Multiple sequence alignment - TraesCS6D01G252800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G252800 chr6D 100.000 4411 0 0 1 4411 357002655 357007065 0.000000e+00 8146.0
1 TraesCS6D01G252800 chr6D 95.161 124 6 0 2225 2348 357004752 357004875 3.480000e-46 196.0
2 TraesCS6D01G252800 chr6D 95.161 124 6 0 2098 2221 357004879 357005002 3.480000e-46 196.0
3 TraesCS6D01G252800 chr6B 94.421 3854 119 31 1 3809 538363603 538367405 0.000000e+00 5838.0
4 TraesCS6D01G252800 chr6B 84.345 313 20 16 3912 4209 538367417 538367715 3.360000e-71 279.0
5 TraesCS6D01G252800 chr6B 93.798 129 8 0 2220 2348 538365692 538365820 1.250000e-45 195.0
6 TraesCS6D01G252800 chr6B 92.126 127 9 1 2098 2223 538365824 538365950 1.260000e-40 178.0
7 TraesCS6D01G252800 chr6A 93.520 2361 102 21 1877 4206 499398876 499401216 0.000000e+00 3465.0
8 TraesCS6D01G252800 chr6A 90.924 1862 66 33 1 1801 499397056 499398875 0.000000e+00 2407.0
9 TraesCS6D01G252800 chr6A 87.967 241 11 9 1 223 499394011 499394251 7.270000e-68 268.0
10 TraesCS6D01G252800 chr6A 93.798 129 8 0 2220 2348 499399092 499399220 1.250000e-45 195.0
11 TraesCS6D01G252800 chr6A 91.473 129 6 1 2098 2221 499399224 499399352 5.870000e-39 172.0
12 TraesCS6D01G252800 chr3D 77.536 276 39 14 3157 3410 484823068 484823342 1.280000e-30 145.0
13 TraesCS6D01G252800 chr2D 85.385 130 12 7 3114 3240 644095594 644095719 1.290000e-25 128.0
14 TraesCS6D01G252800 chr2B 85.833 120 12 5 3123 3240 792990341 792990225 5.990000e-24 122.0
15 TraesCS6D01G252800 chr2A 83.594 128 18 3 3114 3240 769222993 769223118 2.790000e-22 117.0
16 TraesCS6D01G252800 chr1D 87.952 83 10 0 3157 3239 367429477 367429395 1.010000e-16 99.0
17 TraesCS6D01G252800 chr4D 88.462 78 9 0 3157 3234 89537784 89537707 1.310000e-15 95.3
18 TraesCS6D01G252800 chr4B 88.462 78 9 0 3157 3234 126597677 126597600 1.310000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G252800 chr6D 357002655 357007065 4410 False 2846.0 8146 96.7740 1 4411 3 chr6D.!!$F1 4410
1 TraesCS6D01G252800 chr6B 538363603 538367715 4112 False 1622.5 5838 91.1725 1 4209 4 chr6B.!!$F1 4208
2 TraesCS6D01G252800 chr6A 499394011 499401216 7205 False 1301.4 3465 91.5364 1 4206 5 chr6A.!!$F1 4205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 3204 0.178992 CAGCCCAACCTCAAGACCAA 60.179 55.0 0.0 0.0 0.00 3.67 F
1397 4511 0.828343 CAGGTATCTCCCGTCTCCCC 60.828 65.0 0.0 0.0 36.75 4.81 F
2538 5663 0.529378 CAGCTCTGCATGGGGAAAAC 59.471 55.0 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 4523 0.035152 AACAGATCATGGCGGCAGAA 60.035 50.0 19.29 8.28 0.00 3.02 R
2628 5753 0.251297 TGCCAACATAGGTGCTGCTT 60.251 50.0 0.00 0.00 0.00 3.91 R
4389 7550 0.035317 TCATCACTCCTGTGTGTGCC 59.965 55.0 0.00 0.00 44.14 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 78 3.492482 CCCAACACAAAGTGCCTTTTAGG 60.492 47.826 0.00 0.00 36.98 2.69
96 3146 2.558359 GGCTTTCACCATGTAACTTGCT 59.442 45.455 0.00 0.00 0.00 3.91
98 3148 3.253188 GCTTTCACCATGTAACTTGCTCA 59.747 43.478 0.00 0.00 0.00 4.26
110 3160 1.228245 TTGCTCAGCAACCACCTCC 60.228 57.895 8.40 0.00 43.99 4.30
112 3162 2.900106 GCTCAGCAACCACCTCCCT 61.900 63.158 0.00 0.00 0.00 4.20
115 3179 1.302832 CAGCAACCACCTCCCTCAC 60.303 63.158 0.00 0.00 0.00 3.51
119 3183 1.127567 CAACCACCTCCCTCACCAGA 61.128 60.000 0.00 0.00 0.00 3.86
120 3184 0.838122 AACCACCTCCCTCACCAGAG 60.838 60.000 0.00 0.00 41.72 3.35
123 3187 1.611851 ACCTCCCTCACCAGAGCAG 60.612 63.158 0.00 0.00 40.68 4.24
126 3190 4.106925 CCCTCACCAGAGCAGCCC 62.107 72.222 0.00 0.00 40.68 5.19
127 3191 3.324930 CCTCACCAGAGCAGCCCA 61.325 66.667 0.00 0.00 40.68 5.36
