 1.798283 CCAAACACCGATACAACCGA 58.202 50.000 0.00 0.00 0.00 4.69
5421 7701 0.167251 GCCAAACACCGATACAACCG 59.833 55.000 0.00 0.00 0.00 4.44
5422 7702 1.530323 AGCCAAACACCGATACAACC 58.470 50.000 0.00 0.00 0.00 3.77
5423 7703 3.305110 CAAAGCCAAACACCGATACAAC 58.695 45.455 0.00 0.00 0.00 3.32
5424 7704 2.287909 GCAAAGCCAAACACCGATACAA 60.288 45.455 0.00 0.00 0.00 2.41
5425 7705 1.268352 GCAAAGCCAAACACCGATACA 59.732 47.619 0.00 0.00 0.00 2.29
5426 7706 1.268352 TGCAAAGCCAAACACCGATAC 59.732 47.619 0.00 0.00 0.00 2.24
5427 7707 1.610363 TGCAAAGCCAAACACCGATA 58.390 45.000 0.00 0.00 0.00 2.92
5428 7708 0.749649 TTGCAAAGCCAAACACCGAT 59.250 45.000 0.00 0.00 0.00 4.18
5429 7709 0.749649 ATTGCAAAGCCAAACACCGA 59.250 45.000 1.71 0.00 0.00 4.69
5430 7710 2.058057 GTATTGCAAAGCCAAACACCG 58.942 47.619 1.71 0.00 0.00 4.94
5431 7711 3.104843 TGTATTGCAAAGCCAAACACC 57.895 42.857 1.71 0.00 0.00 4.16
5441 7721 2.885266 TGGTACCGCTTTGTATTGCAAA 59.115 40.909 1.71 0.00 44.05 3.68
5442 7722 2.505405 TGGTACCGCTTTGTATTGCAA 58.495 42.857 7.57 0.00 34.87 4.08
5443 7723 2.186532 TGGTACCGCTTTGTATTGCA 57.813 45.000 7.57 0.00 0.00 4.08
5444 7724 3.562567 TTTGGTACCGCTTTGTATTGC 57.437 42.857 7.57 0.00 0.00 3.56
5445 7725 5.282510 TGTTTTTGGTACCGCTTTGTATTG 58.717 37.500 7.57 0.00 0.00 1.90
5446 7726 5.517322 TGTTTTTGGTACCGCTTTGTATT 57.483 34.783 7.57 0.00 0.00 1.89
5447 7727 5.517322 TTGTTTTTGGTACCGCTTTGTAT 57.483 34.783 7.57 0.00 0.00 2.29
5448 7728 4.978083 TTGTTTTTGGTACCGCTTTGTA 57.022 36.364 7.57 0.00 0.00 2.41
5449 7729 3.870633 TTGTTTTTGGTACCGCTTTGT 57.129 38.095 7.57 0.00 0.00 2.83
5450 7730 5.532025 TTTTTGTTTTTGGTACCGCTTTG 57.468 34.783 7.57 0.00 0.00 2.77
5469 7749 0.249447 GAAGGCAAGGTGCGCTTTTT 60.249 50.000 9.73 0.00 46.21 1.94
5470 7750 1.363807 GAAGGCAAGGTGCGCTTTT 59.636 52.632 9.73 0.00 46.21 2.27
5723 8017 8.774890 AGTATATCAATCAGCAAAGCTATCTG 57.225 34.615 0.00 0.00 36.40 2.90
5764 8058 5.355630 TCTCTGCTCCGCTCTGTATATATTC 59.644 44.000 0.00 0.00 0.00 1.75
5773 8067 1.067749 CCATCTCTGCTCCGCTCTG 59.932 63.158 0.00 0.00 0.00 3.35
5776 8070 3.859414 GCCCATCTCTGCTCCGCT 61.859 66.667 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.