Multiple sequence alignment - TraesCS6D01G251700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G251700 | chr6D | 100.000 | 4477 | 0 | 0 | 1 | 4477 | 355853386 | 355857862 | 0.000000e+00 | 8268 |
1 | TraesCS6D01G251700 | chr6A | 93.678 | 3717 | 124 | 41 | 845 | 4477 | 498525555 | 498529244 | 0.000000e+00 | 5459 |
2 | TraesCS6D01G251700 | chr6A | 91.213 | 478 | 31 | 10 | 1 | 473 | 498336705 | 498337176 | 1.360000e-179 | 640 |
3 | TraesCS6D01G251700 | chr6A | 92.105 | 228 | 16 | 2 | 465 | 692 | 498381936 | 498382161 | 2.010000e-83 | 320 |
4 | TraesCS6D01G251700 | chr6B | 92.527 | 3827 | 149 | 58 | 750 | 4477 | 536811156 | 536814944 | 0.000000e+00 | 5356 |
5 | TraesCS6D01G251700 | chr6B | 88.383 | 439 | 32 | 6 | 270 | 700 | 536810749 | 536811176 | 1.110000e-140 | 510 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G251700 | chr6D | 355853386 | 355857862 | 4476 | False | 8268 | 8268 | 100.000 | 1 | 4477 | 1 | chr6D.!!$F1 | 4476 |
1 | TraesCS6D01G251700 | chr6A | 498525555 | 498529244 | 3689 | False | 5459 | 5459 | 93.678 | 845 | 4477 | 1 | chr6A.!!$F3 | 3632 |
2 | TraesCS6D01G251700 | chr6B | 536810749 | 536814944 | 4195 | False | 2933 | 5356 | 90.455 | 270 | 4477 | 2 | chr6B.!!$F1 | 4207 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
75 | 76 | 0.032813 | ATGGGTTGCAAGCATAGCCT | 60.033 | 50.0 | 28.22 | 3.05 | 0.00 | 4.58 | F |
721 | 729 | 0.039527 | CACACTGATGTCGACGTGGA | 60.040 | 55.0 | 16.54 | 0.00 | 36.72 | 4.02 | F |
1438 | 1464 | 0.035820 | TCGGCTACACCAATCCAACC | 60.036 | 55.0 | 0.00 | 0.00 | 39.03 | 3.77 | F |
2280 | 2308 | 0.623194 | TCATGGGCCGAGGAAATCAA | 59.377 | 50.0 | 0.00 | 0.00 | 0.00 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1402 | 1428 | 0.600255 | CGAGGCCGAACAAGAACAGT | 60.600 | 55.000 | 0.00 | 0.00 | 38.22 | 3.55 | R |
2195 | 2223 | 2.309136 | ATAAGCAAAGGCCAGTTGGT | 57.691 | 45.000 | 15.84 | 15.84 | 42.56 | 3.67 | R |
2637 | 2686 | 4.261322 | CCGTGCATGGGAAAGATAAATCTG | 60.261 | 45.833 | 17.90 | 0.00 | 37.19 | 2.90 | R |
4099 | 4212 | 1.393539 | AGATTGCGTGCGACAATGTAC | 59.606 | 47.619 | 14.97 | 0.00 | 37.85 | 2.90 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 4.708576 | TGGTACAGGGTGTGTTTATCAA | 57.291 | 40.909 | 0.00 | 0.00 | 40.94 | 2.57 |
23 | 24 | 4.391155 | TGGTACAGGGTGTGTTTATCAAC | 58.609 | 43.478 | 0.00 | 0.00 | 40.94 | 3.18 |
24 | 25 | 4.103469 | TGGTACAGGGTGTGTTTATCAACT | 59.897 | 41.667 | 0.00 | 0.00 | 40.94 | 3.16 |
25 | 26 | 4.694037 | GGTACAGGGTGTGTTTATCAACTC | 59.306 | 45.833 | 0.00 | 0.00 | 40.94 | 3.01 |
26 | 27 | 3.399330 | ACAGGGTGTGTTTATCAACTCG | 58.601 | 45.455 | 0.00 | 0.00 | 34.94 | 4.18 |
27 | 28 | 3.181458 | ACAGGGTGTGTTTATCAACTCGT | 60.181 | 43.478 | 0.00 | 0.00 | 34.94 | 4.18 |
28 | 29 | 3.186409 | CAGGGTGTGTTTATCAACTCGTG | 59.814 | 47.826 | 0.00 | 0.00 | 33.58 | 4.35 |
29 | 30 | 2.482721 | GGGTGTGTTTATCAACTCGTGG | 59.517 | 50.000 | 0.00 | 0.00 | 33.58 | 4.94 |
30 | 31 | 3.135994 | GGTGTGTTTATCAACTCGTGGT | 58.864 | 45.455 | 0.00 | 0.00 | 33.58 | 4.16 |
31 | 32 | 3.562557 | GGTGTGTTTATCAACTCGTGGTT | 59.437 | 43.478 | 0.00 | 0.00 | 38.93 | 3.67 |
32 | 33 | 4.751098 | GGTGTGTTTATCAACTCGTGGTTA | 59.249 | 41.667 | 0.00 | 0.00 | 36.23 | 2.85 |
33 | 34 | 5.333568 | GGTGTGTTTATCAACTCGTGGTTAC | 60.334 | 44.000 | 0.00 | 0.00 | 36.23 | 2.50 |
34 | 35 | 5.234757 | GTGTGTTTATCAACTCGTGGTTACA | 59.765 | 40.000 | 0.00 | 0.00 | 36.23 | 2.41 |
35 | 36 | 5.816258 | TGTGTTTATCAACTCGTGGTTACAA | 59.184 | 36.000 | 0.00 | 0.00 | 36.23 | 2.41 |
36 | 37 | 6.018588 | TGTGTTTATCAACTCGTGGTTACAAG | 60.019 | 38.462 | 0.00 | 0.00 | 36.23 | 3.16 |
37 | 38 | 6.201425 | GTGTTTATCAACTCGTGGTTACAAGA | 59.799 | 38.462 | 0.00 | 0.00 | 36.23 | 3.02 |
44 | 45 | 1.621814 | TCGTGGTTACAAGAGAAGGGG | 59.378 | 52.381 | 0.00 | 0.00 | 31.42 | 4.79 |
45 | 46 | 1.346722 | CGTGGTTACAAGAGAAGGGGT | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
46 | 47 | 2.612221 | CGTGGTTACAAGAGAAGGGGTC | 60.612 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
47 | 48 | 2.638363 | GTGGTTACAAGAGAAGGGGTCT | 59.362 | 50.000 | 0.00 | 0.00 | 40.25 | 3.85 |
58 | 59 | 4.026356 | AGAAGGGGTCTCTTTGTGAATG | 57.974 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
59 | 60 | 2.887151 | AGGGGTCTCTTTGTGAATGG | 57.113 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
60 | 61 | 1.355720 | AGGGGTCTCTTTGTGAATGGG | 59.644 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
61 | 62 | 1.075536 | GGGGTCTCTTTGTGAATGGGT | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
62 | 63 | 2.490902 | GGGGTCTCTTTGTGAATGGGTT | 60.491 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
63 | 64 | 2.558359 | GGGTCTCTTTGTGAATGGGTTG | 59.442 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
64 | 65 | 2.029918 | GGTCTCTTTGTGAATGGGTTGC | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
65 | 66 | 2.622942 | GTCTCTTTGTGAATGGGTTGCA | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
66 | 67 | 3.068024 | GTCTCTTTGTGAATGGGTTGCAA | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
67 | 68 | 3.318839 | TCTCTTTGTGAATGGGTTGCAAG | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
68 | 69 | 2.137523 | CTTTGTGAATGGGTTGCAAGC | 58.862 | 47.619 | 20.26 | 20.26 | 0.00 | 4.01 |
69 | 70 | 1.117994 | TTGTGAATGGGTTGCAAGCA | 58.882 | 45.000 | 28.22 | 15.59 | 0.00 | 3.91 |
70 | 71 | 1.340088 | TGTGAATGGGTTGCAAGCAT | 58.660 | 45.000 | 28.22 | 17.02 | 0.00 | 3.79 |
71 | 72 | 2.523245 | TGTGAATGGGTTGCAAGCATA | 58.477 | 42.857 | 28.22 | 17.50 | 0.00 | 3.14 |
72 | 73 | 2.492881 | TGTGAATGGGTTGCAAGCATAG | 59.507 | 45.455 | 28.22 | 0.00 | 0.00 | 2.23 |
73 | 74 | 1.477700 | TGAATGGGTTGCAAGCATAGC | 59.522 | 47.619 | 28.22 | 15.42 | 0.00 | 2.97 |
74 | 75 | 0.826062 | AATGGGTTGCAAGCATAGCC | 59.174 | 50.000 | 28.22 | 13.46 | 0.00 | 3.93 |
75 | 76 | 0.032813 | ATGGGTTGCAAGCATAGCCT | 60.033 | 50.000 | 28.22 | 3.05 | 0.00 | 4.58 |
76 | 77 | 0.623194 | TGGGTTGCAAGCATAGCCTA | 59.377 | 50.000 | 28.22 | 7.21 | 0.00 | 3.93 |
77 | 78 | 1.025041 | GGGTTGCAAGCATAGCCTAC | 58.975 | 55.000 | 28.22 | 6.26 | 0.00 | 3.18 |
78 | 79 | 1.408822 | GGGTTGCAAGCATAGCCTACT | 60.409 | 52.381 | 28.22 | 0.00 | 0.00 | 2.57 |
79 | 80 | 1.943340 | GGTTGCAAGCATAGCCTACTC | 59.057 | 52.381 | 23.18 | 0.00 | 0.00 | 2.59 |
80 | 81 | 1.594862 | GTTGCAAGCATAGCCTACTCG | 59.405 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
81 | 82 | 1.111277 | TGCAAGCATAGCCTACTCGA | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
82 | 83 | 1.067669 | TGCAAGCATAGCCTACTCGAG | 59.932 | 52.381 | 11.84 | 11.84 | 0.00 | 4.04 |
83 | 84 | 1.338337 | GCAAGCATAGCCTACTCGAGA | 59.662 | 52.381 | 21.68 | 1.61 | 0.00 | 4.04 |
84 | 85 | 2.606795 | GCAAGCATAGCCTACTCGAGAG | 60.607 | 54.545 | 21.68 | 11.86 | 0.00 | 3.20 |
85 | 86 | 2.881513 | CAAGCATAGCCTACTCGAGAGA | 59.118 | 50.000 | 21.68 | 5.48 | 39.12 | 3.10 |
86 | 87 | 3.433306 | AGCATAGCCTACTCGAGAGAT | 57.567 | 47.619 | 21.68 | 8.62 | 40.84 | 2.75 |
87 | 88 | 3.761897 | AGCATAGCCTACTCGAGAGATT | 58.238 | 45.455 | 21.68 | 0.00 | 40.84 | 2.40 |
88 | 89 | 4.912586 | AGCATAGCCTACTCGAGAGATTA | 58.087 | 43.478 | 21.68 | 5.25 | 40.84 | 1.75 |
