Multiple sequence alignment - TraesCS6D01G251000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G251000 chr6D 100.000 5811 0 0 1 5811 354843821 354838011 0.000000e+00 10732.0
1 TraesCS6D01G251000 chr6D 87.865 445 44 8 259 696 412380713 412381154 1.120000e-141 514.0
2 TraesCS6D01G251000 chr6A 94.053 2556 76 28 2629 5133 486965032 486967562 0.000000e+00 3808.0
3 TraesCS6D01G251000 chr6A 91.146 2225 112 42 378 2547 486962839 486965033 0.000000e+00 2939.0
4 TraesCS6D01G251000 chr6A 92.945 326 21 1 5365 5688 486967570 486967895 1.900000e-129 473.0
5 TraesCS6D01G251000 chr6A 90.400 250 19 4 1 246 486962585 486962833 2.020000e-84 324.0
6 TraesCS6D01G251000 chr6B 94.484 1559 57 11 889 2434 523199919 523201461 0.000000e+00 2375.0
7 TraesCS6D01G251000 chr6B 92.917 1539 62 14 3633 5133 523202583 523204112 0.000000e+00 2194.0
8 TraesCS6D01G251000 chr6B 92.413 804 44 9 2631 3432 523201654 523202442 0.000000e+00 1131.0
9 TraesCS6D01G251000 chr6B 87.849 716 45 22 1 702 523198676 523199363 0.000000e+00 802.0
10 TraesCS6D01G251000 chr6B 85.043 234 25 7 5503 5729 523204180 523204410 4.530000e-56 230.0
11 TraesCS6D01G251000 chr6B 93.750 128 6 1 3418 3543 523202457 523202584 2.140000e-44 191.0
12 TraesCS6D01G251000 chr6B 94.118 119 7 0 2429 2547 523201533 523201651 1.290000e-41 182.0
13 TraesCS6D01G251000 chr6B 90.000 140 11 2 5138 5277 503132802 503132666 1.660000e-40 178.0
14 TraesCS6D01G251000 chr6B 93.939 66 4 0 5375 5440 523204122 523204187 3.710000e-17 100.0
15 TraesCS6D01G251000 chr6B 91.176 68 5 1 152 218 632772209 632772276 2.230000e-14 91.6
16 TraesCS6D01G251000 chr2D 83.135 587 60 15 151 721 286487834 286488397 3.130000e-137 499.0
17 TraesCS6D01G251000 chr2D 90.000 140 11 2 5138 5277 380232665 380232529 1.660000e-40 178.0
18 TraesCS6D01G251000 chr2D 80.093 216 40 2 5 217 634436826 634436611 2.170000e-34 158.0
19 TraesCS6D01G251000 chr2D 75.698 358 54 23 5363 5710 37044214 37044548 1.300000e-31 148.0
20 TraesCS6D01G251000 chr2D 94.318 88 5 0 2543 2630 85925905 85925992 1.020000e-27 135.0
21 TraesCS6D01G251000 chr2D 94.318 88 5 0 2543 2630 627260879 627260966 1.020000e-27 135.0
22 TraesCS6D01G251000 chr2B 82.594 586 81 11 151 721 316772916 316772337 1.120000e-136 497.0
23 TraesCS6D01G251000 chr2B 81.186 590 86 11 151 721 316879892 316879309 8.880000e-123 451.0
24 TraesCS6D01G251000 chr2B 79.817 218 38 5 5 217 777426699 777426483 2.800000e-33 154.0
25 TraesCS6D01G251000 chr2B 74.795 365 57 26 5363 5717 63837668 63837329 1.310000e-26 132.0
26 TraesCS6D01G251000 chr5A 84.580 441 55 7 220 649 11091666 11092104 5.380000e-115 425.0
27 TraesCS6D01G251000 chr5A 90.000 140 11 2 5138 5277 347205530 347205394 1.660000e-40 178.0
28 TraesCS6D01G251000 chr5A 93.056 72 5 0 3539 3610 462866834 462866905 7.960000e-19 106.0
29 TraesCS6D01G251000 chr7D 80.727 275 32 5 149 403 93997259 93997532 1.650000e-45 195.0
30 TraesCS6D01G251000 chr7D 88.182 110 10 3 2523 2630 163351777 163351885 1.700000e-25 128.0
31 TraesCS6D01G251000 chr7D 95.652 69 3 0 3542 3610 4643993 4644061 1.710000e-20 111.0
32 TraesCS6D01G251000 chr2A 90.714 140 10 2 5138 5277 309010083 309010219 3.580000e-42 183.0
33 TraesCS6D01G251000 chr2A 95.349 86 3 1 2546 2630 18632655 18632740 1.020000e-27 135.0
34 TraesCS6D01G251000 chr2A 82.645 121 19 2 97 216 717726335 717726216 7.960000e-19 106.0
35 TraesCS6D01G251000 chr7A 90.000 140 11 2 5138 5277 588597909 588598045 1.660000e-40 178.0
36 TraesCS6D01G251000 chr7A 91.781 73 6 0 3538 3610 110866300 110866372 1.030000e-17 102.0
37 TraesCS6D01G251000 chr5D 90.000 140 11 2 5138 5277 485788933 485789069 1.660000e-40 178.0
38 TraesCS6D01G251000 chr5D 95.652 69 3 0 3542 3610 384413495 384413563 1.710000e-20 111.0
39 TraesCS6D01G251000 chr5D 84.884 86 8 3 96 177 382253260 382253344 1.340000e-11 82.4
40 TraesCS6D01G251000 chr4D 90.000 140 11 2 5138 5277 265124715 265124851 1.660000e-40 178.0
41 TraesCS6D01G251000 chr4D 75.084 297 47 14 5440 5712 121437020 121437313 4.760000e-21 113.0
42 TraesCS6D01G251000 chr4D 92.754 69 5 0 3542 3610 455628471 455628539 3.710000e-17 100.0
43 TraesCS6D01G251000 chr4D 96.970 33 1 0 665 697 54897928 54897896 8.130000e-04 56.5
44 TraesCS6D01G251000 chr3D 90.000 140 11 2 5138 5277 161112521 161112385 1.660000e-40 178.0
45 TraesCS6D01G251000 chr3D 93.333 90 6 0 2542 2631 29699404 29699493 3.650000e-27 134.0
46 TraesCS6D01G251000 chr3D 92.857 70 4 1 3542 3610 123300244 123300175 3.710000e-17 100.0
47 TraesCS6D01G251000 chr3D 80.808 99 17 2 5422 5520 15002908 15002812 6.240000e-10 76.8
48 TraesCS6D01G251000 chr1D 90.000 140 11 2 5138 5277 265366375 265366239 1.660000e-40 178.0
49 TraesCS6D01G251000 chr1D 89.091 110 9 3 2523 2630 113880743 113880851 3.650000e-27 134.0
50 TraesCS6D01G251000 chr1D 95.652 69 3 0 3542 3610 464856774 464856842 1.710000e-20 111.0
51 TraesCS6D01G251000 chr4B 93.750 96 5 1 2546 2641 106975942 106975848 6.070000e-30 143.0
52 TraesCS6D01G251000 chr1A 94.382 89 4 1 2543 2630 439847016 439847104 1.020000e-27 135.0
53 TraesCS6D01G251000 chr7B 87.288 118 11 4 2540 2656 553217810 553217924 1.310000e-26 132.0
54 TraesCS6D01G251000 chr3A 88.172 93 8 3 3542 3634 714435804 714435893 2.210000e-19 108.0
55 TraesCS6D01G251000 chr1B 100.000 40 0 0 5603 5642 207264926 207264965 2.250000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G251000 chr6D 354838011 354843821 5810 True 10732.000 10732 100.000000 1 5811 1 chr6D.!!$R1 5810