140 3204 0.178992 CAGCCCAACCTCAAGACCAA 60.179 55.000 0.00 0.00 0.00 3.67
423 3498 2.226330 GCAGCGGAGAGATAGAGAGAA 58.774 52.381 0.00 0.00 0.00 2.87
424 3499 2.226437 GCAGCGGAGAGATAGAGAGAAG 59.774 54.545 0.00 0.00 0.00 2.85
427 3502 2.484264 GCGGAGAGATAGAGAGAAGAGC 59.516 54.545 0.00 0.00 0.00 4.09
440 3521 1.734388 GAAGAGCGAGAGAGGGAGCC 61.734 65.000 0.00 0.00 0.00 4.70
455 3536 2.015227 GAGCCGAGGGAGAAGCTCTG 62.015 65.000 3.69 0.00 46.50 3.35
675 3770 1.586564 CGAGCGTGAATCCTCGGTC 60.587 63.158 13.78 13.78 46.70 4.79
793 3888 5.049828 CGCCAGAAAATTCCAGTTTCTTTT 58.950 37.500 0.00 0.00 41.47 2.27
796 3891 6.348498 CCAGAAAATTCCAGTTTCTTTTGGT 58.652 36.000 0.00 0.00 41.47 3.67
925 4022 0.899720 TTTGGAGTAGATTCGCCCGT 59.100 50.000 0.00 0.00 0.00 5.28
991 4092 4.030452 GCGACAGCAACTGCCCAC 62.030 66.667 0.00 0.00 44.35 4.61
1396 4510 1.465200 GCAGGTATCTCCCGTCTCCC 61.465 65.000 0.00 0.00 36.75 4.30
1397 4511 0.828343 CAGGTATCTCCCGTCTCCCC 60.828 65.000 0.00 0.00 36.75 4.81
1398 4512 1.902432 GGTATCTCCCGTCTCCCCG 60.902 68.421 0.00 0.00 0.00 5.73
1399 4513 2.203451 TATCTCCCGTCTCCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
1400 4514 3.064491 TATCTCCCGTCTCCCCGCA 62.064 63.158 0.00 0.00 0.00 5.69
1401 4515 2.367586 TATCTCCCGTCTCCCCGCAT 62.368 60.000 0.00 0.00 0.00 4.73
1402 4516 3.917760 CTCCCGTCTCCCCGCATC 61.918 72.222 0.00 0.00 0.00 3.91
1403 4517 4.770362 TCCCGTCTCCCCGCATCA 62.770 66.667 0.00 0.00 0.00 3.07
1404 4518 3.781307 CCCGTCTCCCCGCATCAA 61.781 66.667 0.00 0.00 0.00 2.57
1405 4519 2.505982 CCGTCTCCCCGCATCAAT 59.494 61.111 0.00 0.00 0.00 2.57
1406 4520 1.889105 CCGTCTCCCCGCATCAATG 60.889 63.158 0.00 0.00 0.00 2.82
1686 4804 7.657761 AGTCATACTTTTCCTTGTGAGTTAGTG 59.342 37.037 0.00 0.00 0.00 2.74
1689 4807 4.881850 ACTTTTCCTTGTGAGTTAGTGTGG 59.118 41.667 0.00 0.00 0.00 4.17
1694 4812 3.557898 CCTTGTGAGTTAGTGTGGCTGAT 60.558 47.826 0.00 0.00 0.00 2.90
1698 4816 4.082190 TGTGAGTTAGTGTGGCTGATCTAC 60.082 45.833 0.00 0.00 0.00 2.59
1987 5107 3.196469 TGATTGCTAGTCCTGAACTCCAG 59.804 47.826 0.00 0.00 39.55 3.86
2006 5126 3.452474 CAGATTGAGAAGGGAGCTAACG 58.548 50.000 0.00 0.00 0.00 3.18
2017 5137 2.344025 GGAGCTAACGGTAACTGGTTG 58.656 52.381 0.00 0.00 0.00 3.77
2028 5148 5.998981 ACGGTAACTGGTTGACATTATTTCA 59.001 36.000 0.00 0.00 0.00 2.69
2070 5190 7.983166 AGTGAGGGTATACCATAGTAAAACA 57.017 36.000 23.33 6.04 43.89 2.83
2071 5191 8.383374 AGTGAGGGTATACCATAGTAAAACAA 57.617 34.615 23.33 0.00 43.89 2.83
2081 5201 5.243060 ACCATAGTAAAACAACTTCCTTGCC 59.757 40.000 0.00 0.00 32.41 4.52
2096 5216 0.964700 TTGCCGCATCAAATTGGACA 59.035 45.000 0.00 0.00 0.00 4.02
2099 5219 1.563111 CCGCATCAAATTGGACATGC 58.437 50.000 7.74 7.74 38.64 4.06
2279 5404 1.264288 GAAGCTGAACTCAACCGTTGG 59.736 52.381 11.35 5.02 0.00 3.77
2305 5430 5.061684 GCGGTGCATTAATTTTTACCAGAAC 59.938 40.000 0.00 0.00 0.00 3.01
2318 5443 9.905713 ATTTTTACCAGAACAAGCTAGATATCA 57.094 29.630 5.32 0.00 0.00 2.15
2465 5590 8.153550 AGAGATTTAGACAGACACACAAATCTT 58.846 33.333 8.33 0.00 40.79 2.40
2538 5663 0.529378 CAGCTCTGCATGGGGAAAAC 59.471 55.000 0.00 0.00 0.00 2.43
2628 5753 9.110502 CTCATCTCTGATGATTTTTCTCATTCA 57.889 33.333 10.20 0.00 36.01 2.57
2909 6034 2.959357 GCTCACTGTCCTGCGCAAC 61.959 63.158 13.05 8.67 0.00 4.17
2963 6088 0.378257 CAATACCAGCCGTGTGCATC 59.622 55.000 0.00 0.00 44.83 3.91
2969 6094 2.821366 GCCGTGTGCATCCAGGAG 60.821 66.667 0.00 0.00 40.77 3.69
3030 6155 1.219522 CGACGAACAAGTGTCCACCC 61.220 60.000 0.00 0.00 0.00 4.61
3073 6198 6.405278 AAAGGAACCAAACATCGAATTCTT 57.595 33.333 3.52 0.00 0.00 2.52
3113 6238 2.228103 TGATTTATCCGGACCGATCTCG 59.772 50.000 17.49 0.00 39.44 4.04
