Multiple sequence alignment - TraesCS6D01G252200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G252200 chr6D 100.000 4697 0 0 1 4697 356287252 356282556 0.000000e+00 8674.0
1 TraesCS6D01G252200 chr6B 93.229 3308 139 33 1 3256 537467064 537463790 0.000000e+00 4789.0
2 TraesCS6D01G252200 chr6B 92.357 785 39 10 3369 4143 537463535 537462762 0.000000e+00 1098.0
3 TraesCS6D01G252200 chr6B 90.000 100 10 0 4145 4244 537462700 537462601 3.810000e-26 130.0
4 TraesCS6D01G252200 chr6A 92.085 2173 89 26 119 2257 498955033 498952910 0.000000e+00 2983.0
5 TraesCS6D01G252200 chr6A 92.802 1028 46 19 2256 3265 498952652 498951635 0.000000e+00 1463.0
6 TraesCS6D01G252200 chr6A 91.294 827 44 17 3283 4094 498951576 498950763 0.000000e+00 1103.0
7 TraesCS6D01G252200 chr6A 86.614 127 16 1 4246 4372 498950672 498950547 6.340000e-29 139.0
8 TraesCS6D01G252200 chr6A 95.745 47 2 0 1 47 498955109 498955063 5.040000e-10 76.8
9 TraesCS6D01G252200 chr5D 96.711 152 4 1 4547 4697 67875737 67875888 7.800000e-63 252.0
10 TraesCS6D01G252200 chr3A 94.186 86 1 1 4471 4552 467879443 467879528 1.370000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G252200 chr6D 356282556 356287252 4696 True 8674.000000 8674 100.000 1 4697 1 chr6D.!!$R1 4696
1 TraesCS6D01G252200 chr6B 537462601 537467064 4463 True 2005.666667 4789 91.862 1 4244 3 chr6B.!!$R1 4243
2 TraesCS6D01G252200 chr6A 498950547 498955109 4562 True 1152.960000 2983 91.708 1 4372 5 chr6A.!!$R1 4371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 957 0.036388 TGATTCAGGACCTCGTTGGC 60.036 55.0 0.00 0.0 40.22 4.52 F
1335 1351 0.036294 GTAGCCTGCCGAAGTTTCCT 60.036 55.0 0.00 0.0 0.00 3.36 F
1632 1675 0.826715 TCCTTGAGCCTCAGGATTCG 59.173 55.0 5.25 0.0 0.00 3.34 F
3021 3365 0.954449 CTGGAGCTGAGTTGTGCCAG 60.954 60.0 0.00 0.0 37.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1936 1.877443 CTGGTAAACAGGAACAACCGG 59.123 52.381 0.0 0.0 43.70 5.28 R
3273 3803 1.238439 GCACCAGCAAGTCAGCTAAA 58.762 50.000 0.0 0.0 44.54 1.85 R
3399 3933 0.036388 ATCACGGCAACTCGGAACAT 60.036 50.000 0.0 0.0 0.00 2.71 R
4473 5080 0.036010 CGTCCATTCCCTGCTTCTGT 60.036 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 1.266989 CCTCCCTGTTTTCTTTCGTGC 59.733 52.381 0.00 0.00 0.00 5.34
231 239 6.037830 GCGAGGAGGTGTATTTTATTTTAGCA 59.962 38.462 0.00 0.00 0.00 3.49
232 240 7.255139 GCGAGGAGGTGTATTTTATTTTAGCAT 60.255 37.037 0.00 0.00 0.00 3.79
233 241 9.268268 CGAGGAGGTGTATTTTATTTTAGCATA 57.732 33.333 0.00 0.00 0.00 3.14
299 307 1.522092 GCTTATTTTGCCCTGCCCC 59.478 57.895 0.00 0.00 0.00 5.80
545 556 2.440247 CGGAGGTGGATTTGGGGC 60.440 66.667 0.00 0.00 0.00 5.80
553 564 0.625849 TGGATTTGGGGCTCTCTTCC 59.374 55.000 0.00 0.00 0.00 3.46
582 593 0.463833 GTAGGCAGATTTGGTCGGGG 60.464 60.000 0.00 0.00 0.00 5.73
583 594 2.265467 TAGGCAGATTTGGTCGGGGC 62.265 60.000 0.00 0.00 33.72 5.80
603 614 1.447140 TCGGGGTCGAATTTCTGCG 60.447 57.895 0.00 0.00 43.03 5.18
712 727 8.567285 TGTGGATTTCTCCTTTATTCTCTTTC 57.433 34.615 0.00 0.00 42.59 2.62
909 925 3.776969 TGATCCATTCTAACCTGCTCTGT 59.223 43.478 0.00 0.00 0.00 3.41
941 957 0.036388 TGATTCAGGACCTCGTTGGC 60.036 55.000 0.00 0.00 40.22 4.52
1131 1147 1.045911 AGTCCTCCGAGAAGCCCATC 61.046 60.000 0.00 0.00 0.00 3.51
1246 1262 1.520787 GGAACCTGGTCGCCGTATG 60.521 63.158 0.00 0.00 0.00 2.39
1266 1282 2.997303 TGTCATCAACCATAAACGTCGG 59.003 45.455 0.00 0.00 0.00 4.79
1335 1351 0.036294 GTAGCCTGCCGAAGTTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
1620 1663 3.733077 GCGAAAATGATGCCTTCCTTGAG 60.733 47.826 0.00 0.00 0.00 3.02
1632 1675 0.826715 TCCTTGAGCCTCAGGATTCG 59.173 55.000 5.25 0.00 0.00 3.34
1866 1909 8.960591 AGCAATTAGTTTGTCTATATGCTTTGT 58.039 29.630 0.00 0.00 42.67 2.83
1867 1910 9.013490 GCAATTAGTTTGTCTATATGCTTTGTG 57.987 33.333 0.00 0.00 37.48 3.33
1891 1936 1.206610 TGCTGAACTGATCTCTCTGGC 59.793 52.381 0.00 0.00 0.00 4.85
1910 1955 1.970092 CCGGTTGTTCCTGTTTACCA 58.030 50.000 0.00 0.00 0.00 3.25
1985 2037 7.750903 GGTTGAAGATAGCAATTAGTTTGTGTC 59.249 37.037 0.00 0.00 37.65 3.67
1991 2043 5.567138 AGCAATTAGTTTGTGTCTATGCC 57.433 39.130 0.00 0.00 37.65 4.40
2141 2195 8.314751 CCATTGGATAGAATACTCTCGGTTTAT 58.685 37.037 0.00 0.00 32.70 1.40
2150 2206 8.842280 AGAATACTCTCGGTTTATAGTTCTCTG 58.158 37.037 0.00 0.00 0.00 3.35
2176 2234 4.464008 TCCAAAAGCTCAGTCATGTTTCT 58.536 39.130 0.00 0.00 0.00 2.52
2386 2714 5.095490 GCTATGCAGGTTTATTGTGTGTTC 58.905 41.667 0.00 0.00 0.00 3.18
2444 2772 8.052748 TGTTTCTGTATGGCTTCCTATATTTGT 58.947 33.333 0.00 0.00 0.00 2.83
2475 2804 5.824624 CCTTATAGTCAATGTGCCATCTGTT 59.175 40.000 0.00 0.00 0.00 3.16
2560 2899 3.234353 TGCTAGCAGTATGGCTATGAGT 58.766 45.455 14.93 0.00 44.78 3.41
2568 2907 6.098982 AGCAGTATGGCTATGAGTTAAAGTCT 59.901 38.462 0.00 0.00 43.70 3.24
2570 2909 7.926555 GCAGTATGGCTATGAGTTAAAGTCTTA 59.073 37.037 0.00 0.00 35.86 2.10
2706 3049 5.393068 TGGGATCATCTTTTGCCTTCTAT 57.607 39.130 0.00 0.00 0.00 1.98
2904 3248 0.975040 AGGTAGCTGAGACCTGGCAG 60.975 60.000 7.75 7.75 45.90 4.85
3021 3365 0.954449 CTGGAGCTGAGTTGTGCCAG 60.954 60.000 0.00 0.00 37.21 4.85
3244 3588 9.846248 AACTCAGTACATTAATCTTTGCATTTC 57.154 29.630 0.00 0.00 0.00 2.17
3252 3596 9.716507 ACATTAATCTTTGCATTTCGTACATAC 57.283 29.630 0.00 0.00 0.00 2.39
3256 3600 8.895932 AATCTTTGCATTTCGTACATACTTTC 57.104 30.769 0.00 0.00 0.00 2.62
3258 3602 7.866729 TCTTTGCATTTCGTACATACTTTCAA 58.133 30.769 0.00 0.00 0.00 2.69
3292 3822 1.238439 TTTAGCTGACTTGCTGGTGC 58.762 50.000 0.00 0.00 43.87 5.01
3312 3842 5.587443 GGTGCCAACCGTTAATCTTACTTAT 59.413 40.000 0.00 0.00 36.51 1.73