1 TraesCS6D01G251000 chr6A 486962585 486967895 5310 False 1886.000 3808 92.136000 1 5688 4 chr6A.!!$F1 5687
2 TraesCS6D01G251000 chr6B 523198676 523204410 5734 False 900.625 2375 91.814125 1 5729 8 chr6B.!!$F2 5728
3 TraesCS6D01G251000 chr2D 286487834 286488397 563 False 499.000 499 83.135000 151 721 1 chr2D.!!$F3 570
4 TraesCS6D01G251000 chr2B 316772337 316772916 579 True 497.000 497 82.594000 151 721 1 chr2B.!!$R2 570
5 TraesCS6D01G251000 chr2B 316879309 316879892 583 True 451.000 451 81.186000 151 721 1 chr2B.!!$R3 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 529 0.328258 CGAGGTCCAATCCCAAACCT 59.672 55.0 0.00 0.0 44.74 3.50 F
804 1161 1.035385 TCGCGATTAGCTGAGGGACA 61.035 55.0 3.71 0.0 45.59 4.02 F
1621 2055 0.820891 AGTGCTGGCTTGTGGACTTG 60.821 55.0 0.00 0.0 30.83 3.16 F
2076 2518 1.259609 CTGGCATTGGTGTTGATGGT 58.740 50.0 0.00 0.0 0.00 3.55 F
2178 2620 2.156891 CCAAGTAATGTGTCGTTCGTGG 59.843 50.0 0.00 0.0 0.00 4.94 F
3300 3836 0.469144 GGTTCAACCCTTGCCCTGAA 60.469 55.0 0.00 0.0 30.04 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1885 0.542333 GTCCAGGAACCCTAAGCCTC 59.458 60.000 0.0 0.0 29.64 4.70 R
2613 3137 0.408700 AACTACTCCCTCTGTCCCGT 59.591 55.000 0.0 0.0 0.00 5.28 R
2615 3139 0.537653 GCAACTACTCCCTCTGTCCC 59.462 60.000 0.0 0.0 0.00 4.46 R
3289 3825 3.703001 TCTAAGAACTTCAGGGCAAGG 57.297 47.619 0.0 0.0 0.00 3.61 R
3416 3955 6.105397 AGCATTCCACATTCAATTTCAGTT 57.895 33.333 0.0 0.0 0.00 3.16 R
5032 5649 0.753867 TGTACCAGTTGACTCGGCAA 59.246 50.000 0.0 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 33 3.733337 AGAGACAAGTGCATTTTCGTCT 58.267 40.909 12.80 12.80 36.47 4.18
36 40 4.516698 ACAAGTGCATTTTCGTCTCTCAAT 59.483 37.500 0.00 0.00 0.00 2.57
42 46 5.471797 TGCATTTTCGTCTCTCAATTTACCA 59.528 36.000 0.00 0.00 0.00 3.25
95 99 1.622312 GGGTACAACTTTCGTCCCTCT 59.378 52.381 0.00 0.00 32.89 3.69
96 100 2.038164 GGGTACAACTTTCGTCCCTCTT 59.962 50.000 0.00 0.00 32.89 2.85
127 133 4.163458 CCAGGTATAGTTAGTCCCTTGCAA 59.837 45.833 0.00 0.00 0.00 4.08
196 202 1.067142 GGCCACATCGTCACTGTAAGA 60.067 52.381 0.00 0.00 37.43 2.10
204 210 4.729227 TCGTCACTGTAAGATGGCATAA 57.271 40.909 0.00 0.00 37.43 1.90
279 299 3.117171 GCGCTGCTCCAGTGACAG 61.117 66.667 9.74 0.00 43.78 3.51
329 364 3.323115 ACTGTGTGATGCAGAGAGAAAGA 59.677 43.478 0.00 0.00 40.58 2.52
385 422 2.045280 CTCCTCCCGCTAGATGGTG 58.955 63.158 0.00 0.00 0.00 4.17
410 449 7.294720 TGAACATGATAGTTGGGGTAAGGATAT 59.705 37.037 0.00 0.00 0.00 1.63
488 529 0.328258 CGAGGTCCAATCCCAAACCT 59.672 55.000 0.00 0.00 44.74 3.50
532 573 4.457257 TGATAATGTGATCAAAACCGTGCA 59.543 37.500 0.00 0.00 32.84 4.57
534 575 2.483583 TGTGATCAAAACCGTGCAAC 57.516 45.000 0.00 0.00 0.00 4.17
611 653 9.421399 TCTACATGATATTAAGAGTTGAGGACA 57.579 33.333 0.00 0.00 0.00 4.02
612 654 9.469807 CTACATGATATTAAGAGTTGAGGACAC 57.530 37.037 0.00 0.00 0.00 3.67
616 658 7.907389 TGATATTAAGAGTTGAGGACACAAGT 58.093 34.615 0.00 0.00 36.33 3.16
618 660 6.867662 ATTAAGAGTTGAGGACACAAGTTG 57.132 37.500 0.00 0.00 34.18 3.16
619 661 2.565841 AGAGTTGAGGACACAAGTTGC 58.434 47.619 1.81 0.00 34.18 4.17
620 662 2.092968 AGAGTTGAGGACACAAGTTGCA 60.093 45.455 1.81 0.00 34.18 4.08
661 705 7.267128 ACAATGACACATCAAGACAAAAACAT 58.733 30.769 0.00 0.00 38.69 2.71
663 707 6.448207 TGACACATCAAGACAAAAACATGA 57.552 33.333 0.00 0.00 0.00 3.07
725 770 5.091261 AGTATTAAGAGTTGAGGGCAGTG 57.909 43.478 0.00 0.00 0.00 3.66
737 1066 1.378762 GGCAGTGCCCCTAGTTGAA 59.621 57.895 24.53 0.00 44.06 2.69
750 1079 4.020839 CCCTAGTTGAAGGACGAAGGTTAA 60.021 45.833 0.00 0.00 39.15 2.01
752 1081 5.993441 CCTAGTTGAAGGACGAAGGTTAAAA 59.007 40.000 0.00 0.00 39.15 1.52
753 1082 6.484308 CCTAGTTGAAGGACGAAGGTTAAAAA 59.516 38.462 0.00 0.00 39.15 1.94
795 1152 1.084370 AGGCACACTTCGCGATTAGC 61.084 55.000 10.88 10.26 43.95 3.09
804 1161 1.035385 TCGCGATTAGCTGAGGGACA 61.035 55.000 3.71 0.00 45.59 4.02
811 1168 4.396166 CGATTAGCTGAGGGACAAAAATGT 59.604 41.667 0.00 0.00 0.00 2.71
987 1404 2.793278 TCATATGCGCACATCGTACT 57.207 45.000 14.90 0.00 41.07 2.73
989 1406 3.453424 TCATATGCGCACATCGTACTTT 58.547 40.909 14.90 0.00 41.07 2.66
996 1416 2.029244 CGCACATCGTACTTTCATCCAC 59.971 50.000 0.00 0.00 0.00 4.02
1119 1545 2.609183 CTTAAGGACGCCGTCGGAGG 62.609 65.000 17.49 8.44 40.69 4.30
1151 1577 4.194720 CCTTCGTCGCCCTCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
1435 1861 3.055094 GGGTGAGTTCCTAGCAGATTTCA 60.055 47.826 0.00 0.00 0.00 2.69
1458 1884 2.703416 TGGATGTGTGAGTGCTGATTC 58.297 47.619 0.00 0.00 0.00 2.52
1459 1885 1.662629 GGATGTGTGAGTGCTGATTCG 59.337 52.381 0.00 0.00 0.00 3.34
1460 1886 2.610433 GATGTGTGAGTGCTGATTCGA 58.390 47.619 0.00 0.00 0.00 3.71
1544 1971 1.077265 CCCAAACTGCACCCATCCT 59.923 57.895 0.00 0.00 0.00 3.24
1621 2055 0.820891 AGTGCTGGCTTGTGGACTTG 60.821 55.000 0.00 0.00 30.83 3.16
1700 2139 8.474025 TGTTAAAGTTTCACCTTTCATCATTGT 58.526 29.630 0.00 0.00 36.18 2.71
1723 2162 6.855914 TGTTACTGTTTGATTTCGCTCATTTC 59.144 34.615 0.00 0.00 0.00 2.17
1747 2186 7.915508 TCGTTTCTGTCGCATTATTAATTGAT 58.084 30.769 0.00 0.00 0.00 2.57
2028 2470 3.638160 AGCATTCTGTCATTGTGGTGTTT 59.362 39.130 0.00 0.00 0.00 2.83
2076 2518 1.259609 CTGGCATTGGTGTTGATGGT 58.740 50.000 0.00 0.00 0.00 3.55
2178 2620 2.156891 CCAAGTAATGTGTCGTTCGTGG 59.843 50.000 0.00 0.00 0.00 4.94
2205 2647 7.755373 GGAATTCTTGCTGATTTAGTTGGTTAC 59.245 37.037 5.23 0.00 0.00 2.50
2551 3075 9.950496 ATGTGATCTGTTAAATCATATACTCCC 57.050 33.333 0.00 0.00 34.42 4.30