89 | 90 | 5.317808 | AGCATAGCCTACTCGAGAGATTAA | 58.682 | 41.667 | 21.68 | 0.32 | 40.84 | 1.40 |
90 | 91 | 5.770663 | AGCATAGCCTACTCGAGAGATTAAA | 59.229 | 40.000 | 21.68 | 0.00 | 40.84 | 1.52 |
91 | 92 | 6.435904 | AGCATAGCCTACTCGAGAGATTAAAT | 59.564 | 38.462 | 21.68 | 1.34 | 40.84 | 1.40 |
92 | 93 | 6.529829 | GCATAGCCTACTCGAGAGATTAAATG | 59.470 | 42.308 | 21.68 | 14.11 | 40.84 | 2.32 |
93 | 94 | 5.461032 | AGCCTACTCGAGAGATTAAATGG | 57.539 | 43.478 | 21.68 | 7.98 | 40.84 | 3.16 |
94 | 95 | 5.141182 | AGCCTACTCGAGAGATTAAATGGA | 58.859 | 41.667 | 21.68 | 0.00 | 40.84 | 3.41 |
95 | 96 | 5.242838 | AGCCTACTCGAGAGATTAAATGGAG | 59.757 | 44.000 | 21.68 | 0.00 | 40.84 | 3.86 |
96 | 97 | 5.465935 | CCTACTCGAGAGATTAAATGGAGC | 58.534 | 45.833 | 21.68 | 0.00 | 40.84 | 4.70 |
97 | 98 | 5.010112 | CCTACTCGAGAGATTAAATGGAGCA | 59.990 | 44.000 | 21.68 | 0.00 | 40.84 | 4.26 |
98 | 99 | 5.543507 | ACTCGAGAGATTAAATGGAGCAT | 57.456 | 39.130 | 21.68 | 0.00 | 40.84 | 3.79 |
99 | 100 | 6.656632 | ACTCGAGAGATTAAATGGAGCATA | 57.343 | 37.500 | 21.68 | 0.00 | 40.84 | 3.14 |
100 | 101 | 6.686630 | ACTCGAGAGATTAAATGGAGCATAG | 58.313 | 40.000 | 21.68 | 0.00 | 40.84 | 2.23 |
101 | 102 | 6.266558 | ACTCGAGAGATTAAATGGAGCATAGT | 59.733 | 38.462 | 21.68 | 0.00 | 40.84 | 2.12 |
102 | 103 | 6.682746 | TCGAGAGATTAAATGGAGCATAGTC | 58.317 | 40.000 | 0.00 | 0.00 | 33.31 | 2.59 |
103 | 104 | 6.265422 | TCGAGAGATTAAATGGAGCATAGTCA | 59.735 | 38.462 | 0.00 | 0.00 | 33.31 | 3.41 |
104 | 105 | 6.585702 | CGAGAGATTAAATGGAGCATAGTCAG | 59.414 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
105 | 106 | 7.372260 | AGAGATTAAATGGAGCATAGTCAGT | 57.628 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
106 | 107 | 7.800092 | AGAGATTAAATGGAGCATAGTCAGTT | 58.200 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
107 | 108 | 8.270744 | AGAGATTAAATGGAGCATAGTCAGTTT | 58.729 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
108 | 109 | 8.218338 | AGATTAAATGGAGCATAGTCAGTTTG | 57.782 | 34.615 | 0.00 | 0.00 | 0.00 | 2.93 |
109 | 110 | 6.757897 | TTAAATGGAGCATAGTCAGTTTGG | 57.242 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
110 | 111 | 2.113860 | TGGAGCATAGTCAGTTTGGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
111 | 112 | 1.340017 | TGGAGCATAGTCAGTTTGGCC | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
112 | 113 | 1.383523 | GAGCATAGTCAGTTTGGCCC | 58.616 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
113 | 114 | 0.698238 | AGCATAGTCAGTTTGGCCCA | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
114 | 115 | 1.285962 | AGCATAGTCAGTTTGGCCCAT | 59.714 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
115 | 116 | 2.102578 | GCATAGTCAGTTTGGCCCATT | 58.897 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
116 | 117 | 3.053693 | AGCATAGTCAGTTTGGCCCATTA | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
117 | 118 | 3.699038 | GCATAGTCAGTTTGGCCCATTAA | 59.301 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
118 | 119 | 4.440112 | GCATAGTCAGTTTGGCCCATTAAC | 60.440 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
119 | 120 | 3.237268 | AGTCAGTTTGGCCCATTAACA | 57.763 | 42.857 | 0.00 | 0.00 | 0.00 | 2.41 |
120 | 121 | 2.890945 | AGTCAGTTTGGCCCATTAACAC | 59.109 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
121 | 122 | 2.625790 | GTCAGTTTGGCCCATTAACACA | 59.374 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
122 | 123 | 3.258123 | GTCAGTTTGGCCCATTAACACAT | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
123 | 124 | 3.257873 | TCAGTTTGGCCCATTAACACATG | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
124 | 125 | 2.028203 | AGTTTGGCCCATTAACACATGC | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
125 | 126 | 1.637338 | TTGGCCCATTAACACATGCA | 58.363 | 45.000 | 0.00 | 0.00 | 0.00 | 3.96 |
126 | 127 | 0.894141 | TGGCCCATTAACACATGCAC | 59.106 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
127 | 128 | 0.894141 | GGCCCATTAACACATGCACA | 59.106 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
128 | 129 | 1.274728 | GGCCCATTAACACATGCACAA | 59.725 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
129 | 130 | 2.093553 | GGCCCATTAACACATGCACAAT | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
130 | 131 | 3.598299 | GCCCATTAACACATGCACAATT | 58.402 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
131 | 132 | 4.002316 | GCCCATTAACACATGCACAATTT | 58.998 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
132 | 133 | 4.093261 | GCCCATTAACACATGCACAATTTC | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
133 | 134 | 5.481105 | CCCATTAACACATGCACAATTTCT | 58.519 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
134 | 135 | 5.933463 | CCCATTAACACATGCACAATTTCTT | 59.067 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
135 | 136 | 6.427547 | CCCATTAACACATGCACAATTTCTTT | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
136 | 137 | 7.041235 | CCCATTAACACATGCACAATTTCTTTT | 60.041 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
137 | 138 | 8.344098 | CCATTAACACATGCACAATTTCTTTTT | 58.656 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
138 | 139 | 9.372541 | CATTAACACATGCACAATTTCTTTTTC | 57.627 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
139 | 140 | 5.989551 | ACACATGCACAATTTCTTTTTCC | 57.010 | 34.783 | 0.00 | 0.00 | 0.00 | 3.13 |
140 | 141 | 5.673514 | ACACATGCACAATTTCTTTTTCCT | 58.326 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
141 | 142 | 5.524646 | ACACATGCACAATTTCTTTTTCCTG | 59.475 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
142 | 143 | 5.754406 | CACATGCACAATTTCTTTTTCCTGA | 59.246 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
143 | 144 | 6.425721 | CACATGCACAATTTCTTTTTCCTGAT | 59.574 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
144 | 145 | 7.599621 | CACATGCACAATTTCTTTTTCCTGATA | 59.400 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
145 | 146 | 8.149647 | ACATGCACAATTTCTTTTTCCTGATAA | 58.850 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
146 | 147 | 9.158233 | CATGCACAATTTCTTTTTCCTGATAAT | 57.842 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
147 | 148 | 9.729281 | ATGCACAATTTCTTTTTCCTGATAATT | 57.271 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
148 | 149 | 9.206870 | TGCACAATTTCTTTTTCCTGATAATTC | 57.793 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
149 | 150 | 8.375465 | GCACAATTTCTTTTTCCTGATAATTCG | 58.625 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
150 | 151 | 8.375465 | CACAATTTCTTTTTCCTGATAATTCGC | 58.625 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
151 | 152 | 8.306761 | ACAATTTCTTTTTCCTGATAATTCGCT | 58.693 | 29.630 | 0.00 | 0.00 | 0.00 | 4.93 |
152 | 153 | 9.143631 | CAATTTCTTTTTCCTGATAATTCGCTT | 57.856 | 29.630 | 0.00 | 0.00 | 0.00 | 4.68 |
153 | 154 | 8.693542 | ATTTCTTTTTCCTGATAATTCGCTTG | 57.306 | 30.769 | 0.00 | 0.00 | 0.00 | 4.01 |
154 | 155 | 7.447374 | TTCTTTTTCCTGATAATTCGCTTGA | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