3255 6380 2.284699 CCTCGGTTGACCCCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
3552 6681 1.098050 GCTTTGCCGGATCAAGATGT 58.902 50.000 5.05 0.00 0.00 3.06
3581 6710 1.507140 ATCCCCGTATCTTGGCAGAA 58.493 50.000 0.00 0.00 30.76 3.02
3696 6829 1.358877 TGGACATTGTTCATCTCGCG 58.641 50.000 0.00 0.00 0.00 5.87
3717 6850 3.616379 CGTGCTCTCCTCTGAAATTCTTC 59.384 47.826 0.00 0.00 0.00 2.87
3769 6905 2.892215 TGATGGCTGTCAGCATTTTCAA 59.108 40.909 25.68 2.27 44.75 2.69
3770 6906 3.512329 TGATGGCTGTCAGCATTTTCAAT 59.488 39.130 25.68 7.54 44.75 2.57
3771 6907 3.306917 TGGCTGTCAGCATTTTCAATG 57.693 42.857 25.68 0.00 44.75 2.82
3772 6908 1.997606 GGCTGTCAGCATTTTCAATGC 59.002 47.619 25.68 12.64 44.75 3.56
3773 6909 1.997606 GCTGTCAGCATTTTCAATGCC 59.002 47.619 20.16 4.07 45.59 4.40
3774 6910 2.610976 GCTGTCAGCATTTTCAATGCCA 60.611 45.455 20.16 7.91 45.59 4.92
3824 6963 1.272147 GGGAGGGTTTGTGCTGAATCT 60.272 52.381 0.00 0.00 0.00 2.40
3827 6966 2.887152 GAGGGTTTGTGCTGAATCTGTT 59.113 45.455 0.00 0.00 0.00 3.16
3831 6970 4.441356 GGGTTTGTGCTGAATCTGTTTGAA 60.441 41.667 0.00 0.00 0.00 2.69
3834 6973 6.258507 GGTTTGTGCTGAATCTGTTTGAAATT 59.741 34.615 0.00 0.00 0.00 1.82
3861 7000 5.493133 TGCAAAACGTTGTAGTCAGAAAT 57.507 34.783 0.00 0.00 37.06 2.17
3880 7019 9.300681 TCAGAAATGTATGAAGACCTGAAAATT 57.699 29.630 0.00 0.00 0.00 1.82
3883 7022 9.346725 GAAATGTATGAAGACCTGAAAATTGAC 57.653 33.333 0.00 0.00 0.00 3.18
3884 7023 8.408043 AATGTATGAAGACCTGAAAATTGACA 57.592 30.769 0.00 0.00 0.00 3.58
4025 7169 1.698532 CTGCCCATAATCTCAGCCTCT 59.301 52.381 0.00 0.00 0.00 3.69
4074 7220 6.651225 GTCCCATGCCTAGTTTGATTATAGTC 59.349 42.308 0.00 0.00 0.00 2.59
4124 7271 5.950023 AGTTCCCAGATATTCCGACTAGTA 58.050 41.667 0.00 0.00 0.00 1.82
4141 7297 8.655092 CCGACTAGTAGTTTATATCTACTTCCG 58.345 40.741 17.40 16.52 43.48 4.30
4152 7312 0.608640 CTACTTCCGTGGACCTTGCT 59.391 55.000 0.00 0.00 0.00 3.91
4163 7323 3.445096 GTGGACCTTGCTTGCATATCTTT 59.555 43.478 0.00 0.00 0.00 2.52
4164 7324 3.444742 TGGACCTTGCTTGCATATCTTTG 59.555 43.478 0.00 0.00 0.00 2.77
4165 7325 3.696051 GGACCTTGCTTGCATATCTTTGA 59.304 43.478 0.00 0.00 0.00 2.69
4166 7326 4.340381 GGACCTTGCTTGCATATCTTTGAT 59.660 41.667 0.00 0.00 0.00 2.57
4167 7327 5.258456 ACCTTGCTTGCATATCTTTGATG 57.742 39.130 0.00 0.00 0.00 3.07
4168 7328 4.951715 ACCTTGCTTGCATATCTTTGATGA 59.048 37.500 0.00 0.00 0.00 2.92
4169 7329 5.597182 ACCTTGCTTGCATATCTTTGATGAT 59.403 36.000 0.00 0.00 0.00 2.45
4170 7330 6.150318 CCTTGCTTGCATATCTTTGATGATC 58.850 40.000 0.00 0.00 0.00 2.92
4171 7331 6.016192 CCTTGCTTGCATATCTTTGATGATCT 60.016 38.462 0.00 0.00 0.00 2.75
4173 7333 5.472478 TGCTTGCATATCTTTGATGATCTCC 59.528 40.000 0.00 0.00 0.00 3.71
4174 7334 5.390673 GCTTGCATATCTTTGATGATCTCCG 60.391 44.000 0.00 0.00 0.00 4.63
4175 7335 3.999001 TGCATATCTTTGATGATCTCCGC 59.001 43.478 0.00 0.00 0.00 5.54
4209 7370 8.972349 GCCAGAGAAGAATGTTTTTCTTTTTAG 58.028 33.333 2.43 0.00 38.73 1.85
4224 7385 9.915629 TTTTCTTTTTAGTTTTGCTAAGTCACA 57.084 25.926 0.00 0.00 40.41 3.58
4225 7386 9.567848 TTTCTTTTTAGTTTTGCTAAGTCACAG 57.432 29.630 0.00 0.00 40.41 3.66
4226 7387 8.276252 TCTTTTTAGTTTTGCTAAGTCACAGT 57.724 30.769 0.00 0.00 40.41 3.55
4227 7388 8.736244 TCTTTTTAGTTTTGCTAAGTCACAGTT 58.264 29.630 0.00 0.00 40.41 3.16
4228 7389 8.682128 TTTTTAGTTTTGCTAAGTCACAGTTG 57.318 30.769 0.00 0.00 40.41 3.16
4229 7390 7.618502 TTTAGTTTTGCTAAGTCACAGTTGA 57.381 32.000 0.00 0.00 40.41 3.18
4230 7391 7.801716 TTAGTTTTGCTAAGTCACAGTTGAT 57.198 32.000 0.00 0.00 34.95 2.57
4231 7392 6.064846 AGTTTTGCTAAGTCACAGTTGATG 57.935 37.500 0.00 0.00 33.11 3.07
