Multiple sequence alignment - TraesCS6D01G253500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G253500 chr6D 100.000 3492 0 0 1 3492 357582026 357578535 0.000000e+00 6449.0
1 TraesCS6D01G253500 chr6B 90.500 1779 115 19 872 2641 539179664 539177931 0.000000e+00 2300.0
2 TraesCS6D01G253500 chr6B 92.723 481 26 9 2652 3131 48493691 48493219 0.000000e+00 686.0
3 TraesCS6D01G253500 chr6B 81.230 618 74 27 265 870 539180384 539179797 8.830000e-126 460.0
4 TraesCS6D01G253500 chr6B 93.902 164 9 1 2 165 394425674 394425836 2.690000e-61 246.0
5 TraesCS6D01G253500 chr6B 93.878 49 1 2 3444 3492 539177782 539177736 4.830000e-09 73.1
6 TraesCS6D01G253500 chr6A 93.558 652 31 4 1995 2643 499658741 499658098 0.000000e+00 961.0
7 TraesCS6D01G253500 chr6A 95.054 465 21 2 2672 3135 88810191 88809728 0.000000e+00 730.0
8 TraesCS6D01G253500 chr6A 98.745 239 3 0 3254 3492 499658107 499657869 3.220000e-115 425.0
9 TraesCS6D01G253500 chr6A 91.870 123 4 3 3134 3255 88809670 88809553 2.160000e-37 167.0
10 TraesCS6D01G253500 chr7B 92.797 472 27 6 2661 3131 125229322 125229787 0.000000e+00 676.0
11 TraesCS6D01G253500 chr7B 92.585 472 28 6 2661 3131 125265497 125265962 0.000000e+00 671.0
12 TraesCS6D01G253500 chr7B 92.585 472 28 6 2661 3131 125301563 125302028 0.000000e+00 671.0
13 TraesCS6D01G253500 chr7B 92.585 472 28 6 2661 3131 125335258 125335723 0.000000e+00 671.0
14 TraesCS6D01G253500 chr7B 93.496 123 5 3 3131 3252 125209308 125209428 2.770000e-41 180.0
15 TraesCS6D01G253500 chr5B 91.992 487 24 9 2652 3131 529047316 529046838 0.000000e+00 669.0
16 TraesCS6D01G253500 chr5B 94.309 123 6 1 3131 3252 529046775 529046653 1.650000e-43 187.0
17 TraesCS6D01G253500 chr2B 91.598 488 25 9 2652 3131 788538410 788537931 0.000000e+00 660.0
18 TraesCS6D01G253500 chr2B 93.413 167 10 1 2 168 385128225 385128060 2.690000e-61 246.0
19 TraesCS6D01G253500 chr2B 84.158 101 9 5 657 756 186941130 186941036 1.330000e-14 91.6
20 TraesCS6D01G253500 chr7A 91.758 364 20 5 2773 3135 719928208 719927854 6.730000e-137 497.0
21 TraesCS6D01G253500 chr7A 89.844 128 12 1 3129 3255 719927801 719927674 2.790000e-36 163.0
22 TraesCS6D01G253500 chr7A 79.710 207 25 10 2677 2879 696292371 696292178 2.190000e-27 134.0
23 TraesCS6D01G253500 chr7A 92.982 57 3 1 2652 2708 45698607 45698662 8.030000e-12 82.4
24 TraesCS6D01G253500 chr5A 77.804 838 135 24 1056 1878 504932838 504932037 1.470000e-128 470.0
25 TraesCS6D01G253500 chr5A 83.636 55 9 0 2031 2085 680859685 680859631 6.000000e-03 52.8
26 TraesCS6D01G253500 chrUn 93.413 167 10 1 2 168 446906825 446906660 2.690000e-61 246.0
27 TraesCS6D01G253500 chr7D 93.413 167 10 1 2 168 382001563 382001398 2.690000e-61 246.0
28 TraesCS6D01G253500 chr4D 93.902 164 9 1 2 165 123377578 123377740 2.690000e-61 246.0
29 TraesCS6D01G253500 chr4D 93.902 164 9 1 2 165 123588365 123588527 2.690000e-61 246.0
30 TraesCS6D01G253500 chr4D 92.683 123 7 2 3131 3252 464309086 464308965 3.580000e-40 176.0
31 TraesCS6D01G253500 chr2D 93.413 167 10 1 2 168 637325647 637325482 2.690000e-61 246.0
32 TraesCS6D01G253500 chr2D 92.982 57 3 1 2652 2708 45829629 45829684 8.030000e-12 82.4
33 TraesCS6D01G253500 chr1A 93.413 167 10 1 2 168 238146471 238146306 2.690000e-61 246.0
34 TraesCS6D01G253500 chr1A 93.413 167 10 1 2 168 334070751 334070586 2.690000e-61 246.0
35 TraesCS6D01G253500 chr1D 93.496 123 7 1 3131 3252 1815616 1815494 7.700000e-42 182.0
36 TraesCS6D01G253500 chr1D 89.474 133 10 4 3131 3261 445220934 445220804 7.750000e-37 165.0
37 TraesCS6D01G253500 chr1D 83.168 101 10 5 657 756 50887357 50887451 6.210000e-13 86.1
38 TraesCS6D01G253500 chr4B 94.017 117 7 0 3134 3250 621686739 621686855 9.960000e-41 178.0
39 TraesCS6D01G253500 chr5D 92.683 123 7 2 3131 3252 424652374 424652253 3.580000e-40 176.0
40 TraesCS6D01G253500 chr4A 84.158 101 9 5 657 756 127225164 127225070 1.330000e-14 91.6
41 TraesCS6D01G253500 chr3D 83.168 101 10 5 657 756 141668678 141668584 6.210000e-13 86.1
42 TraesCS6D01G253500 chr3D 82.178 101 11 5 657 756 53828525 53828431 2.890000e-11 80.5
43 TraesCS6D01G253500 chr2A 78.000 150 23 8 610 756 736539572 736539430 6.210000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G253500 chr6D 357578535 357582026 3491 True 6449.000000 6449 100.0000 1 3492 1 chr6D.!!$R1 3491
1 TraesCS6D01G253500 chr6B 539177736 539180384 2648 True 944.366667 2300 88.5360 265 3492 3 chr6B.!!$R2 3227
2 TraesCS6D01G253500 chr6A 499657869 499658741 872 True 693.000000 961 96.1515 1995 3492 2 chr6A.!!$R2 1497
3 TraesCS6D01G253500 chr6A 88809553 88810191 638 True 448.500000 730 93.4620 2672 3255 2 chr6A.!!$R1 583
4 TraesCS6D01G253500 chr5B 529046653 529047316 663 True 428.000000 669 93.1505 2652 3252 2 chr5B.!!$R1 600
5 TraesCS6D01G253500 chr7A 719927674 719928208 534 True 330.000000 497 90.8010 2773 3255 2 chr7A.!!$R2 482
6 TraesCS6D01G253500 chr5A 504932037 504932838 801 True 470.000000 470 77.8040 1056 1878 1 chr5A.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 445 0.251341 GCCCCCAACTGATCTGTGTT 60.251 55.0 5.96 0.14 0.00 3.32 F
510 511 0.388649 ATATGACGATTCGAGCGGCC 60.389 55.0 13.95 0.00 35.47 6.13 F
736 747 0.537188 CATAGACACCGGTGCTCCTT 59.463 55.0 34.26 15.00 0.00 3.36 F
1130 1280 0.677731 ACGACATCCCAAGCACCATG 60.678 55.0 0.00 0.00 0.00 3.66 F
2170 2329 0.391130 ATAAGAAGCTGCGCACGGAA 60.391 50.0 5.66 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1627 0.320247 GCTCAGTATGGCCATCTCCG 60.320 60.000 24.80 9.78 36.16 4.63 R
1946 2105 0.536687 CCTCGGGAGTGAGCGGTATA 60.537 60.000 0.00 0.00 34.56 1.47 R
1973 2132 1.354506 GCTCAGCCATTCGTGATGC 59.645 57.895 0.00 0.00 34.25 3.91 R
2203 2365 1.451387 GGTGGGGTAAGACATGCGG 60.451 63.158 0.00 0.00 0.00 5.69 R
3312 3552 0.031716 TAGAGTGCAGGCTCATCCCT 60.032 55.000 7.05 0.00 37.94 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.781681 AGGAGGTACATTTTGGACGG 57.218 50.000 0.00 0.00 29.95 4.79
20 21 2.262637 AGGAGGTACATTTTGGACGGA 58.737 47.619 0.00 0.00 29.95 4.69
21 22 2.844348 AGGAGGTACATTTTGGACGGAT 59.156 45.455 0.00 0.00 29.95 4.18
22 23 2.943033 GGAGGTACATTTTGGACGGATG 59.057 50.000 0.00 0.00 29.95 3.51
23 24 3.606687 GAGGTACATTTTGGACGGATGT 58.393 45.455 0.00 0.00 37.70 3.06
24 25 3.343617 AGGTACATTTTGGACGGATGTG 58.656 45.455 0.00 0.00 35.72 3.21
25 26 3.078837 GGTACATTTTGGACGGATGTGT 58.921 45.455 0.00 0.00 35.72 3.72
26 27 4.020039 AGGTACATTTTGGACGGATGTGTA 60.020 41.667 0.00 0.00 35.72 2.90
27 28 4.696402 GGTACATTTTGGACGGATGTGTAA 59.304 41.667 0.00 0.00 35.72 2.41
28 29 5.355910 GGTACATTTTGGACGGATGTGTAAT 59.644 40.000 0.00 0.00 35.72 1.89
29 30 5.975693 ACATTTTGGACGGATGTGTAATT 57.024 34.783 0.00 0.00 33.08 1.40
30 31 5.949735 ACATTTTGGACGGATGTGTAATTC 58.050 37.500 0.00 0.00 33.08 2.17
31 32 5.710099 ACATTTTGGACGGATGTGTAATTCT 59.290 36.000 0.00 0.00 33.08 2.40
32 33 6.208599 ACATTTTGGACGGATGTGTAATTCTT 59.791 34.615 0.00 0.00 33.08 2.52
33 34 5.873179 TTTGGACGGATGTGTAATTCTTC 57.127 39.130 0.00 0.00 0.00 2.87