155 | 156 | 7.630242 | TCTTTTTCCTGATAATTCGCTTGAT | 57.370 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
156 | 157 | 8.731275 | TCTTTTTCCTGATAATTCGCTTGATA | 57.269 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
157 | 158 | 9.342308 | TCTTTTTCCTGATAATTCGCTTGATAT | 57.658 | 29.630 | 0.00 | 0.00 | 0.00 | 1.63 |
229 | 230 | 6.869421 | AAAAGTATATTTTGTGCGCATGTC | 57.131 | 33.333 | 15.91 | 0.09 | 0.00 | 3.06 |
230 | 231 | 5.559427 | AAGTATATTTTGTGCGCATGTCA | 57.441 | 34.783 | 15.91 | 3.64 | 0.00 | 3.58 |
231 | 232 | 5.756195 | AGTATATTTTGTGCGCATGTCAT | 57.244 | 34.783 | 15.91 | 6.86 | 0.00 | 3.06 |
232 | 233 | 6.135290 | AGTATATTTTGTGCGCATGTCATT | 57.865 | 33.333 | 15.91 | 0.00 | 0.00 | 2.57 |
233 | 234 | 7.258022 | AGTATATTTTGTGCGCATGTCATTA | 57.742 | 32.000 | 15.91 | 2.18 | 0.00 | 1.90 |
234 | 235 | 7.355017 | AGTATATTTTGTGCGCATGTCATTAG | 58.645 | 34.615 | 15.91 | 0.00 | 0.00 | 1.73 |
235 | 236 | 4.700268 | ATTTTGTGCGCATGTCATTAGA | 57.300 | 36.364 | 15.91 | 0.00 | 0.00 | 2.10 |
236 | 237 | 4.495911 | TTTTGTGCGCATGTCATTAGAA | 57.504 | 36.364 | 15.91 | 0.00 | 0.00 | 2.10 |
237 | 238 | 3.469899 | TTGTGCGCATGTCATTAGAAC | 57.530 | 42.857 | 15.91 | 0.00 | 0.00 | 3.01 |
238 | 239 | 2.421619 | TGTGCGCATGTCATTAGAACA | 58.578 | 42.857 | 15.91 | 0.00 | 0.00 | 3.18 |
239 | 240 | 3.009026 | TGTGCGCATGTCATTAGAACAT | 58.991 | 40.909 | 15.91 | 0.00 | 0.00 | 2.71 |
240 | 241 | 3.439825 | TGTGCGCATGTCATTAGAACATT | 59.560 | 39.130 | 15.91 | 0.00 | 0.00 | 2.71 |
241 | 242 | 3.787634 | GTGCGCATGTCATTAGAACATTG | 59.212 | 43.478 | 15.91 | 0.00 | 0.00 | 2.82 |
242 | 243 | 3.439825 | TGCGCATGTCATTAGAACATTGT | 59.560 | 39.130 | 5.66 | 0.00 | 0.00 | 2.71 |
243 | 244 | 4.082841 | TGCGCATGTCATTAGAACATTGTT | 60.083 | 37.500 | 5.66 | 0.63 | 0.00 | 2.83 |
244 | 245 | 4.496895 | GCGCATGTCATTAGAACATTGTTC | 59.503 | 41.667 | 19.64 | 19.64 | 0.00 | 3.18 |
245 | 246 | 5.630061 | CGCATGTCATTAGAACATTGTTCA | 58.370 | 37.500 | 26.73 | 11.32 | 0.00 | 3.18 |
246 | 247 | 6.260377 | CGCATGTCATTAGAACATTGTTCAT | 58.740 | 36.000 | 26.73 | 16.05 | 0.00 | 2.57 |
247 | 248 | 6.195798 | CGCATGTCATTAGAACATTGTTCATG | 59.804 | 38.462 | 26.73 | 21.69 | 39.07 | 3.07 |
431 | 438 | 1.673920 | GTGGTCACGCCTCTTGAAAAA | 59.326 | 47.619 | 0.00 | 0.00 | 38.35 | 1.94 |
439 | 446 | 5.937540 | TCACGCCTCTTGAAAAATCTTCATA | 59.062 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
653 | 660 | 9.553418 | AAAAATGCTTGTGTATTTGACAAAAAC | 57.447 | 25.926 | 4.41 | 4.97 | 40.66 | 2.43 |
693 | 701 | 8.512966 | TTTTCTAAAAACAAAGAAAATGGGGG | 57.487 | 30.769 | 6.23 | 0.00 | 43.34 | 5.40 |
694 | 702 | 7.439108 | TTCTAAAAACAAAGAAAATGGGGGA | 57.561 | 32.000 | 0.00 | 0.00 | 0.00 | 4.81 |
695 | 703 | 7.439108 | TCTAAAAACAAAGAAAATGGGGGAA | 57.561 | 32.000 | 0.00 | 0.00 | 0.00 | 3.97 |
696 | 704 | 7.862675 | TCTAAAAACAAAGAAAATGGGGGAAA | 58.137 | 30.769 | 0.00 | 0.00 | 0.00 | 3.13 |
697 | 705 | 8.329502 | TCTAAAAACAAAGAAAATGGGGGAAAA | 58.670 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
698 | 706 | 7.782897 | AAAAACAAAGAAAATGGGGGAAAAA | 57.217 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
718 | 726 | 3.474007 | GACACACTGATGTCGACGT | 57.526 | 52.632 | 10.75 | 10.75 | 39.69 | 4.34 |
719 | 727 | 1.053048 | GACACACTGATGTCGACGTG | 58.947 | 55.000 | 16.54 | 16.58 | 39.69 | 4.49 |
720 | 728 | 0.318699 | ACACACTGATGTCGACGTGG | 60.319 | 55.000 | 16.54 | 10.16 | 36.72 | 4.94 |
721 | 729 | 0.039527 | CACACTGATGTCGACGTGGA | 60.040 | 55.000 | 16.54 | 0.00 | 36.72 | 4.02 |
722 | 730 | 0.671796 | ACACTGATGTCGACGTGGAA | 59.328 | 50.000 | 16.54 | 0.00 | 31.55 | 3.53 |
723 | 731 | 1.067974 | ACACTGATGTCGACGTGGAAA | 59.932 | 47.619 | 16.54 | 0.00 | 31.55 | 3.13 |
724 | 732 | 1.721389 | CACTGATGTCGACGTGGAAAG | 59.279 | 52.381 | 16.54 | 9.55 | 0.00 | 2.62 |
725 | 733 | 0.716108 | CTGATGTCGACGTGGAAAGC | 59.284 | 55.000 | 16.54 | 0.00 | 0.00 | 3.51 |
726 | 734 | 0.669318 | TGATGTCGACGTGGAAAGCC | 60.669 | 55.000 | 16.54 | 0.00 | 0.00 | 4.35 |
727 | 735 | 0.389948 | GATGTCGACGTGGAAAGCCT | 60.390 | 55.000 | 16.54 | 0.00 | 34.31 | 4.58 |
728 | 736 | 0.892755 | ATGTCGACGTGGAAAGCCTA | 59.107 | 50.000 | 10.06 | 0.00 | 34.31 | 3.93 |
729 | 737 | 0.675083 | TGTCGACGTGGAAAGCCTAA | 59.325 | 50.000 | 11.62 | 0.00 | 34.31 | 2.69 |
730 | 738 | 1.066136 | GTCGACGTGGAAAGCCTAAC | 58.934 | 55.000 | 0.40 | 0.00 | 34.31 | 2.34 |
731 | 739 | 0.675083 | TCGACGTGGAAAGCCTAACA | 59.325 | 50.000 | 0.00 | 0.00 | 34.31 | 2.41 |
732 | 740 | 1.068895 | TCGACGTGGAAAGCCTAACAA | 59.931 | 47.619 | 0.00 | 0.00 | 34.31 | 2.83 |
733 | 741 | 1.459592 | CGACGTGGAAAGCCTAACAAG | 59.540 | 52.381 | 0.00 | 0.00 | 34.31 | 3.16 |
734 | 742 | 1.804748 | GACGTGGAAAGCCTAACAAGG | 59.195 | 52.381 | 0.00 | 0.00 | 34.31 | 3.61 |
735 | 743 | 1.165270 | CGTGGAAAGCCTAACAAGGG | 58.835 | 55.000 | 0.00 | 0.00 | 34.31 | 3.95 |
736 | 744 | 1.271163 | CGTGGAAAGCCTAACAAGGGA | 60.271 | 52.381 | 0.00 | 0.00 | 34.31 | 4.20 |
737 | 745 | 2.618045 | CGTGGAAAGCCTAACAAGGGAT | 60.618 | 50.000 | 0.00 | 0.00 | 34.31 | 3.85 |
738 | 746 | 3.017442 | GTGGAAAGCCTAACAAGGGATC | 58.983 | 50.000 | 0.00 | 0.00 | 34.31 | 3.36 |
739 | 747 | 2.289565 | GGAAAGCCTAACAAGGGATCG | 58.710 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
740 | 748 | 2.355818 | GGAAAGCCTAACAAGGGATCGT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
741 | 749 | 2.693267 | AAGCCTAACAAGGGATCGTC | 57.307 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
742 | 750 | 1.867363 | AGCCTAACAAGGGATCGTCT | 58.133 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
743 | 751 | 3.028094 | AGCCTAACAAGGGATCGTCTA | 57.972 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
744 | 752 | 2.694109 | AGCCTAACAAGGGATCGTCTAC | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
745 | 753 | 2.429610 | GCCTAACAAGGGATCGTCTACA | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
746 | 754 | 3.491104 | GCCTAACAAGGGATCGTCTACAG | 60.491 | 52.174 | 0.00 | 0.00 | 0.00 | 2.74 |
747 | 755 | 2.674796 | AACAAGGGATCGTCTACAGC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
748 | 756 | 1.557099 | ACAAGGGATCGTCTACAGCA | 58.443 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
749 | 757 | 1.899814 | ACAAGGGATCGTCTACAGCAA | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
750 | 758 | 2.301870 | ACAAGGGATCGTCTACAGCAAA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
751 | 759 | 3.244422 | ACAAGGGATCGTCTACAGCAAAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
752 | 760 | 3.252974 | AGGGATCGTCTACAGCAAAAG | 57.747 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
753 | 761 | 2.832129 | AGGGATCGTCTACAGCAAAAGA | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
754 | 762 | 3.260884 | AGGGATCGTCTACAGCAAAAGAA | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
755 | 763 | 4.000988 | GGGATCGTCTACAGCAAAAGAAA | 58.999 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
756 | 764 | 4.454504 | GGGATCGTCTACAGCAAAAGAAAA | 59.545 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
757 | 765 | 5.048991 | GGGATCGTCTACAGCAAAAGAAAAA | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