2552 3076 9.159254 TGTGATCTGTTAAATCATATACTCCCT 57.841 33.333 0.00 0.00 35.69 4.20
2553 3077 9.646427 GTGATCTGTTAAATCATATACTCCCTC 57.354 37.037 0.00 0.00 35.69 4.30
2554 3078 8.816894 TGATCTGTTAAATCATATACTCCCTCC 58.183 37.037 0.00 0.00 0.00 4.30
2555 3079 7.228314 TCTGTTAAATCATATACTCCCTCCG 57.772 40.000 0.00 0.00 0.00 4.63
2556 3080 6.781014 TCTGTTAAATCATATACTCCCTCCGT 59.219 38.462 0.00 0.00 0.00 4.69
2557 3081 6.989659 TGTTAAATCATATACTCCCTCCGTC 58.010 40.000 0.00 0.00 0.00 4.79
2558 3082 6.781014 TGTTAAATCATATACTCCCTCCGTCT 59.219 38.462 0.00 0.00 0.00 4.18
2559 3083 5.986501 AAATCATATACTCCCTCCGTCTC 57.013 43.478 0.00 0.00 0.00 3.36
2560 3084 4.659529 ATCATATACTCCCTCCGTCTCA 57.340 45.455 0.00 0.00 0.00 3.27
2561 3085 4.659529 TCATATACTCCCTCCGTCTCAT 57.340 45.455 0.00 0.00 0.00 2.90
2562 3086 5.774102 TCATATACTCCCTCCGTCTCATA 57.226 43.478 0.00 0.00 0.00 2.15
2563 3087 6.135819 TCATATACTCCCTCCGTCTCATAA 57.864 41.667 0.00 0.00 0.00 1.90
2564 3088 6.732487 TCATATACTCCCTCCGTCTCATAAT 58.268 40.000 0.00 0.00 0.00 1.28
2565 3089 7.868974 TCATATACTCCCTCCGTCTCATAATA 58.131 38.462 0.00 0.00 0.00 0.98
2566 3090 8.503573 TCATATACTCCCTCCGTCTCATAATAT 58.496 37.037 0.00 0.00 0.00 1.28
2567 3091 9.794719 CATATACTCCCTCCGTCTCATAATATA 57.205 37.037 0.00 0.00 0.00 0.86
2569 3093 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
2570 3094 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
2571 3095 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
2572 3096 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
2573 3097 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
2574 3098 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
2575 3099 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
2576 3100 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
2577 3101 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
2578 3102 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
2599 3123 7.450124 TTTTTACACCAGTGTAGTGTCAAAA 57.550 32.000 15.13 15.13 45.13 2.44
2600 3124 7.450124 TTTTACACCAGTGTAGTGTCAAAAA 57.550 32.000 10.33 8.24 45.13 1.94
2601 3125 7.633193 TTTACACCAGTGTAGTGTCAAAAAT 57.367 32.000 10.33 0.00 45.13 1.82
2602 3126 5.499139 ACACCAGTGTAGTGTCAAAAATG 57.501 39.130 0.54 0.00 45.13 2.32
2603 3127 4.202010 ACACCAGTGTAGTGTCAAAAATGC 60.202 41.667 0.54 0.00 45.13 3.56
2604 3128 4.036734 CACCAGTGTAGTGTCAAAAATGCT 59.963 41.667 0.00 0.00 0.00 3.79
2605 3129 4.275936 ACCAGTGTAGTGTCAAAAATGCTC 59.724 41.667 0.00 0.00 0.00 4.26
2606 3130 4.516698 CCAGTGTAGTGTCAAAAATGCTCT 59.483 41.667 0.00 0.00 0.00 4.09
2607 3131 5.009010 CCAGTGTAGTGTCAAAAATGCTCTT 59.991 40.000 0.00 0.00 0.00 2.85
2608 3132 6.204688 CCAGTGTAGTGTCAAAAATGCTCTTA 59.795 38.462 0.00 0.00 0.00 2.10
2609 3133 7.094634 CCAGTGTAGTGTCAAAAATGCTCTTAT 60.095 37.037 0.00 0.00 0.00 1.73
2610 3134 8.935844 CAGTGTAGTGTCAAAAATGCTCTTATA 58.064 33.333 0.00 0.00 0.00 0.98
2611 3135 9.672673 AGTGTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
2616 3140 8.612619 AGTGTCAAAAATGCTCTTATATTACGG 58.387 33.333 0.00 0.00 0.00 4.02
2617 3141 7.855904 GTGTCAAAAATGCTCTTATATTACGGG 59.144 37.037 0.00 0.00 0.00 5.28
2618 3142 7.771361 TGTCAAAAATGCTCTTATATTACGGGA 59.229 33.333 0.00 0.00 0.00 5.14
2619 3143 8.068380 GTCAAAAATGCTCTTATATTACGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2620 3144 7.771361 TCAAAAATGCTCTTATATTACGGGACA 59.229 33.333 0.00 0.00 0.00 4.02
2621 3145 7.730364 AAAATGCTCTTATATTACGGGACAG 57.270 36.000 0.00 0.00 0.00 3.51
2622 3146 6.665992 AATGCTCTTATATTACGGGACAGA 57.334 37.500 0.00 0.00 0.00 3.41
2623 3147 5.707242 TGCTCTTATATTACGGGACAGAG 57.293 43.478 0.00 0.00 0.00 3.35
2624 3148 4.523173 TGCTCTTATATTACGGGACAGAGG 59.477 45.833 0.00 0.00 0.00 3.69
2625 3149 4.082136 GCTCTTATATTACGGGACAGAGGG 60.082 50.000 0.00 0.00 0.00 4.30
2626 3150 5.322754 CTCTTATATTACGGGACAGAGGGA 58.677 45.833 0.00 0.00 0.00 4.20
2627 3151 5.322754 TCTTATATTACGGGACAGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
2908 3438 3.470709 TCACCTTTTCTTGCTGTCAGAG 58.529 45.455 3.32 0.00 0.00 3.35
2909 3439 3.134623 TCACCTTTTCTTGCTGTCAGAGA 59.865 43.478 3.32 0.00 0.00 3.10
2910 3440 3.249559 CACCTTTTCTTGCTGTCAGAGAC 59.750 47.826 3.32 0.00 0.00 3.36
2911 3441 3.118261 ACCTTTTCTTGCTGTCAGAGACA 60.118 43.478 3.32 0.00 40.50 3.41
2912 3442 3.879295 CCTTTTCTTGCTGTCAGAGACAA 59.121 43.478 3.32 0.00 42.26 3.18
2913 3443 4.336433 CCTTTTCTTGCTGTCAGAGACAAA 59.664 41.667 3.32 2.53 42.26 2.83
2914 3444 5.163622 CCTTTTCTTGCTGTCAGAGACAAAA 60.164 40.000 3.32 2.61 42.26 2.44
3139 3675 7.991084 AGTCCCTGTTGTACCTTTATTTTAC 57.009 36.000 0.00 0.00 0.00 2.01
3289 3825 5.382664 TTCAGGGGATATAAGGTTCAACC 57.617 43.478 0.00 0.00 38.99 3.77
3300 3836 0.469144 GGTTCAACCCTTGCCCTGAA 60.469 55.000 0.00 0.00 30.04 3.02
3416 3955 3.507411 ACTTACTAGTGCTGGAGGAACA 58.493 45.455 5.39 0.00 31.99 3.18
3788 4357 8.068733 ACTCCTTTCTATAGGTAAGTCCATCTT 58.931 37.037 0.00 0.00 39.02 2.40
3800 4369 8.041323 AGGTAAGTCCATCTTTTATGTGTACAG 58.959 37.037 0.00 0.00 39.02 2.74
4282 4851 4.733850 TGAGCGAGAACTAACATACACAG 58.266 43.478 0.00 0.00 0.00 3.66
4478 5047 3.737559 TCCTAGATTTGCATTGGGTGT 57.262 42.857 0.00 0.00 0.00 4.16
4488 5057 5.913137 TTGCATTGGGTGTCCTAATTTAG 57.087 39.130 0.00 0.00 0.00 1.85
4536 5105 7.062839 GTGAGATAGCTGAACTCTTTTAGTGTG 59.937 40.741 14.38 0.00 38.88 3.82
4557 5130 3.452264 TGAGTGCTCATACAATGCTACCT 59.548 43.478 0.00 0.00 34.14 3.08
4745 5318 4.527038 CCTGCTACTCGGGGATCTAATAAA 59.473 45.833 0.00 0.00 37.58 1.40