34 35 4.545208 TGGACGGATGTGTAATTCTTCA 57.455 40.909 0.00 0.00 0.00 3.02
35 36 5.097742 TGGACGGATGTGTAATTCTTCAT 57.902 39.130 0.00 0.00 0.00 2.57
36 37 4.875536 TGGACGGATGTGTAATTCTTCATG 59.124 41.667 0.00 0.00 0.00 3.07
37 38 5.116180 GGACGGATGTGTAATTCTTCATGA 58.884 41.667 0.00 0.00 0.00 3.07
38 39 5.584649 GGACGGATGTGTAATTCTTCATGAA 59.415 40.000 8.12 8.12 39.24 2.57
39 40 6.238211 GGACGGATGTGTAATTCTTCATGAAG 60.238 42.308 26.56 26.56 38.18 3.02
40 41 6.173339 ACGGATGTGTAATTCTTCATGAAGT 58.827 36.000 29.80 16.71 38.18 3.01
41 42 6.655003 ACGGATGTGTAATTCTTCATGAAGTT 59.345 34.615 29.80 21.45 38.18 2.66
42 43 7.174946 ACGGATGTGTAATTCTTCATGAAGTTT 59.825 33.333 29.80 25.05 38.18 2.66
43 44 8.023128 CGGATGTGTAATTCTTCATGAAGTTTT 58.977 33.333 29.80 24.77 38.18 2.43
44 45 9.132521 GGATGTGTAATTCTTCATGAAGTTTTG 57.867 33.333 29.80 9.96 38.18 2.44
45 46 7.928908 TGTGTAATTCTTCATGAAGTTTTGC 57.071 32.000 29.80 25.11 38.18 3.68
46 47 7.487484 TGTGTAATTCTTCATGAAGTTTTGCA 58.513 30.769 29.80 26.78 38.18 4.08
47 48 8.143193 TGTGTAATTCTTCATGAAGTTTTGCAT 58.857 29.630 29.80 15.17 38.18 3.96
48 49 8.430063 GTGTAATTCTTCATGAAGTTTTGCATG 58.570 33.333 29.80 7.21 42.41 4.06
49 50 8.358895 TGTAATTCTTCATGAAGTTTTGCATGA 58.641 29.630 29.80 9.36 46.50 3.07
54 55 5.771153 TCATGAAGTTTTGCATGAGTTGA 57.229 34.783 0.00 0.00 44.17 3.18
55 56 6.146601 TCATGAAGTTTTGCATGAGTTGAA 57.853 33.333 0.00 0.00 44.17 2.69
56 57 6.571605 TCATGAAGTTTTGCATGAGTTGAAA 58.428 32.000 0.00 0.00 44.17 2.69
57 58 7.040494 TCATGAAGTTTTGCATGAGTTGAAAA 58.960 30.769 0.00 0.00 44.17 2.29
58 59 7.711772 TCATGAAGTTTTGCATGAGTTGAAAAT 59.288 29.630 0.00 0.00 44.17 1.82
59 60 7.467557 TGAAGTTTTGCATGAGTTGAAAATC 57.532 32.000 0.00 0.00 32.71 2.17
60 61 7.267128 TGAAGTTTTGCATGAGTTGAAAATCT 58.733 30.769 0.00 0.00 35.32 2.40
61 62 7.436080 TGAAGTTTTGCATGAGTTGAAAATCTC 59.564 33.333 0.00 0.00 33.50 2.75
62 63 7.047460 AGTTTTGCATGAGTTGAAAATCTCT 57.953 32.000 0.00 0.00 32.71 3.10
63 64 7.144000 AGTTTTGCATGAGTTGAAAATCTCTC 58.856 34.615 0.00 0.00 32.71 3.20
64 65 6.638096 TTTGCATGAGTTGAAAATCTCTCA 57.362 33.333 0.00 0.00 40.43 3.27
65 66 5.618056 TGCATGAGTTGAAAATCTCTCAC 57.382 39.130 0.00 0.00 39.27 3.51
66 67 5.311265 TGCATGAGTTGAAAATCTCTCACT 58.689 37.500 0.00 0.00 39.27 3.41
67 68 5.410746 TGCATGAGTTGAAAATCTCTCACTC 59.589 40.000 0.00 0.00 39.27 3.51
68 69 5.642919 GCATGAGTTGAAAATCTCTCACTCT 59.357 40.000 0.00 0.00 39.27 3.24
69 70 6.815641 GCATGAGTTGAAAATCTCTCACTCTA 59.184 38.462 0.00 0.00 39.27 2.43
70 71 7.332926 GCATGAGTTGAAAATCTCTCACTCTAA 59.667 37.037 0.00 0.00 39.27 2.10
71 72 9.212641 CATGAGTTGAAAATCTCTCACTCTAAA 57.787 33.333 0.00 0.00 39.27 1.85
72 73 8.824159 TGAGTTGAAAATCTCTCACTCTAAAG 57.176 34.615 0.00 0.00 36.63 1.85
73 74 7.875041 TGAGTTGAAAATCTCTCACTCTAAAGG 59.125 37.037 0.00 0.00 36.63 3.11
74 75 7.967908 AGTTGAAAATCTCTCACTCTAAAGGA 58.032 34.615 0.00 0.00 0.00 3.36
75 76 8.432805 AGTTGAAAATCTCTCACTCTAAAGGAA 58.567 33.333 0.00 0.00 0.00 3.36
76 77 9.225436 GTTGAAAATCTCTCACTCTAAAGGAAT 57.775 33.333 0.00 0.00 0.00 3.01
77 78 9.799106 TTGAAAATCTCTCACTCTAAAGGAATT 57.201 29.630 0.00 0.00 0.00 2.17
78 79 9.799106 TGAAAATCTCTCACTCTAAAGGAATTT 57.201 29.630 0.00 0.00 0.00 1.82
81 82 7.622893 ATCTCTCACTCTAAAGGAATTTTGC 57.377 36.000 0.00 0.00 0.00 3.68
82 83 6.773638 TCTCTCACTCTAAAGGAATTTTGCT 58.226 36.000 0.00 0.00 0.00 3.91
83 84 7.227156 TCTCTCACTCTAAAGGAATTTTGCTT 58.773 34.615 0.00 0.00 40.77 3.91
84 85 7.389053 TCTCTCACTCTAAAGGAATTTTGCTTC 59.611 37.037 0.00 0.00 37.91 3.86
85 86 6.998074 TCTCACTCTAAAGGAATTTTGCTTCA 59.002 34.615 0.00 0.00 37.91 3.02
86 87 7.173907 TCTCACTCTAAAGGAATTTTGCTTCAG 59.826 37.037 0.00 0.00 37.91 3.02
87 88 6.772716 TCACTCTAAAGGAATTTTGCTTCAGT 59.227 34.615 0.00 0.00 37.91 3.41
88 89 7.285401 TCACTCTAAAGGAATTTTGCTTCAGTT 59.715 33.333 0.00 0.00 37.91 3.16
89 90 7.380602 CACTCTAAAGGAATTTTGCTTCAGTTG 59.619 37.037 0.00 0.00 37.91 3.16
90 91 6.748132 TCTAAAGGAATTTTGCTTCAGTTGG 58.252 36.000 0.00 0.00 37.91 3.77
91 92 5.612725 AAAGGAATTTTGCTTCAGTTGGA 57.387 34.783 0.00 0.00 37.91 3.53
92 93 5.813513 AAGGAATTTTGCTTCAGTTGGAT 57.186 34.783 0.00 0.00 33.26 3.41
93 94 5.813513 AGGAATTTTGCTTCAGTTGGATT 57.186 34.783 0.00 0.00 0.00 3.01
94 95 6.178607 AGGAATTTTGCTTCAGTTGGATTT 57.821 33.333 0.00 0.00 0.00 2.17
95 96 6.594744 AGGAATTTTGCTTCAGTTGGATTTT 58.405 32.000 0.00 0.00 0.00 1.82
96 97 6.484308 AGGAATTTTGCTTCAGTTGGATTTTG 59.516 34.615 0.00 0.00 0.00 2.44
97 98 6.482973 GGAATTTTGCTTCAGTTGGATTTTGA 59.517 34.615 0.00 0.00 0.00 2.69
98 99 7.012232 GGAATTTTGCTTCAGTTGGATTTTGAA 59.988 33.333 0.00 0.00 0.00 2.69
99 100 7.862512 ATTTTGCTTCAGTTGGATTTTGAAA 57.137 28.000 0.00 0.00 31.11 2.69
100 101 7.678947 TTTTGCTTCAGTTGGATTTTGAAAA 57.321 28.000 0.00 0.00 31.11 2.29
101 102 7.678947 TTTGCTTCAGTTGGATTTTGAAAAA 57.321 28.000 0.00 0.00 31.11 1.94
102 103 6.907206 TGCTTCAGTTGGATTTTGAAAAAG 57.093 33.333 0.00 0.00 31.11 2.27
103 104 5.294060 TGCTTCAGTTGGATTTTGAAAAAGC 59.706 36.000 0.00 0.00 33.77 3.51
104 105 5.525012 GCTTCAGTTGGATTTTGAAAAAGCT 59.475 36.000 0.00 0.00 34.87 3.74
105 106 6.037500 GCTTCAGTTGGATTTTGAAAAAGCTT 59.962 34.615 0.00 0.00 34.87 3.74
106 107 7.224557 GCTTCAGTTGGATTTTGAAAAAGCTTA 59.775 33.333 0.00 0.00 34.87 3.09
107 108 9.264719 CTTCAGTTGGATTTTGAAAAAGCTTAT 57.735 29.630 0.00 0.00 34.87 1.73
108 109 8.592105 TCAGTTGGATTTTGAAAAAGCTTATG 57.408 30.769 0.00 0.00 34.87 1.90
109 110 8.420222 TCAGTTGGATTTTGAAAAAGCTTATGA 58.580 29.630 0.00 0.00 34.87 2.15
110 111 9.211485 CAGTTGGATTTTGAAAAAGCTTATGAT 57.789 29.630 0.00 0.00 34.87 2.45
120 121 9.507329 TTGAAAAAGCTTATGATAGAGTTCAGT 57.493 29.630 0.00 0.00 0.00 3.41
123 124 8.655651 AAAAGCTTATGATAGAGTTCAGTAGC 57.344 34.615 0.00 0.00 36.76 3.58
124 125 7.595819 AAGCTTATGATAGAGTTCAGTAGCT 57.404 36.000 0.00 0.00 42.95 3.32
125 126 7.595819 AGCTTATGATAGAGTTCAGTAGCTT 57.404 36.000 0.00 0.00 40.52 3.74
126 127 8.017418 AGCTTATGATAGAGTTCAGTAGCTTT 57.983 34.615 0.00 0.00 40.52 3.51
127 128 8.482128 AGCTTATGATAGAGTTCAGTAGCTTTT 58.518 33.333 0.00 0.00 40.52 2.27
128 129 8.760569 GCTTATGATAGAGTTCAGTAGCTTTTC 58.239 37.037 0.00 0.00 35.10 2.29
131 132 8.715191 ATGATAGAGTTCAGTAGCTTTTCTTG 57.285 34.615 0.00 0.00 0.00 3.02
132 133 7.099764 TGATAGAGTTCAGTAGCTTTTCTTGG 58.900 38.462 0.00 0.00 0.00 3.61
133 134 4.068599 AGAGTTCAGTAGCTTTTCTTGGC 58.931 43.478 0.00 0.00 0.00 4.52
134 135 3.815401 GAGTTCAGTAGCTTTTCTTGGCA 59.185 43.478 0.00 0.00 0.00 4.92
135 136 3.817647 AGTTCAGTAGCTTTTCTTGGCAG 59.182 43.478 0.00 0.00 0.00 4.85
136 137 3.769739 TCAGTAGCTTTTCTTGGCAGA 57.230 42.857 0.00 0.00 0.00 4.26
137 138 3.668447 TCAGTAGCTTTTCTTGGCAGAG 58.332 45.455 0.00 0.00 0.00 3.35
138 139 2.746362 CAGTAGCTTTTCTTGGCAGAGG 59.254 50.000 0.00 0.00 0.00 3.69
139 140 2.373502 AGTAGCTTTTCTTGGCAGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
140 141 3.583086 AGTAGCTTTTCTTGGCAGAGGTA 59.417 43.478 0.00 0.00 0.00 3.08