758 | 766 | 6.080406 | GGATCGTCTACAGCAAAAGAAAAAG | 58.920 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
759 | 767 | 5.418310 | TCGTCTACAGCAAAAGAAAAAGG | 57.582 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
770 | 778 | 9.489393 | CAGCAAAAGAAAAAGGTGAATAAAAAC | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
771 | 779 | 9.448438 | AGCAAAAGAAAAAGGTGAATAAAAACT | 57.552 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
800 | 808 | 3.786101 | CGATCCACTCGGTTGCTG | 58.214 | 61.111 | 0.00 | 0.00 | 43.82 | 4.41 |
801 | 809 | 2.456119 | CGATCCACTCGGTTGCTGC | 61.456 | 63.158 | 0.00 | 0.00 | 43.82 | 5.25 |
810 | 818 | 2.100916 | ACTCGGTTGCTGCTATACGAAT | 59.899 | 45.455 | 12.62 | 3.31 | 0.00 | 3.34 |
818 | 826 | 2.662156 | GCTGCTATACGAATAAGACGGC | 59.338 | 50.000 | 0.00 | 0.00 | 34.93 | 5.68 |
841 | 849 | 6.033966 | GCCCGTTAGAACTATTTCCAAATTG | 58.966 | 40.000 | 0.00 | 0.00 | 31.28 | 2.32 |
909 | 934 | 2.334977 | GGGAAAACCAGTGGGGAAAAT | 58.665 | 47.619 | 15.21 | 0.00 | 41.15 | 1.82 |
1368 | 1394 | 1.153958 | CGTGCTCTGATGCGTCTGA | 60.154 | 57.895 | 14.06 | 14.06 | 35.36 | 3.27 |
1402 | 1428 | 1.176527 | GCATCTTTGGCAACCAGCTA | 58.823 | 50.000 | 0.00 | 0.00 | 44.79 | 3.32 |
1435 | 1461 | 1.904771 | CCTCGGCTACACCAATCCA | 59.095 | 57.895 | 0.00 | 0.00 | 39.03 | 3.41 |
1438 | 1464 | 0.035820 | TCGGCTACACCAATCCAACC | 60.036 | 55.000 | 0.00 | 0.00 | 39.03 | 3.77 |
1527 | 1553 | 8.993121 | GTCAGTCTCACTCAATCTTGAAAAATA | 58.007 | 33.333 | 0.00 | 0.00 | 36.64 | 1.40 |
1815 | 1841 | 3.270877 | GAAAAGTGGCATATCGGAGTGT | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
1894 | 1920 | 1.537202 | GATTTTCAGGCTGTTGTCGCT | 59.463 | 47.619 | 15.27 | 0.00 | 0.00 | 4.93 |
2195 | 2223 | 3.117550 | AGGCCCATATTTATGCTGTGTGA | 60.118 | 43.478 | 0.00 | 0.00 | 32.40 | 3.58 |
2214 | 2242 | 2.171003 | GACCAACTGGCCTTTGCTTAT | 58.829 | 47.619 | 3.32 | 0.00 | 39.32 | 1.73 |
2245 | 2273 | 6.454795 | ACATGGTATGTTGTTTGGTGAATTC | 58.545 | 36.000 | 0.00 | 0.00 | 41.63 | 2.17 |
2280 | 2308 | 0.623194 | TCATGGGCCGAGGAAATCAA | 59.377 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2289 | 2317 | 4.415735 | GCCGAGGAAATCAAACTTCATTC | 58.584 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
2337 | 2365 | 4.833390 | AGAAGGAGATCACCCTTTTAACG | 58.167 | 43.478 | 17.21 | 0.00 | 43.59 | 3.18 |
2500 | 2549 | 3.746940 | GGTGAAGTACCCTTGCAGTTTA | 58.253 | 45.455 | 0.00 | 0.00 | 44.15 | 2.01 |
2658 | 2707 | 5.357878 | TGTCAGATTTATCTTTCCCATGCAC | 59.642 | 40.000 | 0.00 | 0.00 | 34.22 | 4.57 |
2704 | 2753 | 3.293337 | TGTATGTAGTACTGTGGCGGAT | 58.707 | 45.455 | 5.39 | 0.00 | 34.27 | 4.18 |
2787 | 2836 | 5.312895 | ACGCATGCCACCATAAATATTCTA | 58.687 | 37.500 | 13.15 | 0.00 | 0.00 | 2.10 |
2855 | 2904 | 8.718102 | TTCATCTGCTCTTAATACTGGTTTAC | 57.282 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
3121 | 3171 | 5.308014 | TGTAGGATATGCACATTGATGTCC | 58.692 | 41.667 | 0.00 | 0.00 | 39.39 | 4.02 |
3255 | 3313 | 9.147732 | TCTTTTGATCTGAGGTATAATCTGCTA | 57.852 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
3461 | 3519 | 3.562176 | CCCTTTCTAGGCTGTGGAATGTT | 60.562 | 47.826 | 0.00 | 0.00 | 40.50 | 2.71 |
3487 | 3545 | 5.471116 | CACATGAATCTTGAGAAGTTGGTGA | 59.529 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3503 | 3561 | 4.558226 | TGGTGATCTATGCAACTTCTGT | 57.442 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3543 | 3609 | 9.791820 | TGATGAGTAAAAATACAGAATGCATTG | 57.208 | 29.630 | 18.59 | 6.76 | 42.53 | 2.82 |
3579 | 3645 | 1.003349 | AGTGCTGCAGAGAAGATTGCT | 59.997 | 47.619 | 20.43 | 0.00 | 40.87 | 3.91 |
3598 | 3664 | 9.842775 | AGATTGCTCTGAAGATTGTTAATGATA | 57.157 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
3673 | 3756 | 5.182760 | AGACAAAAGAGAAGCCATGTTCATC | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3721 | 3806 | 6.127101 | TGAGGATGCTGAATTGATGATTCTT | 58.873 | 36.000 | 0.00 | 0.00 | 43.74 | 2.52 |
3722 | 3807 | 6.262496 | TGAGGATGCTGAATTGATGATTCTTC | 59.738 | 38.462 | 0.00 | 0.00 | 43.74 | 2.87 |
3723 | 3808 | 6.366340 | AGGATGCTGAATTGATGATTCTTCT | 58.634 | 36.000 | 0.00 | 0.00 | 43.74 | 2.85 |
3724 | 3809 | 6.263392 | AGGATGCTGAATTGATGATTCTTCTG | 59.737 | 38.462 | 0.00 | 0.00 | 43.74 | 3.02 |
3728 | 3813 | 8.515695 | TGCTGAATTGATGATTCTTCTGTAAT | 57.484 | 30.769 | 1.76 | 0.00 | 43.74 | 1.89 |
3752 | 3837 | 1.264749 | TGCAAGGTAGCTCCACCGAT | 61.265 | 55.000 | 0.00 | 0.00 | 43.84 | 4.18 |
3846 | 3955 | 9.267084 | ACTTTGAGAGAAATGAAACTCTCTTAC | 57.733 | 33.333 | 19.84 | 2.38 | 46.66 | 2.34 |
3858 | 3971 | 4.506886 | ACTCTCTTACCTGTGAAGTTCG | 57.493 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
3899 | 4012 | 7.806487 | TGTTTCGTACTACTACTCAATGAGTTG | 59.194 | 37.037 | 21.83 | 20.88 | 40.28 | 3.16 |
3920 | 4033 | 0.445436 | CAATTCTGCAGTCTGGACGC | 59.555 | 55.000 | 14.67 | 9.37 | 36.20 | 5.19 |
3930 | 4043 | 2.052237 | CTGGACGCGTGTTGCAAC | 60.052 | 61.111 | 20.70 | 22.83 | 46.97 | 4.17 |
3937 | 4050 | 3.040099 | GACGCGTGTTGCAACTATTTTT | 58.960 | 40.909 | 28.61 | 10.07 | 46.97 | 1.94 |
3947 | 4060 | 4.870363 | TGCAACTATTTTTCAGGCTGTTC | 58.130 | 39.130 | 15.27 | 0.00 | 0.00 | 3.18 |
3953 | 4066 | 5.985530 | ACTATTTTTCAGGCTGTTCTTTTGC | 59.014 | 36.000 | 15.27 | 0.00 | 0.00 | 3.68 |
3960 | 4073 | 1.203065 | GCTGTTCTTTTGCACTGCAC | 58.797 | 50.000 | 2.26 | 0.00 | 39.45 | 4.57 |
3961 | 4074 | 1.843992 | CTGTTCTTTTGCACTGCACC | 58.156 | 50.000 | 2.26 | 0.00 | 38.71 | 5.01 |
3962 | 4075 | 1.406539 | CTGTTCTTTTGCACTGCACCT | 59.593 | 47.619 | 2.26 | 0.00 | 38.71 | 4.00 |
3963 | 4076 | 1.134753 | TGTTCTTTTGCACTGCACCTG | 59.865 | 47.619 | 2.26 | 0.00 | 38.71 | 4.00 |
3964 | 4077 | 0.102844 | TTCTTTTGCACTGCACCTGC | 59.897 | 50.000 | 2.26 | 4.87 | 38.71 | 4.85 |
3989 | 4102 | 6.422776 | AGTATGCTTTTCACCAATAGTTCG | 57.577 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
3996 | 4109 | 4.742438 | TTCACCAATAGTTCGTTCTTGC | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 4.01 |
4087 | 4200 | 0.613260 | TACCCATGCACCACTCTGTC | 59.387 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4099 | 4212 | 3.695060 | ACCACTCTGTCGGTCTACTATTG | 59.305 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
4105 | 4218 | 6.602406 | ACTCTGTCGGTCTACTATTGTACATT | 59.398 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
4108 | 4221 | 6.558009 | TGTCGGTCTACTATTGTACATTGTC | 58.442 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4148 | 4261 | 0.816018 | AAACATCGGACGTGTTGGCA | 60.816 | 50.000 | 0.00 | 0.00 | 39.57 | 4.92 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 4.648651 | AGTTGATAAACACACCCTGTACC | 58.351 | 43.478 | 0.00 | 0.00 | 30.51 | 3.34 |
3 | 4 | 4.387862 | CGAGTTGATAAACACACCCTGTAC | 59.612 | 45.833 | 0.00 | 0.00 | 30.51 | 2.90 |
5 | 6 | 3.181458 | ACGAGTTGATAAACACACCCTGT | 60.181 | 43.478 | 0.00 | 0.00 | 32.89 | 4.00 |
6 | 7 | 3.186409 | CACGAGTTGATAAACACACCCTG | 59.814 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
7 | 8 | 3.399330 | CACGAGTTGATAAACACACCCT | 58.601 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