3338 3868 4.885907 CACATAAATCTCCTGTTCCATGCT 59.114 41.667 0.00 0.00 0.00 3.79
3346 3876 4.074970 CTCCTGTTCCATGCTTTAGTTGT 58.925 43.478 0.00 0.00 0.00 3.32
3355 3885 6.222389 TCCATGCTTTAGTTGTGAAAAATGG 58.778 36.000 0.00 0.00 0.00 3.16
3358 3888 4.808364 TGCTTTAGTTGTGAAAAATGGCAC 59.192 37.500 0.00 0.00 35.63 5.01
3360 3890 5.600696 CTTTAGTTGTGAAAAATGGCACCT 58.399 37.500 0.00 0.00 34.19 4.00
3363 3893 1.117994 TGTGAAAAATGGCACCTGCA 58.882 45.000 0.00 0.00 44.36 4.41
3365 3895 1.069049 GTGAAAAATGGCACCTGCAGT 59.931 47.619 13.81 0.00 44.36 4.40
3399 3933 6.647334 TGTTGAATTTAAGGAGACATGCAA 57.353 33.333 0.00 0.00 0.00 4.08
3414 3949 1.154225 GCAATGTTCCGAGTTGCCG 60.154 57.895 0.00 0.00 41.67 5.69
3419 3954 0.250124 TGTTCCGAGTTGCCGTGATT 60.250 50.000 0.00 0.00 0.00 2.57
3420 3955 0.165944 GTTCCGAGTTGCCGTGATTG 59.834 55.000 0.00 0.00 0.00 2.67
3421 3956 0.034198 TTCCGAGTTGCCGTGATTGA 59.966 50.000 0.00 0.00 0.00 2.57
3424 3965 2.093921 TCCGAGTTGCCGTGATTGAATA 60.094 45.455 0.00 0.00 0.00 1.75
3431 3972 5.470098 AGTTGCCGTGATTGAATACATATCC 59.530 40.000 0.00 0.00 0.00 2.59
3434 3975 4.997395 GCCGTGATTGAATACATATCCTGT 59.003 41.667 0.00 0.00 42.13 4.00
3436 3977 6.347725 GCCGTGATTGAATACATATCCTGTTC 60.348 42.308 0.00 0.00 39.39 3.18
3439 3980 8.830580 CGTGATTGAATACATATCCTGTTCTTT 58.169 33.333 0.00 0.00 39.39 2.52
3446 3987 5.886960 ACATATCCTGTTCTTTGCTGTTC 57.113 39.130 0.00 0.00 32.90 3.18
3450 3991 3.206150 TCCTGTTCTTTGCTGTTCTGTC 58.794 45.455 0.00 0.00 0.00 3.51
3472 4013 7.372714 TGTCAGAAACATTCATTGGAAGATTG 58.627 34.615 0.00 0.00 36.25 2.67
3481 4023 7.118680 ACATTCATTGGAAGATTGCAAATGAAC 59.881 33.333 18.01 5.10 41.79 3.18
3485 4027 4.823157 TGGAAGATTGCAAATGAACATGG 58.177 39.130 1.71 0.00 0.00 3.66
3493 4035 3.006323 TGCAAATGAACATGGGGTGTAAC 59.994 43.478 0.00 0.00 41.14 2.50
3500 4042 2.858745 ACATGGGGTGTAACACTTGTC 58.141 47.619 0.00 0.00 42.68 3.18
3516 4058 6.607019 ACACTTGTCCCTAAATGTTTTCCTA 58.393 36.000 0.00 0.00 0.00 2.94
3520 4062 9.816787 ACTTGTCCCTAAATGTTTTCCTATTAA 57.183 29.630 0.00 0.00 0.00 1.40
3537 4079 6.925718 TCCTATTAAATCTTGCAGAGATGTCG 59.074 38.462 10.78 0.00 44.41 4.35
3558 4100 2.427410 CAACAGCGGAACAAGCGC 60.427 61.111 0.00 0.00 40.04 5.92
3870 4412 0.920763 AGTGGAATGGGCCATCTCCA 60.921 55.000 30.32 30.32 40.68 3.86
3871 4413 0.186873 GTGGAATGGGCCATCTCCAT 59.813 55.000 33.45 17.51 46.11 3.41
3872 4414 0.479815 TGGAATGGGCCATCTCCATC 59.520 55.000 30.32 20.77 43.61 3.51
3873 4415 0.251519 GGAATGGGCCATCTCCATCC 60.252 60.000 28.24 23.26 43.61 3.51
3874 4416 0.607489 GAATGGGCCATCTCCATCCG 60.607 60.000 21.48 0.00 43.61 4.18
3875 4417 2.703675 AATGGGCCATCTCCATCCGC 62.704 60.000 21.48 0.00 43.61 5.54
3895 4437 2.124570 CCAGGATTGGCCCGACTG 60.125 66.667 0.00 3.39 37.73 3.51
3930 4472 1.066430 TCCCTCGTTGCATAGTTGGTC 60.066 52.381 0.00 0.00 0.00 4.02
4073 4618 3.303132 CGTGCTGTTTCTGTAGGTTTGAC 60.303 47.826 0.00 0.00 0.00 3.18
4074 4619 3.877508 GTGCTGTTTCTGTAGGTTTGACT 59.122 43.478 0.00 0.00 0.00 3.41
4075 4620 5.054477 GTGCTGTTTCTGTAGGTTTGACTA 58.946 41.667 0.00 0.00 0.00 2.59
4113 4658 5.961395 TTACGTTTCTGTGTTTCTCAGTC 57.039 39.130 0.00 0.00 34.86 3.51
4205 4812 0.971386 GGTACTCCACCCGAAAGACA 59.029 55.000 0.00 0.00 42.07 3.41
4210 4817 2.076863 CTCCACCCGAAAGACATTGTC 58.923 52.381 8.82 8.82 0.00 3.18
4212 4819 1.544537 CCACCCGAAAGACATTGTCCA 60.545 52.381 13.14 0.00 32.18 4.02
4213 4820 1.806542 CACCCGAAAGACATTGTCCAG 59.193 52.381 13.14 2.86 32.18 3.86
4222 4829 2.107204 AGACATTGTCCAGCACTCCTTT 59.893 45.455 13.14 0.00 32.18 3.11
4241 4848 5.779771 TCCTTTGGCTCTTTATTCAACCAAT 59.220 36.000 0.00 0.00 37.06 3.16
4244 4851 6.916360 TTGGCTCTTTATTCAACCAATCTT 57.084 33.333 0.00 0.00 32.44 2.40
4265 4872 0.684805 CGCAAGAGGAGTAGGGACCT 60.685 60.000 0.00 0.00 43.02 3.85
4279 4886 0.531311 GGACCTGTCCGTCACGTTTT 60.531 55.000 0.00 0.00 40.36 2.43
4280 4887 0.580104 GACCTGTCCGTCACGTTTTG 59.420 55.000 0.00 0.00 32.74 2.44
4305 4912 4.085357 TCTTAGGTTTTGCTTCTCTGCA 57.915 40.909 0.00 0.00 41.65 4.41
4324 4931 1.062002 CAATATTGACGTGGTGGCGAC 59.938 52.381 10.04 0.00 35.59 5.19
4333 4940 0.804933 GTGGTGGCGACGATTACCTC 60.805 60.000 14.04 8.69 34.32 3.85
4344 4951 2.821307 GATTACCTCGACGACGTCTT 57.179 50.000 24.36 3.52 40.69 3.01
4356 4963 0.524816 GACGTCTTATTCGGCGCTGA 60.525 55.000 16.69 16.69 0.00 4.26
4357 4964 0.801067 ACGTCTTATTCGGCGCTGAC 60.801 55.000 20.84 5.87 0.00 3.51
4362 4969 2.228389 TTATTCGGCGCTGACGGGAA 62.228 55.000 20.84 3.78 40.57 3.97
4372 4979 0.890996 CTGACGGGAAGGCTTTTGCT 60.891 55.000 0.00 0.00 46.54 3.91
4373 4980 0.467290 TGACGGGAAGGCTTTTGCTT 60.467 50.000 0.00 0.00 46.54 3.91
4375 4982 0.389025 ACGGGAAGGCTTTTGCTTTG 59.611 50.000 0.00 0.00 45.01 2.77
4386 4993 3.665544 TTGCTTTGCAAGGCTGTTC 57.334 47.368 30.40 5.71 43.99 3.18
4387 4994 1.113788 TTGCTTTGCAAGGCTGTTCT 58.886 45.000 30.40 0.00 43.99 3.01
4388 4995 0.386476 TGCTTTGCAAGGCTGTTCTG 59.614 50.000 30.40 2.47 34.76 3.02
4389 4996 0.319297 GCTTTGCAAGGCTGTTCTGG 60.319 55.000 24.83 0.00 0.00 3.86
4390 4997 1.035139 CTTTGCAAGGCTGTTCTGGT 58.965 50.000 0.00 0.00 0.00 4.00
4391 4998 1.410153 CTTTGCAAGGCTGTTCTGGTT 59.590 47.619 0.00 0.00 0.00 3.67
4392 4999 0.746063 TTGCAAGGCTGTTCTGGTTG 59.254 50.000 0.00 0.00 0.00 3.77
4393 5000 1.108727 TGCAAGGCTGTTCTGGTTGG 61.109 55.000 0.00 0.00 0.00 3.77
4394 5001 1.809567 GCAAGGCTGTTCTGGTTGGG 61.810 60.000 0.00 0.00 0.00 4.12
4395 5002 1.153756 AAGGCTGTTCTGGTTGGGG 59.846 57.895 0.00 0.00 0.00 4.96
4396 5003 1.655114 AAGGCTGTTCTGGTTGGGGT 61.655 55.000 0.00 0.00 0.00 4.95