141 142 3.508845 AGCTTTTCTTGGCAGAGGTAA 57.491 42.857 0.00 0.00 0.00 2.85
142 143 4.039603 AGCTTTTCTTGGCAGAGGTAAT 57.960 40.909 0.00 0.00 0.00 1.89
143 144 3.760684 AGCTTTTCTTGGCAGAGGTAATG 59.239 43.478 0.00 0.00 0.00 1.90
144 145 3.674410 GCTTTTCTTGGCAGAGGTAATGC 60.674 47.826 0.00 0.00 43.09 3.56
145 146 2.877097 TTCTTGGCAGAGGTAATGCA 57.123 45.000 0.00 0.00 45.68 3.96
146 147 3.370840 TTCTTGGCAGAGGTAATGCAT 57.629 42.857 0.00 0.00 45.68 3.96
147 148 4.502105 TTCTTGGCAGAGGTAATGCATA 57.498 40.909 0.00 0.00 45.68 3.14
148 149 4.502105 TCTTGGCAGAGGTAATGCATAA 57.498 40.909 0.00 0.00 45.68 1.90
149 150 4.454678 TCTTGGCAGAGGTAATGCATAAG 58.545 43.478 0.00 0.00 45.68 1.73
150 151 4.164030 TCTTGGCAGAGGTAATGCATAAGA 59.836 41.667 0.00 10.72 45.68 2.10
151 152 4.502105 TGGCAGAGGTAATGCATAAGAA 57.498 40.909 0.00 0.00 45.68 2.52
152 153 4.854173 TGGCAGAGGTAATGCATAAGAAA 58.146 39.130 0.00 0.00 45.68 2.52
153 154 5.260424 TGGCAGAGGTAATGCATAAGAAAA 58.740 37.500 0.00 0.00 45.68 2.29
154 155 5.714333 TGGCAGAGGTAATGCATAAGAAAAA 59.286 36.000 0.00 0.00 45.68 1.94
175 176 5.832539 AAAAGTCCCTGAAAGAGATGAGA 57.167 39.130 0.00 0.00 34.07 3.27
176 177 5.419239 AAAGTCCCTGAAAGAGATGAGAG 57.581 43.478 0.00 0.00 34.07 3.20
177 178 3.373830 AGTCCCTGAAAGAGATGAGAGG 58.626 50.000 0.00 0.00 34.07 3.69
178 179 3.012274 AGTCCCTGAAAGAGATGAGAGGA 59.988 47.826 0.00 0.00 34.07 3.71
179 180 3.772025 GTCCCTGAAAGAGATGAGAGGAA 59.228 47.826 0.00 0.00 34.07 3.36
180 181 4.029520 TCCCTGAAAGAGATGAGAGGAAG 58.970 47.826 0.00 0.00 34.07 3.46
181 182 4.029520 CCCTGAAAGAGATGAGAGGAAGA 58.970 47.826 0.00 0.00 34.07 2.87
182 183 4.099881 CCCTGAAAGAGATGAGAGGAAGAG 59.900 50.000 0.00 0.00 34.07 2.85
183 184 4.955450 CCTGAAAGAGATGAGAGGAAGAGA 59.045 45.833 0.00 0.00 34.07 3.10
184 185 5.163519 CCTGAAAGAGATGAGAGGAAGAGAC 60.164 48.000 0.00 0.00 34.07 3.36
185 186 5.579047 TGAAAGAGATGAGAGGAAGAGACT 58.421 41.667 0.00 0.00 0.00 3.24
186 187 5.652014 TGAAAGAGATGAGAGGAAGAGACTC 59.348 44.000 0.00 0.00 35.20 3.36
187 188 3.808728 AGAGATGAGAGGAAGAGACTCG 58.191 50.000 0.00 0.00 39.90 4.18
188 189 2.878406 GAGATGAGAGGAAGAGACTCGG 59.122 54.545 0.00 0.00 39.90 4.63
189 190 2.241176 AGATGAGAGGAAGAGACTCGGT 59.759 50.000 0.00 0.00 39.90 4.69
190 191 3.456644 AGATGAGAGGAAGAGACTCGGTA 59.543 47.826 0.00 0.00 39.90 4.02
191 192 3.935818 TGAGAGGAAGAGACTCGGTAT 57.064 47.619 0.00 0.00 39.90 2.73
192 193 3.811083 TGAGAGGAAGAGACTCGGTATC 58.189 50.000 0.00 0.00 39.90 2.24
193 194 3.143728 GAGAGGAAGAGACTCGGTATCC 58.856 54.545 10.05 10.05 39.90 2.59
194 195 2.510382 AGAGGAAGAGACTCGGTATCCA 59.490 50.000 16.68 0.00 39.90 3.41
195 196 2.619646 GAGGAAGAGACTCGGTATCCAC 59.380 54.545 16.68 10.07 0.00 4.02
196 197 2.242708 AGGAAGAGACTCGGTATCCACT 59.757 50.000 16.68 0.00 0.00 4.00
197 198 3.458857 AGGAAGAGACTCGGTATCCACTA 59.541 47.826 16.68 0.00 0.00 2.74
198 199 3.816523 GGAAGAGACTCGGTATCCACTAG 59.183 52.174 12.10 0.00 0.00 2.57
199 200 2.853705 AGAGACTCGGTATCCACTAGC 58.146 52.381 0.00 0.00 0.00 3.42
200 201 2.440253 AGAGACTCGGTATCCACTAGCT 59.560 50.000 0.00 0.00 0.00 3.32
201 202 3.117813 AGAGACTCGGTATCCACTAGCTT 60.118 47.826 0.00 0.00 0.00 3.74
202 203 3.215975 AGACTCGGTATCCACTAGCTTC 58.784 50.000 0.00 0.00 0.00 3.86
203 204 2.950309 GACTCGGTATCCACTAGCTTCA 59.050 50.000 0.00 0.00 0.00 3.02
204 205 2.952978 ACTCGGTATCCACTAGCTTCAG 59.047 50.000 0.00 0.00 0.00 3.02
205 206 2.952978 CTCGGTATCCACTAGCTTCAGT 59.047 50.000 0.00 0.00 0.00 3.41
206 207 4.135306 CTCGGTATCCACTAGCTTCAGTA 58.865 47.826 0.00 0.00 0.00 2.74
207 208 4.135306 TCGGTATCCACTAGCTTCAGTAG 58.865 47.826 0.00 0.00 0.00 2.57
208 209 3.884091 CGGTATCCACTAGCTTCAGTAGT 59.116 47.826 0.00 0.00 0.00 2.73
209 210 5.061853 CGGTATCCACTAGCTTCAGTAGTA 58.938 45.833 0.00 0.00 0.00 1.82
210 211 5.179742 CGGTATCCACTAGCTTCAGTAGTAG 59.820 48.000 0.00 0.00 0.00 2.57
211 212 5.474189 GGTATCCACTAGCTTCAGTAGTAGG 59.526 48.000 0.00 0.00 0.00 3.18
212 213 4.857130 TCCACTAGCTTCAGTAGTAGGA 57.143 45.455 0.00 0.00 31.14 2.94
213 214 4.783055 TCCACTAGCTTCAGTAGTAGGAG 58.217 47.826 0.00 0.00 30.61 3.69
214 215 4.227754 TCCACTAGCTTCAGTAGTAGGAGT 59.772 45.833 0.00 0.00 30.61 3.85
215 216 4.951094 CCACTAGCTTCAGTAGTAGGAGTT 59.049 45.833 0.00 0.00 0.00 3.01
216 217 5.163602 CCACTAGCTTCAGTAGTAGGAGTTG 60.164 48.000 0.00 0.00 0.00 3.16
217 218 3.878160 AGCTTCAGTAGTAGGAGTTGC 57.122 47.619 0.00 0.00 0.00 4.17
218 219 2.498078 AGCTTCAGTAGTAGGAGTTGCC 59.502 50.000 0.00 0.00 0.00 4.52
219 220 2.418884 GCTTCAGTAGTAGGAGTTGCCC 60.419 54.545 0.00 0.00 37.37 5.36
220 221 2.615986 TCAGTAGTAGGAGTTGCCCA 57.384 50.000 0.00 0.00 37.37 5.36
221 222 3.116096 TCAGTAGTAGGAGTTGCCCAT 57.884 47.619 0.00 0.00 37.37 4.00
222 223 3.450904 TCAGTAGTAGGAGTTGCCCATT 58.549 45.455 0.00 0.00 37.37 3.16
223 224 3.197766 TCAGTAGTAGGAGTTGCCCATTG 59.802 47.826 0.00 0.00 37.37 2.82
224 225 3.055094 CAGTAGTAGGAGTTGCCCATTGT 60.055 47.826 0.00 0.00 37.37 2.71
225 226 3.587506 AGTAGTAGGAGTTGCCCATTGTT 59.412 43.478 0.00 0.00 37.37 2.83
226 227 3.073274 AGTAGGAGTTGCCCATTGTTC 57.927 47.619 0.00 0.00 37.37 3.18
227 228 2.375174 AGTAGGAGTTGCCCATTGTTCA 59.625 45.455 0.00 0.00 37.37 3.18
228 229 1.620822 AGGAGTTGCCCATTGTTCAC 58.379 50.000 0.00 0.00 37.37 3.18
229 230 0.603065 GGAGTTGCCCATTGTTCACC 59.397 55.000 0.00 0.00 0.00 4.02
230 231 1.327303 GAGTTGCCCATTGTTCACCA 58.673 50.000 0.00 0.00 0.00 4.17
231 232 1.686052 GAGTTGCCCATTGTTCACCAA 59.314 47.619 0.00 0.00 37.49 3.67
232 233 2.102252 GAGTTGCCCATTGTTCACCAAA 59.898 45.455 0.00 0.00 36.44 3.28
233 234 2.102925 AGTTGCCCATTGTTCACCAAAG 59.897 45.455 0.00 0.00 36.44 2.77
234 235 1.786937 TGCCCATTGTTCACCAAAGT 58.213 45.000 0.00 0.00 36.44 2.66
235 236 1.686052 TGCCCATTGTTCACCAAAGTC 59.314 47.619 0.00 0.00 36.44 3.01
236 237 1.335872 GCCCATTGTTCACCAAAGTCG 60.336 52.381 0.00 0.00 36.44 4.18
237 238 1.953686 CCCATTGTTCACCAAAGTCGT 59.046 47.619 0.00 0.00 36.44 4.34
238 239 2.031157 CCCATTGTTCACCAAAGTCGTC 60.031 50.000 0.00 0.00 36.44 4.20
239 240 2.616376 CCATTGTTCACCAAAGTCGTCA 59.384 45.455 0.00 0.00 36.44 4.35
240 241 3.303990 CCATTGTTCACCAAAGTCGTCAG 60.304 47.826 0.00 0.00 36.44 3.51
241 242 2.971660 TGTTCACCAAAGTCGTCAGA 57.028 45.000 0.00 0.00 0.00 3.27
242 243 2.821546 TGTTCACCAAAGTCGTCAGAG 58.178 47.619 0.00 0.00 0.00 3.35
243 244 2.429250 TGTTCACCAAAGTCGTCAGAGA 59.571 45.455 0.00 0.00 0.00 3.10
244 245 3.069586 TGTTCACCAAAGTCGTCAGAGAT 59.930 43.478 0.00 0.00 0.00 2.75
245 246 3.303881 TCACCAAAGTCGTCAGAGATG 57.696 47.619 0.00 0.00 0.00 2.90
246 247 2.029020 TCACCAAAGTCGTCAGAGATGG 60.029 50.000 0.00 0.00 33.32 3.51
247 248 2.029020 CACCAAAGTCGTCAGAGATGGA 60.029 50.000 0.00 0.00 32.19 3.41
248 249 2.632996 ACCAAAGTCGTCAGAGATGGAA 59.367 45.455 0.00 0.00 32.19 3.53
249 250 3.261897 ACCAAAGTCGTCAGAGATGGAAT 59.738 43.478 0.00 0.00 32.19 3.01
250 251 3.868077 CCAAAGTCGTCAGAGATGGAATC 59.132 47.826 0.00 0.00 46.04 2.52