8 | 9 | 2.482721 | CCACGAGTTGATAAACACACCC | 59.517 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
9 | 10 | 3.135994 | ACCACGAGTTGATAAACACACC | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
10 | 11 | 4.806342 | AACCACGAGTTGATAAACACAC | 57.194 | 40.909 | 0.00 | 0.00 | 37.29 | 3.82 |
11 | 12 | 5.358090 | TGTAACCACGAGTTGATAAACACA | 58.642 | 37.500 | 0.00 | 0.00 | 39.67 | 3.72 |
12 | 13 | 5.910637 | TGTAACCACGAGTTGATAAACAC | 57.089 | 39.130 | 0.00 | 0.00 | 39.67 | 3.32 |
13 | 14 | 6.282167 | TCTTGTAACCACGAGTTGATAAACA | 58.718 | 36.000 | 0.00 | 0.30 | 39.67 | 2.83 |
14 | 15 | 6.643770 | TCTCTTGTAACCACGAGTTGATAAAC | 59.356 | 38.462 | 5.96 | 0.00 | 39.67 | 2.01 |
15 | 16 | 6.751157 | TCTCTTGTAACCACGAGTTGATAAA | 58.249 | 36.000 | 5.96 | 0.00 | 39.67 | 1.40 |
16 | 17 | 6.335471 | TCTCTTGTAACCACGAGTTGATAA | 57.665 | 37.500 | 5.96 | 0.00 | 39.67 | 1.75 |
17 | 18 | 5.970317 | TCTCTTGTAACCACGAGTTGATA | 57.030 | 39.130 | 5.96 | 0.00 | 39.67 | 2.15 |
18 | 19 | 4.866508 | TCTCTTGTAACCACGAGTTGAT | 57.133 | 40.909 | 5.96 | 0.00 | 39.67 | 2.57 |
19 | 20 | 4.500887 | CCTTCTCTTGTAACCACGAGTTGA | 60.501 | 45.833 | 5.96 | 0.00 | 39.67 | 3.18 |
20 | 21 | 3.741344 | CCTTCTCTTGTAACCACGAGTTG | 59.259 | 47.826 | 5.96 | 0.00 | 39.67 | 3.16 |
21 | 22 | 3.244112 | CCCTTCTCTTGTAACCACGAGTT | 60.244 | 47.826 | 0.00 | 0.00 | 42.83 | 3.01 |
22 | 23 | 2.299297 | CCCTTCTCTTGTAACCACGAGT | 59.701 | 50.000 | 0.00 | 0.00 | 37.98 | 4.18 |
23 | 24 | 2.353803 | CCCCTTCTCTTGTAACCACGAG | 60.354 | 54.545 | 0.00 | 0.00 | 38.09 | 4.18 |
24 | 25 | 1.621814 | CCCCTTCTCTTGTAACCACGA | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
25 | 26 | 1.346722 | ACCCCTTCTCTTGTAACCACG | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
26 | 27 | 2.638363 | AGACCCCTTCTCTTGTAACCAC | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
27 | 28 | 2.904434 | GAGACCCCTTCTCTTGTAACCA | 59.096 | 50.000 | 0.00 | 0.00 | 46.68 | 3.67 |
28 | 29 | 3.613494 | GAGACCCCTTCTCTTGTAACC | 57.387 | 52.381 | 0.00 | 0.00 | 46.68 | 2.85 |
37 | 38 | 3.245052 | CCATTCACAAAGAGACCCCTTCT | 60.245 | 47.826 | 0.00 | 0.00 | 37.23 | 2.85 |
38 | 39 | 3.084786 | CCATTCACAAAGAGACCCCTTC | 58.915 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
39 | 40 | 2.225117 | CCCATTCACAAAGAGACCCCTT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
40 | 41 | 1.355720 | CCCATTCACAAAGAGACCCCT | 59.644 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
41 | 42 | 1.075536 | ACCCATTCACAAAGAGACCCC | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
42 | 43 | 2.558359 | CAACCCATTCACAAAGAGACCC | 59.442 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
43 | 44 | 2.029918 | GCAACCCATTCACAAAGAGACC | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
44 | 45 | 2.622942 | TGCAACCCATTCACAAAGAGAC | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
45 | 46 | 2.942804 | TGCAACCCATTCACAAAGAGA | 58.057 | 42.857 | 0.00 | 0.00 | 0.00 | 3.10 |
46 | 47 | 3.645884 | CTTGCAACCCATTCACAAAGAG | 58.354 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
47 | 48 | 2.224018 | GCTTGCAACCCATTCACAAAGA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
48 | 49 | 2.137523 | GCTTGCAACCCATTCACAAAG | 58.862 | 47.619 | 0.00 | 0.00 | 0.00 | 2.77 |
49 | 50 | 1.483827 | TGCTTGCAACCCATTCACAAA | 59.516 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
50 | 51 | 1.117994 | TGCTTGCAACCCATTCACAA | 58.882 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
51 | 52 | 1.340088 | ATGCTTGCAACCCATTCACA | 58.660 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
52 | 53 | 2.736400 | GCTATGCTTGCAACCCATTCAC | 60.736 | 50.000 | 11.76 | 1.61 | 0.00 | 3.18 |
53 | 54 | 1.477700 | GCTATGCTTGCAACCCATTCA | 59.522 | 47.619 | 11.76 | 0.00 | 0.00 | 2.57 |
54 | 55 | 1.202452 | GGCTATGCTTGCAACCCATTC | 60.202 | 52.381 | 11.76 | 6.15 | 0.00 | 2.67 |
55 | 56 | 0.826062 | GGCTATGCTTGCAACCCATT | 59.174 | 50.000 | 11.76 | 0.20 | 0.00 | 3.16 |
56 | 57 | 0.032813 | AGGCTATGCTTGCAACCCAT | 60.033 | 50.000 | 11.37 | 11.37 | 0.00 | 4.00 |
57 | 58 | 0.623194 | TAGGCTATGCTTGCAACCCA | 59.377 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
58 | 59 | 1.025041 | GTAGGCTATGCTTGCAACCC | 58.975 | 55.000 | 0.00 | 0.76 | 0.00 | 4.11 |
59 | 60 | 1.943340 | GAGTAGGCTATGCTTGCAACC | 59.057 | 52.381 | 0.00 | 2.17 | 0.00 | 3.77 |
60 | 61 | 1.594862 | CGAGTAGGCTATGCTTGCAAC | 59.405 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
61 | 62 | 1.480545 | TCGAGTAGGCTATGCTTGCAA | 59.519 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
62 | 63 | 1.067669 | CTCGAGTAGGCTATGCTTGCA | 59.932 | 52.381 | 3.62 | 0.00 | 0.00 | 4.08 |
63 | 64 | 1.338337 | TCTCGAGTAGGCTATGCTTGC | 59.662 | 52.381 | 13.13 | 0.00 | 0.00 | 4.01 |
64 | 65 | 2.881513 | TCTCTCGAGTAGGCTATGCTTG | 59.118 | 50.000 | 13.13 | 0.00 | 0.00 | 4.01 |
65 | 66 | 3.216187 | TCTCTCGAGTAGGCTATGCTT | 57.784 | 47.619 | 13.13 | 0.00 | 0.00 | 3.91 |
66 | 67 | 2.940994 | TCTCTCGAGTAGGCTATGCT | 57.059 | 50.000 | 13.13 | 0.00 | 0.00 | 3.79 |
67 | 68 | 5.630661 | TTAATCTCTCGAGTAGGCTATGC | 57.369 | 43.478 | 13.13 | 0.00 | 0.00 | 3.14 |
68 | 69 | 7.032580 | CCATTTAATCTCTCGAGTAGGCTATG | 58.967 | 42.308 | 13.13 | 9.15 | 0.00 | 2.23 |
69 | 70 | 6.948886 | TCCATTTAATCTCTCGAGTAGGCTAT | 59.051 | 38.462 | 13.13 | 0.00 | 0.00 | 2.97 |
70 | 71 | 6.304624 | TCCATTTAATCTCTCGAGTAGGCTA | 58.695 | 40.000 | 13.13 | 0.00 | 0.00 | 3.93 |
71 | 72 | 5.141182 | TCCATTTAATCTCTCGAGTAGGCT | 58.859 | 41.667 | 13.13 | 0.00 | 0.00 | 4.58 |
72 | 73 | 5.455056 | TCCATTTAATCTCTCGAGTAGGC | 57.545 | 43.478 | 13.13 | 0.00 | 0.00 | 3.93 |
73 | 74 | 5.010112 | TGCTCCATTTAATCTCTCGAGTAGG | 59.990 | 44.000 | 13.13 | 4.50 | 0.00 | 3.18 |
74 | 75 | 6.078202 | TGCTCCATTTAATCTCTCGAGTAG | 57.922 | 41.667 | 13.13 | 8.80 | 0.00 | 2.57 |
75 | 76 | 6.656632 | ATGCTCCATTTAATCTCTCGAGTA | 57.343 | 37.500 | 13.13 | 2.27 | 0.00 | 2.59 |
76 | 77 | 5.543507 | ATGCTCCATTTAATCTCTCGAGT | 57.456 | 39.130 | 13.13 | 0.00 | 0.00 | 4.18 |
77 | 78 | 6.686630 | ACTATGCTCCATTTAATCTCTCGAG | 58.313 | 40.000 | 5.93 | 5.93 | 0.00 | 4.04 |
78 | 79 | 6.265422 | TGACTATGCTCCATTTAATCTCTCGA | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
79 | 80 | 6.450545 | TGACTATGCTCCATTTAATCTCTCG | 58.549 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
80 | 81 | 7.441017 | ACTGACTATGCTCCATTTAATCTCTC | 58.559 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
81 | 82 | 7.372260 | ACTGACTATGCTCCATTTAATCTCT | 57.628 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
82 | 83 | 8.341173 | CAAACTGACTATGCTCCATTTAATCTC | 58.659 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
83 | 84 | 7.284034 | CCAAACTGACTATGCTCCATTTAATCT | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
84 | 85 | 7.420800 | CCAAACTGACTATGCTCCATTTAATC | 58.579 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
85 | 86 | 6.183360 | GCCAAACTGACTATGCTCCATTTAAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
86 | 87 | 5.125417 | GCCAAACTGACTATGCTCCATTTAA | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
87 | 88 | 4.640201 | GCCAAACTGACTATGCTCCATTTA | 59.360 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