4232 7393 4.488126 TTTGCTAAGTCACAGTTGATGC 57.512 40.909 0.00 0.00 33.11 3.91
4233 7394 3.407424 TGCTAAGTCACAGTTGATGCT 57.593 42.857 0.00 0.00 33.11 3.79
4234 7395 4.535526 TGCTAAGTCACAGTTGATGCTA 57.464 40.909 0.00 0.00 33.11 3.49
4235 7396 5.089970 TGCTAAGTCACAGTTGATGCTAT 57.910 39.130 0.00 0.00 33.11 2.97
4236 7397 6.220726 TGCTAAGTCACAGTTGATGCTATA 57.779 37.500 0.00 0.00 33.11 1.31
4237 7398 6.820335 TGCTAAGTCACAGTTGATGCTATAT 58.180 36.000 0.00 0.00 33.11 0.86
4238 7399 6.925718 TGCTAAGTCACAGTTGATGCTATATC 59.074 38.462 0.00 0.00 33.11 1.63
4239 7400 6.925718 GCTAAGTCACAGTTGATGCTATATCA 59.074 38.462 0.00 0.00 33.11 2.15
4240 7401 7.601886 GCTAAGTCACAGTTGATGCTATATCAT 59.398 37.037 0.00 0.00 33.11 2.45
4241 7402 9.486497 CTAAGTCACAGTTGATGCTATATCATT 57.514 33.333 0.00 0.00 33.11 2.57
4242 7403 8.743085 AAGTCACAGTTGATGCTATATCATTT 57.257 30.769 0.00 0.00 33.11 2.32
4243 7404 8.151141 AGTCACAGTTGATGCTATATCATTTG 57.849 34.615 0.00 0.00 33.11 2.32
4244 7405 7.989170 AGTCACAGTTGATGCTATATCATTTGA 59.011 33.333 0.00 0.00 33.11 2.69
4245 7406 8.781196 GTCACAGTTGATGCTATATCATTTGAT 58.219 33.333 0.00 0.00 34.81 2.57
4246 7407 9.346005 TCACAGTTGATGCTATATCATTTGATT 57.654 29.630 0.00 0.00 36.05 2.57
4247 7408 9.961265 CACAGTTGATGCTATATCATTTGATTT 57.039 29.630 0.00 0.00 36.05 2.17
4250 7411 9.472361 AGTTGATGCTATATCATTTGATTTTGC 57.528 29.630 9.29 9.29 35.87 3.68
4251 7412 9.251792 GTTGATGCTATATCATTTGATTTTGCA 57.748 29.630 17.03 17.03 43.36 4.08
4253 7414 9.418045 TGATGCTATATCATTTGATTTTGCATG 57.582 29.630 24.96 0.00 45.88 4.06
4254 7415 8.771920 ATGCTATATCATTTGATTTTGCATGG 57.228 30.769 21.82 5.97 45.06 3.66
4255 7416 7.953752 TGCTATATCATTTGATTTTGCATGGA 58.046 30.769 13.02 0.00 38.45 3.41
4256 7417 8.085909 TGCTATATCATTTGATTTTGCATGGAG 58.914 33.333 13.02 0.00 38.45 3.86
4257 7418 8.301720 GCTATATCATTTGATTTTGCATGGAGA 58.698 33.333 10.66 0.00 35.59 3.71
4261 7422 7.603963 TCATTTGATTTTGCATGGAGATTTG 57.396 32.000 0.00 0.00 0.00 2.32
4262 7423 7.162761 TCATTTGATTTTGCATGGAGATTTGT 58.837 30.769 0.00 0.00 0.00 2.83
4263 7424 8.312564 TCATTTGATTTTGCATGGAGATTTGTA 58.687 29.630 0.00 0.00 0.00 2.41
4264 7425 7.887996 TTTGATTTTGCATGGAGATTTGTAC 57.112 32.000 0.00 0.00 0.00 2.90
4265 7426 6.587206 TGATTTTGCATGGAGATTTGTACA 57.413 33.333 0.00 0.00 0.00 2.90
4266 7427 6.389091 TGATTTTGCATGGAGATTTGTACAC 58.611 36.000 0.00 0.00 0.00 2.90
4267 7428 5.781210 TTTTGCATGGAGATTTGTACACA 57.219 34.783 0.00 0.00 0.00 3.72
4268 7429 5.981088 TTTGCATGGAGATTTGTACACAT 57.019 34.783 0.00 0.00 0.00 3.21
4269 7430 5.981088 TTGCATGGAGATTTGTACACATT 57.019 34.783 0.00 0.00 0.00 2.71
4270 7431 5.981088 TGCATGGAGATTTGTACACATTT 57.019 34.783 0.00 0.00 0.00 2.32
4271 7432 6.343716 TGCATGGAGATTTGTACACATTTT 57.656 33.333 0.00 0.00 0.00 1.82
4272 7433 6.757237 TGCATGGAGATTTGTACACATTTTT 58.243 32.000 0.00 0.00 0.00 1.94
4321 7482 7.809546 TCTTATCTACTATGTCACCTGACTG 57.190 40.000 6.97 0.82 44.99 3.51
4322 7483 7.574607 TCTTATCTACTATGTCACCTGACTGA 58.425 38.462 6.97 0.00 44.99 3.41
4323 7484 7.717436 TCTTATCTACTATGTCACCTGACTGAG 59.283 40.741 6.97 6.37 44.99 3.35
4324 7485 5.437191 TCTACTATGTCACCTGACTGAGA 57.563 43.478 6.97 0.71 44.99 3.27
4325 7486 5.186942 TCTACTATGTCACCTGACTGAGAC 58.813 45.833 6.97 0.00 44.99 3.36
4326 7487 4.040936 ACTATGTCACCTGACTGAGACT 57.959 45.455 6.97 0.00 44.99 3.24
4327 7488 4.411927 ACTATGTCACCTGACTGAGACTT 58.588 43.478 6.97 0.00 44.99 3.01
4328 7489 5.571285 ACTATGTCACCTGACTGAGACTTA 58.429 41.667 6.97 0.00 44.99 2.24
4329 7490 5.650266 ACTATGTCACCTGACTGAGACTTAG 59.350 44.000 6.97 16.54 44.99 2.18
4330 7491 3.833732 TGTCACCTGACTGAGACTTAGT 58.166 45.455 0.00 0.00 44.99 2.24