280 281 1.734465 CTCATTGGACAAAGAGACGGC 59.266 52.381 10.80 0.00 38.11 5.68
285 286 4.699522 ACAAAGAGACGGCCCCGC 62.700 66.667 6.63 0.00 44.19 6.13
298 299 2.417516 CCCGCGATCGACTGGAAT 59.582 61.111 21.57 0.00 38.10 3.01
314 315 3.775208 TGGAATTGCCATCCATCCAGGA 61.775 50.000 0.00 0.00 43.33 3.86
333 334 4.698780 CAGGATTTGATGAGTCAAGAGCAA 59.301 41.667 0.00 0.00 44.62 3.91
334 335 4.942483 AGGATTTGATGAGTCAAGAGCAAG 59.058 41.667 0.00 0.00 44.62 4.01
385 386 3.317455 TGCAAGGCAGGATCCATATTT 57.683 42.857 15.82 0.00 33.32 1.40
406 407 1.537889 TGGGGGAACTCACGTGGAT 60.538 57.895 17.00 0.50 34.24 3.41
444 445 0.251341 GCCCCCAACTGATCTGTGTT 60.251 55.000 5.96 0.14 0.00 3.32
448 449 1.614317 CCCAACTGATCTGTGTTCCCC 60.614 57.143 5.96 0.00 0.00 4.81
450 451 1.001974 CAACTGATCTGTGTTCCCCGA 59.998 52.381 5.96 0.00 0.00 5.14
454 455 0.895530 GATCTGTGTTCCCCGACTGA 59.104 55.000 0.00 0.00 0.00 3.41
470 471 5.705905 CCCGACTGATCTTTTTAAAAGACCT 59.294 40.000 20.54 7.67 0.00 3.85
471 472 6.348540 CCCGACTGATCTTTTTAAAAGACCTG 60.349 42.308 20.54 17.28 0.00 4.00
472 473 6.204882 CCGACTGATCTTTTTAAAAGACCTGT 59.795 38.462 19.65 19.65 0.00 4.00
473 474 7.255139 CCGACTGATCTTTTTAAAAGACCTGTT 60.255 37.037 20.24 7.72 0.00 3.16
476 477 7.049799 TGATCTTTTTAAAAGACCTGTTGGG 57.950 36.000 20.54 0.00 41.89 4.12
487 488 3.865929 CTGTTGGGTCGCGAGCTGT 62.866 63.158 34.07 0.00 0.00 4.40
493 494 1.138883 GGTCGCGAGCTGTCACATA 59.861 57.895 29.66 0.00 0.00 2.29
495 496 0.848942 GTCGCGAGCTGTCACATATG 59.151 55.000 10.24 0.00 0.00 1.78
496 497 0.738389 TCGCGAGCTGTCACATATGA 59.262 50.000 3.71 0.00 0.00 2.15
509 510 0.710567 CATATGACGATTCGAGCGGC 59.289 55.000 13.95 10.96 37.28 6.53
510 511 0.388649 ATATGACGATTCGAGCGGCC 60.389 55.000 13.95 0.00 35.47 6.13
524 525 4.424566 GGCCGAACGACGCCTACA 62.425 66.667 0.00 0.00 41.07 2.74
526 527 2.564975 CCGAACGACGCCTACACT 59.435 61.111 0.00 0.00 41.07 3.55
536 537 3.194861 GACGCCTACACTATTGCAATGA 58.805 45.455 22.27 5.42 0.00 2.57
537 538 3.198068 ACGCCTACACTATTGCAATGAG 58.802 45.455 22.27 16.05 0.00 2.90
538 539 3.198068 CGCCTACACTATTGCAATGAGT 58.802 45.455 22.27 17.77 0.00 3.41
539 540 3.246226 CGCCTACACTATTGCAATGAGTC 59.754 47.826 22.27 7.96 0.00 3.36
541 542 4.878397 GCCTACACTATTGCAATGAGTCTT 59.122 41.667 22.27 11.64 0.00 3.01
542 543 5.220739 GCCTACACTATTGCAATGAGTCTTG 60.221 44.000 22.27 11.15 0.00 3.02
597 600 5.830912 TGCAGATTTCTTTACAACAAGGTG 58.169 37.500 0.00 0.00 0.00 4.00
634 640 4.462508 TTTTCAACAAAGACCATGTGCA 57.537 36.364 0.00 0.00 0.00 4.57
638 644 4.825422 TCAACAAAGACCATGTGCAAAAA 58.175 34.783 0.00 0.00 0.00 1.94
702 713 4.090057 GCGGTTGCGGTTGAGCTC 62.090 66.667 6.82 6.82 38.13 4.09
703 714 3.777925 CGGTTGCGGTTGAGCTCG 61.778 66.667 9.64 0.00 38.13 5.03
704 715 2.357034 GGTTGCGGTTGAGCTCGA 60.357 61.111 9.64 3.88 38.13 4.04
705 716 2.383527 GGTTGCGGTTGAGCTCGAG 61.384 63.158 8.45 8.45 38.13 4.04
706 717 2.048222 TTGCGGTTGAGCTCGAGG 60.048 61.111 15.58 3.40 38.13 4.63
707 718 2.570284 TTGCGGTTGAGCTCGAGGA 61.570 57.895 15.58 0.00 38.13 3.71
708 719 2.202676 GCGGTTGAGCTCGAGGAG 60.203 66.667 15.58 2.69 0.00 3.69
709 720 2.492090 CGGTTGAGCTCGAGGAGG 59.508 66.667 15.58 0.00 0.00 4.30
710 721 2.185608 GGTTGAGCTCGAGGAGGC 59.814 66.667 15.58 0.00 0.00 4.70
711 722 2.202676 GTTGAGCTCGAGGAGGCG 60.203 66.667 15.58 0.00 0.00 5.52
712 723 3.452786 TTGAGCTCGAGGAGGCGG 61.453 66.667 15.58 0.00 0.00 6.13
726 737 2.897350 GCGGCAGCCATAGACACC 60.897 66.667 13.30 0.00 37.42 4.16
727 738 2.586079 CGGCAGCCATAGACACCG 60.586 66.667 13.30 0.00 0.00 4.94
728 739 2.203070 GGCAGCCATAGACACCGG 60.203 66.667 6.55 0.00 0.00 5.28
736 747 0.537188 CATAGACACCGGTGCTCCTT 59.463 55.000 34.26 15.00 0.00 3.36
737 748 1.066143 CATAGACACCGGTGCTCCTTT 60.066 52.381 34.26 19.36 0.00 3.11
745 756 1.449778 GGTGCTCCTTTAGGACGGC 60.450 63.158 0.00 0.00 46.95 5.68
749 760 2.998480 TCCTTTAGGACGGCGGCA 60.998 61.111 17.61 0.00 39.78 5.69
765 776 3.098555 CAACGTGGAATAGCGGGC 58.901 61.111 0.00 0.00 0.00 6.13
766 777 1.743623 CAACGTGGAATAGCGGGCA 60.744 57.895 0.00 0.00 0.00 5.36
769 780 2.895372 GTGGAATAGCGGGCACGG 60.895 66.667 11.92 0.00 41.36 4.94
918 1061 4.346730 TCCGTGGGTGATTAGAAGAGTTA 58.653 43.478 0.00 0.00 0.00 2.24
919 1062 4.773674 TCCGTGGGTGATTAGAAGAGTTAA 59.226 41.667 0.00 0.00 0.00 2.01
920 1063 5.246656 TCCGTGGGTGATTAGAAGAGTTAAA 59.753 40.000 0.00 0.00 0.00 1.52
922 1065 6.428771 CCGTGGGTGATTAGAAGAGTTAAAAA 59.571 38.462 0.00 0.00 0.00 1.94
971 1117 1.209747 GATGAGCCGACCCTAAAACCT 59.790 52.381 0.00 0.00 0.00 3.50
979 1125 0.689055 ACCCTAAAACCTCCGTCACC 59.311 55.000 0.00 0.00 0.00 4.02
986 1132 4.760047 CCTCCGTCACCTTGCCCG 62.760 72.222 0.00 0.00 0.00 6.13
987 1133 4.760047 CTCCGTCACCTTGCCCGG 62.760 72.222 0.00 0.00 41.75 5.73
1128 1278 1.302431 CACGACATCCCAAGCACCA 60.302 57.895 0.00 0.00 0.00 4.17
1130 1280 0.677731 ACGACATCCCAAGCACCATG 60.678 55.000 0.00 0.00 0.00 3.66
1155 1305 2.282958 ACCTCTTCGGCTCCGTCA 60.283 61.111 8.28 0.00 40.74 4.35
1254 1404 2.772691 CCGCCAGTCCTCTCGTACC 61.773 68.421 0.00 0.00 0.00 3.34
1377 1527 4.329545 GGTCGGCCAGGTTCAGCA 62.330 66.667 0.00 0.00 34.09 4.41
1465 1615 2.125147 CGCTCCCCATCGCTTTGA 60.125 61.111 0.00 0.00 0.00 2.69
1469 1619 1.066152 GCTCCCCATCGCTTTGAATTC 59.934 52.381 0.00 0.00 0.00 2.17
1477 1627 2.159382 TCGCTTTGAATTCCAAGACCC 58.841 47.619 20.41 4.82 35.94 4.46
1572 1722 1.871080 CAAGTTCACCTTCACGCTCT 58.129 50.000 0.00 0.00 0.00 4.09
1586 1736 1.734748 GCTCTACCTGTACCGCTCC 59.265 63.158 0.00 0.00 0.00 4.70
1652 1802 2.841988 GAGGAGCCGCTGAGGGAT 60.842 66.667 0.00 0.00 41.48 3.85
1796 1946 4.400109 TGCGACGTGCTCGAGGAC 62.400 66.667 25.53 25.53 46.14 3.85
1878 2037 3.135056 GACGGCTGCCCCTACTACG 62.135 68.421 14.12 0.77 0.00 3.51
1880 2039 4.237207 GGCTGCCCCTACTACGCC 62.237 72.222 7.66 0.00 0.00 5.68
1925 2084 2.993899 CAAGGACACCATCAAGTACGTC 59.006 50.000 0.00 0.00 0.00 4.34
1946 2105 2.890311 CGAGATGGAGATCTACCAAGCT 59.110 50.000 15.14 14.61 39.19 3.74
1948 2107 4.704540 CGAGATGGAGATCTACCAAGCTAT 59.295 45.833 15.14 0.00 39.19 2.97
1958 2117 1.486211 ACCAAGCTATACCGCTCACT 58.514 50.000 0.00 0.00 39.86 3.41
1973 2132 3.382832 ACTCCCGAGGACAAGGCG 61.383 66.667 0.00 0.00 0.00 5.52
1974 2133 4.821589 CTCCCGAGGACAAGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
1979 2138 2.456119 CGAGGACAAGGCGCATCAC 61.456 63.158 10.83 0.00 0.00 3.06
2019 2178 2.332063 ATGCCCGATGTACTTCTTGG 57.668 50.000 7.13 8.09 0.00 3.61
2170 2329 0.391130 ATAAGAAGCTGCGCACGGAA 60.391 50.000 5.66 0.00 0.00 4.30
2315 2477 0.460109 CGCCGTTGACATGAGGATGA 60.460 55.000 0.00 0.00 33.36 2.92
2318 2480 2.283298 CCGTTGACATGAGGATGAAGG 58.717 52.381 0.00 0.00 33.36 3.46
2430 2592 4.718961 ACTGGCAGTACAAGTGAAGAATT 58.281 39.130 20.61 0.00 0.00 2.17
2493 2655 6.942532 TCAAGAAAGTACATGAGTTTGCTT 57.057 33.333 0.00 0.00 30.41 3.91
2494 2656 7.333528 TCAAGAAAGTACATGAGTTTGCTTT 57.666 32.000 0.00 0.00 30.41 3.51
2495 2657 8.445275 TCAAGAAAGTACATGAGTTTGCTTTA 57.555 30.769 0.00 0.00 30.41 1.85