88 | 89 | 3.445096 | GCCAAACTGACTATGCTCCATTT | 59.555 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
89 | 90 | 3.019564 | GCCAAACTGACTATGCTCCATT | 58.980 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
90 | 91 | 2.648059 | GCCAAACTGACTATGCTCCAT | 58.352 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
91 | 92 | 1.340017 | GGCCAAACTGACTATGCTCCA | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
92 | 93 | 1.383523 | GGCCAAACTGACTATGCTCC | 58.616 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
93 | 94 | 1.340017 | TGGGCCAAACTGACTATGCTC | 60.340 | 52.381 | 2.13 | 0.00 | 0.00 | 4.26 |
94 | 95 | 0.698238 | TGGGCCAAACTGACTATGCT | 59.302 | 50.000 | 2.13 | 0.00 | 0.00 | 3.79 |
95 | 96 | 1.767759 | ATGGGCCAAACTGACTATGC | 58.232 | 50.000 | 11.89 | 0.00 | 0.00 | 3.14 |
96 | 97 | 4.704540 | TGTTAATGGGCCAAACTGACTATG | 59.295 | 41.667 | 11.89 | 0.00 | 0.00 | 2.23 |
97 | 98 | 4.705023 | GTGTTAATGGGCCAAACTGACTAT | 59.295 | 41.667 | 11.89 | 0.00 | 0.00 | 2.12 |
98 | 99 | 4.076394 | GTGTTAATGGGCCAAACTGACTA | 58.924 | 43.478 | 11.89 | 0.00 | 0.00 | 2.59 |
99 | 100 | 2.890945 | GTGTTAATGGGCCAAACTGACT | 59.109 | 45.455 | 11.89 | 0.00 | 0.00 | 3.41 |
100 | 101 | 2.625790 | TGTGTTAATGGGCCAAACTGAC | 59.374 | 45.455 | 11.89 | 7.43 | 0.00 | 3.51 |
101 | 102 | 2.950781 | TGTGTTAATGGGCCAAACTGA | 58.049 | 42.857 | 11.89 | 0.00 | 0.00 | 3.41 |
102 | 103 | 3.587923 | CATGTGTTAATGGGCCAAACTG | 58.412 | 45.455 | 11.89 | 2.32 | 0.00 | 3.16 |
103 | 104 | 2.028203 | GCATGTGTTAATGGGCCAAACT | 60.028 | 45.455 | 11.89 | 0.00 | 0.00 | 2.66 |
104 | 105 | 2.289320 | TGCATGTGTTAATGGGCCAAAC | 60.289 | 45.455 | 11.89 | 12.65 | 0.00 | 2.93 |
105 | 106 | 1.973515 | TGCATGTGTTAATGGGCCAAA | 59.026 | 42.857 | 11.89 | 0.00 | 0.00 | 3.28 |
106 | 107 | 1.274728 | GTGCATGTGTTAATGGGCCAA | 59.725 | 47.619 | 11.89 | 0.00 | 0.00 | 4.52 |
107 | 108 | 0.894141 | GTGCATGTGTTAATGGGCCA | 59.106 | 50.000 | 9.61 | 9.61 | 0.00 | 5.36 |
108 | 109 | 0.894141 | TGTGCATGTGTTAATGGGCC | 59.106 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
109 | 110 | 2.739885 | TTGTGCATGTGTTAATGGGC | 57.260 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
110 | 111 | 5.481105 | AGAAATTGTGCATGTGTTAATGGG | 58.519 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
111 | 112 | 7.424227 | AAAGAAATTGTGCATGTGTTAATGG | 57.576 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
112 | 113 | 9.372541 | GAAAAAGAAATTGTGCATGTGTTAATG | 57.627 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
113 | 114 | 8.558700 | GGAAAAAGAAATTGTGCATGTGTTAAT | 58.441 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
114 | 115 | 7.768120 | AGGAAAAAGAAATTGTGCATGTGTTAA | 59.232 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
115 | 116 | 7.224362 | CAGGAAAAAGAAATTGTGCATGTGTTA | 59.776 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
116 | 117 | 6.037391 | CAGGAAAAAGAAATTGTGCATGTGTT | 59.963 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
117 | 118 | 5.524646 | CAGGAAAAAGAAATTGTGCATGTGT | 59.475 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
118 | 119 | 5.754406 | TCAGGAAAAAGAAATTGTGCATGTG | 59.246 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
119 | 120 | 5.916318 | TCAGGAAAAAGAAATTGTGCATGT | 58.084 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
120 | 121 | 8.537049 | TTATCAGGAAAAAGAAATTGTGCATG | 57.463 | 30.769 | 0.00 | 0.00 | 0.00 | 4.06 |
121 | 122 | 9.729281 | AATTATCAGGAAAAAGAAATTGTGCAT | 57.271 | 25.926 | 0.00 | 0.00 | 0.00 | 3.96 |
122 | 123 | 9.206870 | GAATTATCAGGAAAAAGAAATTGTGCA | 57.793 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
123 | 124 | 8.375465 | CGAATTATCAGGAAAAAGAAATTGTGC | 58.625 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
124 | 125 | 8.375465 | GCGAATTATCAGGAAAAAGAAATTGTG | 58.625 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
125 | 126 | 8.306761 | AGCGAATTATCAGGAAAAAGAAATTGT | 58.693 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
126 | 127 | 8.693542 | AGCGAATTATCAGGAAAAAGAAATTG | 57.306 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
127 | 128 | 9.143631 | CAAGCGAATTATCAGGAAAAAGAAATT | 57.856 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
128 | 129 | 8.522830 | TCAAGCGAATTATCAGGAAAAAGAAAT | 58.477 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
129 | 130 | 7.881142 | TCAAGCGAATTATCAGGAAAAAGAAA | 58.119 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
130 | 131 | 7.447374 | TCAAGCGAATTATCAGGAAAAAGAA | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
131 | 132 | 7.630242 | ATCAAGCGAATTATCAGGAAAAAGA | 57.370 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
205 | 206 | 6.865726 | TGACATGCGCACAAAATATACTTTTT | 59.134 | 30.769 | 14.90 | 0.00 | 0.00 | 1.94 |
206 | 207 | 6.385843 | TGACATGCGCACAAAATATACTTTT | 58.614 | 32.000 | 14.90 | 0.00 | 0.00 | 2.27 |
207 | 208 | 5.948588 | TGACATGCGCACAAAATATACTTT | 58.051 | 33.333 | 14.90 | 0.00 | 0.00 | 2.66 |
208 | 209 | 5.559427 | TGACATGCGCACAAAATATACTT | 57.441 | 34.783 | 14.90 | 0.00 | 0.00 | 2.24 |
209 | 210 | 5.756195 | ATGACATGCGCACAAAATATACT | 57.244 | 34.783 | 14.90 | 0.00 | 0.00 | 2.12 |
210 | 211 | 7.351981 | TCTAATGACATGCGCACAAAATATAC | 58.648 | 34.615 | 14.90 | 0.00 | 0.00 | 1.47 |
211 | 212 | 7.489574 | TCTAATGACATGCGCACAAAATATA | 57.510 | 32.000 | 14.90 | 0.00 | 0.00 | 0.86 |
212 | 213 | 6.375945 | TCTAATGACATGCGCACAAAATAT | 57.624 | 33.333 | 14.90 | 0.00 | 0.00 | 1.28 |
213 | 214 | 5.809719 | TCTAATGACATGCGCACAAAATA | 57.190 | 34.783 | 14.90 | 1.00 | 0.00 | 1.40 |
214 | 215 | 4.700268 | TCTAATGACATGCGCACAAAAT | 57.300 | 36.364 | 14.90 | 1.20 | 0.00 | 1.82 |
215 | 216 | 4.225984 | GTTCTAATGACATGCGCACAAAA | 58.774 | 39.130 | 14.90 | 0.00 | 0.00 | 2.44 |
216 | 217 | 3.251972 | TGTTCTAATGACATGCGCACAAA | 59.748 | 39.130 | 14.90 | 0.00 | 0.00 | 2.83 |
217 | 218 | 2.810852 | TGTTCTAATGACATGCGCACAA | 59.189 | 40.909 | 14.90 | 0.00 | 0.00 | 3.33 |
218 | 219 | 2.421619 | TGTTCTAATGACATGCGCACA | 58.578 | 42.857 | 14.90 | 7.02 | 0.00 | 4.57 |
219 | 220 | 3.680642 | ATGTTCTAATGACATGCGCAC | 57.319 | 42.857 | 14.90 | 0.00 | 0.00 | 5.34 |
220 | 221 | 3.439825 | ACAATGTTCTAATGACATGCGCA | 59.560 | 39.130 | 14.96 | 14.96 | 0.00 | 6.09 |
221 | 222 | 4.019919 | ACAATGTTCTAATGACATGCGC | 57.980 | 40.909 | 0.00 | 0.00 | 0.00 | 6.09 |
222 | 223 | 5.630061 | TGAACAATGTTCTAATGACATGCG | 58.370 | 37.500 | 24.30 | 0.00 | 0.00 | 4.73 |
223 | 224 | 7.445900 | CATGAACAATGTTCTAATGACATGC | 57.554 | 36.000 | 24.30 | 0.00 | 31.83 | 4.06 |
306 | 307 | 7.279758 | TGAACAAGTTTTCCTTTAATTGCTTGG | 59.720 | 33.333 | 0.00 | 0.00 | 37.12 | 3.61 |
349 | 356 | 9.777297 | ACTAAACACTATTCCAAAATTGCATTT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.32 |
350 | 357 | 9.423061 | GACTAAACACTATTCCAAAATTGCATT | 57.577 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
414 | 421 | 4.024048 | TGAAGATTTTTCAAGAGGCGTGAC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
415 | 422 | 4.133820 | TGAAGATTTTTCAAGAGGCGTGA | 58.866 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