4397 5004 1.903404 GGCTGTTCTGGTTGGGGTG 60.903 63.158 0.00 0.00 0.00 4.61
4398 5005 1.150536 GCTGTTCTGGTTGGGGTGA 59.849 57.895 0.00 0.00 0.00 4.02
4399 5006 0.251341 GCTGTTCTGGTTGGGGTGAT 60.251 55.000 0.00 0.00 0.00 3.06
4400 5007 1.538047 CTGTTCTGGTTGGGGTGATG 58.462 55.000 0.00 0.00 0.00 3.07
4401 5008 0.539438 TGTTCTGGTTGGGGTGATGC 60.539 55.000 0.00 0.00 0.00 3.91
4402 5009 0.251341 GTTCTGGTTGGGGTGATGCT 60.251 55.000 0.00 0.00 0.00 3.79
4403 5010 0.038166 TTCTGGTTGGGGTGATGCTC 59.962 55.000 0.00 0.00 0.00 4.26
4404 5011 1.379044 CTGGTTGGGGTGATGCTCC 60.379 63.158 0.00 0.00 38.57 4.70
4409 5016 1.224315 TGGGGTGATGCTCCAATCG 59.776 57.895 0.00 0.00 46.79 3.34
4410 5017 1.271127 TGGGGTGATGCTCCAATCGA 61.271 55.000 0.00 0.00 46.79 3.59
4411 5018 0.109342 GGGGTGATGCTCCAATCGAT 59.891 55.000 0.00 0.00 37.78 3.59
4412 5019 1.233019 GGGTGATGCTCCAATCGATG 58.767 55.000 0.00 0.00 0.00 3.84
4422 5029 2.737467 CCAATCGATGGTGCTTTACG 57.263 50.000 0.00 0.00 44.85 3.18
4423 5030 2.276201 CCAATCGATGGTGCTTTACGA 58.724 47.619 0.00 0.00 44.85 3.43
4424 5031 2.872245 CCAATCGATGGTGCTTTACGAT 59.128 45.455 0.00 0.00 44.85 3.73
4426 5033 4.201910 CCAATCGATGGTGCTTTACGATTT 60.202 41.667 0.00 0.00 46.43 2.17
4427 5034 5.007234 CCAATCGATGGTGCTTTACGATTTA 59.993 40.000 0.00 0.00 46.43 1.40
4428 5035 6.293407 CCAATCGATGGTGCTTTACGATTTAT 60.293 38.462 0.00 0.00 46.43 1.40
4429 5036 7.095397 CCAATCGATGGTGCTTTACGATTTATA 60.095 37.037 0.00 0.00 46.43 0.98
4430 5037 7.582435 ATCGATGGTGCTTTACGATTTATAG 57.418 36.000 0.00 0.00 40.00 1.31
4431 5038 6.741109 TCGATGGTGCTTTACGATTTATAGA 58.259 36.000 0.00 0.00 0.00 1.98
4432 5039 7.375834 TCGATGGTGCTTTACGATTTATAGAT 58.624 34.615 0.00 0.00 0.00 1.98
4433 5040 7.541091 TCGATGGTGCTTTACGATTTATAGATC 59.459 37.037 0.00 0.00 0.00 2.75
4434 5041 7.542477 CGATGGTGCTTTACGATTTATAGATCT 59.458 37.037 0.00 0.00 0.00 2.75
4435 5042 8.764524 ATGGTGCTTTACGATTTATAGATCTC 57.235 34.615 0.00 0.00 0.00 2.75
4436 5043 6.861572 TGGTGCTTTACGATTTATAGATCTCG 59.138 38.462 0.00 0.00 37.17 4.04
4437 5044 6.862090 GGTGCTTTACGATTTATAGATCTCGT 59.138 38.462 0.00 4.44 45.40 4.18
4438 5045 7.381678 GGTGCTTTACGATTTATAGATCTCGTT 59.618 37.037 10.20 0.00 41.17 3.85
4439 5046 8.753175 GTGCTTTACGATTTATAGATCTCGTTT 58.247 33.333 10.20 0.00 41.17 3.60
4440 5047 8.965172 TGCTTTACGATTTATAGATCTCGTTTC 58.035 33.333 10.20 0.00 41.17 2.78
4441 5048 8.965172 GCTTTACGATTTATAGATCTCGTTTCA 58.035 33.333 10.20 0.00 41.17 2.69
4443 5050 9.459640 TTTACGATTTATAGATCTCGTTTCAGG 57.540 33.333 10.20 0.00 41.17 3.86
4444 5051 6.448006 ACGATTTATAGATCTCGTTTCAGGG 58.552 40.000 0.00 0.00 41.17 4.45
4445 5052 5.346281 CGATTTATAGATCTCGTTTCAGGGC 59.654 44.000 0.00 0.00 0.00 5.19
4446 5053 4.602340 TTATAGATCTCGTTTCAGGGCC 57.398 45.455 0.00 0.00 0.00 5.80
4447 5054 0.744874 TAGATCTCGTTTCAGGGCCG 59.255 55.000 0.00 0.00 0.00 6.13
4448 5055 0.970937 AGATCTCGTTTCAGGGCCGA 60.971 55.000 0.00 0.00 0.00 5.54
4449 5056 0.806492 GATCTCGTTTCAGGGCCGAC 60.806 60.000 0.00 0.00 0.00 4.79
4450 5057 2.558554 ATCTCGTTTCAGGGCCGACG 62.559 60.000 15.28 15.28 36.89 5.12
4451 5058 3.277211 CTCGTTTCAGGGCCGACGA 62.277 63.158 20.24 20.24 41.62 4.20
4452 5059 2.125673 CGTTTCAGGGCCGACGAT 60.126 61.111 16.05 0.00 37.69 3.73
4453 5060 1.140161 CGTTTCAGGGCCGACGATA 59.860 57.895 16.05 0.39 37.69 2.92
4454 5061 0.870307 CGTTTCAGGGCCGACGATAG 60.870 60.000 16.05 0.00 37.69 2.08
4455 5062 0.458669 GTTTCAGGGCCGACGATAGA 59.541 55.000 0.00 0.00 41.38 1.98
4456 5063 1.134907 GTTTCAGGGCCGACGATAGAA 60.135 52.381 0.00 0.00 41.38 2.10
4457 5064 1.410004 TTCAGGGCCGACGATAGAAT 58.590 50.000 0.00 0.00 41.38 2.40
4458 5065 1.410004 TCAGGGCCGACGATAGAATT 58.590 50.000 0.00 0.00 41.38 2.17
4459 5066 1.068588 TCAGGGCCGACGATAGAATTG 59.931 52.381 0.00 0.00 41.38 2.32
4460 5067 1.068588 CAGGGCCGACGATAGAATTGA 59.931 52.381 0.00 0.00 41.38 2.57
4461 5068 1.068741 AGGGCCGACGATAGAATTGAC 59.931 52.381 0.00 0.00 41.38 3.18
4462 5069 1.202486 GGGCCGACGATAGAATTGACA 60.202 52.381 0.00 0.00 41.38 3.58
4463 5070 2.546778 GGCCGACGATAGAATTGACAA 58.453 47.619 0.00 0.00 41.38 3.18
4464 5071 2.540101 GGCCGACGATAGAATTGACAAG 59.460 50.000 0.00 0.00 41.38 3.16
4465 5072 3.444916 GCCGACGATAGAATTGACAAGA 58.555 45.455 0.00 0.00 41.38 3.02
4466 5073 3.863424 GCCGACGATAGAATTGACAAGAA 59.137 43.478 0.00 0.00 41.38 2.52
4467 5074 4.026475 GCCGACGATAGAATTGACAAGAAG 60.026 45.833 0.00 0.00 41.38 2.85
4468 5075 5.340803 CCGACGATAGAATTGACAAGAAGA 58.659 41.667 0.00 0.00 41.38 2.87
4469 5076 5.457148 CCGACGATAGAATTGACAAGAAGAG 59.543 44.000 0.00 0.00 41.38 2.85
4470 5077 6.258899 CGACGATAGAATTGACAAGAAGAGA 58.741 40.000 0.00 0.00 41.38 3.10
4471 5078 6.413526 CGACGATAGAATTGACAAGAAGAGAG 59.586 42.308 0.00 0.00 41.38 3.20
4472 5079 6.039616 ACGATAGAATTGACAAGAAGAGAGC 58.960 40.000 0.00 0.00 41.38 4.09
4473 5080 6.038985 CGATAGAATTGACAAGAAGAGAGCA 58.961 40.000 0.00 0.00 39.76 4.26
4474 5081 6.019961 CGATAGAATTGACAAGAAGAGAGCAC 60.020 42.308 0.00 0.00 39.76 4.40
4475 5082 4.965814 AGAATTGACAAGAAGAGAGCACA 58.034 39.130 0.00 0.00 0.00 4.57
4476 5083 4.996122 AGAATTGACAAGAAGAGAGCACAG 59.004 41.667 0.00 0.00 0.00 3.66
4477 5084 4.613925 ATTGACAAGAAGAGAGCACAGA 57.386 40.909 0.00 0.00 0.00 3.41
4478 5085 4.406648 TTGACAAGAAGAGAGCACAGAA 57.593 40.909 0.00 0.00 0.00 3.02
4479 5086 3.987547 TGACAAGAAGAGAGCACAGAAG 58.012 45.455 0.00 0.00 0.00 2.85
4480 5087 2.736192 GACAAGAAGAGAGCACAGAAGC 59.264 50.000 0.00 0.00 0.00 3.86
4481 5088 2.103771 ACAAGAAGAGAGCACAGAAGCA 59.896 45.455 0.00 0.00 36.85 3.91
4482 5089 2.737783 CAAGAAGAGAGCACAGAAGCAG 59.262 50.000 0.00 0.00 36.85 4.24