2575 2737 0.394352 CAGGCGCAGGGTTAATCCTT 60.394 55.000 10.83 0.00 34.31 3.36
2576 2738 0.331616 AGGCGCAGGGTTAATCCTTT 59.668 50.000 10.83 0.00 34.31 3.11
2641 2803 6.902341 TGTGTCTTTCATTTGCTCAGATTAC 58.098 36.000 0.00 0.00 0.00 1.89
2642 2804 6.072508 TGTGTCTTTCATTTGCTCAGATTACC 60.073 38.462 0.00 0.00 0.00 2.85
2643 2805 5.122239 TGTCTTTCATTTGCTCAGATTACCG 59.878 40.000 0.00 0.00 0.00 4.02
2644 2806 5.351465 GTCTTTCATTTGCTCAGATTACCGA 59.649 40.000 0.00 0.00 0.00 4.69
2645 2807 5.582269 TCTTTCATTTGCTCAGATTACCGAG 59.418 40.000 0.00 0.00 0.00 4.63
2646 2808 4.736126 TCATTTGCTCAGATTACCGAGA 57.264 40.909 0.00 0.00 0.00 4.04
2647 2809 5.084818 TCATTTGCTCAGATTACCGAGAA 57.915 39.130 0.00 0.00 0.00 2.87
2648 2810 5.487433 TCATTTGCTCAGATTACCGAGAAA 58.513 37.500 0.00 0.00 0.00 2.52
2649 2811 5.937540 TCATTTGCTCAGATTACCGAGAAAA 59.062 36.000 0.00 0.00 40.30 2.29
2650 2812 5.862924 TTTGCTCAGATTACCGAGAAAAG 57.137 39.130 0.00 0.00 32.84 2.27
2670 2832 4.511617 AGATCTACCGTGCATGTATCAG 57.488 45.455 4.96 0.00 0.00 2.90
2671 2833 2.509052 TCTACCGTGCATGTATCAGC 57.491 50.000 4.96 0.00 0.00 4.26
2673 2835 0.827368 TACCGTGCATGTATCAGCCA 59.173 50.000 4.96 0.00 0.00 4.75
2674 2836 0.744414 ACCGTGCATGTATCAGCCAC 60.744 55.000 4.96 0.00 0.00 5.01
2675 2837 0.462581 CCGTGCATGTATCAGCCACT 60.463 55.000 4.96 0.00 0.00 4.00
2756 2925 7.956420 TTCAGTAGTTAACGTCATGTCAATT 57.044 32.000 0.00 0.00 0.00 2.32
2771 2940 4.385825 TGTCAATTAGTCACCTTTTCGCT 58.614 39.130 0.00 0.00 0.00 4.93
3162 3400 0.386605 TTAGCGGTTTTGCATGCACG 60.387 50.000 22.58 21.27 37.31 5.34
3252 3491 0.389948 CGGTAGTTTTGCCGCTCTCT 60.390 55.000 0.00 0.00 45.45 3.10
3255 3494 2.413837 GTAGTTTTGCCGCTCTCTTCA 58.586 47.619 0.00 0.00 0.00 3.02
3256 3495 1.517242 AGTTTTGCCGCTCTCTTCAG 58.483 50.000 0.00 0.00 0.00 3.02
3257 3496 1.070758 AGTTTTGCCGCTCTCTTCAGA 59.929 47.619 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.262637 TCCGTCCAAAATGTACCTCCT 58.737 47.619 0.00 0.00 0.00 3.69
2 3 3.374058 CACATCCGTCCAAAATGTACCTC 59.626 47.826 0.00 0.00 32.54 3.85
3 4 3.244770 ACACATCCGTCCAAAATGTACCT 60.245 43.478 0.00 0.00 32.54 3.08
4 5 3.078837 ACACATCCGTCCAAAATGTACC 58.921 45.455 0.00 0.00 32.54 3.34
6 7 6.882140 AGAATTACACATCCGTCCAAAATGTA 59.118 34.615 0.00 0.00 32.54 2.29
7 8 5.710099 AGAATTACACATCCGTCCAAAATGT 59.290 36.000 0.00 0.00 34.03 2.71
8 9 6.194796 AGAATTACACATCCGTCCAAAATG 57.805 37.500 0.00 0.00 0.00 2.32
10 11 5.765677 TGAAGAATTACACATCCGTCCAAAA 59.234 36.000 0.00 0.00 0.00 2.44
11 12 5.309638 TGAAGAATTACACATCCGTCCAAA 58.690 37.500 0.00 0.00 0.00 3.28
12 13 4.900684 TGAAGAATTACACATCCGTCCAA 58.099 39.130 0.00 0.00 0.00 3.53
13 14 4.545208 TGAAGAATTACACATCCGTCCA 57.455 40.909 0.00 0.00 0.00 4.02
14 15 5.116180 TCATGAAGAATTACACATCCGTCC 58.884 41.667 0.00 0.00 0.00 4.79
15 16 6.313905 ACTTCATGAAGAATTACACATCCGTC 59.686 38.462 36.15 0.00 40.79 4.79
16 17 6.173339 ACTTCATGAAGAATTACACATCCGT 58.827 36.000 36.15 11.28 40.79 4.69
17 18 6.668541 ACTTCATGAAGAATTACACATCCG 57.331 37.500 36.15 10.66 40.79 4.18
18 19 9.132521 CAAAACTTCATGAAGAATTACACATCC 57.867 33.333 36.15 0.00 40.79 3.51
19 20 8.642020 GCAAAACTTCATGAAGAATTACACATC 58.358 33.333 36.15 13.58 40.79 3.06
20 21 8.143193 TGCAAAACTTCATGAAGAATTACACAT 58.857 29.630 36.15 12.32 40.79 3.21
21 22 7.487484 TGCAAAACTTCATGAAGAATTACACA 58.513 30.769 36.15 23.42 40.79 3.72
22 23 7.928908 TGCAAAACTTCATGAAGAATTACAC 57.071 32.000 36.15 21.79 40.79 2.90
23 24 8.358895 TCATGCAAAACTTCATGAAGAATTACA 58.641 29.630 36.15 27.63 44.08 2.41
24 25 8.746922 TCATGCAAAACTTCATGAAGAATTAC 57.253 30.769 36.15 24.08 44.08 1.89
25 26 8.579006 ACTCATGCAAAACTTCATGAAGAATTA 58.421 29.630 36.15 19.09 45.64 1.40
26 27 7.439381 ACTCATGCAAAACTTCATGAAGAATT 58.561 30.769 36.15 26.55 45.64 2.17
27 28 6.989659 ACTCATGCAAAACTTCATGAAGAAT 58.010 32.000 36.15 23.06 45.64 2.40
28 29 6.395426 ACTCATGCAAAACTTCATGAAGAA 57.605 33.333 36.15 16.89 45.64 2.52
29 30 6.039605 TCAACTCATGCAAAACTTCATGAAGA 59.960 34.615 36.15 17.04 45.64 2.87
30 31 6.210796 TCAACTCATGCAAAACTTCATGAAG 58.789 36.000 29.74 29.74 45.64 3.02
31 32 6.146601 TCAACTCATGCAAAACTTCATGAA 57.853 33.333 8.12 8.12 45.64 2.57
32 33 5.771153 TCAACTCATGCAAAACTTCATGA 57.229 34.783 0.00 0.00 44.62 3.07
33 34 6.831727 TTTCAACTCATGCAAAACTTCATG 57.168 33.333 0.00 0.00 40.92 3.07
34 35 7.929785 AGATTTTCAACTCATGCAAAACTTCAT 59.070 29.630 0.00 0.00 26.11 2.57
35 36 7.267128 AGATTTTCAACTCATGCAAAACTTCA 58.733 30.769 0.00 0.00 26.11 3.02
36 37 7.650903 AGAGATTTTCAACTCATGCAAAACTTC 59.349 33.333 0.00 0.00 29.93 3.01
37 38 7.495055 AGAGATTTTCAACTCATGCAAAACTT 58.505 30.769 0.00 0.00 29.93 2.66
38 39 7.047460 AGAGATTTTCAACTCATGCAAAACT 57.953 32.000 0.00 0.00 31.82 2.66
39 40 6.919662 TGAGAGATTTTCAACTCATGCAAAAC 59.080 34.615 0.00 0.00 35.01 2.43
40 41 6.919662 GTGAGAGATTTTCAACTCATGCAAAA 59.080 34.615 0.00 0.00 40.61 2.44
41 42 6.263842 AGTGAGAGATTTTCAACTCATGCAAA 59.736 34.615 0.00 0.00 40.61 3.68
42 43 5.766670 AGTGAGAGATTTTCAACTCATGCAA 59.233 36.000 0.00 0.00 40.61 4.08
43 44 5.311265 AGTGAGAGATTTTCAACTCATGCA 58.689 37.500 0.00 0.00 40.61 3.96
44 45 5.642919 AGAGTGAGAGATTTTCAACTCATGC 59.357 40.000 0.00 0.00 41.06 4.06
45 46 8.768957 TTAGAGTGAGAGATTTTCAACTCATG 57.231 34.615 0.00 0.00 41.06 3.07
46 47 9.434420 CTTTAGAGTGAGAGATTTTCAACTCAT 57.566 33.333 0.00 0.00 41.06 2.90
47 48 7.875041 CCTTTAGAGTGAGAGATTTTCAACTCA 59.125 37.037 10.63 0.00 41.06 3.41
48 49 8.091449 TCCTTTAGAGTGAGAGATTTTCAACTC 58.909 37.037 0.00 0.00 39.90 3.01
49 50 7.967908 TCCTTTAGAGTGAGAGATTTTCAACT 58.032 34.615 0.00 0.00 0.00 3.16
50 51 8.608844 TTCCTTTAGAGTGAGAGATTTTCAAC 57.391 34.615 0.00 0.00 0.00 3.18
51 52 9.799106 AATTCCTTTAGAGTGAGAGATTTTCAA 57.201 29.630 0.00 0.00 0.00 2.69
52 53 9.799106 AAATTCCTTTAGAGTGAGAGATTTTCA 57.201 29.630 0.00 0.00 0.00 2.69
55 56 8.518702 GCAAAATTCCTTTAGAGTGAGAGATTT 58.481 33.333 0.00 0.00 0.00 2.17
56 57 7.887495 AGCAAAATTCCTTTAGAGTGAGAGATT 59.113 33.333 0.00 0.00 0.00 2.40
57 58 7.401246 AGCAAAATTCCTTTAGAGTGAGAGAT 58.599 34.615 0.00 0.00 0.00 2.75
58 59 6.773638 AGCAAAATTCCTTTAGAGTGAGAGA 58.226 36.000 0.00 0.00 0.00 3.10
59 60 7.173907 TGAAGCAAAATTCCTTTAGAGTGAGAG 59.826 37.037 0.00 0.00 0.00 3.20
60 61 6.998074 TGAAGCAAAATTCCTTTAGAGTGAGA 59.002 34.615 0.00 0.00 0.00 3.27
61 62 7.040823 ACTGAAGCAAAATTCCTTTAGAGTGAG 60.041 37.037 10.29 0.00 31.43 3.51
62 63 6.772716 ACTGAAGCAAAATTCCTTTAGAGTGA 59.227 34.615 10.29 0.00 31.43 3.41
63 64 6.974965 ACTGAAGCAAAATTCCTTTAGAGTG 58.025 36.000 10.29 0.00 31.43 3.51
64 65 7.428826 CAACTGAAGCAAAATTCCTTTAGAGT 58.571 34.615 10.29 0.00 31.43 3.24
65 66 6.865205 CCAACTGAAGCAAAATTCCTTTAGAG 59.135 38.462 10.29 0.00 31.43 2.43
66 67 6.549364 TCCAACTGAAGCAAAATTCCTTTAGA 59.451 34.615 10.29 0.00 31.43 2.10
67 68 6.748132 TCCAACTGAAGCAAAATTCCTTTAG 58.252 36.000 0.00 0.00 32.71 1.85
68 69 6.723298 TCCAACTGAAGCAAAATTCCTTTA 57.277 33.333 0.00 0.00 0.00 1.85