416 | 423 | 4.488126 | TGAAGATTTTTCAAGAGGCGTG | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 5.34 |
417 | 424 | 5.705441 | TGTATGAAGATTTTTCAAGAGGCGT | 59.295 | 36.000 | 0.00 | 0.00 | 31.55 | 5.68 |
418 | 425 | 6.182039 | TGTATGAAGATTTTTCAAGAGGCG | 57.818 | 37.500 | 0.00 | 0.00 | 31.55 | 5.52 |
419 | 426 | 8.992835 | AATTGTATGAAGATTTTTCAAGAGGC | 57.007 | 30.769 | 0.00 | 0.00 | 31.55 | 4.70 |
439 | 446 | 5.493133 | TGCGTAAACACTCTTCAAATTGT | 57.507 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
451 | 458 | 9.946418 | GGACATTTTAAATAAATGCGTAAACAC | 57.054 | 29.630 | 9.48 | 0.00 | 40.35 | 3.32 |
497 | 504 | 5.923204 | TGGGCATTTTTAAAAGTGTGTGAT | 58.077 | 33.333 | 20.48 | 0.24 | 0.00 | 3.06 |
502 | 509 | 7.061566 | ACTACATGGGCATTTTTAAAAGTGT | 57.938 | 32.000 | 20.48 | 11.43 | 0.00 | 3.55 |
503 | 510 | 7.151308 | TGACTACATGGGCATTTTTAAAAGTG | 58.849 | 34.615 | 16.69 | 16.69 | 0.00 | 3.16 |
505 | 512 | 8.776376 | ATTGACTACATGGGCATTTTTAAAAG | 57.224 | 30.769 | 0.14 | 0.00 | 0.00 | 2.27 |
508 | 515 | 7.473735 | TGATTGACTACATGGGCATTTTTAA | 57.526 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
517 | 524 | 5.473162 | TGAACACTTTGATTGACTACATGGG | 59.527 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
608 | 615 | 9.726034 | GCATTTTTAATACGTGAAACTCATTTG | 57.274 | 29.630 | 0.00 | 0.00 | 31.75 | 2.32 |
612 | 619 | 8.132362 | ACAAGCATTTTTAATACGTGAAACTCA | 58.868 | 29.630 | 0.00 | 0.00 | 31.75 | 3.41 |
614 | 621 | 7.918562 | ACACAAGCATTTTTAATACGTGAAACT | 59.081 | 29.630 | 0.00 | 0.00 | 31.75 | 2.66 |
619 | 626 | 9.936108 | CAAATACACAAGCATTTTTAATACGTG | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 4.49 |
695 | 703 | 3.245284 | CGTCGACATCAGTGTGTCTTTTT | 59.755 | 43.478 | 17.16 | 0.00 | 44.89 | 1.94 |
696 | 704 | 2.794910 | CGTCGACATCAGTGTGTCTTTT | 59.205 | 45.455 | 17.16 | 0.00 | 44.89 | 2.27 |
697 | 705 | 2.223735 | ACGTCGACATCAGTGTGTCTTT | 60.224 | 45.455 | 17.16 | 3.60 | 44.89 | 2.52 |
698 | 706 | 1.337071 | ACGTCGACATCAGTGTGTCTT | 59.663 | 47.619 | 17.16 | 3.84 | 44.89 | 3.01 |
699 | 707 | 0.952280 | ACGTCGACATCAGTGTGTCT | 59.048 | 50.000 | 17.16 | 3.36 | 44.89 | 3.41 |
700 | 708 | 1.053048 | CACGTCGACATCAGTGTGTC | 58.947 | 55.000 | 17.16 | 12.93 | 43.90 | 3.67 |
701 | 709 | 0.318699 | CCACGTCGACATCAGTGTGT | 60.319 | 55.000 | 17.16 | 0.00 | 39.09 | 3.72 |
702 | 710 | 0.039527 | TCCACGTCGACATCAGTGTG | 60.040 | 55.000 | 17.16 | 13.48 | 39.09 | 3.82 |
703 | 711 | 0.671796 | TTCCACGTCGACATCAGTGT | 59.328 | 50.000 | 17.16 | 0.58 | 42.49 | 3.55 |
704 | 712 | 1.721389 | CTTTCCACGTCGACATCAGTG | 59.279 | 52.381 | 17.16 | 14.55 | 0.00 | 3.66 |
705 | 713 | 1.935300 | GCTTTCCACGTCGACATCAGT | 60.935 | 52.381 | 17.16 | 1.80 | 0.00 | 3.41 |
706 | 714 | 0.716108 | GCTTTCCACGTCGACATCAG | 59.284 | 55.000 | 17.16 | 1.08 | 0.00 | 2.90 |
707 | 715 | 0.669318 | GGCTTTCCACGTCGACATCA | 60.669 | 55.000 | 17.16 | 0.00 | 0.00 | 3.07 |
708 | 716 | 0.389948 | AGGCTTTCCACGTCGACATC | 60.390 | 55.000 | 17.16 | 0.00 | 33.74 | 3.06 |
709 | 717 | 0.892755 | TAGGCTTTCCACGTCGACAT | 59.107 | 50.000 | 17.16 | 0.00 | 33.74 | 3.06 |
710 | 718 | 0.675083 | TTAGGCTTTCCACGTCGACA | 59.325 | 50.000 | 17.16 | 0.00 | 33.74 | 4.35 |
711 | 719 | 1.066136 | GTTAGGCTTTCCACGTCGAC | 58.934 | 55.000 | 5.18 | 5.18 | 33.74 | 4.20 |
712 | 720 | 0.675083 | TGTTAGGCTTTCCACGTCGA | 59.325 | 50.000 | 0.00 | 0.00 | 33.74 | 4.20 |
713 | 721 | 1.459592 | CTTGTTAGGCTTTCCACGTCG | 59.540 | 52.381 | 0.00 | 0.00 | 33.74 | 5.12 |
714 | 722 | 1.804748 | CCTTGTTAGGCTTTCCACGTC | 59.195 | 52.381 | 0.00 | 0.00 | 33.99 | 4.34 |
715 | 723 | 1.544759 | CCCTTGTTAGGCTTTCCACGT | 60.545 | 52.381 | 0.00 | 0.00 | 40.50 | 4.49 |
716 | 724 | 1.165270 | CCCTTGTTAGGCTTTCCACG | 58.835 | 55.000 | 0.00 | 0.00 | 40.50 | 4.94 |
717 | 725 | 2.579410 | TCCCTTGTTAGGCTTTCCAC | 57.421 | 50.000 | 0.00 | 0.00 | 40.50 | 4.02 |
718 | 726 | 2.355716 | CGATCCCTTGTTAGGCTTTCCA | 60.356 | 50.000 | 0.00 | 0.00 | 40.50 | 3.53 |
719 | 727 | 2.289565 | CGATCCCTTGTTAGGCTTTCC | 58.710 | 52.381 | 0.00 | 0.00 | 40.50 | 3.13 |
720 | 728 | 2.937149 | GACGATCCCTTGTTAGGCTTTC | 59.063 | 50.000 | 0.00 | 0.00 | 40.50 | 2.62 |
721 | 729 | 2.572104 | AGACGATCCCTTGTTAGGCTTT | 59.428 | 45.455 | 0.00 | 0.00 | 40.50 | 3.51 |
722 | 730 | 2.188817 | AGACGATCCCTTGTTAGGCTT | 58.811 | 47.619 | 0.00 | 0.00 | 40.50 | 4.35 |
723 | 731 | 1.867363 | AGACGATCCCTTGTTAGGCT | 58.133 | 50.000 | 0.00 | 0.00 | 40.50 | 4.58 |
724 | 732 | 2.429610 | TGTAGACGATCCCTTGTTAGGC | 59.570 | 50.000 | 0.00 | 0.00 | 40.50 | 3.93 |
725 | 733 | 3.491104 | GCTGTAGACGATCCCTTGTTAGG | 60.491 | 52.174 | 0.00 | 0.00 | 41.60 | 2.69 |
726 | 734 | 3.130516 | TGCTGTAGACGATCCCTTGTTAG | 59.869 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
727 | 735 | 3.093814 | TGCTGTAGACGATCCCTTGTTA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
728 | 736 | 1.899814 | TGCTGTAGACGATCCCTTGTT | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
729 | 737 | 1.557099 | TGCTGTAGACGATCCCTTGT | 58.443 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
730 | 738 | 2.672961 | TTGCTGTAGACGATCCCTTG | 57.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
731 | 739 | 3.260884 | TCTTTTGCTGTAGACGATCCCTT | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
732 | 740 | 2.832129 | TCTTTTGCTGTAGACGATCCCT | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
733 | 741 | 3.247006 | TCTTTTGCTGTAGACGATCCC | 57.753 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
734 | 742 | 5.607119 | TTTTCTTTTGCTGTAGACGATCC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
735 | 743 | 6.080406 | CCTTTTTCTTTTGCTGTAGACGATC | 58.920 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
736 | 744 | 5.531287 | ACCTTTTTCTTTTGCTGTAGACGAT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
737 | 745 | 4.879545 | ACCTTTTTCTTTTGCTGTAGACGA | 59.120 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
738 | 746 | 4.970003 | CACCTTTTTCTTTTGCTGTAGACG | 59.030 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
739 | 747 | 6.131544 | TCACCTTTTTCTTTTGCTGTAGAC | 57.868 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
740 | 748 | 6.767524 | TTCACCTTTTTCTTTTGCTGTAGA | 57.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
741 | 749 | 9.528018 | TTTATTCACCTTTTTCTTTTGCTGTAG | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
742 | 750 | 9.877178 | TTTTATTCACCTTTTTCTTTTGCTGTA | 57.123 | 25.926 | 0.00 | 0.00 | 0.00 | 2.74 |
743 | 751 | 8.785329 | TTTTATTCACCTTTTTCTTTTGCTGT | 57.215 | 26.923 | 0.00 | 0.00 | 0.00 | 4.40 |
744 | 752 | 9.489393 | GTTTTTATTCACCTTTTTCTTTTGCTG | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 4.41 |
745 | 753 | 9.448438 | AGTTTTTATTCACCTTTTTCTTTTGCT | 57.552 | 25.926 | 0.00 | 0.00 | 0.00 | 3.91 |
746 | 754 | 9.489393 | CAGTTTTTATTCACCTTTTTCTTTTGC | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
747 | 755 | 9.489393 | GCAGTTTTTATTCACCTTTTTCTTTTG | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
748 | 756 | 8.387354 | CGCAGTTTTTATTCACCTTTTTCTTTT | 58.613 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