4798 5371 5.532557 TCGTACCATGATATTCAAGCTCAG 58.467 41.667 0.00 0.00 0.00 3.35
4813 5386 4.408182 AGCTCAGTTTACCGCATAGAAT 57.592 40.909 0.00 0.00 0.00 2.40
4814 5387 4.770795 AGCTCAGTTTACCGCATAGAATT 58.229 39.130 0.00 0.00 0.00 2.17
4816 5389 5.986135 AGCTCAGTTTACCGCATAGAATTAG 59.014 40.000 0.00 0.00 0.00 1.73
4817 5390 5.983720 GCTCAGTTTACCGCATAGAATTAGA 59.016 40.000 0.00 0.00 0.00 2.10
4818 5391 6.479001 GCTCAGTTTACCGCATAGAATTAGAA 59.521 38.462 0.00 0.00 0.00 2.10
4819 5392 7.516943 GCTCAGTTTACCGCATAGAATTAGAAC 60.517 40.741 0.00 0.00 0.00 3.01
4820 5393 7.553334 TCAGTTTACCGCATAGAATTAGAACT 58.447 34.615 0.00 0.00 0.00 3.01
4864 5460 3.311596 AGTGTACGAGCTTGGTGTTTTTC 59.688 43.478 5.79 0.00 0.00 2.29
4923 5522 2.904697 TCATCTAGCCATGCTGTCAG 57.095 50.000 0.00 0.00 40.10 3.51
4978 5583 2.959030 TGAAAGTCATCTCGGATCGGAT 59.041 45.455 3.13 0.00 0.00 4.18
4984 5589 0.242286 ATCTCGGATCGGATTGCTCG 59.758 55.000 3.13 0.00 0.00 5.03
5003 5620 1.026718 GGCGCTGTTGGAGCTAACAT 61.027 55.000 7.64 0.00 46.64 2.71
5032 5649 4.235079 TGCAGAATTTAGGTAGCCATGT 57.765 40.909 0.00 0.00 0.00 3.21
5040 5657 1.078426 GGTAGCCATGTTGCCGAGT 60.078 57.895 0.00 0.00 0.00 4.18
5103 5721 4.085733 TGGGTACATAGCAAAAATGCAGT 58.914 39.130 3.41 0.00 37.25 4.40
5108 5726 2.437200 TAGCAAAAATGCAGTGCCAC 57.563 45.000 13.72 0.00 39.13 5.01
5164 5782 5.560966 ACTTTGCATATTAGGTTTGACCG 57.439 39.130 0.00 0.00 44.90 4.79
5165 5783 5.250200 ACTTTGCATATTAGGTTTGACCGA 58.750 37.500 0.00 0.00 44.90 4.69
5166 5784 5.708230 ACTTTGCATATTAGGTTTGACCGAA 59.292 36.000 0.00 0.00 44.90 4.30
5167 5785 5.811399 TTGCATATTAGGTTTGACCGAAG 57.189 39.130 0.00 0.00 44.90 3.79
5168 5786 4.839121 TGCATATTAGGTTTGACCGAAGT 58.161 39.130 0.00 0.00 44.90 3.01
5169 5787 4.873827 TGCATATTAGGTTTGACCGAAGTC 59.126 41.667 0.00 0.00 44.90 3.01
5184 5802 7.980742 GACCGAAGTCAAATTTTGTAAAGTT 57.019 32.000 8.89 0.00 42.99 2.66
5185 5803 7.749539 ACCGAAGTCAAATTTTGTAAAGTTG 57.250 32.000 8.89 6.11 0.00 3.16
5186 5804 6.754675 ACCGAAGTCAAATTTTGTAAAGTTGG 59.245 34.615 8.89 7.19 0.00 3.77
5187 5805 6.975772 CCGAAGTCAAATTTTGTAAAGTTGGA 59.024 34.615 8.89 0.00 0.00 3.53
5188 5806 7.043656 CCGAAGTCAAATTTTGTAAAGTTGGAC 60.044 37.037 8.89 10.45 38.27 4.02
5189 5807 7.043656 CGAAGTCAAATTTTGTAAAGTTGGACC 60.044 37.037 13.35 0.00 38.57 4.46
5190 5808 7.176589 AGTCAAATTTTGTAAAGTTGGACCA 57.823 32.000 13.35 0.00 38.57 4.02
5191 5809 7.616313 AGTCAAATTTTGTAAAGTTGGACCAA 58.384 30.769 1.69 1.69 38.57 3.67
5192 5810 7.763985 AGTCAAATTTTGTAAAGTTGGACCAAG 59.236 33.333 7.31 0.00 38.57 3.61
5193 5811 7.547722 GTCAAATTTTGTAAAGTTGGACCAAGT 59.452 33.333 7.31 8.16 34.36 3.16
5194 5812 8.097662 TCAAATTTTGTAAAGTTGGACCAAGTT 58.902 29.630 19.75 19.75 38.46 2.66
5195 5813 8.726068 CAAATTTTGTAAAGTTGGACCAAGTTT 58.274 29.630 32.48 32.48 45.30 2.66
5196 5814 9.945904 AAATTTTGTAAAGTTGGACCAAGTTTA 57.054 25.926 30.79 30.79 42.75 2.01
5200 5818 9.629878 TTTGTAAAGTTGGACCAAGTTTATAGA 57.370 29.630 34.22 27.55 45.09 1.98
5201 5819 8.842358 TGTAAAGTTGGACCAAGTTTATAGAG 57.158 34.615 34.22 0.00 45.09 2.43
5202 5820 8.653191 TGTAAAGTTGGACCAAGTTTATAGAGA 58.347 33.333 34.22 19.93 45.09 3.10
5203 5821 9.498176 GTAAAGTTGGACCAAGTTTATAGAGAA 57.502 33.333 34.22 19.38 45.09 2.87
5204 5822 8.990163 AAAGTTGGACCAAGTTTATAGAGAAA 57.010 30.769 30.37 0.00 42.75 2.52
5205 5823 8.990163 AAGTTGGACCAAGTTTATAGAGAAAA 57.010 30.769 19.75 0.00 33.83 2.29
5206 5824 8.990163 AGTTGGACCAAGTTTATAGAGAAAAA 57.010 30.769 7.31 0.00 0.00 1.94
5207 5825 9.588096 AGTTGGACCAAGTTTATAGAGAAAAAT 57.412 29.630 7.31 0.00 0.00 1.82
5307 5925 9.575783 TTTCGTTTATAAAACTTTGTCAAAGCT 57.424 25.926 22.58 10.10 42.27 3.74
5308 5926 8.776680 TCGTTTATAAAACTTTGTCAAAGCTC 57.223 30.769 22.58 0.00 42.27 4.09
5309 5927 8.399425 TCGTTTATAAAACTTTGTCAAAGCTCA 58.601 29.630 22.58 8.24 42.27 4.26
5310 5928 8.469125 CGTTTATAAAACTTTGTCAAAGCTCAC 58.531 33.333 22.58 9.13 42.27 3.51
5311 5929 9.296400 GTTTATAAAACTTTGTCAAAGCTCACA 57.704 29.630 22.58 7.30 42.27 3.58
5312 5930 9.862371 TTTATAAAACTTTGTCAAAGCTCACAA 57.138 25.926 22.58 9.23 42.27 3.33
5313 5931 9.862371 TTATAAAACTTTGTCAAAGCTCACAAA 57.138 25.926 22.58 14.53 42.27 2.83
5335 5953 7.817418 AAAGCTTGACTTTGACCATAGTTAA 57.183 32.000 0.00 0.00 47.00 2.01
5336 5954 8.409358 AAAGCTTGACTTTGACCATAGTTAAT 57.591 30.769 0.00 0.00 47.00 1.40
5337 5955 9.515226 AAAGCTTGACTTTGACCATAGTTAATA 57.485 29.630 0.00 0.00 47.00 0.98
5338 5956 9.686683 AAGCTTGACTTTGACCATAGTTAATAT 57.313 29.630 0.00 0.00 33.71 1.28
5382 6000 8.957466 GTAGGGAGTATTAAAAATGAGCTTGTT 58.043 33.333 0.00 0.00 0.00 2.83
5432 6050 5.221904 CCCTCCCACCAATTTTCTTTCAAAT 60.222 40.000 0.00 0.00 0.00 2.32
5447 6065 6.866480 TCTTTCAAATCATGCAATAACCCTC 58.134 36.000 0.00 0.00 0.00 4.30
5536 6154 9.421806 AGCAATCAACGAAAATCAAATAAATCA 57.578 25.926 0.00 0.00 0.00 2.57
5622 6242 5.012893 CCTTATCTTTGCCTATGGATTCCC 58.987 45.833 0.00 0.00 0.00 3.97
5624 6244 4.821532 ATCTTTGCCTATGGATTCCCTT 57.178 40.909 0.00 0.00 0.00 3.95
5647 6267 7.395190 TTCCCACAACATATCTCAATTTCAG 57.605 36.000 0.00 0.00 0.00 3.02
5654 6274 8.404000 ACAACATATCTCAATTTCAGCTCAATC 58.596 33.333 0.00 0.00 0.00 2.67
5656 6276 8.155821 ACATATCTCAATTTCAGCTCAATCAG 57.844 34.615 0.00 0.00 0.00 2.90
5694 6317 4.341235 GGACCACTAGAATAAAATTGCCCC 59.659 45.833 0.00 0.00 0.00 5.80
5696 6319 6.335781 ACCACTAGAATAAAATTGCCCCTA 57.664 37.500 0.00 0.00 0.00 3.53
5699 6322 7.287696 ACCACTAGAATAAAATTGCCCCTATTG 59.712 37.037 0.00 0.00 0.00 1.90