4483 5090 1.275856 AGAAGAGAGCACAGAAGCAGG 59.724 52.381 0.00 0.00 36.85 4.85
4484 5091 0.324285 AAGAGAGCACAGAAGCAGGG 59.676 55.000 0.00 0.00 36.85 4.45
4485 5092 0.543883 AGAGAGCACAGAAGCAGGGA 60.544 55.000 0.00 0.00 36.85 4.20
4486 5093 0.322975 GAGAGCACAGAAGCAGGGAA 59.677 55.000 0.00 0.00 36.85 3.97
4487 5094 0.990374 AGAGCACAGAAGCAGGGAAT 59.010 50.000 0.00 0.00 36.85 3.01
4488 5095 1.093159 GAGCACAGAAGCAGGGAATG 58.907 55.000 0.00 0.00 36.85 2.67
4489 5096 0.323178 AGCACAGAAGCAGGGAATGG 60.323 55.000 0.00 0.00 36.85 3.16
4490 5097 0.322816 GCACAGAAGCAGGGAATGGA 60.323 55.000 0.00 0.00 0.00 3.41
4491 5098 1.457346 CACAGAAGCAGGGAATGGAC 58.543 55.000 0.00 0.00 0.00 4.02
4492 5099 0.036010 ACAGAAGCAGGGAATGGACG 60.036 55.000 0.00 0.00 0.00 4.79
4493 5100 0.250234 CAGAAGCAGGGAATGGACGA 59.750 55.000 0.00 0.00 0.00 4.20
4494 5101 0.250513 AGAAGCAGGGAATGGACGAC 59.749 55.000 0.00 0.00 0.00 4.34
4495 5102 0.744771 GAAGCAGGGAATGGACGACC 60.745 60.000 0.00 0.00 0.00 4.79
4504 5111 4.665431 TGGACGACCATTGTGACG 57.335 55.556 1.37 0.00 41.77 4.35
4505 5112 2.042800 TGGACGACCATTGTGACGA 58.957 52.632 1.37 0.00 41.77 4.20
4506 5113 0.319211 TGGACGACCATTGTGACGAC 60.319 55.000 1.37 0.00 41.77 4.34
4507 5114 1.342082 GGACGACCATTGTGACGACG 61.342 60.000 0.00 0.00 35.97 5.12
4508 5115 1.941476 GACGACCATTGTGACGACGC 61.941 60.000 0.00 0.00 0.00 5.19
4509 5116 2.769617 GACCATTGTGACGACGCG 59.230 61.111 3.53 3.53 0.00 6.01
4510 5117 2.019951 GACCATTGTGACGACGCGT 61.020 57.895 13.85 13.85 45.10 6.01
4511 5118 0.730155 GACCATTGTGACGACGCGTA 60.730 55.000 13.97 0.00 41.37 4.42
4512 5119 1.005294 ACCATTGTGACGACGCGTAC 61.005 55.000 13.97 7.46 41.37 3.67
4513 5120 1.335836 CATTGTGACGACGCGTACG 59.664 57.895 13.97 20.00 41.37 3.67
4530 5137 4.891277 GTACGTACGAGATCTCTAGAGC 57.109 50.000 24.41 1.95 0.00 4.09
4531 5138 3.738830 ACGTACGAGATCTCTAGAGCT 57.261 47.619 24.41 5.16 44.40 4.09
4536 5143 2.561478 GAGATCTCTAGAGCTCGGGT 57.439 55.000 15.80 0.00 45.86 5.28
4537 5144 2.858745 GAGATCTCTAGAGCTCGGGTT 58.141 52.381 15.80 0.00 45.86 4.11
4538 5145 4.010667 GAGATCTCTAGAGCTCGGGTTA 57.989 50.000 15.80 0.00 45.86 2.85
4539 5146 4.585879 GAGATCTCTAGAGCTCGGGTTAT 58.414 47.826 15.80 0.33 45.86 1.89
4540 5147 5.736813 GAGATCTCTAGAGCTCGGGTTATA 58.263 45.833 15.80 0.00 45.86 0.98
4541 5148 5.493809 AGATCTCTAGAGCTCGGGTTATAC 58.506 45.833 15.35 0.00 35.67 1.47
4542 5149 4.978438 TCTCTAGAGCTCGGGTTATACT 57.022 45.455 15.35 0.00 0.00 2.12
4543 5150 5.307544 TCTCTAGAGCTCGGGTTATACTT 57.692 43.478 15.35 0.00 0.00 2.24
4544 5151 5.064558 TCTCTAGAGCTCGGGTTATACTTG 58.935 45.833 15.35 0.00 0.00 3.16
4545 5152 4.142790 TCTAGAGCTCGGGTTATACTTGG 58.857 47.826 8.37 0.00 0.00 3.61
4546 5153 2.040178 AGAGCTCGGGTTATACTTGGG 58.960 52.381 8.37 0.00 0.00 4.12
4547 5154 1.761198 GAGCTCGGGTTATACTTGGGT 59.239 52.381 0.00 0.00 0.00 4.51
4548 5155 2.169978 GAGCTCGGGTTATACTTGGGTT 59.830 50.000 0.00 0.00 0.00 4.11
4549 5156 2.169978 AGCTCGGGTTATACTTGGGTTC 59.830 50.000 0.00 0.00 0.00 3.62
4550 5157 2.817901 CTCGGGTTATACTTGGGTTCG 58.182 52.381 0.00 0.00 0.00 3.95
4551 5158 1.134729 TCGGGTTATACTTGGGTTCGC 60.135 52.381 0.00 0.00 0.00 4.70
4552 5159 1.134610 CGGGTTATACTTGGGTTCGCT 60.135 52.381 0.00 0.00 0.00 4.93
4553 5160 2.558378 GGGTTATACTTGGGTTCGCTC 58.442 52.381 0.00 0.00 0.00 5.03
4554 5161 2.558378 GGTTATACTTGGGTTCGCTCC 58.442 52.381 0.00 0.00 0.00 4.70
4563 5170 4.144703 GTTCGCTCCCGACCCCTC 62.145 72.222 0.00 0.00 44.30 4.30
4568 5175 4.862823 CTCCCGACCCCTCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
4577 5184 3.775654 CCTCCCTCCCTGCGACAC 61.776 72.222 0.00 0.00 0.00 3.67
4578 5185 2.997315 CTCCCTCCCTGCGACACA 60.997 66.667 0.00 0.00 0.00 3.72
4579 5186 3.302347 CTCCCTCCCTGCGACACAC 62.302 68.421 0.00 0.00 0.00 3.82
4580 5187 3.314331 CCCTCCCTGCGACACACT 61.314 66.667 0.00 0.00 0.00 3.55
4581 5188 2.047844 CCTCCCTGCGACACACTG 60.048 66.667 0.00 0.00 0.00 3.66
4582 5189 2.047844 CTCCCTGCGACACACTGG 60.048 66.667 0.00 0.00 0.00 4.00
4583 5190 4.314440 TCCCTGCGACACACTGGC 62.314 66.667 0.00 0.00 0.00 4.85
4586 5193 4.624364 CTGCGACACACTGGCCCA 62.624 66.667 0.00 0.00 0.00 5.36
4587 5194 3.907260 CTGCGACACACTGGCCCAT 62.907 63.158 0.00 0.00 0.00 4.00
4588 5195 2.267642 GCGACACACTGGCCCATA 59.732 61.111 0.00 0.00 0.00 2.74
4589 5196 2.106683 GCGACACACTGGCCCATAC 61.107 63.158 0.00 0.00 0.00 2.39
4590 5197 1.449601 CGACACACTGGCCCATACC 60.450 63.158 0.00 0.00 0.00 2.73
4591 5198 1.449601 GACACACTGGCCCATACCG 60.450 63.158 0.00 0.00 0.00 4.02
4592 5199 2.124736 CACACTGGCCCATACCGG 60.125 66.667 0.00 0.00 42.28 5.28
4627 5234 4.436998 CCGTCGGCCACCTCACTC 62.437 72.222 2.24 0.00 0.00 3.51
4628 5235 4.436998 CGTCGGCCACCTCACTCC 62.437 72.222 2.24 0.00 0.00 3.85
4629 5236 2.997897 GTCGGCCACCTCACTCCT 60.998 66.667 2.24 0.00 0.00 3.69
4630 5237 2.680352 TCGGCCACCTCACTCCTC 60.680 66.667 2.24 0.00 0.00 3.71
4631 5238 3.775654 CGGCCACCTCACTCCTCC 61.776 72.222 2.24 0.00 0.00 4.30
4632 5239 2.284995 GGCCACCTCACTCCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
4633 5240 2.664081 GGCCACCTCACTCCTCCTG 61.664 68.421 0.00 0.00 0.00 3.86
4634 5241 2.985456 CCACCTCACTCCTCCTGC 59.015 66.667 0.00 0.00 0.00 4.85
4635 5242 1.915266 CCACCTCACTCCTCCTGCA 60.915 63.158 0.00 0.00 0.00 4.41
4636 5243 1.294780 CACCTCACTCCTCCTGCAC 59.705 63.158 0.00 0.00 0.00 4.57
4637 5244 1.915769 ACCTCACTCCTCCTGCACC 60.916 63.158 0.00 0.00 0.00 5.01
4638 5245 2.664081 CCTCACTCCTCCTGCACCC 61.664 68.421 0.00 0.00 0.00 4.61
4639 5246 1.611851 CTCACTCCTCCTGCACCCT 60.612 63.158 0.00 0.00 0.00 4.34