749 | 757 | 7.762159 | TCGCAGTTTTTATTCACCTTTTTCTTT | 59.238 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
750 | 758 | 7.262048 | TCGCAGTTTTTATTCACCTTTTTCTT | 58.738 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
751 | 759 | 6.801575 | TCGCAGTTTTTATTCACCTTTTTCT | 58.198 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
752 | 760 | 7.222031 | ACTTCGCAGTTTTTATTCACCTTTTTC | 59.778 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
753 | 761 | 7.010091 | CACTTCGCAGTTTTTATTCACCTTTTT | 59.990 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
754 | 762 | 6.475402 | CACTTCGCAGTTTTTATTCACCTTTT | 59.525 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
755 | 763 | 5.977129 | CACTTCGCAGTTTTTATTCACCTTT | 59.023 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
756 | 764 | 5.507315 | CCACTTCGCAGTTTTTATTCACCTT | 60.507 | 40.000 | 0.00 | 0.00 | 0.00 | 3.50 |
757 | 765 | 4.023193 | CCACTTCGCAGTTTTTATTCACCT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
758 | 766 | 4.226761 | CCACTTCGCAGTTTTTATTCACC | 58.773 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
759 | 767 | 4.226761 | CCCACTTCGCAGTTTTTATTCAC | 58.773 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
770 | 778 | 2.892425 | GATCGGCCCACTTCGCAG | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
771 | 779 | 4.467084 | GGATCGGCCCACTTCGCA | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 5.10 |
796 | 804 | 3.855895 | GCCGTCTTATTCGTATAGCAGCA | 60.856 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
797 | 805 | 2.662156 | GCCGTCTTATTCGTATAGCAGC | 59.338 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
798 | 806 | 3.243336 | GGCCGTCTTATTCGTATAGCAG | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
799 | 807 | 2.029649 | GGGCCGTCTTATTCGTATAGCA | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
800 | 808 | 2.603953 | GGGCCGTCTTATTCGTATAGC | 58.396 | 52.381 | 0.00 | 0.00 | 0.00 | 2.97 |
801 | 809 | 2.227388 | ACGGGCCGTCTTATTCGTATAG | 59.773 | 50.000 | 28.83 | 0.00 | 33.69 | 1.31 |
810 | 818 | 1.549203 | AGTTCTAACGGGCCGTCTTA | 58.451 | 50.000 | 34.23 | 20.84 | 39.99 | 2.10 |
818 | 826 | 6.405397 | CCCAATTTGGAAATAGTTCTAACGGG | 60.405 | 42.308 | 17.24 | 12.77 | 40.96 | 5.28 |
877 | 885 | 0.759060 | GTTTTCCCCACTGGTTGGCT | 60.759 | 55.000 | 0.00 | 0.00 | 45.37 | 4.75 |
1368 | 1394 | 5.047802 | CCAAAGATGCTACAGGACAAACAAT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1402 | 1428 | 0.600255 | CGAGGCCGAACAAGAACAGT | 60.600 | 55.000 | 0.00 | 0.00 | 38.22 | 3.55 |
1815 | 1841 | 7.054124 | CAGAGGCAGTTCCCTATTAAACATAA | 58.946 | 38.462 | 0.00 | 0.00 | 34.69 | 1.90 |
1894 | 1920 | 6.150976 | ACATCAAAATGCAAACGGAATAGAGA | 59.849 | 34.615 | 0.00 | 0.00 | 36.26 | 3.10 |
2008 | 2036 | 8.682936 | AAGTTGCCCTATAAGATTTACTGATG | 57.317 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
2195 | 2223 | 2.309136 | ATAAGCAAAGGCCAGTTGGT | 57.691 | 45.000 | 15.84 | 15.84 | 42.56 | 3.67 |
2245 | 2273 | 4.380233 | GCCCATGACAAATCTTCTTGTGAG | 60.380 | 45.833 | 0.00 | 0.00 | 39.63 | 3.51 |
2280 | 2308 | 9.965902 | AGTGATATTGGTTCTTAGAATGAAGTT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2384 | 2412 | 6.315642 | ACAAATCAGAGCACATAGATCTTGTG | 59.684 | 38.462 | 22.94 | 22.94 | 40.91 | 3.33 |
2500 | 2549 | 8.798859 | AAAAGTATGAGTAAGCTGTCAATGAT | 57.201 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
2637 | 2686 | 4.261322 | CCGTGCATGGGAAAGATAAATCTG | 60.261 | 45.833 | 17.90 | 0.00 | 37.19 | 2.90 |
2658 | 2707 | 4.989279 | AGAAATTCAATTCATGGTCCCG | 57.011 | 40.909 | 0.00 | 0.00 | 0.00 | 5.14 |
2787 | 2836 | 7.298374 | GGGGGAAATAGGAGAATTTCAGTATT | 58.702 | 38.462 | 10.50 | 0.00 | 44.28 | 1.89 |
2855 | 2904 | 5.224888 | CAGAATTTTGTTGGACCATGTCAG | 58.775 | 41.667 | 0.00 | 0.00 | 33.68 | 3.51 |
3461 | 3519 | 5.005740 | CCAACTTCTCAAGATTCATGTGGA | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
3487 | 3545 | 8.256356 | AGATACCTAACAGAAGTTGCATAGAT | 57.744 | 34.615 | 0.00 | 0.00 | 38.69 | 1.98 |
3543 | 3609 | 4.187694 | CAGCACTTCTCTTCCTAACATCC | 58.812 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3579 | 3645 | 8.750515 | TGCCAATATCATTAACAATCTTCAGA | 57.249 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
3598 | 3664 | 7.640313 | AGGTATGAGATTATGATGATGCCAAT | 58.360 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
3613 | 3696 | 4.756564 | TGCTCCTATGGAAGGTATGAGAT | 58.243 | 43.478 | 0.00 | 0.00 | 46.62 | 2.75 |
3673 | 3756 | 8.836413 | TCAATGTTGTTAGTCTAGAAAAACAGG | 58.164 | 33.333 | 16.46 | 7.32 | 33.70 | 4.00 |
3721 | 3806 | 5.500234 | AGCTACCTTGCATTTGATTACAGA | 58.500 | 37.500 | 0.00 | 0.00 | 34.99 | 3.41 |
3722 | 3807 | 5.220931 | GGAGCTACCTTGCATTTGATTACAG | 60.221 | 44.000 | 0.00 | 0.00 | 35.41 | 2.74 |
3723 | 3808 | 4.640201 | GGAGCTACCTTGCATTTGATTACA | 59.360 | 41.667 | 0.00 | 0.00 | 35.41 | 2.41 |
3724 | 3809 | 4.640201 | TGGAGCTACCTTGCATTTGATTAC | 59.360 | 41.667 | 0.00 | 0.00 | 39.86 | 1.89 |
3728 | 3813 | 2.436417 | GTGGAGCTACCTTGCATTTGA | 58.564 | 47.619 | 0.00 | 0.00 | 39.86 | 2.69 |
3752 | 3837 | 5.895636 | ACATGCTATTGGATTTCACGAAA | 57.104 | 34.783 | 0.00 | 0.00 | 34.46 | 3.46 |
3846 | 3955 | 3.713288 | TGAACTACACGAACTTCACAGG | 58.287 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3858 | 3971 | 6.865205 | AGTACGAAACAAGGTATGAACTACAC | 59.135 | 38.462 | 0.00 | 0.00 | 31.44 | 2.90 |
3912 | 4025 | 2.202946 | TTGCAACACGCGTCCAGA | 60.203 | 55.556 | 9.86 | 0.00 | 46.97 | 3.86 |
3920 | 4033 | 3.425193 | GCCTGAAAAATAGTTGCAACACG | 59.575 | 43.478 | 30.11 | 7.91 | 0.00 | 4.49 |
3930 | 4043 | 5.984926 | TGCAAAAGAACAGCCTGAAAAATAG | 59.015 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3937 | 4050 | 1.677576 | CAGTGCAAAAGAACAGCCTGA | 59.322 | 47.619 | 0.00 | 0.00 | 32.16 | 3.86 |
3947 | 4060 | 4.331356 | GCAGGTGCAGTGCAAAAG | 57.669 | 55.556 | 21.67 | 13.18 | 41.47 | 2.27 |
3964 | 4077 | 6.742718 | CGAACTATTGGTGAAAAGCATACTTG | 59.257 | 38.462 | 0.00 | 0.00 | 35.85 | 3.16 |
3965 | 4078 | 6.430000 | ACGAACTATTGGTGAAAAGCATACTT | 59.570 | 34.615 | 0.00 | 0.00 | 37.90 | 2.24 |
3966 | 4079 | 5.938125 | ACGAACTATTGGTGAAAAGCATACT | 59.062 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3972 | 4085 | 5.625311 | GCAAGAACGAACTATTGGTGAAAAG | 59.375 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3989 | 4102 | 6.640499 | TGTAGCATTTACATGTTTGCAAGAAC | 59.360 | 34.615 | 22.31 | 16.32 | 37.56 | 3.01 |
4087 | 4200 | 4.440103 | GCGACAATGTACAATAGTAGACCG | 59.560 | 45.833 | 0.00 | 0.53 | 0.00 | 4.79 |
4099 | 4212 | 1.393539 | AGATTGCGTGCGACAATGTAC | 59.606 | 47.619 | 14.97 | 0.00 | 37.85 | 2.90 |
4105 | 4218 | 1.428370 | GCCATAGATTGCGTGCGACA | 61.428 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4108 | 4221 | 2.246397 | CGCCATAGATTGCGTGCG | 59.754 | 61.111 | 0.11 | 0.00 | 45.43 | 5.34 |
4148 | 4261 | 6.486993 | CACCAATGATCATCAGATTCAGACAT | 59.513 | 38.462 | 9.06 | 0.00 | 33.72 | 3.06 |
4272 | 4385 | 4.758251 | TGGTGATGGACGCGCAGG | 62.758 | 66.667 | 5.73 | 0.00 | 0.00 | 4.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.