5719 6342 1.468054 GCAATGCACGGGTTCATTCTC 60.468 52.381 0.00 0.00 31.15 2.87
5720 6343 1.811965 CAATGCACGGGTTCATTCTCA 59.188 47.619 0.00 0.00 31.15 3.27
5721 6344 2.198827 ATGCACGGGTTCATTCTCAA 57.801 45.000 0.00 0.00 0.00 3.02
5723 6346 0.804989 GCACGGGTTCATTCTCAAGG 59.195 55.000 0.00 0.00 0.00 3.61
5724 6347 1.882352 GCACGGGTTCATTCTCAAGGT 60.882 52.381 0.00 0.00 0.00 3.50
5725 6348 1.806542 CACGGGTTCATTCTCAAGGTG 59.193 52.381 0.00 0.00 0.00 4.00
5726 6349 1.697432 ACGGGTTCATTCTCAAGGTGA 59.303 47.619 0.00 0.00 0.00 4.02
5727 6350 2.076863 CGGGTTCATTCTCAAGGTGAC 58.923 52.381 0.00 0.00 0.00 3.67
5728 6351 2.076863 GGGTTCATTCTCAAGGTGACG 58.923 52.381 0.00 0.00 0.00 4.35
5729 6352 2.289444 GGGTTCATTCTCAAGGTGACGA 60.289 50.000 0.00 0.00 0.00 4.20
5730 6353 2.737252 GGTTCATTCTCAAGGTGACGAC 59.263 50.000 0.00 0.00 0.00 4.34
5731 6354 2.347697 TCATTCTCAAGGTGACGACG 57.652 50.000 0.00 0.00 0.00 5.12
5732 6355 1.067846 TCATTCTCAAGGTGACGACGG 60.068 52.381 0.00 0.00 0.00 4.79
5733 6356 0.966920 ATTCTCAAGGTGACGACGGT 59.033 50.000 0.00 0.00 0.00 4.83
5734 6357 0.313043 TTCTCAAGGTGACGACGGTC 59.687 55.000 0.00 0.00 43.71 4.79
5735 6358 1.080705 CTCAAGGTGACGACGGTCC 60.081 63.158 1.91 0.00 42.73 4.46
5736 6359 2.430244 CAAGGTGACGACGGTCCG 60.430 66.667 10.48 10.48 42.73 4.79
5737 6360 2.595463 AAGGTGACGACGGTCCGA 60.595 61.111 20.51 0.00 42.73 4.55
5738 6361 2.195567 AAGGTGACGACGGTCCGAA 61.196 57.895 20.51 0.00 42.73 4.30
5739 6362 2.126580 GGTGACGACGGTCCGAAG 60.127 66.667 20.51 13.49 42.73 3.79
5740 6363 2.620112 GGTGACGACGGTCCGAAGA 61.620 63.158 20.51 0.00 42.73 2.87
5741 6364 1.283793 GTGACGACGGTCCGAAGAA 59.716 57.895 20.51 2.92 42.73 2.52
5742 6365 0.318107 GTGACGACGGTCCGAAGAAA 60.318 55.000 20.51 0.00 42.73 2.52
5743 6366 0.039798 TGACGACGGTCCGAAGAAAG 60.040 55.000 20.51 4.70 42.73 2.62
5744 6367 1.342796 GACGACGGTCCGAAGAAAGC 61.343 60.000 20.51 0.00 37.19 3.51
5745 6368 1.372499 CGACGGTCCGAAGAAAGCA 60.372 57.895 20.51 0.00 0.00 3.91
5746 6369 1.344942 CGACGGTCCGAAGAAAGCAG 61.345 60.000 20.51 0.00 0.00 4.24
5747 6370 1.627550 GACGGTCCGAAGAAAGCAGC 61.628 60.000 20.51 0.00 0.00 5.25
5748 6371 1.667830 CGGTCCGAAGAAAGCAGCA 60.668 57.895 4.91 0.00 0.00 4.41
5749 6372 1.227999 CGGTCCGAAGAAAGCAGCAA 61.228 55.000 4.91 0.00 0.00 3.91
5750 6373 0.238553 GGTCCGAAGAAAGCAGCAAC 59.761 55.000 0.00 0.00 0.00 4.17
5751 6374 0.238553 GTCCGAAGAAAGCAGCAACC 59.761 55.000 0.00 0.00 0.00 3.77
5752 6375 0.179032 TCCGAAGAAAGCAGCAACCA 60.179 50.000 0.00 0.00 0.00 3.67
5753 6376 0.667993 CCGAAGAAAGCAGCAACCAA 59.332 50.000 0.00 0.00 0.00 3.67
5754 6377 1.270550 CCGAAGAAAGCAGCAACCAAT 59.729 47.619 0.00 0.00 0.00 3.16
5755 6378 2.487762 CCGAAGAAAGCAGCAACCAATA 59.512 45.455 0.00 0.00 0.00 1.90
5756 6379 3.426695 CCGAAGAAAGCAGCAACCAATAG 60.427 47.826 0.00 0.00 0.00 1.73
5757 6380 3.426695 CGAAGAAAGCAGCAACCAATAGG 60.427 47.826 0.00 0.00 42.21 2.57
5758 6381 3.439857 AGAAAGCAGCAACCAATAGGA 57.560 42.857 0.00 0.00 38.69 2.94
5759 6382 3.084786 AGAAAGCAGCAACCAATAGGAC 58.915 45.455 0.00 0.00 38.69 3.85
5760 6383 2.887151 AAGCAGCAACCAATAGGACT 57.113 45.000 0.00 0.00 38.69 3.85
5761 6384 2.887151 AGCAGCAACCAATAGGACTT 57.113 45.000 0.00 0.00 38.69 3.01
5762 6385 3.160679 AGCAGCAACCAATAGGACTTT 57.839 42.857 0.00 0.00 38.69 2.66
5763 6386 3.084786 AGCAGCAACCAATAGGACTTTC 58.915 45.455 0.00 0.00 38.69 2.62
5764 6387 3.084786 GCAGCAACCAATAGGACTTTCT 58.915 45.455 0.00 0.00 38.69 2.52
5765 6388 3.507622 GCAGCAACCAATAGGACTTTCTT 59.492 43.478 0.00 0.00 38.69 2.52
5766 6389 4.700213 GCAGCAACCAATAGGACTTTCTTA 59.300 41.667 0.00 0.00 38.69 2.10
5767 6390 5.183140 GCAGCAACCAATAGGACTTTCTTAA 59.817 40.000 0.00 0.00 38.69 1.85
5768 6391 6.127619 GCAGCAACCAATAGGACTTTCTTAAT 60.128 38.462 0.00 0.00 38.69 1.40
5769 6392 7.475840 CAGCAACCAATAGGACTTTCTTAATC 58.524 38.462 0.00 0.00 38.69 1.75
5770 6393 6.603599 AGCAACCAATAGGACTTTCTTAATCC 59.396 38.462 0.00 0.00 38.69 3.01
5771 6394 6.603599 GCAACCAATAGGACTTTCTTAATCCT 59.396 38.462 0.45 0.45 45.12 3.24
5772 6395 7.201741 GCAACCAATAGGACTTTCTTAATCCTC 60.202 40.741 0.00 0.00 42.08 3.71
5773 6396 7.757242 ACCAATAGGACTTTCTTAATCCTCT 57.243 36.000 0.00 0.00 42.08 3.69
5774 6397 7.797062 ACCAATAGGACTTTCTTAATCCTCTC 58.203 38.462 0.00 0.00 42.08 3.20
5775 6398 7.625682 ACCAATAGGACTTTCTTAATCCTCTCT 59.374 37.037 0.00 0.00 42.08 3.10
5776 6399 8.490311 CCAATAGGACTTTCTTAATCCTCTCTT 58.510 37.037 0.00 0.00 42.08 2.85
5777 6400 9.541143 CAATAGGACTTTCTTAATCCTCTCTTC 57.459 37.037 0.00 0.00 42.08 2.87
5778 6401 6.553953 AGGACTTTCTTAATCCTCTCTTCC 57.446 41.667 0.00 0.00 38.55 3.46
5779 6402 6.268414 AGGACTTTCTTAATCCTCTCTTCCT 58.732 40.000 0.00 0.00 38.55 3.36
5780 6403 6.733334 AGGACTTTCTTAATCCTCTCTTCCTT 59.267 38.462 0.00 0.00 38.55 3.36
5781 6404 7.238723 AGGACTTTCTTAATCCTCTCTTCCTTT 59.761 37.037 0.00 0.00 38.55 3.11
5782 6405 7.551262 GGACTTTCTTAATCCTCTCTTCCTTTC 59.449 40.741 0.00 0.00 0.00 2.62
5783 6406 7.978925 ACTTTCTTAATCCTCTCTTCCTTTCA 58.021 34.615 0.00 0.00 0.00 2.69
5784 6407 8.100164 ACTTTCTTAATCCTCTCTTCCTTTCAG 58.900 37.037 0.00 0.00 0.00 3.02
5785 6408 7.798710 TTCTTAATCCTCTCTTCCTTTCAGA 57.201 36.000 0.00 0.00 0.00 3.27
5786 6409 7.798710 TCTTAATCCTCTCTTCCTTTCAGAA 57.201 36.000 0.00 0.00 0.00 3.02
5787 6410 8.207350 TCTTAATCCTCTCTTCCTTTCAGAAA 57.793 34.615 0.00 0.00 0.00 2.52
5788 6411 8.317679 TCTTAATCCTCTCTTCCTTTCAGAAAG 58.682 37.037 15.18 15.18 38.24 2.62