4331 7492 4.215908 TGTCACCTGACTGAGACTTAGTT 58.784 43.478 0.86 0.00 44.99 2.24
4332 7493 5.382616 TGTCACCTGACTGAGACTTAGTTA 58.617 41.667 0.86 0.00 44.99 2.24
4333 7494 5.831525 TGTCACCTGACTGAGACTTAGTTAA 59.168 40.000 0.86 0.00 44.99 2.01
4334 7495 6.322969 TGTCACCTGACTGAGACTTAGTTAAA 59.677 38.462 0.86 0.00 44.99 1.52
4335 7496 7.015292 TGTCACCTGACTGAGACTTAGTTAAAT 59.985 37.037 0.86 0.00 44.99 1.40
4336 7497 7.542824 GTCACCTGACTGAGACTTAGTTAAATC 59.457 40.741 0.86 0.00 41.65 2.17
4337 7498 7.451877 TCACCTGACTGAGACTTAGTTAAATCT 59.548 37.037 0.86 0.00 0.00 2.40
4338 7499 8.091449 CACCTGACTGAGACTTAGTTAAATCTT 58.909 37.037 0.86 0.00 0.00 2.40
4339 7500 9.310449 ACCTGACTGAGACTTAGTTAAATCTTA 57.690 33.333 0.86 0.00 0.00 2.10
4356 7517 6.705863 AATCTTAATTGATTGAGACCTGGC 57.294 37.500 0.00 0.00 35.60 4.85
4357 7518 4.526970 TCTTAATTGATTGAGACCTGGCC 58.473 43.478 0.00 0.00 28.86 5.36
4358 7519 2.905415 AATTGATTGAGACCTGGCCA 57.095 45.000 4.71 4.71 0.00 5.36
4359 7520 2.134789 ATTGATTGAGACCTGGCCAC 57.865 50.000 0.00 0.00 0.00 5.01
4360 7521 0.770499 TTGATTGAGACCTGGCCACA 59.230 50.000 0.00 0.00 0.00 4.17
4361 7522 0.036732 TGATTGAGACCTGGCCACAC 59.963 55.000 0.00 0.00 0.00 3.82
4362 7523 0.678048 GATTGAGACCTGGCCACACC 60.678 60.000 0.00 0.00 39.84 4.16
4363 7524 2.142292 ATTGAGACCTGGCCACACCC 62.142 60.000 0.00 0.00 37.83 4.61
4364 7525 2.930562 GAGACCTGGCCACACCCT 60.931 66.667 0.00 0.00 37.83 4.34
4365 7526 3.252284 AGACCTGGCCACACCCTG 61.252 66.667 0.00 0.00 37.83 4.45
4366 7527 3.570212 GACCTGGCCACACCCTGT 61.570 66.667 0.00 0.00 37.83 4.00
4367 7528 3.103213 ACCTGGCCACACCCTGTT 61.103 61.111 0.00 0.00 37.83 3.16
4368 7529 2.198426 CCTGGCCACACCCTGTTT 59.802 61.111 0.00 0.00 37.83 2.83
4369 7530 1.457455 CCTGGCCACACCCTGTTTT 60.457 57.895 0.00 0.00 37.83 2.43
4370 7531 1.048160 CCTGGCCACACCCTGTTTTT 61.048 55.000 0.00 0.00 37.83 1.94
4399 7560 2.497107 CCTTTTGAAGGCACACACAG 57.503 50.000 0.00 0.00 42.78 3.66
4400 7561 1.067516 CCTTTTGAAGGCACACACAGG 59.932 52.381 0.00 0.00 42.78 4.00
4401 7562 2.023673 CTTTTGAAGGCACACACAGGA 58.976 47.619 0.00 0.00 0.00 3.86
4402 7563 1.679139 TTTGAAGGCACACACAGGAG 58.321 50.000 0.00 0.00 0.00 3.69
4403 7564 0.546122 TTGAAGGCACACACAGGAGT 59.454 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.367292 GCAATGAACGGTTGATGGAATGT 60.367 43.478 0.00 0.00 0.00 2.71
74 78 2.352715 GCAAGTTACATGGTGAAAGCCC 60.353 50.000 0.00 0.00 0.00 5.19
96 3146 1.461268 TGAGGGAGGTGGTTGCTGA 60.461 57.895 0.00 0.00 0.00 4.26
98 3148 2.529744 GGTGAGGGAGGTGGTTGCT 61.530 63.158 0.00 0.00 0.00 3.91
110 3160 2.898933 TTGGGCTGCTCTGGTGAGG 61.899 63.158 0.00 0.00 40.53 3.86
112 3162 2.431683 GTTGGGCTGCTCTGGTGA 59.568 61.111 0.00 0.00 0.00 4.02
115 3179 2.045536 GAGGTTGGGCTGCTCTGG 60.046 66.667 0.00 0.00 0.00 3.86
119 3183 1.073897 GTCTTGAGGTTGGGCTGCT 59.926 57.895 0.00 0.00 0.00 4.24
120 3184 1.973812 GGTCTTGAGGTTGGGCTGC 60.974 63.158 0.00 0.00 0.00 5.25
123 3187 0.961753 CTTTGGTCTTGAGGTTGGGC 59.038 55.000 0.00 0.00 0.00 5.36
126 3190 1.002468 CACGCTTTGGTCTTGAGGTTG 60.002 52.381 0.00 0.00 0.00 3.77
127 3191 1.134220 TCACGCTTTGGTCTTGAGGTT 60.134 47.619 0.00 0.00 0.00 3.50
423 3498 2.123897 GGCTCCCTCTCTCGCTCT 60.124 66.667 0.00 0.00 0.00 4.09
424 3499 3.591835 CGGCTCCCTCTCTCGCTC 61.592 72.222 0.00 0.00 0.00 5.03
427 3502 2.904866 CCTCGGCTCCCTCTCTCG 60.905 72.222 0.00 0.00 0.00 4.04
440 3521 2.103934 CGCAGAGCTTCTCCCTCG 59.896 66.667 0.00 0.00 34.56 4.63
455 3536 2.101582 TCTAAGCTCTGGATTTCTCCGC 59.898 50.000 0.00 0.00 45.37 5.54
675 3770 4.148825 CAACGAGGCCCCGGAGAG 62.149 72.222 12.68 0.00 0.00 3.20