4640 5247 1.897225 CTCACTCCTCCTGCACCCTG 61.897 65.000 0.00 0.00 0.00 4.45
4641 5248 3.325753 ACTCCTCCTGCACCCTGC 61.326 66.667 0.00 0.00 45.29 4.85
4688 5295 4.379243 CTGCGCGGTCTGGGAGTT 62.379 66.667 8.83 0.00 0.00 3.01
4689 5296 4.373116 TGCGCGGTCTGGGAGTTC 62.373 66.667 8.83 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.823330 GGATCGCACCGTCGTCCT 61.823 66.667 0.00 0.00 31.61 3.85
84 85 4.027572 TGGAAAGCACGAAAGAAAACAG 57.972 40.909 0.00 0.00 0.00 3.16
99 100 2.303022 TCTTCTACCACTGCCTGGAAAG 59.697 50.000 0.00 0.00 43.95 2.62
115 116 2.358195 CGGGGGATGGGATTTTTCTTCT 60.358 50.000 0.00 0.00 0.00 2.85
116 117 2.031870 CGGGGGATGGGATTTTTCTTC 58.968 52.381 0.00 0.00 0.00 2.87
117 118 1.342975 CCGGGGGATGGGATTTTTCTT 60.343 52.381 0.00 0.00 0.00 2.52
140 141 6.291585 CGCTGATTTTTGGTATTTATTTCGCC 60.292 38.462 0.00 0.00 0.00 5.54
141 142 6.291585 CCGCTGATTTTTGGTATTTATTTCGC 60.292 38.462 0.00 0.00 0.00 4.70
231 239 8.282256 GGCAACCCCAGAGGAAAATATATATAT 58.718 37.037 0.00 0.00 39.89 0.86
232 240 7.582633 CGGCAACCCCAGAGGAAAATATATATA 60.583 40.741 0.00 0.00 39.89 0.86
233 241 6.494059 GGCAACCCCAGAGGAAAATATATAT 58.506 40.000 0.00 0.00 39.89 0.86
234 242 5.514136 CGGCAACCCCAGAGGAAAATATATA 60.514 44.000 0.00 0.00 39.89 0.86
301 309 3.128764 GCCTTTCGAAAGTTTATGAGGGG 59.871 47.826 30.51 16.58 34.20 4.79
302 310 3.181510 CGCCTTTCGAAAGTTTATGAGGG 60.182 47.826 30.51 19.38 41.67 4.30
303 311 3.682858 TCGCCTTTCGAAAGTTTATGAGG 59.317 43.478 30.51 18.05 45.36 3.86
304 312 4.921470 TCGCCTTTCGAAAGTTTATGAG 57.079 40.909 30.51 18.84 45.36 2.90
560 571 0.739462 CGACCAAATCTGCCTACGCA 60.739 55.000 0.00 0.00 44.78 5.24
568 579 1.369091 CGAAGCCCCGACCAAATCTG 61.369 60.000 0.00 0.00 0.00 2.90
603 614 3.202706 GAATCGAACAGGCCCGCC 61.203 66.667 0.00 0.00 0.00 6.13
707 722 3.535561 GCTCAAATCATCCGGAGAAAGA 58.464 45.455 11.34 5.69 0.00 2.52
712 727 1.502163 GCCGCTCAAATCATCCGGAG 61.502 60.000 11.34 2.05 41.34 4.63
771 786 2.214920 GGCACCCTACCCCCTATCG 61.215 68.421 0.00 0.00 0.00 2.92
909 925 7.004086 AGGTCCTGAATCACAATAGACAAAAA 58.996 34.615 0.00 0.00 0.00 1.94
941 957 0.528466 TAGATTCTGCCTTGCTCGCG 60.528 55.000 0.00 0.00 0.00 5.87
969 985 2.193248 CCGGAATCAGAAGGGGGC 59.807 66.667 0.00 0.00 0.00 5.80
970 986 2.193248 GCCGGAATCAGAAGGGGG 59.807 66.667 5.05 0.00 0.00 5.40
1097 1113 0.617820 GGACTTCTCAGGGGGTAGCA 60.618 60.000 0.00 0.00 0.00 3.49
1227 1243 2.728435 ATACGGCGACCAGGTTCCC 61.728 63.158 16.62 0.00 0.00 3.97
1246 1262 2.350498 CCCGACGTTTATGGTTGATGAC 59.650 50.000 0.00 0.00 0.00 3.06
1266 1282 1.134068 GTCTTGATTAGGCCAGGTCCC 60.134 57.143 5.01 0.00 0.00 4.46
1278 1294 2.357569 GCCCTGGGAAGATGTCTTGATT 60.358 50.000 19.27 0.00 36.11 2.57
1335 1351 1.685224 CAAAGCAGGTAGCCCCTCA 59.315 57.895 0.00 0.00 43.86 3.86
1620 1663 0.809241 CACTCTGCGAATCCTGAGGC 60.809 60.000 0.00 0.00 35.75 4.70
1854 1897 6.093219 AGTTCAGCAAGACACAAAGCATATAG 59.907 38.462 0.00 0.00 0.00 1.31
1866 1909 3.831333 AGAGAGATCAGTTCAGCAAGACA 59.169 43.478 0.00 0.00 0.00 3.41
1867 1910 4.175516 CAGAGAGATCAGTTCAGCAAGAC 58.824 47.826 0.00 0.00 0.00 3.01
1891 1936 1.877443 CTGGTAAACAGGAACAACCGG 59.123 52.381 0.00 0.00 43.70 5.28
1910 1955 5.964958 TTAGCTTAAGAATTGTTGCTGCT 57.035 34.783 6.67 11.52 33.05 4.24
1985 2037 4.892433 AGATGCTAAGCAAGTAGGCATAG 58.108 43.478 0.00 0.00 43.62 2.23
2077 2129 5.994668 GGCTAATTTGTTTCACCATTTCCAA 59.005 36.000 0.00 0.00 0.00 3.53
2119 2173 9.584008 AACTATAAACCGAGAGTATTCTATCCA 57.416 33.333 0.00 0.00 32.53 3.41
2141 2195 7.004555 TGAGCTTTTGGAATACAGAGAACTA 57.995 36.000 0.00 0.00 0.00 2.24
2142 2196 5.869579 TGAGCTTTTGGAATACAGAGAACT 58.130 37.500 0.00 0.00 0.00 3.01
2150 2206 5.886960 ACATGACTGAGCTTTTGGAATAC 57.113 39.130 0.00 0.00 0.00 1.89
2223 2281 4.561105 CCAGGACTGACTCACTAGAAAAC 58.439 47.826 0.00 0.00 0.00 2.43
2386 2714 3.196469 TCATAGTTCAGCCACAGGAAGAG 59.804 47.826 0.00 0.00 0.00 2.85
2444 2772 4.640201 GCACATTGACTATAAGGCCTCAAA 59.360 41.667 5.23 0.00 0.00 2.69
2653 2996 6.258230 CAGAATGCAACCAAGTGATTAGAA 57.742 37.500 0.00 0.00 0.00 2.10
2702 3045 8.109705 ACAACAAGCATACATGTCAAAATAGA 57.890 30.769 0.00 0.00 0.00 1.98
2706 3049 8.932945 TTAAACAACAAGCATACATGTCAAAA 57.067 26.923 0.00 0.00 0.00 2.44
2904 3248 3.938334 GACTCAGCTTCTTCCATTCCTTC 59.062 47.826 0.00 0.00 0.00 3.46
3224 3568 9.716507 ATGTACGAAATGCAAAGATTAATGTAC 57.283 29.630 0.00 0.00 0.00 2.90
3236 3580 7.428282 TCTTGAAAGTATGTACGAAATGCAA 57.572 32.000 0.00 0.00 0.00 4.08
3244 3588 7.757097 AGCTTACATCTTGAAAGTATGTACG 57.243 36.000 11.53 11.21 35.54 3.67
3273 3803 1.238439 GCACCAGCAAGTCAGCTAAA 58.762 50.000 0.00 0.00 44.54 1.85
3280 3810 2.908073 CGGTTGGCACCAGCAAGTC 61.908 63.158 5.85 0.00 44.53 3.01
3281 3811 2.906897 CGGTTGGCACCAGCAAGT 60.907 61.111 5.85 0.00 44.53 3.16
3286 3816 1.821216 AGATTAACGGTTGGCACCAG 58.179 50.000 3.07 0.00 44.53 4.00
3292 3822 6.964934 GTGCAATAAGTAAGATTAACGGTTGG 59.035 38.462 3.07 0.00 0.00 3.77
3312 3842 4.661222 TGGAACAGGAGATTTATGTGCAA 58.339 39.130 0.00 0.00 0.00 4.08
3338 3868 5.355596 CAGGTGCCATTTTTCACAACTAAA 58.644 37.500 0.00 0.00 35.04 1.85
3346 3876 1.068895 CACTGCAGGTGCCATTTTTCA 59.931 47.619 19.93 0.00 39.22 2.69
3375 3909 6.647334 TGCATGTCTCCTTAAATTCAACAA 57.353 33.333 0.00 0.00 0.00 2.83
3377 3911 7.092716 ACATTGCATGTCTCCTTAAATTCAAC 58.907 34.615 0.00 0.00 39.92 3.18
3378 3912 7.230849 ACATTGCATGTCTCCTTAAATTCAA 57.769 32.000 0.00 0.00 39.92 2.69
3380 3914 6.753744 GGAACATTGCATGTCTCCTTAAATTC 59.246 38.462 15.09 0.00 44.07 2.17
3381 3915 6.625740 CGGAACATTGCATGTCTCCTTAAATT 60.626 38.462 17.43 0.00 44.07 1.82