5789 6412 6.446909 AATCCTCTCTTCCTTTCAGAAAGT 57.553 37.500 19.58 0.00 36.77 2.66
5790 6413 5.896073 TCCTCTCTTCCTTTCAGAAAGTT 57.104 39.130 19.58 0.00 36.77 2.66
5791 6414 6.253946 TCCTCTCTTCCTTTCAGAAAGTTT 57.746 37.500 19.58 0.00 36.77 2.66
5792 6415 7.374975 TCCTCTCTTCCTTTCAGAAAGTTTA 57.625 36.000 19.58 4.36 36.77 2.01
5793 6416 7.445945 TCCTCTCTTCCTTTCAGAAAGTTTAG 58.554 38.462 19.58 13.51 36.77 1.85
5794 6417 6.148645 CCTCTCTTCCTTTCAGAAAGTTTAGC 59.851 42.308 19.58 0.00 36.77 3.09
5795 6418 6.831976 TCTCTTCCTTTCAGAAAGTTTAGCT 58.168 36.000 19.58 0.00 36.77 3.32
5796 6419 7.963532 TCTCTTCCTTTCAGAAAGTTTAGCTA 58.036 34.615 19.58 0.00 36.77 3.32
5797 6420 8.091449 TCTCTTCCTTTCAGAAAGTTTAGCTAG 58.909 37.037 19.58 8.95 36.77 3.42
5798 6421 7.736893 TCTTCCTTTCAGAAAGTTTAGCTAGT 58.263 34.615 19.58 0.00 36.77 2.57
5799 6422 8.867097 TCTTCCTTTCAGAAAGTTTAGCTAGTA 58.133 33.333 19.58 0.00 36.77 1.82
5800 6423 9.660180 CTTCCTTTCAGAAAGTTTAGCTAGTAT 57.340 33.333 19.58 0.00 36.77 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 16 4.472691 TTGAGAGACGAAAATGCACTTG 57.527 40.909 0.00 0.00 0.00 3.16
30 33 6.296026 AGCTACACTTTGTGGTAAATTGAGA 58.704 36.000 2.72 0.00 37.94 3.27
95 99 7.508296 GGGACTAACTATACCTGGTATTGAGAA 59.492 40.741 27.42 14.58 30.79 2.87
96 100 7.008941 GGGACTAACTATACCTGGTATTGAGA 58.991 42.308 27.42 16.32 30.79 3.27
127 133 3.246699 CGTGTTTGACTGTTGAATACCGT 59.753 43.478 0.00 0.00 0.00 4.83
196 202 2.642427 TGACATGCGACTTTATGCCAT 58.358 42.857 0.00 0.00 0.00 4.40
204 210 3.599730 TCTCTCAATGACATGCGACTT 57.400 42.857 0.00 0.00 0.00 3.01
283 303 5.308497 TGGATATTTAAAGCGGGTGGAGATA 59.692 40.000 0.00 0.00 0.00 1.98
285 305 3.456644 TGGATATTTAAAGCGGGTGGAGA 59.543 43.478 0.00 0.00 0.00 3.71
329 364 2.226330 CTCCTAGAGTAGCATCGCAGT 58.774 52.381 0.00 0.00 0.00 4.40
385 422 5.367945 TCCTTACCCCAACTATCATGTTC 57.632 43.478 0.00 0.00 0.00 3.18
421 460 5.348724 CCCATGTCGGTTTAGATTCGATATG 59.651 44.000 12.40 12.40 45.42 1.78
426 465 2.210116 CCCCATGTCGGTTTAGATTCG 58.790 52.381 0.00 0.00 0.00 3.34
427 466 2.171870 TCCCCCATGTCGGTTTAGATTC 59.828 50.000 0.00 0.00 0.00 2.52
428 467 2.172717 CTCCCCCATGTCGGTTTAGATT 59.827 50.000 0.00 0.00 0.00 2.40
513 554 3.181482 TGTTGCACGGTTTTGATCACATT 60.181 39.130 0.00 0.00 0.00 2.71
532 573 6.166982 TCAAATCCGGTTTTGACTTTTTGTT 58.833 32.000 28.67 0.00 39.91 2.83
609 651 2.099592 CCACATCTTGTGCAACTTGTGT 59.900 45.455 15.35 3.55 46.51 3.72
610 652 2.099592 ACCACATCTTGTGCAACTTGTG 59.900 45.455 2.09 12.10 46.51 3.33
611 653 2.358898 GACCACATCTTGTGCAACTTGT 59.641 45.455 2.09 0.00 46.51 3.16
612 654 2.358582 TGACCACATCTTGTGCAACTTG 59.641 45.455 2.09 0.00 46.51 3.16
616 658 3.194329 TGTTTTGACCACATCTTGTGCAA 59.806 39.130 2.09 0.30 46.51 4.08
618 660 3.435105 TGTTTTGACCACATCTTGTGC 57.565 42.857 2.09 0.00 46.51 4.57
620 662 5.126869 TGTCATTGTTTTGACCACATCTTGT 59.873 36.000 2.43 0.00 44.37 3.16
652 696 4.582656 TCCTCGGTCAAATCATGTTTTTGT 59.417 37.500 17.41 0.00 35.90 2.83
661 705 3.517901 AGTGGTATTCCTCGGTCAAATCA 59.482 43.478 0.00 0.00 33.02 2.57
663 707 4.441079 CGTAGTGGTATTCCTCGGTCAAAT 60.441 45.833 0.00 0.00 33.02 2.32
725 770 0.611714 TTCGTCCTTCAACTAGGGGC 59.388 55.000 0.00 0.00 35.90 5.80
727 772 1.900486 ACCTTCGTCCTTCAACTAGGG 59.100 52.381 0.00 0.00 35.90 3.53
728 773 3.679824 AACCTTCGTCCTTCAACTAGG 57.320 47.619 0.00 0.00 36.59 3.02
729 774 7.486802 TTTTTAACCTTCGTCCTTCAACTAG 57.513 36.000 0.00 0.00 0.00 2.57
759 1088 1.084289 CCTTTCGTCCCGGAACATTC 58.916 55.000 0.73 0.00 0.00 2.67
762 1091 2.031465 GCCTTTCGTCCCGGAACA 59.969 61.111 0.73 0.00 0.00 3.18
763 1092 2.031465 TGCCTTTCGTCCCGGAAC 59.969 61.111 0.73 0.00 0.00 3.62
766 1095 3.047877 GTGTGCCTTTCGTCCCGG 61.048 66.667 0.00 0.00 0.00 5.73
767 1096 1.566018 GAAGTGTGCCTTTCGTCCCG 61.566 60.000 0.00 0.00 32.03 5.14
768 1097 1.566018 CGAAGTGTGCCTTTCGTCCC 61.566 60.000 0.00 0.00 32.03 4.46
772 1101 1.626654 ATCGCGAAGTGTGCCTTTCG 61.627 55.000 15.24 2.55 40.08 3.46
778 1107 0.025513 CAGCTAATCGCGAAGTGTGC 59.974 55.000 15.24 13.51 45.59 4.57
786 1115 0.179111 TTGTCCCTCAGCTAATCGCG 60.179 55.000 0.00 0.00 45.59 5.87
795 1152 7.661847 AGAGTAAAGTACATTTTTGTCCCTCAG 59.338 37.037 0.00 0.00 32.01 3.35
901 1318 3.560068 TGCGGTTCTTCAGTTTCTCTTTC 59.440 43.478 0.00 0.00 0.00 2.62
987 1404 1.425066 AGCAACTCTGGGTGGATGAAA 59.575 47.619 0.00 0.00 0.00 2.69
989 1406 0.615331 GAGCAACTCTGGGTGGATGA 59.385 55.000 0.00 0.00 0.00 2.92
996 1416 1.605710 CTGTGTTTGAGCAACTCTGGG 59.394 52.381 0.00 0.00 36.21 4.45
1075 1501 2.249535 CGCCGGAGATGCCATCTTG 61.250 63.158 8.93 4.88 40.38 3.02
1102 1528 3.136123 CCTCCGACGGCGTCCTTA 61.136 66.667 31.86 17.28 35.23 2.69
1435 1861 3.144657 TCAGCACTCACACATCCAAAT 57.855 42.857 0.00 0.00 0.00 2.32
1458 1884 0.976073 TCCAGGAACCCTAAGCCTCG 60.976 60.000 0.00 0.00 29.64 4.63
1459 1885 0.542333 GTCCAGGAACCCTAAGCCTC 59.458 60.000 0.00 0.00 29.64 4.70
1460 1886 1.265454 CGTCCAGGAACCCTAAGCCT 61.265 60.000 0.00 0.00 29.64 4.58
1544 1971 3.582647 TCCAGAAGCCACTAACAGATCAA 59.417 43.478 0.00 0.00 0.00 2.57
1621 2055 4.900635 AACTTGAATCACAACACTCCAC 57.099 40.909 0.00 0.00 34.56 4.02
1700 2139 6.077197 CGAAATGAGCGAAATCAAACAGTAA 58.923 36.000 0.00 0.00 31.76 2.24
1702 2141 4.024048 ACGAAATGAGCGAAATCAAACAGT 60.024 37.500 0.00 0.00 31.76 3.55
1723 2162 8.547091 AATCAATTAATAATGCGACAGAAACG 57.453 30.769 0.00 0.00 0.00 3.60
1850 2292 2.452505 AGTCCTGCAGGAGTAGAAGAC 58.547 52.381 36.83 22.52 45.66 3.01
2021 2463 5.076182 TCTCTTCATTGGCAATAAACACCA 58.924 37.500 13.23 0.00 0.00 4.17