683 3778 2.180017 CAATGCAGCAACGAGGCC 59.820 61.111 0.00 0.00 0.00 5.19
793 3888 2.345991 CGGCTCCGGAGAAAACCA 59.654 61.111 35.69 0.00 35.56 3.67
796 3891 3.998672 ACGCGGCTCCGGAGAAAA 61.999 61.111 35.69 0.00 40.19 2.29
991 4092 4.443394 GCTCTTCAAAGACATTGCAACTTG 59.557 41.667 0.00 0.00 38.98 3.16
1406 4520 2.517875 ATCATGGCGGCAGAAGGC 60.518 61.111 19.29 0.00 43.74 4.35
1407 4521 1.147824 AGATCATGGCGGCAGAAGG 59.852 57.895 19.29 7.10 0.00 3.46
1408 4522 0.463295 ACAGATCATGGCGGCAGAAG 60.463 55.000 19.29 10.16 0.00 2.85
1409 4523 0.035152 AACAGATCATGGCGGCAGAA 60.035 50.000 19.29 8.28 0.00 3.02
1410 4524 0.035152 AAACAGATCATGGCGGCAGA 60.035 50.000 19.29 15.09 0.00 4.26
1411 4525 0.099968 CAAACAGATCATGGCGGCAG 59.900 55.000 19.29 9.89 0.00 4.85
1412 4526 1.936436 GCAAACAGATCATGGCGGCA 61.936 55.000 16.34 16.34 0.00 5.69
1413 4527 1.226773 GCAAACAGATCATGGCGGC 60.227 57.895 0.00 0.00 0.00 6.53
1414 4528 0.379669 GAGCAAACAGATCATGGCGG 59.620 55.000 0.00 0.00 31.47 6.13
1415 4529 1.089112 TGAGCAAACAGATCATGGCG 58.911 50.000 0.00 0.00 37.82 5.69
1494 4608 2.186826 ACAAAGCACTGCACCGGAC 61.187 57.895 9.46 0.00 0.00 4.79
1653 4771 7.773224 TCACAAGGAAAAGTATGACTGAAGAAA 59.227 33.333 0.00 0.00 0.00 2.52
1654 4772 7.279615 TCACAAGGAAAAGTATGACTGAAGAA 58.720 34.615 0.00 0.00 0.00 2.52
1655 4773 6.826668 TCACAAGGAAAAGTATGACTGAAGA 58.173 36.000 0.00 0.00 0.00 2.87
1686 4804 1.432270 GCCTTGCGTAGATCAGCCAC 61.432 60.000 0.00 0.00 0.00 5.01
1710 4828 7.952101 CCACTAAATAGAATAAATCGTGCATCG 59.048 37.037 0.00 0.00 41.41 3.84
1746 4865 2.523841 TCCCATTAGGCATTAGGGGA 57.476 50.000 5.59 5.59 42.12 4.81
1748 4867 3.091633 CCATCCCATTAGGCATTAGGG 57.908 52.381 0.00 0.00 40.98 3.53
1826 4946 2.292569 CCATGAGTGCACAGGAATATGC 59.707 50.000 21.04 0.00 0.00 3.14
1987 5107 2.168728 ACCGTTAGCTCCCTTCTCAATC 59.831 50.000 0.00 0.00 0.00 2.67
2006 5126 8.138712 TGTTTGAAATAATGTCAACCAGTTACC 58.861 33.333 0.00 0.00 34.78 2.85
2070 5190 1.327303 TTTGATGCGGCAAGGAAGTT 58.673 45.000 6.82 0.00 0.00 2.66
2071 5191 1.549203 ATTTGATGCGGCAAGGAAGT 58.451 45.000 6.82 0.00 0.00 3.01
2096 5216 3.459232 TGCTAAGAATGAGTAGCGCAT 57.541 42.857 11.47 0.00 0.00 4.73
2099 5219 4.177026 ACACTTGCTAAGAATGAGTAGCG 58.823 43.478 3.37 0.00 0.00 4.26
2279 5404 4.238514 TGGTAAAAATTAATGCACCGCAC 58.761 39.130 0.00 0.00 43.04 5.34
2305 5430 4.689812 GGACTGCACATGATATCTAGCTTG 59.310 45.833 0.00 0.00 0.00 4.01
2465 5590 4.590647 TGTTGGGCATATTTGAACTTTGGA 59.409 37.500 0.00 0.00 0.00 3.53
2538 5663 1.270777 CCGCAAGCAAAAGCTTGTCG 61.271 55.000 25.42 25.36 46.16 4.35
2628 5753 0.251297 TGCCAACATAGGTGCTGCTT 60.251 50.000 0.00 0.00 0.00 3.91
2909 6034 0.462759 GCATTCTCCTTGGTCCTCGG 60.463 60.000 0.00 0.00 0.00 4.63
2975 6100 1.929088 AGTAGGGGTTGGGGCCTTC 60.929 63.158 0.84 0.00 0.00 3.46
2984 6109 1.571773 GGACCATGCCAGTAGGGGTT 61.572 60.000 0.00 0.00 37.04 4.11
3030 6155 7.556844 TCCTTTCCTTTGCTACTAGTTGATAG 58.443 38.462 8.60 0.00 37.53 2.08
3073 6198 2.253758 GCGCTGAGGCTTGTTGACA 61.254 57.895 0.00 0.00 36.09 3.58
3269 6394 1.600636 CACCTTTTCCTGCTCCGCA 60.601 57.895 0.00 0.00 36.92 5.69
3552 6681 3.181329 AGATACGGGGATATCATTGCCA 58.819 45.455 4.83 0.00 34.50 4.92
3696 6829 4.573900 TGAAGAATTTCAGAGGAGAGCAC 58.426 43.478 0.00 0.00 38.37 4.40
3769 6905 1.349688 TCCTAGAAAACGTGGTGGCAT 59.650 47.619 0.00 0.00 0.00 4.40
3770 6906 0.759959 TCCTAGAAAACGTGGTGGCA 59.240 50.000 0.00 0.00 0.00 4.92
3771 6907 2.007608 GATCCTAGAAAACGTGGTGGC 58.992 52.381 0.00 0.00 0.00 5.01
3772 6908 3.262420 CAGATCCTAGAAAACGTGGTGG 58.738 50.000 0.00 0.00 0.00 4.61
3773 6909 3.679980 CACAGATCCTAGAAAACGTGGTG 59.320 47.826 0.00 0.00 0.00 4.17