3383 3917 4.155826 CGGAACATTGCATGTCTCCTTAAA 59.844 41.667 17.43 0.00 44.07 1.52
3388 3922 1.667724 CTCGGAACATTGCATGTCTCC 59.332 52.381 0.00 4.30 44.07 3.71
3389 3923 2.350522 ACTCGGAACATTGCATGTCTC 58.649 47.619 0.00 0.00 44.07 3.36
3399 3933 0.036388 ATCACGGCAACTCGGAACAT 60.036 50.000 0.00 0.00 0.00 2.71
3404 3938 1.086696 ATTCAATCACGGCAACTCGG 58.913 50.000 0.00 0.00 0.00 4.63
3406 3941 4.882671 ATGTATTCAATCACGGCAACTC 57.117 40.909 0.00 0.00 0.00 3.01
3414 3949 9.941664 CAAAGAACAGGATATGTATTCAATCAC 57.058 33.333 0.00 0.00 43.00 3.06
3419 3954 7.112122 ACAGCAAAGAACAGGATATGTATTCA 58.888 34.615 0.00 0.00 43.00 2.57
3420 3955 7.559590 ACAGCAAAGAACAGGATATGTATTC 57.440 36.000 0.00 0.00 43.00 1.75
3421 3956 7.831193 AGAACAGCAAAGAACAGGATATGTATT 59.169 33.333 0.00 0.00 43.00 1.89
3424 3965 5.413833 CAGAACAGCAAAGAACAGGATATGT 59.586 40.000 0.00 0.00 46.97 2.29
3431 3972 3.873361 TCTGACAGAACAGCAAAGAACAG 59.127 43.478 1.64 0.00 37.75 3.16
3434 3975 4.699735 TGTTTCTGACAGAACAGCAAAGAA 59.300 37.500 17.52 0.00 33.26 2.52
3436 3977 4.621068 TGTTTCTGACAGAACAGCAAAG 57.379 40.909 17.52 0.00 33.26 2.77
3439 3980 4.198530 TGAATGTTTCTGACAGAACAGCA 58.801 39.130 17.52 15.80 42.62 4.41
3446 3987 6.564709 TCTTCCAATGAATGTTTCTGACAG 57.435 37.500 0.00 0.00 42.62 3.51
3450 3991 6.160684 TGCAATCTTCCAATGAATGTTTCTG 58.839 36.000 0.00 0.00 0.00 3.02
3472 4013 3.006323 TGTTACACCCCATGTTCATTTGC 59.994 43.478 0.00 0.00 43.19 3.68
3481 4023 2.159382 GGACAAGTGTTACACCCCATG 58.841 52.381 12.28 8.90 34.49 3.66
3485 4027 3.775261 TTAGGGACAAGTGTTACACCC 57.225 47.619 12.28 5.87 34.49 4.61
3493 4035 7.703058 ATAGGAAAACATTTAGGGACAAGTG 57.297 36.000 0.00 0.00 0.00 3.16
3516 4058 5.757320 CCTCGACATCTCTGCAAGATTTAAT 59.243 40.000 8.19 0.00 45.62 1.40
3520 4062 2.741228 GCCTCGACATCTCTGCAAGATT 60.741 50.000 8.19 2.71 45.62 2.40
3537 4079 1.576421 CTTGTTCCGCTGTTGCCTC 59.424 57.895 0.00 0.00 35.36 4.70
3558 4100 2.486472 ACCACTTCTGCCTCATCTTG 57.514 50.000 0.00 0.00 0.00 3.02
3850 4392 0.179006 GGAGATGGCCCATTCCACTC 60.179 60.000 15.79 9.83 39.25 3.51
3851 4393 0.920763 TGGAGATGGCCCATTCCACT 60.921 55.000 18.16 3.42 39.25 4.00
3870 4412 2.505982 CCAATCCTGGACGCGGAT 59.494 61.111 12.47 0.00 46.92 4.18
3871 4413 4.467084 GCCAATCCTGGACGCGGA 62.467 66.667 12.47 0.00 46.92 5.54
3889 4431 1.606885 TTACGGTAAGGGGCAGTCGG 61.607 60.000 0.00 0.00 0.00 4.79
3895 4437 0.979709 AGGGACTTACGGTAAGGGGC 60.980 60.000 26.67 16.96 40.08 5.80
3930 4472 6.129393 CACATTCCTCGTATTATTTTGCTCG 58.871 40.000 0.00 0.00 0.00 5.03
4205 4812 1.915141 CCAAAGGAGTGCTGGACAAT 58.085 50.000 1.24 0.00 31.38 2.71
4210 4817 0.251077 AAGAGCCAAAGGAGTGCTGG 60.251 55.000 0.00 0.00 34.99 4.85
4212 4819 3.728385 ATAAAGAGCCAAAGGAGTGCT 57.272 42.857 0.00 0.00 38.24 4.40
4213 4820 3.758554 TGAATAAAGAGCCAAAGGAGTGC 59.241 43.478 0.00 0.00 0.00 4.40
4222 4829 6.093495 CGTAAGATTGGTTGAATAAAGAGCCA 59.907 38.462 0.00 0.00 43.02 4.75
4241 4848 2.025605 TCCCTACTCCTCTTGCGTAAGA 60.026 50.000 15.41 15.41 40.53 2.10
4244 4851 1.684248 GGTCCCTACTCCTCTTGCGTA 60.684 57.143 0.00 0.00 0.00 4.42
4265 4872 2.743126 AGAAAACAAAACGTGACGGACA 59.257 40.909 10.66 0.00 0.00 4.02
4270 4877 7.441864 CAAAACCTAAGAAAACAAAACGTGAC 58.558 34.615 0.00 0.00 0.00 3.67
4271 4878 6.089685 GCAAAACCTAAGAAAACAAAACGTGA 59.910 34.615 0.00 0.00 0.00 4.35
4273 4880 6.160684 AGCAAAACCTAAGAAAACAAAACGT 58.839 32.000 0.00 0.00 0.00 3.99
4275 4882 8.251750 AGAAGCAAAACCTAAGAAAACAAAAC 57.748 30.769 0.00 0.00 0.00 2.43
4279 4886 6.680378 GCAGAGAAGCAAAACCTAAGAAAACA 60.680 38.462 0.00 0.00 0.00 2.83
4280 4887 5.687730 GCAGAGAAGCAAAACCTAAGAAAAC 59.312 40.000 0.00 0.00 0.00 2.43
4305 4912 1.365699 GTCGCCACCACGTCAATATT 58.634 50.000 0.00 0.00 0.00 1.28
4333 4940 1.518522 CGCCGAATAAGACGTCGTCG 61.519 60.000 19.11 19.95 37.67 5.12
4334 4941 1.795432 GCGCCGAATAAGACGTCGTC 61.795 60.000 17.70 17.70 34.76 4.20
4335 4942 1.870901 GCGCCGAATAAGACGTCGT 60.871 57.895 10.46 9.92 34.76 4.34
4336 4943 1.585521 AGCGCCGAATAAGACGTCG 60.586 57.895 10.46 0.00 35.35 5.12
4339 4946 1.798368 CGTCAGCGCCGAATAAGACG 61.798 60.000 2.29 9.19 42.00 4.18
4344 4951 2.622903 CTTCCCGTCAGCGCCGAATA 62.623 60.000 2.29 0.00 36.67 1.75
4356 4963 0.389025 CAAAGCAAAAGCCTTCCCGT 59.611 50.000 0.00 0.00 0.00 5.28
4357 4964 0.945743 GCAAAGCAAAAGCCTTCCCG 60.946 55.000 0.00 0.00 0.00 5.14
4372 4979 1.136695 CAACCAGAACAGCCTTGCAAA 59.863 47.619 0.00 0.00 0.00 3.68
4373 4980 0.746063 CAACCAGAACAGCCTTGCAA 59.254 50.000 0.00 0.00 0.00 4.08
4374 4981 1.108727 CCAACCAGAACAGCCTTGCA 61.109 55.000 0.00 0.00 0.00 4.08
4375 4982 1.662044 CCAACCAGAACAGCCTTGC 59.338 57.895 0.00 0.00 0.00 4.01
4376 4983 1.181098 CCCCAACCAGAACAGCCTTG 61.181 60.000 0.00 0.00 0.00 3.61
4377 4984 1.153756 CCCCAACCAGAACAGCCTT 59.846 57.895 0.00 0.00 0.00 4.35
4378 4985 2.084930 ACCCCAACCAGAACAGCCT 61.085 57.895 0.00 0.00 0.00 4.58
4379 4986 1.903404 CACCCCAACCAGAACAGCC 60.903 63.158 0.00 0.00 0.00 4.85
4380 4987 0.251341 ATCACCCCAACCAGAACAGC 60.251 55.000 0.00 0.00 0.00 4.40
4381 4988 1.538047 CATCACCCCAACCAGAACAG 58.462 55.000 0.00 0.00 0.00 3.16
4382 4989 0.539438 GCATCACCCCAACCAGAACA 60.539 55.000 0.00 0.00 0.00 3.18
4383 4990 0.251341 AGCATCACCCCAACCAGAAC 60.251 55.000 0.00 0.00 0.00 3.01
4384 4991 0.038166 GAGCATCACCCCAACCAGAA 59.962 55.000 0.00 0.00 33.17 3.02
4385 4992 1.685224 GAGCATCACCCCAACCAGA 59.315 57.895 0.00 0.00 33.17 3.86
4386 4993 1.379044 GGAGCATCACCCCAACCAG 60.379 63.158 0.00 0.00 36.25 4.00
4387 4994 1.724148 TTGGAGCATCACCCCAACCA 61.724 55.000 0.00 0.00 35.25 3.67