2028 2470 6.962686 CGATGAATTCTCTTCATTGGCAATA 58.037 36.000 13.23 0.00 39.08 1.90
2076 2518 2.886523 CAGCAAACCATCCTTGACAAGA 59.113 45.455 16.99 3.48 0.00 3.02
2178 2620 5.185828 ACCAACTAAATCAGCAAGAATTCCC 59.814 40.000 0.65 0.00 0.00 3.97
2205 2647 5.452078 AAACCTTCACAATACCACACATG 57.548 39.130 0.00 0.00 0.00 3.21
2480 3004 6.295916 CCCTCCGCTTCACTATAATTATTCCT 60.296 42.308 2.68 0.00 0.00 3.36
2545 3069 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
2546 3070 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
2547 3071 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
2548 3072 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
2549 3073 5.449314 CGCTCTTATATTATGAGACGGAGGG 60.449 48.000 0.00 0.00 33.20 4.30
2550 3074 5.124138 ACGCTCTTATATTATGAGACGGAGG 59.876 44.000 16.71 3.20 35.72 4.30
2551 3075 6.184580 ACGCTCTTATATTATGAGACGGAG 57.815 41.667 16.71 6.33 35.72 4.63
2552 3076 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
2553 3077 7.639162 AAAACGCTCTTATATTATGAGACGG 57.361 36.000 16.71 7.11 35.72 4.79
2575 3099 7.450124 TTTTGACACTACACTGGTGTAAAAA 57.550 32.000 14.51 14.51 46.81 1.94
2576 3100 7.450124 TTTTTGACACTACACTGGTGTAAAA 57.550 32.000 13.50 9.45 46.23 1.52
2577 3101 7.476667 CATTTTTGACACTACACTGGTGTAAA 58.523 34.615 13.50 6.01 46.23 2.01
2578 3102 6.459024 GCATTTTTGACACTACACTGGTGTAA 60.459 38.462 13.50 0.00 46.23 2.41
2579 3103 5.008217 GCATTTTTGACACTACACTGGTGTA 59.992 40.000 12.21 12.21 46.23 2.90
2581 3105 4.036734 AGCATTTTTGACACTACACTGGTG 59.963 41.667 0.00 0.00 40.19 4.17
2582 3106 4.207165 AGCATTTTTGACACTACACTGGT 58.793 39.130 0.00 0.00 0.00 4.00
2583 3107 4.516698 AGAGCATTTTTGACACTACACTGG 59.483 41.667 0.00 0.00 0.00 4.00
2584 3108 5.679734 AGAGCATTTTTGACACTACACTG 57.320 39.130 0.00 0.00 0.00 3.66
2585 3109 7.986085 ATAAGAGCATTTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
2590 3114 8.612619 CCGTAATATAAGAGCATTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2591 3115 7.855904 CCCGTAATATAAGAGCATTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2592 3116 7.771361 TCCCGTAATATAAGAGCATTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2593 3117 8.068380 GTCCCGTAATATAAGAGCATTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2594 3118 7.771361 TGTCCCGTAATATAAGAGCATTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
2595 3119 7.925993 TGTCCCGTAATATAAGAGCATTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
2596 3120 7.990886 TCTGTCCCGTAATATAAGAGCATTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2597 3121 7.506114 TCTGTCCCGTAATATAAGAGCATTTT 58.494 34.615 0.00 0.00 0.00 1.82
2598 3122 7.062749 TCTGTCCCGTAATATAAGAGCATTT 57.937 36.000 0.00 0.00 0.00 2.32
2599 3123 6.295349 CCTCTGTCCCGTAATATAAGAGCATT 60.295 42.308 0.00 0.00 0.00 3.56
2600 3124 5.186021 CCTCTGTCCCGTAATATAAGAGCAT 59.814 44.000 0.00 0.00 0.00 3.79
2601 3125 4.523173 CCTCTGTCCCGTAATATAAGAGCA 59.477 45.833 0.00 0.00 0.00 4.26
2602 3126 4.082136 CCCTCTGTCCCGTAATATAAGAGC 60.082 50.000 0.00 0.00 0.00 4.09
2603 3127 5.322754 TCCCTCTGTCCCGTAATATAAGAG 58.677 45.833 0.00 0.00 0.00 2.85
2604 3128 5.163012 ACTCCCTCTGTCCCGTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
2605 3129 5.078256 ACTCCCTCTGTCCCGTAATATAAG 58.922 45.833 0.00 0.00 0.00 1.73
2606 3130 5.070823 ACTCCCTCTGTCCCGTAATATAA 57.929 43.478 0.00 0.00 0.00 0.98
2607 3131 4.736611 ACTCCCTCTGTCCCGTAATATA 57.263 45.455 0.00 0.00 0.00 0.86
2608 3132 3.614568 ACTCCCTCTGTCCCGTAATAT 57.385 47.619 0.00 0.00 0.00 1.28
2609 3133 3.461085 ACTACTCCCTCTGTCCCGTAATA 59.539 47.826 0.00 0.00 0.00 0.98
2610 3134 2.244252 ACTACTCCCTCTGTCCCGTAAT 59.756 50.000 0.00 0.00 0.00 1.89
2611 3135 1.637553 ACTACTCCCTCTGTCCCGTAA 59.362 52.381 0.00 0.00 0.00 3.18
2612 3136 1.293062 ACTACTCCCTCTGTCCCGTA 58.707 55.000 0.00 0.00 0.00 4.02
2613 3137 0.408700 AACTACTCCCTCTGTCCCGT 59.591 55.000 0.00 0.00 0.00 5.28
2614 3138 0.818296 CAACTACTCCCTCTGTCCCG 59.182 60.000 0.00 0.00 0.00 5.14
2615 3139 0.537653 GCAACTACTCCCTCTGTCCC 59.462 60.000 0.00 0.00 0.00 4.46
2616 3140 1.562783 AGCAACTACTCCCTCTGTCC 58.437 55.000 0.00 0.00 0.00 4.02
2617 3141 3.622630 TCTAGCAACTACTCCCTCTGTC 58.377 50.000 0.00 0.00 0.00 3.51
2618 3142 3.741245 TCTAGCAACTACTCCCTCTGT 57.259 47.619 0.00 0.00 0.00 3.41
2619 3143 6.322712 ACTTATTCTAGCAACTACTCCCTCTG 59.677 42.308 0.00 0.00 0.00 3.35
2620 3144 6.436890 ACTTATTCTAGCAACTACTCCCTCT 58.563 40.000 0.00 0.00 0.00 3.69
2621 3145 6.718522 ACTTATTCTAGCAACTACTCCCTC 57.281 41.667 0.00 0.00 0.00 4.30
2622 3146 7.201929 GCTAACTTATTCTAGCAACTACTCCCT 60.202 40.741 0.00 0.00 40.27 4.20
2623 3147 6.924612 GCTAACTTATTCTAGCAACTACTCCC 59.075 42.308 0.00 0.00 40.27 4.30
2624 3148 7.490000 TGCTAACTTATTCTAGCAACTACTCC 58.510 38.462 1.42 0.00 45.70 3.85
3289 3825 3.703001 TCTAAGAACTTCAGGGCAAGG 57.297 47.619 0.00 0.00 0.00 3.61
3416 3955 6.105397 AGCATTCCACATTCAATTTCAGTT 57.895 33.333 0.00 0.00 0.00 3.16
3475 4044 6.265196 AGTGCAAGTCCATCACATTTTCTTTA 59.735 34.615 0.00 0.00 33.44 1.85
3800 4369 8.043710 CCATCCAGGAGAAGGAATAATACATAC 58.956 40.741 0.00 0.00 41.22 2.39
4214 4783 3.820557 CAAACTCCCGGTGATGGAATAT 58.179 45.455 0.00 0.00 0.00 1.28
4282 4851 6.467047 CACAGATATTGCATCAAAAAGACGAC 59.533 38.462 0.00 0.00 0.00 4.34
4440 5009 7.904558 TCTAGGAACATGTTATCTGACTGAT 57.095 36.000 11.95 0.19 39.11 2.90
4441 5010 7.904558 ATCTAGGAACATGTTATCTGACTGA 57.095 36.000 11.95 9.76 0.00 3.41
4452 5021 4.403432 CCCAATGCAAATCTAGGAACATGT 59.597 41.667 0.00 0.00 0.00 3.21