3774 6910 3.323979 ACACAGATCCTAGAAAACGTGGT 59.676 43.478 0.00 0.00 0.00 4.16
3824 6963 7.352719 ACGTTTTGCAGTAAAATTTCAAACA 57.647 28.000 0.00 0.00 40.17 2.83
3827 6966 7.352719 ACAACGTTTTGCAGTAAAATTTCAA 57.647 28.000 0.00 0.00 40.17 2.69
3831 6970 7.251994 TGACTACAACGTTTTGCAGTAAAATT 58.748 30.769 0.00 0.00 39.13 1.82
3834 6973 5.581479 TCTGACTACAACGTTTTGCAGTAAA 59.419 36.000 0.00 0.00 39.13 2.01
3861 7000 6.073276 CGTGTCAATTTTCAGGTCTTCATACA 60.073 38.462 0.00 0.00 0.00 2.29
3880 7019 0.179234 TGCCCTTGAAGAACGTGTCA 59.821 50.000 0.00 0.00 0.00 3.58
3883 7022 2.861462 TTTTGCCCTTGAAGAACGTG 57.139 45.000 0.00 0.00 0.00 4.49
3884 7023 7.257722 CAATATATTTTGCCCTTGAAGAACGT 58.742 34.615 0.00 0.00 0.00 3.99
3992 7136 2.254152 TGGGCAGTACTTCCTCTGAT 57.746 50.000 11.53 0.00 34.02 2.90
4058 7204 9.853177 AATTTCTGGGGACTATAATCAAACTAG 57.147 33.333 0.00 0.00 0.00 2.57
4100 7247 5.950023 ACTAGTCGGAATATCTGGGAACTA 58.050 41.667 0.00 0.00 0.00 2.24
4141 7297 2.648059 AGATATGCAAGCAAGGTCCAC 58.352 47.619 0.00 0.00 0.00 4.02
4152 7312 4.453478 GCGGAGATCATCAAAGATATGCAA 59.547 41.667 0.00 0.00 29.41 4.08
4163 7323 1.117749 CCTCAGGGCGGAGATCATCA 61.118 60.000 6.40 0.00 37.05 3.07
4164 7324 1.670590 CCTCAGGGCGGAGATCATC 59.329 63.158 6.40 0.00 37.05 2.92
4165 7325 1.840650 CCCTCAGGGCGGAGATCAT 60.841 63.158 0.00 0.00 35.35 2.45
4166 7326 2.444706 CCCTCAGGGCGGAGATCA 60.445 66.667 0.00 0.00 35.35 2.92
4209 7370 4.676924 GCATCAACTGTGACTTAGCAAAAC 59.323 41.667 0.00 0.00 36.31 2.43
4210 7371 4.580167 AGCATCAACTGTGACTTAGCAAAA 59.420 37.500 0.00 0.00 36.31 2.44
4211 7372 4.136796 AGCATCAACTGTGACTTAGCAAA 58.863 39.130 0.00 0.00 36.31 3.68
4212 7373 3.743521 AGCATCAACTGTGACTTAGCAA 58.256 40.909 0.00 0.00 36.31 3.91
4213 7374 3.407424 AGCATCAACTGTGACTTAGCA 57.593 42.857 0.00 0.00 36.31 3.49
4214 7375 6.925718 TGATATAGCATCAACTGTGACTTAGC 59.074 38.462 0.00 0.00 36.31 3.09
4215 7376 9.486497 AATGATATAGCATCAACTGTGACTTAG 57.514 33.333 3.52 0.00 36.31 2.18
4216 7377 9.836864 AAATGATATAGCATCAACTGTGACTTA 57.163 29.630 3.52 0.00 36.31 2.24
4217 7378 8.618677 CAAATGATATAGCATCAACTGTGACTT 58.381 33.333 3.52 0.00 36.31 3.01
4218 7379 7.989170 TCAAATGATATAGCATCAACTGTGACT 59.011 33.333 3.52 0.00 36.31 3.41
4219 7380 8.146479 TCAAATGATATAGCATCAACTGTGAC 57.854 34.615 3.52 0.00 36.31 3.67
4220 7381 8.913487 ATCAAATGATATAGCATCAACTGTGA 57.087 30.769 3.52 2.68 33.52 3.58
4221 7382 9.961265 AAATCAAATGATATAGCATCAACTGTG 57.039 29.630 3.52 0.00 33.73 3.66
4224 7385 9.472361 GCAAAATCAAATGATATAGCATCAACT 57.528 29.630 3.52 0.00 33.73 3.16
4225 7386 9.251792 TGCAAAATCAAATGATATAGCATCAAC 57.748 29.630 3.52 0.00 33.03 3.18
4226 7387 9.990360 ATGCAAAATCAAATGATATAGCATCAA 57.010 25.926 16.77 0.00 39.07 2.57
4227 7388 9.418045 CATGCAAAATCAAATGATATAGCATCA 57.582 29.630 18.41 0.00 40.17 3.07
4228 7389 8.869897 CCATGCAAAATCAAATGATATAGCATC 58.130 33.333 18.41 0.00 40.17 3.91
4229 7390 8.590204 TCCATGCAAAATCAAATGATATAGCAT 58.410 29.630 16.77 16.77 41.46 3.79
4230 7391 7.953752 TCCATGCAAAATCAAATGATATAGCA 58.046 30.769 14.61 14.61 38.15 3.49
4231 7392 8.301720 TCTCCATGCAAAATCAAATGATATAGC 58.698 33.333 0.00 2.33 33.73 2.97
4235 7396 9.320352 CAAATCTCCATGCAAAATCAAATGATA 57.680 29.630 0.00 0.00 33.73 2.15
4236 7397 7.827236 ACAAATCTCCATGCAAAATCAAATGAT 59.173 29.630 0.00 0.00 36.07 2.45
4237 7398 7.162761 ACAAATCTCCATGCAAAATCAAATGA 58.837 30.769 0.00 0.00 0.00 2.57
4238 7399 7.372451 ACAAATCTCCATGCAAAATCAAATG 57.628 32.000 0.00 0.00 0.00 2.32
4239 7400 8.095792 TGTACAAATCTCCATGCAAAATCAAAT 58.904 29.630 0.00 0.00 0.00 2.32
4240 7401 7.384660 GTGTACAAATCTCCATGCAAAATCAAA 59.615 33.333 0.00 0.00 0.00 2.69