69 70 5.612725 TCCAACTGAAGCAAAATTCCTTT 57.387 34.783 0.00 0.00 0.00 3.11
70 71 5.813513 ATCCAACTGAAGCAAAATTCCTT 57.186 34.783 0.00 0.00 0.00 3.36
71 72 5.813513 AATCCAACTGAAGCAAAATTCCT 57.186 34.783 0.00 0.00 0.00 3.36
72 73 6.482973 TCAAAATCCAACTGAAGCAAAATTCC 59.517 34.615 0.00 0.00 0.00 3.01
73 74 7.481275 TCAAAATCCAACTGAAGCAAAATTC 57.519 32.000 0.00 0.00 0.00 2.17
74 75 7.862512 TTCAAAATCCAACTGAAGCAAAATT 57.137 28.000 0.00 0.00 0.00 1.82
75 76 7.862512 TTTCAAAATCCAACTGAAGCAAAAT 57.137 28.000 0.00 0.00 31.11 1.82
76 77 7.678947 TTTTCAAAATCCAACTGAAGCAAAA 57.321 28.000 0.00 0.00 31.11 2.44
77 78 7.626028 GCTTTTTCAAAATCCAACTGAAGCAAA 60.626 33.333 0.00 0.00 36.65 3.68
78 79 6.183360 GCTTTTTCAAAATCCAACTGAAGCAA 60.183 34.615 0.00 0.00 36.65 3.91
79 80 5.294060 GCTTTTTCAAAATCCAACTGAAGCA 59.706 36.000 0.00 0.00 36.65 3.91
80 81 5.525012 AGCTTTTTCAAAATCCAACTGAAGC 59.475 36.000 0.00 0.00 36.84 3.86
81 82 7.543947 AAGCTTTTTCAAAATCCAACTGAAG 57.456 32.000 0.00 0.00 31.11 3.02
82 83 9.044150 CATAAGCTTTTTCAAAATCCAACTGAA 57.956 29.630 3.20 0.00 0.00 3.02
83 84 8.420222 TCATAAGCTTTTTCAAAATCCAACTGA 58.580 29.630 3.20 0.00 0.00 3.41
84 85 8.592105 TCATAAGCTTTTTCAAAATCCAACTG 57.408 30.769 3.20 0.00 0.00 3.16
94 95 9.507329 ACTGAACTCTATCATAAGCTTTTTCAA 57.493 29.630 3.20 0.00 0.00 2.69
97 98 9.103861 GCTACTGAACTCTATCATAAGCTTTTT 57.896 33.333 3.20 0.00 35.61 1.94
98 99 8.482128 AGCTACTGAACTCTATCATAAGCTTTT 58.518 33.333 3.20 0.00 41.09 2.27
99 100 8.017418 AGCTACTGAACTCTATCATAAGCTTT 57.983 34.615 3.20 0.00 41.09 3.51
100 101 7.595819 AGCTACTGAACTCTATCATAAGCTT 57.404 36.000 3.48 3.48 41.09 3.74
101 102 7.595819 AAGCTACTGAACTCTATCATAAGCT 57.404 36.000 7.38 7.38 43.51 3.74
102 103 8.655651 AAAAGCTACTGAACTCTATCATAAGC 57.344 34.615 0.00 0.00 37.29 3.09
105 106 9.809096 CAAGAAAAGCTACTGAACTCTATCATA 57.191 33.333 0.00 0.00 0.00 2.15
106 107 7.768120 CCAAGAAAAGCTACTGAACTCTATCAT 59.232 37.037 0.00 0.00 0.00 2.45
107 108 7.099764 CCAAGAAAAGCTACTGAACTCTATCA 58.900 38.462 0.00 0.00 0.00 2.15
108 109 6.036626 GCCAAGAAAAGCTACTGAACTCTATC 59.963 42.308 0.00 0.00 0.00 2.08
109 110 5.877564 GCCAAGAAAAGCTACTGAACTCTAT 59.122 40.000 0.00 0.00 0.00 1.98
110 111 5.221641 TGCCAAGAAAAGCTACTGAACTCTA 60.222 40.000 0.00 0.00 0.00 2.43
111 112 4.068599 GCCAAGAAAAGCTACTGAACTCT 58.931 43.478 0.00 0.00 0.00 3.24
112 113 3.815401 TGCCAAGAAAAGCTACTGAACTC 59.185 43.478 0.00 0.00 0.00 3.01
113 114 3.817647 CTGCCAAGAAAAGCTACTGAACT 59.182 43.478 0.00 0.00 0.00 3.01
114 115 3.815401 TCTGCCAAGAAAAGCTACTGAAC 59.185 43.478 0.00 0.00 0.00 3.18
115 116 4.067896 CTCTGCCAAGAAAAGCTACTGAA 58.932 43.478 0.00 0.00 30.03 3.02
116 117 3.557898 CCTCTGCCAAGAAAAGCTACTGA 60.558 47.826 0.00 0.00 30.03 3.41
117 118 2.746362 CCTCTGCCAAGAAAAGCTACTG 59.254 50.000 0.00 0.00 30.03 2.74
118 119 2.373502 ACCTCTGCCAAGAAAAGCTACT 59.626 45.455 0.00 0.00 30.03 2.57
119 120 2.784347 ACCTCTGCCAAGAAAAGCTAC 58.216 47.619 0.00 0.00 30.03 3.58
120 121 4.634012 TTACCTCTGCCAAGAAAAGCTA 57.366 40.909 0.00 0.00 30.03 3.32
121 122 3.508845 TTACCTCTGCCAAGAAAAGCT 57.491 42.857 0.00 0.00 30.03 3.74
122 123 3.674410 GCATTACCTCTGCCAAGAAAAGC 60.674 47.826 0.00 0.00 33.44 3.51
123 124 3.507233 TGCATTACCTCTGCCAAGAAAAG 59.493 43.478 0.00 0.00 38.89 2.27
124 125 3.495331 TGCATTACCTCTGCCAAGAAAA 58.505 40.909 0.00 0.00 38.89 2.29
125 126 3.153369 TGCATTACCTCTGCCAAGAAA 57.847 42.857 0.00 0.00 38.89 2.52
126 127 2.877097 TGCATTACCTCTGCCAAGAA 57.123 45.000 0.00 0.00 38.89 2.52
127 128 4.164030 TCTTATGCATTACCTCTGCCAAGA 59.836 41.667 3.54 0.39 38.89 3.02
128 129 4.454678 TCTTATGCATTACCTCTGCCAAG 58.545 43.478 3.54 0.00 38.89 3.61
129 130 4.502105 TCTTATGCATTACCTCTGCCAA 57.498 40.909 3.54 0.00 38.89 4.52
130 131 4.502105 TTCTTATGCATTACCTCTGCCA 57.498 40.909 3.54 0.00 38.89 4.92
131 132 5.835113 TTTTCTTATGCATTACCTCTGCC 57.165 39.130 3.54 0.00 38.89 4.85
152 153 6.192970 TCTCATCTCTTTCAGGGACTTTTT 57.807 37.500 0.00 0.00 34.60 1.94
153 154 5.280419 CCTCTCATCTCTTTCAGGGACTTTT 60.280 44.000 0.00 0.00 34.60 2.27
154 155 4.224818 CCTCTCATCTCTTTCAGGGACTTT 59.775 45.833 0.00 0.00 34.60 2.66
155 156 3.774216 CCTCTCATCTCTTTCAGGGACTT 59.226 47.826 0.00 0.00 34.60 3.01
156 157 3.012274 TCCTCTCATCTCTTTCAGGGACT 59.988 47.826 0.00 0.00 43.88 3.85
157 158 3.370104 TCCTCTCATCTCTTTCAGGGAC 58.630 50.000 0.00 0.00 0.00 4.46
158 159 3.765432 TCCTCTCATCTCTTTCAGGGA 57.235 47.619 0.00 0.00 0.00 4.20
159 160 4.029520 TCTTCCTCTCATCTCTTTCAGGG 58.970 47.826 0.00 0.00 0.00 4.45
160 161 4.955450 TCTCTTCCTCTCATCTCTTTCAGG 59.045 45.833 0.00 0.00 0.00 3.86
161 162 5.653769 AGTCTCTTCCTCTCATCTCTTTCAG 59.346 44.000 0.00 0.00 0.00 3.02
162 163 5.579047 AGTCTCTTCCTCTCATCTCTTTCA 58.421 41.667 0.00 0.00 0.00 2.69
163 164 5.220854 CGAGTCTCTTCCTCTCATCTCTTTC 60.221 48.000 0.00 0.00 0.00 2.62
164 165 4.640201 CGAGTCTCTTCCTCTCATCTCTTT 59.360 45.833 0.00 0.00 0.00 2.52
165 166 4.199310 CGAGTCTCTTCCTCTCATCTCTT 58.801 47.826 0.00 0.00 0.00 2.85
166 167 3.433598 CCGAGTCTCTTCCTCTCATCTCT 60.434 52.174 0.00 0.00 0.00 3.10
167 168 2.878406 CCGAGTCTCTTCCTCTCATCTC 59.122 54.545 0.00 0.00 0.00 2.75
168 169 2.241176 ACCGAGTCTCTTCCTCTCATCT 59.759 50.000 0.00 0.00 0.00 2.90
169 170 2.650322 ACCGAGTCTCTTCCTCTCATC 58.350 52.381 0.00 0.00 0.00 2.92
170 171 2.818751 ACCGAGTCTCTTCCTCTCAT 57.181 50.000 0.00 0.00 0.00 2.90
171 172 3.433882 GGATACCGAGTCTCTTCCTCTCA 60.434 52.174 0.00 0.00 0.00 3.27
172 173 3.143728 GGATACCGAGTCTCTTCCTCTC 58.856 54.545 0.00 0.00 0.00 3.20
173 174 2.510382 TGGATACCGAGTCTCTTCCTCT 59.490 50.000 0.00 0.00 0.00 3.69
174 175 2.619646 GTGGATACCGAGTCTCTTCCTC 59.380 54.545 0.00 0.00 0.00 3.71
175 176 2.242708 AGTGGATACCGAGTCTCTTCCT 59.757 50.000 0.00 0.00 0.00 3.36
176 177 2.657143 AGTGGATACCGAGTCTCTTCC 58.343 52.381 0.00 0.45 0.00 3.46
177 178 3.251487 GCTAGTGGATACCGAGTCTCTTC 59.749 52.174 0.00 0.00 0.00 2.87
178 179 3.117813 AGCTAGTGGATACCGAGTCTCTT 60.118 47.826 0.00 0.00 0.00 2.85
179 180 2.440253 AGCTAGTGGATACCGAGTCTCT 59.560 50.000 0.00 0.00 0.00 3.10
180 181 2.853705 AGCTAGTGGATACCGAGTCTC 58.146 52.381 0.00 0.00 0.00 3.36
181 182 3.215975 GAAGCTAGTGGATACCGAGTCT 58.784 50.000 0.00 0.00 0.00 3.24
182 183 2.950309 TGAAGCTAGTGGATACCGAGTC 59.050 50.000 0.00 0.00 0.00 3.36
183 184 2.952978 CTGAAGCTAGTGGATACCGAGT 59.047 50.000 0.00 0.00 0.00 4.18
184 185 2.952978 ACTGAAGCTAGTGGATACCGAG 59.047 50.000 0.00 0.00 0.00 4.63
185 186 3.014304 ACTGAAGCTAGTGGATACCGA 57.986 47.619 0.00 0.00 0.00 4.69
186 187 3.884091 ACTACTGAAGCTAGTGGATACCG 59.116 47.826 6.98 0.00 33.82 4.02
187 188 5.474189 CCTACTACTGAAGCTAGTGGATACC 59.526 48.000 6.98 0.00 33.82 2.73
188 189 6.297582 TCCTACTACTGAAGCTAGTGGATAC 58.702 44.000 6.98 0.00 33.82 2.24
189 190 6.101442 ACTCCTACTACTGAAGCTAGTGGATA 59.899 42.308 6.98 0.00 33.82 2.59
190 191 5.103855 ACTCCTACTACTGAAGCTAGTGGAT 60.104 44.000 6.98 0.00 33.82 3.41
191 192 4.227754 ACTCCTACTACTGAAGCTAGTGGA 59.772 45.833 6.98 5.99 33.82 4.02