4388 4995 0.324645 ATTGGAGCATCACCCCAACC 60.325 55.000 0.00 0.00 42.08 3.77
4389 4996 1.106285 GATTGGAGCATCACCCCAAC 58.894 55.000 0.00 0.00 42.08 3.77
4390 4997 0.394216 CGATTGGAGCATCACCCCAA 60.394 55.000 0.00 0.00 43.25 4.12
4391 4998 1.224315 CGATTGGAGCATCACCCCA 59.776 57.895 0.00 0.00 36.25 4.96
4392 4999 0.109342 ATCGATTGGAGCATCACCCC 59.891 55.000 0.00 0.00 36.25 4.95
4393 5000 1.233019 CATCGATTGGAGCATCACCC 58.767 55.000 0.00 0.00 36.25 4.61
4404 5011 4.536364 AATCGTAAAGCACCATCGATTG 57.464 40.909 9.65 0.00 45.19 2.67
4406 5013 7.375834 TCTATAAATCGTAAAGCACCATCGAT 58.624 34.615 0.00 0.00 41.82 3.59
4407 5014 6.741109 TCTATAAATCGTAAAGCACCATCGA 58.259 36.000 0.00 0.00 35.14 3.59
4408 5015 7.542477 AGATCTATAAATCGTAAAGCACCATCG 59.458 37.037 0.00 0.00 0.00 3.84
4409 5016 8.764524 AGATCTATAAATCGTAAAGCACCATC 57.235 34.615 0.00 0.00 0.00 3.51
4410 5017 7.542477 CGAGATCTATAAATCGTAAAGCACCAT 59.458 37.037 0.00 0.00 0.00 3.55
4411 5018 6.861572 CGAGATCTATAAATCGTAAAGCACCA 59.138 38.462 0.00 0.00 0.00 4.17
4412 5019 6.862090 ACGAGATCTATAAATCGTAAAGCACC 59.138 38.462 0.00 0.00 45.76 5.01
4413 5020 7.854934 ACGAGATCTATAAATCGTAAAGCAC 57.145 36.000 0.00 0.00 45.76 4.40
4414 5021 8.867112 AAACGAGATCTATAAATCGTAAAGCA 57.133 30.769 5.94 0.00 46.80 3.91
4415 5022 8.965172 TGAAACGAGATCTATAAATCGTAAAGC 58.035 33.333 5.94 0.00 46.80 3.51
4417 5024 9.459640 CCTGAAACGAGATCTATAAATCGTAAA 57.540 33.333 5.94 0.00 46.80 2.01
4418 5025 8.080417 CCCTGAAACGAGATCTATAAATCGTAA 58.920 37.037 5.94 0.00 46.80 3.18
4419 5026 7.591165 CCCTGAAACGAGATCTATAAATCGTA 58.409 38.462 5.94 0.00 46.80 3.43
4421 5028 5.346281 GCCCTGAAACGAGATCTATAAATCG 59.654 44.000 0.00 0.00 40.86 3.34
4422 5029 5.639931 GGCCCTGAAACGAGATCTATAAATC 59.360 44.000 0.00 0.00 0.00 2.17
4423 5030 5.552178 GGCCCTGAAACGAGATCTATAAAT 58.448 41.667 0.00 0.00 0.00 1.40
4424 5031 4.500887 CGGCCCTGAAACGAGATCTATAAA 60.501 45.833 0.00 0.00 0.00 1.40
4425 5032 3.005472 CGGCCCTGAAACGAGATCTATAA 59.995 47.826 0.00 0.00 0.00 0.98
4426 5033 2.557056 CGGCCCTGAAACGAGATCTATA 59.443 50.000 0.00 0.00 0.00 1.31
4427 5034 1.341531 CGGCCCTGAAACGAGATCTAT 59.658 52.381 0.00 0.00 0.00 1.98
4428 5035 0.744874 CGGCCCTGAAACGAGATCTA 59.255 55.000 0.00 0.00 0.00 1.98
4429 5036 0.970937 TCGGCCCTGAAACGAGATCT 60.971 55.000 0.00 0.00 32.29 2.75
4430 5037 0.806492 GTCGGCCCTGAAACGAGATC 60.806 60.000 0.00 0.00 37.30 2.75
4431 5038 1.218316 GTCGGCCCTGAAACGAGAT 59.782 57.895 0.00 0.00 37.30 2.75
4432 5039 2.654877 GTCGGCCCTGAAACGAGA 59.345 61.111 0.00 0.00 37.30 4.04
4433 5040 2.558554 ATCGTCGGCCCTGAAACGAG 62.559 60.000 14.48 0.00 46.00 4.18
4434 5041 1.314534 TATCGTCGGCCCTGAAACGA 61.315 55.000 12.40 12.40 46.73 3.85
4435 5042 0.870307 CTATCGTCGGCCCTGAAACG 60.870 60.000 0.00 0.00 36.50 3.60
4436 5043 0.458669 TCTATCGTCGGCCCTGAAAC 59.541 55.000 0.00 0.00 0.00 2.78
4437 5044 1.187974 TTCTATCGTCGGCCCTGAAA 58.812 50.000 0.00 0.00 0.00 2.69
4438 5045 1.410004 ATTCTATCGTCGGCCCTGAA 58.590 50.000 0.00 0.00 0.00 3.02
4439 5046 1.068588 CAATTCTATCGTCGGCCCTGA 59.931 52.381 0.00 0.00 0.00 3.86
4440 5047 1.068588 TCAATTCTATCGTCGGCCCTG 59.931 52.381 0.00 0.00 0.00 4.45
4441 5048 1.068741 GTCAATTCTATCGTCGGCCCT 59.931 52.381 0.00 0.00 0.00 5.19
4442 5049 1.202486 TGTCAATTCTATCGTCGGCCC 60.202 52.381 0.00 0.00 0.00 5.80
4443 5050 2.218953 TGTCAATTCTATCGTCGGCC 57.781 50.000 0.00 0.00 0.00 6.13
4444 5051 3.444916 TCTTGTCAATTCTATCGTCGGC 58.555 45.455 0.00 0.00 0.00 5.54
4445 5052 5.340803 TCTTCTTGTCAATTCTATCGTCGG 58.659 41.667 0.00 0.00 0.00 4.79
4446 5053 6.258899 TCTCTTCTTGTCAATTCTATCGTCG 58.741 40.000 0.00 0.00 0.00 5.12
4447 5054 6.198216 GCTCTCTTCTTGTCAATTCTATCGTC 59.802 42.308 0.00 0.00 0.00 4.20
4448 5055 6.039616 GCTCTCTTCTTGTCAATTCTATCGT 58.960 40.000 0.00 0.00 0.00 3.73
4449 5056 6.019961 GTGCTCTCTTCTTGTCAATTCTATCG 60.020 42.308 0.00 0.00 0.00 2.92
4450 5057 6.815641 TGTGCTCTCTTCTTGTCAATTCTATC 59.184 38.462 0.00 0.00 0.00 2.08
4451 5058 6.705302 TGTGCTCTCTTCTTGTCAATTCTAT 58.295 36.000 0.00 0.00 0.00 1.98
4452 5059 6.015095 TCTGTGCTCTCTTCTTGTCAATTCTA 60.015 38.462 0.00 0.00 0.00 2.10
4453 5060 4.965814 TGTGCTCTCTTCTTGTCAATTCT 58.034 39.130 0.00 0.00 0.00 2.40
4454 5061 4.993584 TCTGTGCTCTCTTCTTGTCAATTC 59.006 41.667 0.00 0.00 0.00 2.17
4455 5062 4.965814 TCTGTGCTCTCTTCTTGTCAATT 58.034 39.130 0.00 0.00 0.00 2.32
4456 5063 4.613925 TCTGTGCTCTCTTCTTGTCAAT 57.386 40.909 0.00 0.00 0.00 2.57
4457 5064 4.375272 CTTCTGTGCTCTCTTCTTGTCAA 58.625 43.478 0.00 0.00 0.00 3.18
4458 5065 3.801638 GCTTCTGTGCTCTCTTCTTGTCA 60.802 47.826 0.00 0.00 0.00 3.58
4459 5066 2.736192 GCTTCTGTGCTCTCTTCTTGTC 59.264 50.000 0.00 0.00 0.00 3.18
4460 5067 2.103771 TGCTTCTGTGCTCTCTTCTTGT 59.896 45.455 0.00 0.00 0.00 3.16
4461 5068 2.737783 CTGCTTCTGTGCTCTCTTCTTG 59.262 50.000 0.00 0.00 0.00 3.02
4462 5069 2.289569 CCTGCTTCTGTGCTCTCTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
4463 5070 1.275856 CCTGCTTCTGTGCTCTCTTCT 59.724 52.381 0.00 0.00 0.00 2.85
4464 5071 1.675415 CCCTGCTTCTGTGCTCTCTTC 60.675 57.143 0.00 0.00 0.00 2.87
4465 5072 0.324285 CCCTGCTTCTGTGCTCTCTT 59.676 55.000 0.00 0.00 0.00 2.85
4466 5073 0.543883 TCCCTGCTTCTGTGCTCTCT 60.544 55.000 0.00 0.00 0.00 3.10
4467 5074 0.322975 TTCCCTGCTTCTGTGCTCTC 59.677 55.000 0.00 0.00 0.00 3.20
4468 5075 0.990374 ATTCCCTGCTTCTGTGCTCT 59.010 50.000 0.00 0.00 0.00 4.09
4469 5076 1.093159 CATTCCCTGCTTCTGTGCTC 58.907 55.000 0.00 0.00 0.00 4.26
4470 5077 0.323178 CCATTCCCTGCTTCTGTGCT 60.323 55.000 0.00 0.00 0.00 4.40
4471 5078 0.322816 TCCATTCCCTGCTTCTGTGC 60.323 55.000 0.00 0.00 0.00 4.57