4241 7402 6.867816 GTGTACAAATCTCCATGCAAAATCAA 59.132 34.615 0.00 0.00 0.00 2.57
4242 7403 6.015603 TGTGTACAAATCTCCATGCAAAATCA 60.016 34.615 0.00 0.00 0.00 2.57
4243 7404 6.389091 TGTGTACAAATCTCCATGCAAAATC 58.611 36.000 0.00 0.00 0.00 2.17
4244 7405 6.343716 TGTGTACAAATCTCCATGCAAAAT 57.656 33.333 0.00 0.00 0.00 1.82
4245 7406 5.781210 TGTGTACAAATCTCCATGCAAAA 57.219 34.783 0.00 0.00 0.00 2.44
4246 7407 5.981088 ATGTGTACAAATCTCCATGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
4247 7408 5.981088 AATGTGTACAAATCTCCATGCAA 57.019 34.783 0.00 0.00 0.00 4.08
4248 7409 5.981088 AAATGTGTACAAATCTCCATGCA 57.019 34.783 0.00 0.00 0.00 3.96
4310 7471 4.857509 AACTAAGTCTCAGTCAGGTGAC 57.142 45.455 1.60 1.60 45.08 3.67
4311 7472 6.971726 TTTAACTAAGTCTCAGTCAGGTGA 57.028 37.500 0.00 0.00 0.00 4.02
4312 7473 7.607250 AGATTTAACTAAGTCTCAGTCAGGTG 58.393 38.462 0.00 0.00 27.57 4.00
4313 7474 7.784470 AGATTTAACTAAGTCTCAGTCAGGT 57.216 36.000 0.00 0.00 27.57 4.00
4330 7491 8.686334 GCCAGGTCTCAATCAATTAAGATTTAA 58.314 33.333 0.00 0.00 36.13 1.52
4331 7492 7.285401 GGCCAGGTCTCAATCAATTAAGATTTA 59.715 37.037 0.00 0.00 36.13 1.40
4332 7493 6.097412 GGCCAGGTCTCAATCAATTAAGATTT 59.903 38.462 0.00 0.00 36.13 2.17
4333 7494 5.595952 GGCCAGGTCTCAATCAATTAAGATT 59.404 40.000 0.00 0.00 38.72 2.40
4334 7495 5.136105 GGCCAGGTCTCAATCAATTAAGAT 58.864 41.667 0.00 0.00 0.00 2.40
4335 7496 4.018506 TGGCCAGGTCTCAATCAATTAAGA 60.019 41.667 0.00 0.00 0.00 2.10
4336 7497 4.096984 GTGGCCAGGTCTCAATCAATTAAG 59.903 45.833 5.11 0.00 0.00 1.85
4337 7498 4.016444 GTGGCCAGGTCTCAATCAATTAA 58.984 43.478 5.11 0.00 0.00 1.40
4338 7499 3.010027 TGTGGCCAGGTCTCAATCAATTA 59.990 43.478 5.11 0.00 0.00 1.40
4339 7500 2.225091 TGTGGCCAGGTCTCAATCAATT 60.225 45.455 5.11 0.00 0.00 2.32
4340 7501 1.355381 TGTGGCCAGGTCTCAATCAAT 59.645 47.619 5.11 0.00 0.00 2.57
4341 7502 0.770499 TGTGGCCAGGTCTCAATCAA 59.230 50.000 5.11 0.00 0.00 2.57
4342 7503 0.036732 GTGTGGCCAGGTCTCAATCA 59.963 55.000 5.11 0.00 0.00 2.57
4343 7504 0.678048 GGTGTGGCCAGGTCTCAATC 60.678 60.000 5.11 0.00 37.17 2.67
4344 7505 1.380302 GGTGTGGCCAGGTCTCAAT 59.620 57.895 5.11 0.00 37.17 2.57
4345 7506 2.829384 GGGTGTGGCCAGGTCTCAA 61.829 63.158 5.11 0.00 39.65 3.02
4346 7507 3.249189 GGGTGTGGCCAGGTCTCA 61.249 66.667 5.11 0.00 39.65 3.27
4347 7508 2.930562 AGGGTGTGGCCAGGTCTC 60.931 66.667 5.11 0.00 39.65 3.36
4348 7509 3.252284 CAGGGTGTGGCCAGGTCT 61.252 66.667 5.11 0.00 39.65 3.85
4349 7510 2.640581 AAACAGGGTGTGGCCAGGTC 62.641 60.000 5.11 0.00 39.65 3.85
4350 7511 2.236959 AAAACAGGGTGTGGCCAGGT 62.237 55.000 5.11 0.00 39.65 4.00
4351 7512 1.048160 AAAAACAGGGTGTGGCCAGG 61.048 55.000 5.11 0.00 39.65 4.45
4352 7513 2.515288 AAAAACAGGGTGTGGCCAG 58.485 52.632 5.11 0.00 39.65 4.85
4353 7514 4.796408 AAAAACAGGGTGTGGCCA 57.204 50.000 0.00 0.00 39.65 5.36
4381 7542 2.023673 TCCTGTGTGTGCCTTCAAAAG 58.976 47.619 0.00 0.00 0.00 2.27
4382 7543 2.023673 CTCCTGTGTGTGCCTTCAAAA 58.976 47.619 0.00 0.00 0.00 2.44
4383 7544 1.064758 ACTCCTGTGTGTGCCTTCAAA 60.065 47.619 0.00 0.00 0.00 2.69
4384 7545 0.546122 ACTCCTGTGTGTGCCTTCAA 59.454 50.000 0.00 0.00 0.00 2.69
4385 7546 0.179048 CACTCCTGTGTGTGCCTTCA 60.179 55.000 0.00 0.00 39.24 3.02
4386 7547 0.106708 TCACTCCTGTGTGTGCCTTC 59.893 55.000 0.00 0.00 44.14 3.46
4387 7548 0.767375 ATCACTCCTGTGTGTGCCTT 59.233 50.000 0.00 0.00 44.14 4.35
4388 7549 0.035881 CATCACTCCTGTGTGTGCCT 59.964 55.000 0.00 0.00 44.14 4.75
4389 7550 0.035317 TCATCACTCCTGTGTGTGCC 59.965 55.000 0.00 0.00 44.14 5.01
4390 7551 1.532868 GTTCATCACTCCTGTGTGTGC 59.467 52.381 0.00 0.00 44.14 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.