192 193 4.528920 ACTCCTACTACTGAAGCTAGTGG 58.471 47.826 0.00 0.00 35.53 4.00
193 194 5.677598 GCAACTCCTACTACTGAAGCTAGTG 60.678 48.000 0.00 0.00 32.19 2.74
194 195 4.399934 GCAACTCCTACTACTGAAGCTAGT 59.600 45.833 0.00 0.00 34.71 2.57
195 196 4.202070 GGCAACTCCTACTACTGAAGCTAG 60.202 50.000 0.00 0.00 0.00 3.42
196 197 3.700038 GGCAACTCCTACTACTGAAGCTA 59.300 47.826 0.00 0.00 0.00 3.32
197 198 2.498078 GGCAACTCCTACTACTGAAGCT 59.502 50.000 0.00 0.00 0.00 3.74
198 199 2.418884 GGGCAACTCCTACTACTGAAGC 60.419 54.545 0.00 0.00 34.39 3.86
199 200 2.832129 TGGGCAACTCCTACTACTGAAG 59.168 50.000 0.00 0.00 34.39 3.02
200 201 2.897350 TGGGCAACTCCTACTACTGAA 58.103 47.619 0.00 0.00 34.39 3.02
201 202 2.615986 TGGGCAACTCCTACTACTGA 57.384 50.000 0.00 0.00 34.39 3.41
202 203 3.055094 ACAATGGGCAACTCCTACTACTG 60.055 47.826 0.00 0.00 34.39 2.74
203 204 3.182152 ACAATGGGCAACTCCTACTACT 58.818 45.455 0.00 0.00 34.39 2.57
204 205 3.629142 ACAATGGGCAACTCCTACTAC 57.371 47.619 0.00 0.00 34.39 2.73
205 206 3.585289 TGAACAATGGGCAACTCCTACTA 59.415 43.478 0.00 0.00 34.39 1.82
206 207 2.375174 TGAACAATGGGCAACTCCTACT 59.625 45.455 0.00 0.00 34.39 2.57
207 208 2.488153 GTGAACAATGGGCAACTCCTAC 59.512 50.000 0.00 0.00 34.39 3.18
208 209 2.554344 GGTGAACAATGGGCAACTCCTA 60.554 50.000 0.00 0.00 34.39 2.94
209 210 1.620822 GTGAACAATGGGCAACTCCT 58.379 50.000 0.00 0.00 34.39 3.69
210 211 0.603065 GGTGAACAATGGGCAACTCC 59.397 55.000 0.00 0.00 0.00 3.85
211 212 1.327303 TGGTGAACAATGGGCAACTC 58.673 50.000 0.00 0.00 0.00 3.01
212 213 1.786937 TTGGTGAACAATGGGCAACT 58.213 45.000 0.00 0.00 33.18 3.16
213 214 2.158971 ACTTTGGTGAACAATGGGCAAC 60.159 45.455 1.12 0.00 39.21 4.17
214 215 2.102252 GACTTTGGTGAACAATGGGCAA 59.898 45.455 1.12 0.00 39.21 4.52
215 216 1.686052 GACTTTGGTGAACAATGGGCA 59.314 47.619 1.12 0.00 39.21 5.36
216 217 1.335872 CGACTTTGGTGAACAATGGGC 60.336 52.381 1.12 0.00 39.21 5.36
217 218 1.953686 ACGACTTTGGTGAACAATGGG 59.046 47.619 1.12 0.00 39.21 4.00
218 219 2.616376 TGACGACTTTGGTGAACAATGG 59.384 45.455 1.12 0.00 39.21 3.16
219 220 3.559655 TCTGACGACTTTGGTGAACAATG 59.440 43.478 0.00 0.00 39.21 2.82
220 221 3.804036 TCTGACGACTTTGGTGAACAAT 58.196 40.909 0.00 0.00 39.21 2.71
221 222 3.118920 TCTCTGACGACTTTGGTGAACAA 60.119 43.478 0.00 0.00 37.28 2.83
222 223 2.429250 TCTCTGACGACTTTGGTGAACA 59.571 45.455 0.00 0.00 0.00 3.18
223 224 3.093717 TCTCTGACGACTTTGGTGAAC 57.906 47.619 0.00 0.00 0.00 3.18
224 225 3.554960 CCATCTCTGACGACTTTGGTGAA 60.555 47.826 0.00 0.00 0.00 3.18
225 226 2.029020 CCATCTCTGACGACTTTGGTGA 60.029 50.000 0.00 0.00 0.00 4.02
226 227 2.029020 TCCATCTCTGACGACTTTGGTG 60.029 50.000 0.00 0.00 0.00 4.17
227 228 2.248248 TCCATCTCTGACGACTTTGGT 58.752 47.619 0.00 0.00 0.00 3.67
228 229 3.319137 TTCCATCTCTGACGACTTTGG 57.681 47.619 0.00 0.00 0.00 3.28
229 230 3.868077 GGATTCCATCTCTGACGACTTTG 59.132 47.826 0.00 0.00 0.00 2.77
230 231 3.772025 AGGATTCCATCTCTGACGACTTT 59.228 43.478 5.29 0.00 0.00 2.66
231 232 3.370104 AGGATTCCATCTCTGACGACTT 58.630 45.455 5.29 0.00 0.00 3.01
232 233 2.955660 GAGGATTCCATCTCTGACGACT 59.044 50.000 5.29 0.00 0.00 4.18
233 234 2.955660 AGAGGATTCCATCTCTGACGAC 59.044 50.000 5.29 0.00 38.75 4.34
234 235 3.218453 GAGAGGATTCCATCTCTGACGA 58.782 50.000 17.84 0.00 40.12 4.20
235 236 2.954989 TGAGAGGATTCCATCTCTGACG 59.045 50.000 22.13 0.00 42.06 4.35
236 237 3.960102 AGTGAGAGGATTCCATCTCTGAC 59.040 47.826 22.13 14.04 42.06 3.51
237 238 4.262891 AGTGAGAGGATTCCATCTCTGA 57.737 45.455 22.13 5.12 42.06 3.27
238 239 4.650588 AGAAGTGAGAGGATTCCATCTCTG 59.349 45.833 22.13 0.00 42.06 3.35
239 240 4.882559 AGAAGTGAGAGGATTCCATCTCT 58.117 43.478 22.13 15.22 42.06 3.10
240 241 4.648762 TGAGAAGTGAGAGGATTCCATCTC 59.351 45.833 18.10 18.10 41.93 2.75
241 242 4.618635 TGAGAAGTGAGAGGATTCCATCT 58.381 43.478 5.29 5.03 0.00 2.90
242 243 5.549742 ATGAGAAGTGAGAGGATTCCATC 57.450 43.478 5.29 3.32 0.00 3.51
243 244 5.397672 CCAATGAGAAGTGAGAGGATTCCAT 60.398 44.000 5.29 0.00 0.00 3.41
244 245 4.080695 CCAATGAGAAGTGAGAGGATTCCA 60.081 45.833 5.29 0.00 0.00 3.53
245 246 4.163078 TCCAATGAGAAGTGAGAGGATTCC 59.837 45.833 0.00 0.00 0.00 3.01
246 247 5.115480 GTCCAATGAGAAGTGAGAGGATTC 58.885 45.833 0.00 0.00 0.00 2.52
247 248 4.533707 TGTCCAATGAGAAGTGAGAGGATT 59.466 41.667 0.00 0.00 0.00 3.01
248 249 4.099633 TGTCCAATGAGAAGTGAGAGGAT 58.900 43.478 0.00 0.00 0.00 3.24
249 250 3.510459 TGTCCAATGAGAAGTGAGAGGA 58.490 45.455 0.00 0.00 0.00 3.71
250 251 3.969287 TGTCCAATGAGAAGTGAGAGG 57.031 47.619 0.00 0.00 0.00 3.69
251 252 5.545588 TCTTTGTCCAATGAGAAGTGAGAG 58.454 41.667 0.00 0.00 0.00 3.20
252 253 5.305386 TCTCTTTGTCCAATGAGAAGTGAGA 59.695 40.000 18.10 7.77 43.87 3.27
253 254 5.407995 GTCTCTTTGTCCAATGAGAAGTGAG 59.592 44.000 20.63 7.47 46.35 3.51
254 255 5.300752 GTCTCTTTGTCCAATGAGAAGTGA 58.699 41.667 20.63 2.97 46.35 3.41
255 256 4.151335 CGTCTCTTTGTCCAATGAGAAGTG 59.849 45.833 20.63 13.08 46.35 3.16
256 257 4.310769 CGTCTCTTTGTCCAATGAGAAGT 58.689 43.478 20.63 0.00 46.35 3.01
257 258 3.681897 CCGTCTCTTTGTCCAATGAGAAG 59.318 47.826 20.63 20.94 46.35 2.85
258 259 3.664107 CCGTCTCTTTGTCCAATGAGAA 58.336 45.455 20.63 8.25 46.35 2.87
259 260 2.612972 GCCGTCTCTTTGTCCAATGAGA 60.613 50.000 17.03 17.03 44.30 3.27
260 261 1.734465 GCCGTCTCTTTGTCCAATGAG 59.266 52.381 13.80 13.80 41.34 2.90
261 262 1.610624 GGCCGTCTCTTTGTCCAATGA 60.611 52.381 0.00 0.00 0.00 2.57
262 263 0.804989 GGCCGTCTCTTTGTCCAATG 59.195 55.000 0.00 0.00 0.00 2.82
263 264 0.322546 GGGCCGTCTCTTTGTCCAAT 60.323 55.000 0.00 0.00 0.00 3.16
280 281 2.644555 AATTCCAGTCGATCGCGGGG 62.645 60.000 21.29 16.64 38.28 5.73
285 286 3.064079 TGGCAATTCCAGTCGATCG 57.936 52.632 9.36 9.36 40.72 3.69
294 295 1.133388 TCCTGGATGGATGGCAATTCC 60.133 52.381 0.00 0.00 40.56 3.01
314 315 5.802465 TCTCTTGCTCTTGACTCATCAAAT 58.198 37.500 0.00 0.00 44.28 2.32
315 316 5.219343 TCTCTTGCTCTTGACTCATCAAA 57.781 39.130 0.00 0.00 44.28 2.69
333 334 9.959721 TTGTAGCCTTTATCAAAGTTATTCTCT 57.040 29.630 0.00 0.00 36.77 3.10
374 375 4.089361 GTTCCCCCATGAAATATGGATCC 58.911 47.826 4.20 4.20 41.64 3.36
385 386 1.676968 CACGTGAGTTCCCCCATGA 59.323 57.895 10.90 0.00 46.40 3.07
406 407 0.615331 CTCCCAGCAGTGCTTTCCTA 59.385 55.000 16.89 0.00 36.40 2.94
432 433 0.608640 GTCGGGGAACACAGATCAGT 59.391 55.000 0.00 0.00 0.00 3.41
434 435 0.608130 CAGTCGGGGAACACAGATCA 59.392 55.000 0.00 0.00 0.00 2.92
444 445 5.704053 GTCTTTTAAAAAGATCAGTCGGGGA 59.296 40.000 1.66 0.00 0.00 4.81
448 449 7.190920 ACAGGTCTTTTAAAAAGATCAGTCG 57.809 36.000 0.00 0.00 29.93 4.18
450 451 7.201911 CCCAACAGGTCTTTTAAAAAGATCAGT 60.202 37.037 0.00 0.00 29.87 3.41
470 471 3.858868 GACAGCTCGCGACCCAACA 62.859 63.158 3.71 0.00 0.00 3.33
471 472 3.112709 GACAGCTCGCGACCCAAC 61.113 66.667 3.71 0.00 0.00 3.77
472 473 3.611674 TGACAGCTCGCGACCCAA 61.612 61.111 3.71 0.00 0.00 4.12
473 474 4.357947 GTGACAGCTCGCGACCCA 62.358 66.667 3.71 0.00 0.00 4.51
476 477 0.848942 CATATGTGACAGCTCGCGAC 59.151 55.000 3.71 2.10 0.00 5.19