4472 5079 1.457346 GTCCATTCCCTGCTTCTGTG 58.543 55.000 0.00 0.00 0.00 3.66
4473 5080 0.036010 CGTCCATTCCCTGCTTCTGT 60.036 55.000 0.00 0.00 0.00 3.41
4474 5081 0.250234 TCGTCCATTCCCTGCTTCTG 59.750 55.000 0.00 0.00 0.00 3.02
4475 5082 0.250513 GTCGTCCATTCCCTGCTTCT 59.749 55.000 0.00 0.00 0.00 2.85
4476 5083 0.744771 GGTCGTCCATTCCCTGCTTC 60.745 60.000 0.00 0.00 0.00 3.86
4477 5084 1.299976 GGTCGTCCATTCCCTGCTT 59.700 57.895 0.00 0.00 0.00 3.91
4478 5085 1.918293 TGGTCGTCCATTCCCTGCT 60.918 57.895 0.00 0.00 39.03 4.24
4479 5086 2.668632 TGGTCGTCCATTCCCTGC 59.331 61.111 0.00 0.00 39.03 4.85
4488 5095 1.342082 CGTCGTCACAATGGTCGTCC 61.342 60.000 0.00 0.00 0.00 4.79
4489 5096 1.941476 GCGTCGTCACAATGGTCGTC 61.941 60.000 0.00 0.00 0.00 4.20
4490 5097 2.019951 GCGTCGTCACAATGGTCGT 61.020 57.895 0.00 0.00 0.00 4.34
4491 5098 2.769617 GCGTCGTCACAATGGTCG 59.230 61.111 0.00 0.00 0.00 4.79
4492 5099 0.730155 TACGCGTCGTCACAATGGTC 60.730 55.000 18.63 0.00 41.54 4.02
4493 5100 1.005294 GTACGCGTCGTCACAATGGT 61.005 55.000 18.63 0.00 41.54 3.55
4494 5101 1.700029 GTACGCGTCGTCACAATGG 59.300 57.895 18.63 0.00 41.54 3.16
4495 5102 1.335836 CGTACGCGTCGTCACAATG 59.664 57.895 18.63 0.00 41.54 2.82
4496 5103 3.744949 CGTACGCGTCGTCACAAT 58.255 55.556 18.63 0.00 41.54 2.71
4508 5115 6.616286 GAGCTCTAGAGATCTCGTACGTACG 61.616 52.000 35.90 35.90 41.21 3.67
4509 5116 4.549458 AGCTCTAGAGATCTCGTACGTAC 58.451 47.826 24.24 15.90 34.09 3.67
4510 5117 4.797471 GAGCTCTAGAGATCTCGTACGTA 58.203 47.826 26.97 5.31 40.46 3.57
4511 5118 3.645884 GAGCTCTAGAGATCTCGTACGT 58.354 50.000 26.97 1.86 40.46 3.57
4517 5124 2.561478 ACCCGAGCTCTAGAGATCTC 57.439 55.000 29.80 21.73 41.38 2.75
4518 5125 4.650972 ATAACCCGAGCTCTAGAGATCT 57.349 45.455 29.80 17.03 41.38 2.75
4519 5126 5.493809 AGTATAACCCGAGCTCTAGAGATC 58.506 45.833 25.00 25.00 40.24 2.75
4520 5127 5.508280 AGTATAACCCGAGCTCTAGAGAT 57.492 43.478 24.24 18.22 0.00 2.75
4521 5128 4.978438 AGTATAACCCGAGCTCTAGAGA 57.022 45.455 24.24 0.00 0.00 3.10
4522 5129 4.216687 CCAAGTATAACCCGAGCTCTAGAG 59.783 50.000 15.85 15.85 0.00 2.43
4523 5130 4.142790 CCAAGTATAACCCGAGCTCTAGA 58.857 47.826 12.85 0.00 0.00 2.43
4524 5131 3.256136 CCCAAGTATAACCCGAGCTCTAG 59.744 52.174 12.85 5.19 0.00 2.43
4525 5132 3.228453 CCCAAGTATAACCCGAGCTCTA 58.772 50.000 12.85 0.00 0.00 2.43
4526 5133 2.040178 CCCAAGTATAACCCGAGCTCT 58.960 52.381 12.85 0.00 0.00 4.09
4527 5134 1.761198 ACCCAAGTATAACCCGAGCTC 59.239 52.381 2.73 2.73 0.00 4.09
4528 5135 1.875488 ACCCAAGTATAACCCGAGCT 58.125 50.000 0.00 0.00 0.00 4.09
4529 5136 2.558378 GAACCCAAGTATAACCCGAGC 58.442 52.381 0.00 0.00 0.00 5.03
4530 5137 2.817901 CGAACCCAAGTATAACCCGAG 58.182 52.381 0.00 0.00 0.00 4.63
4531 5138 1.134729 GCGAACCCAAGTATAACCCGA 60.135 52.381 0.00 0.00 0.00 5.14
4532 5139 1.134610 AGCGAACCCAAGTATAACCCG 60.135 52.381 0.00 0.00 0.00 5.28
4533 5140 2.558378 GAGCGAACCCAAGTATAACCC 58.442 52.381 0.00 0.00 0.00 4.11
4534 5141 2.558378 GGAGCGAACCCAAGTATAACC 58.442 52.381 0.00 0.00 0.00 2.85
4546 5153 4.144703 GAGGGGTCGGGAGCGAAC 62.145 72.222 0.00 0.00 0.00 3.95
4551 5158 4.862823 GGAGGGAGGGGTCGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
4560 5167 3.775654 GTGTCGCAGGGAGGGAGG 61.776 72.222 0.00 0.00 40.18 4.30
4561 5168 2.997315 TGTGTCGCAGGGAGGGAG 60.997 66.667 0.00 0.00 40.18 4.30
4562 5169 3.311110 GTGTGTCGCAGGGAGGGA 61.311 66.667 0.00 0.00 36.77 4.20
4563 5170 3.314331 AGTGTGTCGCAGGGAGGG 61.314 66.667 0.00 0.00 0.00 4.30
4564 5171 2.047844 CAGTGTGTCGCAGGGAGG 60.048 66.667 0.00 0.00 0.00 4.30
4565 5172 2.047844 CCAGTGTGTCGCAGGGAG 60.048 66.667 0.00 0.00 0.00 4.30
4566 5173 4.314440 GCCAGTGTGTCGCAGGGA 62.314 66.667 7.96 0.00 0.00 4.20
4569 5176 2.520465 TATGGGCCAGTGTGTCGCAG 62.520 60.000 13.78 0.00 0.00 5.18
4570 5177 2.588201 TATGGGCCAGTGTGTCGCA 61.588 57.895 13.78 0.00 0.00 5.10
4571 5178 2.106683 GTATGGGCCAGTGTGTCGC 61.107 63.158 13.78 0.00 0.00 5.19
4572 5179 1.449601 GGTATGGGCCAGTGTGTCG 60.450 63.158 13.78 0.00 0.00 4.35
4573 5180 1.449601 CGGTATGGGCCAGTGTGTC 60.450 63.158 13.78 0.00 0.00 3.67
4574 5181 2.668632 CGGTATGGGCCAGTGTGT 59.331 61.111 13.78 0.00 0.00 3.72
4575 5182 2.124736 CCGGTATGGGCCAGTGTG 60.125 66.667 13.78 1.66 0.00 3.82
4610 5217 4.436998 GAGTGAGGTGGCCGACGG 62.437 72.222 10.29 10.29 0.00 4.79
4611 5218 4.436998 GGAGTGAGGTGGCCGACG 62.437 72.222 0.00 0.00 0.00 5.12
4612 5219 2.997897 AGGAGTGAGGTGGCCGAC 60.998 66.667 0.00 0.00 0.00 4.79
4613 5220 2.680352 GAGGAGTGAGGTGGCCGA 60.680 66.667 0.00 0.00 0.00 5.54
4614 5221 3.775654 GGAGGAGTGAGGTGGCCG 61.776 72.222 0.00 0.00 0.00 6.13
4615 5222 2.284995 AGGAGGAGTGAGGTGGCC 60.285 66.667 0.00 0.00 0.00 5.36
4616 5223 2.985456 CAGGAGGAGTGAGGTGGC 59.015 66.667 0.00 0.00 0.00 5.01
4617 5224 1.915266 TGCAGGAGGAGTGAGGTGG 60.915 63.158 0.00 0.00 0.00 4.61
4618 5225 1.294780 GTGCAGGAGGAGTGAGGTG 59.705 63.158 0.00 0.00 0.00 4.00
4619 5226 1.915769 GGTGCAGGAGGAGTGAGGT 60.916 63.158 0.00 0.00 0.00 3.85
4620 5227 2.664081 GGGTGCAGGAGGAGTGAGG 61.664 68.421 0.00 0.00 0.00 3.86
4621 5228 1.611851 AGGGTGCAGGAGGAGTGAG 60.612 63.158 0.00 0.00 0.00 3.51
4622 5229 1.915266 CAGGGTGCAGGAGGAGTGA 60.915 63.158 0.00 0.00 0.00 3.41
4623 5230 2.667418 CAGGGTGCAGGAGGAGTG 59.333 66.667 0.00 0.00 0.00 3.51
4624 5231 3.325753 GCAGGGTGCAGGAGGAGT 61.326 66.667 0.00 0.00 44.26 3.85
4625 5232 4.463879 CGCAGGGTGCAGGAGGAG 62.464 72.222 0.00 0.00 45.36 3.69
4671 5278 4.379243 AACTCCCAGACCGCGCAG 62.379 66.667 8.75 0.00 0.00 5.18
4672 5279 4.373116 GAACTCCCAGACCGCGCA 62.373 66.667 8.75 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.