477 478 0.738389 TCATATGTGACAGCTCGCGA 59.262 50.000 9.26 9.26 0.00 5.87
487 488 2.604614 CCGCTCGAATCGTCATATGTGA 60.605 50.000 1.52 2.84 0.00 3.58
493 494 2.279517 GGCCGCTCGAATCGTCAT 60.280 61.111 1.52 0.00 0.00 3.06
495 496 4.547905 TCGGCCGCTCGAATCGTC 62.548 66.667 23.51 0.00 36.12 4.20
496 497 4.124351 TTCGGCCGCTCGAATCGT 62.124 61.111 23.51 0.00 43.12 3.73
509 510 0.379669 ATAGTGTAGGCGTCGTTCGG 59.620 55.000 0.00 0.00 40.26 4.30
510 511 1.844357 CAATAGTGTAGGCGTCGTTCG 59.156 52.381 0.00 0.00 43.12 3.95
513 514 0.528924 TGCAATAGTGTAGGCGTCGT 59.471 50.000 0.00 0.00 0.00 4.34
522 523 5.563475 GCAACAAGACTCATTGCAATAGTGT 60.563 40.000 12.53 12.81 46.37 3.55
524 525 5.051891 GCAACAAGACTCATTGCAATAGT 57.948 39.130 12.53 15.05 46.37 2.12
566 568 7.865385 TGTTGTAAAGAAATCTGCAACAATACC 59.135 33.333 17.92 5.93 39.04 2.73
570 572 6.756074 CCTTGTTGTAAAGAAATCTGCAACAA 59.244 34.615 23.74 23.74 43.25 2.83
571 573 6.127479 ACCTTGTTGTAAAGAAATCTGCAACA 60.127 34.615 17.02 17.02 39.60 3.33
616 622 4.462508 TTTTGCACATGGTCTTTGTTGA 57.537 36.364 0.00 0.00 0.00 3.18
652 662 4.629634 CGCAACAGTTCCTACAACATGATA 59.370 41.667 0.00 0.00 0.00 2.15
662 672 2.047655 CCGCCGCAACAGTTCCTA 60.048 61.111 0.00 0.00 0.00 2.94
685 695 4.090057 GAGCTCAACCGCAACCGC 62.090 66.667 9.40 0.00 0.00 5.68
694 705 2.202676 CGCCTCCTCGAGCTCAAC 60.203 66.667 15.40 0.00 0.00 3.18
695 706 3.452786 CCGCCTCCTCGAGCTCAA 61.453 66.667 15.40 0.00 0.00 3.02
709 720 2.897350 GGTGTCTATGGCTGCCGC 60.897 66.667 14.98 2.33 0.00 6.53
710 721 2.586079 CGGTGTCTATGGCTGCCG 60.586 66.667 14.98 0.00 0.00 5.69
711 722 2.203070 CCGGTGTCTATGGCTGCC 60.203 66.667 12.87 12.87 0.00 4.85
712 723 1.815421 CACCGGTGTCTATGGCTGC 60.815 63.158 26.95 0.00 0.00 5.25
713 724 1.815421 GCACCGGTGTCTATGGCTG 60.815 63.158 33.92 6.73 0.00 4.85
714 725 1.961180 GAGCACCGGTGTCTATGGCT 61.961 60.000 33.92 23.42 0.00 4.75
715 726 1.521681 GAGCACCGGTGTCTATGGC 60.522 63.158 33.92 18.94 0.00 4.40
716 727 1.144057 GGAGCACCGGTGTCTATGG 59.856 63.158 33.92 9.05 0.00 2.74
717 728 0.537188 AAGGAGCACCGGTGTCTATG 59.463 55.000 33.92 9.92 41.83 2.23
718 729 1.276622 AAAGGAGCACCGGTGTCTAT 58.723 50.000 33.92 18.54 41.83 1.98
719 730 1.822990 CTAAAGGAGCACCGGTGTCTA 59.177 52.381 33.92 16.77 41.83 2.59
720 731 0.608640 CTAAAGGAGCACCGGTGTCT 59.391 55.000 33.92 29.15 41.83 3.41
721 732 0.391263 CCTAAAGGAGCACCGGTGTC 60.391 60.000 33.92 26.97 41.83 3.67
722 733 0.834687 TCCTAAAGGAGCACCGGTGT 60.835 55.000 33.92 21.33 39.78 4.16
723 734 0.391263 GTCCTAAAGGAGCACCGGTG 60.391 60.000 30.66 30.66 46.49 4.94
724 735 1.885163 CGTCCTAAAGGAGCACCGGT 61.885 60.000 0.00 0.00 46.49 5.28
725 736 1.153628 CGTCCTAAAGGAGCACCGG 60.154 63.158 0.00 0.00 46.49 5.28
726 737 1.153628 CCGTCCTAAAGGAGCACCG 60.154 63.158 0.00 0.00 46.49 4.94
727 738 1.449778 GCCGTCCTAAAGGAGCACC 60.450 63.158 0.00 0.00 46.49 5.01
728 739 1.810030 CGCCGTCCTAAAGGAGCAC 60.810 63.158 0.00 0.00 46.49 4.40
736 747 3.993584 ACGTTGCCGCCGTCCTAA 61.994 61.111 0.00 0.00 37.70 2.69
737 748 4.728102 CACGTTGCCGCCGTCCTA 62.728 66.667 0.00 0.00 36.17 2.94
745 756 2.701006 CGCTATTCCACGTTGCCG 59.299 61.111 0.00 0.00 40.83 5.69
749 760 1.743995 GTGCCCGCTATTCCACGTT 60.744 57.895 0.00 0.00 0.00 3.99
758 769 3.923864 CCATAGCCGTGCCCGCTA 61.924 66.667 0.00 0.00 0.00 4.26
792 803 4.100084 CTGCATCACCCCGCCTCA 62.100 66.667 0.00 0.00 0.00 3.86
837 848 2.586079 CCGGAGTGCTATGTGCCG 60.586 66.667 0.00 0.00 42.00 5.69
870 881 2.920912 TTTCGTCCACCGCCTCCT 60.921 61.111 0.00 0.00 36.19 3.69
950 1096 1.065709 GGTTTTAGGGTCGGCTCATCA 60.066 52.381 0.00 0.00 0.00 3.07
979 1125 3.460868 GGGATTTGGCCGGGCAAG 61.461 66.667 37.60 0.00 0.00 4.01
989 1135 4.418328 TGGGGACGGCGGGATTTG 62.418 66.667 13.24 0.00 0.00 2.32
990 1136 4.109675 CTGGGGACGGCGGGATTT 62.110 66.667 13.24 0.00 0.00 2.17
998 1144 0.179018 GATTTGGGATCTGGGGACGG 60.179 60.000 0.00 0.00 38.41 4.79
1254 1404 4.838486 GGCGCAGTCGACGGAGAG 62.838 72.222 22.09 13.14 38.10 3.20
1377 1527 2.159366 CGAAGTAGTCGCAGAACCTGAT 60.159 50.000 0.00 0.00 44.14 2.90
1465 1615 1.212935 CCATCTCCGGGTCTTGGAATT 59.787 52.381 0.00 0.00 34.44 2.17
1469 1619 2.190578 GCCATCTCCGGGTCTTGG 59.809 66.667 0.00 5.41 0.00 3.61
1477 1627 0.320247 GCTCAGTATGGCCATCTCCG 60.320 60.000 24.80 9.78 36.16 4.63
1544 1694 1.671379 GGTGAACTTGCCGAGGGTC 60.671 63.158 0.00 0.00 0.00 4.46
1572 1722 2.440796 CCCGGAGCGGTACAGGTA 60.441 66.667 0.73 0.00 46.80 3.08
1652 1802 2.652530 GTCGTCGGGCACACCTTA 59.347 61.111 0.00 0.00 36.97 2.69
1733 1883 1.450312 CCAGATGACCGTGCCCTTC 60.450 63.158 0.00 0.00 0.00 3.46
1746 1896 1.406065 CGCCAGAGATCCACCCAGAT 61.406 60.000 0.00 0.00 0.00 2.90
1747 1897 2.060383 CGCCAGAGATCCACCCAGA 61.060 63.158 0.00 0.00 0.00 3.86
1887 2046 0.596600 TTGCTCTGGTTGACGACGAC 60.597 55.000 0.00 0.00 0.00 4.34
1925 2084 2.890311 AGCTTGGTAGATCTCCATCTCG 59.110 50.000 12.78 5.77 40.18 4.04
1946 2105 0.536687 CCTCGGGAGTGAGCGGTATA 60.537 60.000 0.00 0.00 34.56 1.47
1948 2107 2.439701 CCTCGGGAGTGAGCGGTA 60.440 66.667 0.00 0.00 34.56 4.02
1973 2132 1.354506 GCTCAGCCATTCGTGATGC 59.645 57.895 0.00 0.00 34.25 3.91
2019 2178 2.073101 CCTTCCAGGGGCTAGGGAC 61.073 68.421 0.00 0.00 0.00 4.46
2143 2302 3.160870 CGCAGCTTCTTATAACGCATC 57.839 47.619 0.00 0.00 0.00 3.91
2203 2365 1.451387 GGTGGGGTAAGACATGCGG 60.451 63.158 0.00 0.00 0.00 5.69
2430 2592 1.881903 CGCCTCAGTCTGCTCAAGGA 61.882 60.000 9.06 0.00 30.09 3.36
2641 2803 2.194271 GCACGGTAGATCTTTTCTCGG 58.806 52.381 0.00 0.00 35.79 4.63
2642 2804 2.876091 TGCACGGTAGATCTTTTCTCG 58.124 47.619 0.00 1.09 35.79 4.04
2643 2805 4.184629 ACATGCACGGTAGATCTTTTCTC 58.815 43.478 0.00 0.00 35.79 2.87
2644 2806 4.207891 ACATGCACGGTAGATCTTTTCT 57.792 40.909 0.00 0.00 38.57 2.52
2645 2807 5.753438 TGATACATGCACGGTAGATCTTTTC 59.247 40.000 0.00 0.00 0.00 2.29
2646 2808 5.670485 TGATACATGCACGGTAGATCTTTT 58.330 37.500 0.00 0.00 0.00 2.27
2647 2809 5.276461 TGATACATGCACGGTAGATCTTT 57.724 39.130 0.00 0.00 0.00 2.52
2648 2810 4.797604 GCTGATACATGCACGGTAGATCTT 60.798 45.833 0.00 0.00 0.00 2.40
2649 2811 3.305676 GCTGATACATGCACGGTAGATCT 60.306 47.826 0.00 0.00 0.00 2.75
2650 2812 2.989840 GCTGATACATGCACGGTAGATC 59.010 50.000 6.28 2.34 0.00 2.75
2756 2925 1.871039 GCACAAGCGAAAAGGTGACTA 59.129 47.619 0.00 0.00 42.68 2.59
2771 2940 4.973168 AGAGAGGAAAGTTATGTGCACAA 58.027 39.130 25.72 10.60 0.00 3.33
2932 3102 2.159707 CGGCTCAAATACACTTTGACCG 60.160 50.000 18.15 18.15 41.54 4.79
3147 3385 0.593518 TCAACGTGCATGCAAAACCG 60.594 50.000 24.58 23.22 0.00 4.44
3255 3494 7.148407 CGAGCTAAAAACACAATCAGGTAATCT 60.148 37.037 0.00 0.00 0.00 2.40
3256 3495 6.961554 CGAGCTAAAAACACAATCAGGTAATC 59.038 38.462 0.00 0.00 0.00 1.75
3257 3496 6.430000 ACGAGCTAAAAACACAATCAGGTAAT 59.570 34.615 0.00 0.00 0.00 1.89
3312 3552 0.031716 TAGAGTGCAGGCTCATCCCT 60.032 55.000 7.05 0.00 37.94 4.20
3435 3676 6.385649 TGAAACTAGATGTCCAAAAACCAC 57.614 37.500 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.