4478 5047 6.152932 AGATAACCGAACGCTAAATTAGGA 57.847 37.500 1.88 0.00 0.00 2.94
4488 5057 1.641577 AAGCTGAGATAACCGAACGC 58.358 50.000 0.00 0.00 0.00 4.84
4536 5105 4.065321 AGGTAGCATTGTATGAGCACTC 57.935 45.455 0.00 0.00 0.00 3.51
4692 5265 7.557719 AGGTGTCCAATAAGGTAATCTTTCATG 59.442 37.037 0.00 0.00 39.02 3.07
4745 5318 8.677148 TGATTTAGACTAAGCTCAAAACACTT 57.323 30.769 6.96 0.00 0.00 3.16
4760 5333 8.637196 TCATGGTACGAGATATGATTTAGACT 57.363 34.615 0.00 0.00 0.00 3.24
4798 5371 7.971455 ACAAGTTCTAATTCTATGCGGTAAAC 58.029 34.615 0.00 0.00 0.00 2.01
4813 5386 5.163602 ACGTTCCAATGCAAACAAGTTCTAA 60.164 36.000 0.00 0.00 0.00 2.10
4814 5387 4.336993 ACGTTCCAATGCAAACAAGTTCTA 59.663 37.500 0.00 0.00 0.00 2.10
4816 5389 3.443976 ACGTTCCAATGCAAACAAGTTC 58.556 40.909 0.00 0.00 0.00 3.01
4817 5390 3.518634 ACGTTCCAATGCAAACAAGTT 57.481 38.095 0.00 0.00 0.00 2.66
4818 5391 3.518634 AACGTTCCAATGCAAACAAGT 57.481 38.095 0.00 0.00 0.00 3.16
4819 5392 4.328440 TCAAAACGTTCCAATGCAAACAAG 59.672 37.500 0.00 0.00 0.00 3.16
4820 5393 4.245660 TCAAAACGTTCCAATGCAAACAA 58.754 34.783 0.00 0.00 0.00 2.83
4864 5460 5.959652 TTTGTCGATATGTATGGTTCACG 57.040 39.130 0.00 0.00 0.00 4.35
5003 5620 5.523916 GCTACCTAAATTCTGCATCGAGAAA 59.476 40.000 0.00 0.00 35.60 2.52
5032 5649 0.753867 TGTACCAGTTGACTCGGCAA 59.246 50.000 0.00 0.00 0.00 4.52
5139 5757 7.390996 TCGGTCAAACCTAATATGCAAAGTAAA 59.609 33.333 0.00 0.00 35.66 2.01
5141 5759 6.408035 TCGGTCAAACCTAATATGCAAAGTA 58.592 36.000 0.00 0.00 35.66 2.24
5142 5760 5.250200 TCGGTCAAACCTAATATGCAAAGT 58.750 37.500 0.00 0.00 35.66 2.66
5143 5761 5.811399 TCGGTCAAACCTAATATGCAAAG 57.189 39.130 0.00 0.00 35.66 2.77
5144 5762 5.708230 ACTTCGGTCAAACCTAATATGCAAA 59.292 36.000 0.00 0.00 35.66 3.68
5145 5763 5.250200 ACTTCGGTCAAACCTAATATGCAA 58.750 37.500 0.00 0.00 35.66 4.08
5146 5764 4.839121 ACTTCGGTCAAACCTAATATGCA 58.161 39.130 0.00 0.00 35.66 3.96
5147 5765 5.405331 GACTTCGGTCAAACCTAATATGC 57.595 43.478 0.00 0.00 43.91 3.14
5160 5778 7.043656 CCAACTTTACAAAATTTGACTTCGGTC 60.044 37.037 13.19 0.00 44.66 4.79
5161 5779 6.754675 CCAACTTTACAAAATTTGACTTCGGT 59.245 34.615 13.19 1.22 0.00 4.69
5162 5780 6.975772 TCCAACTTTACAAAATTTGACTTCGG 59.024 34.615 13.19 4.28 0.00 4.30
5163 5781 7.043656 GGTCCAACTTTACAAAATTTGACTTCG 60.044 37.037 13.19 0.00 0.00 3.79
5164 5782 7.762159 TGGTCCAACTTTACAAAATTTGACTTC 59.238 33.333 13.19 0.00 0.00 3.01
5165 5783 7.616313 TGGTCCAACTTTACAAAATTTGACTT 58.384 30.769 13.19 0.00 0.00 3.01
5166 5784 7.176589 TGGTCCAACTTTACAAAATTTGACT 57.823 32.000 13.19 0.00 0.00 3.41
5167 5785 7.547722 ACTTGGTCCAACTTTACAAAATTTGAC 59.452 33.333 13.19 0.00 0.00 3.18
5168 5786 7.616313 ACTTGGTCCAACTTTACAAAATTTGA 58.384 30.769 13.19 0.00 0.00 2.69
5169 5787 7.841915 ACTTGGTCCAACTTTACAAAATTTG 57.158 32.000 0.00 3.89 0.00 2.32
5170 5788 8.856153 AAACTTGGTCCAACTTTACAAAATTT 57.144 26.923 0.00 0.00 0.00 1.82
5174 5792 9.629878 TCTATAAACTTGGTCCAACTTTACAAA 57.370 29.630 14.90 6.76 0.00 2.83
5175 5793 9.280174 CTCTATAAACTTGGTCCAACTTTACAA 57.720 33.333 14.90 8.46 0.00 2.41
5176 5794 8.653191 TCTCTATAAACTTGGTCCAACTTTACA 58.347 33.333 14.90 6.58 0.00 2.41
5177 5795 9.498176 TTCTCTATAAACTTGGTCCAACTTTAC 57.502 33.333 14.90 0.00 0.00 2.01
5179 5797 8.990163 TTTCTCTATAAACTTGGTCCAACTTT 57.010 30.769 12.24 12.24 0.00 2.66
5180 5798 8.990163 TTTTCTCTATAAACTTGGTCCAACTT 57.010 30.769 0.00 0.00 0.00 2.66
5181 5799 8.990163 TTTTTCTCTATAAACTTGGTCCAACT 57.010 30.769 0.00 0.00 0.00 3.16
5281 5899 9.575783 AGCTTTGACAAAGTTTTATAAACGAAA 57.424 25.926 24.98 0.00 40.64 3.46
5282 5900 9.228636 GAGCTTTGACAAAGTTTTATAAACGAA 57.771 29.630 24.98 0.00 40.64 3.85
5283 5901 8.399425 TGAGCTTTGACAAAGTTTTATAAACGA 58.601 29.630 24.98 0.34 40.64 3.85
5284 5902 8.469125 GTGAGCTTTGACAAAGTTTTATAAACG 58.531 33.333 24.98 1.21 40.64 3.60
5285 5903 9.296400 TGTGAGCTTTGACAAAGTTTTATAAAC 57.704 29.630 24.98 14.08 40.64 2.01
5286 5904 9.862371 TTGTGAGCTTTGACAAAGTTTTATAAA 57.138 25.926 24.98 11.32 40.64 1.40
5287 5905 9.862371 TTTGTGAGCTTTGACAAAGTTTTATAA 57.138 25.926 24.98 15.12 40.64 0.98
5312 5930 9.686683 ATATTAACTATGGTCAAAGTCAAGCTT 57.313 29.630 0.00 0.00 39.52 3.74
5351 5969 8.456471 GCTCATTTTTAATACTCCCTACGTTTT 58.544 33.333 0.00 0.00 0.00 2.43
5352 5970 7.827729 AGCTCATTTTTAATACTCCCTACGTTT 59.172 33.333 0.00 0.00 0.00 3.60
5353 5971 7.336396 AGCTCATTTTTAATACTCCCTACGTT 58.664 34.615 0.00 0.00 0.00 3.99
5354 5972 6.885922 AGCTCATTTTTAATACTCCCTACGT 58.114 36.000 0.00 0.00 0.00 3.57
5355 5973 7.280205 ACAAGCTCATTTTTAATACTCCCTACG 59.720 37.037 0.00 0.00 0.00 3.51
5356 5974 8.507524 ACAAGCTCATTTTTAATACTCCCTAC 57.492 34.615 0.00 0.00 0.00 3.18
5357 5975 8.956426 CAACAAGCTCATTTTTAATACTCCCTA 58.044 33.333 0.00 0.00 0.00 3.53
5358 5976 7.093771 CCAACAAGCTCATTTTTAATACTCCCT 60.094 37.037 0.00 0.00 0.00 4.20
5359 5977 7.035612 CCAACAAGCTCATTTTTAATACTCCC 58.964 38.462 0.00 0.00 0.00 4.30
5360 5978 7.602753 ACCAACAAGCTCATTTTTAATACTCC 58.397 34.615 0.00 0.00 0.00 3.85
5361 5979 9.476202 AAACCAACAAGCTCATTTTTAATACTC 57.524 29.630 0.00 0.00 0.00 2.59
5364 5982 9.418045 GCTAAACCAACAAGCTCATTTTTAATA 57.582 29.630 0.00 0.00 33.40 0.98
5365 5983 8.150296 AGCTAAACCAACAAGCTCATTTTTAAT 58.850 29.630 0.00 0.00 42.89 1.40
5366 5984 7.496747 AGCTAAACCAACAAGCTCATTTTTAA 58.503 30.769 0.00 0.00 42.89 1.52
5367 5985 7.049799 AGCTAAACCAACAAGCTCATTTTTA 57.950 32.000 0.00 0.00 42.89 1.52
5368 5986 5.917462 AGCTAAACCAACAAGCTCATTTTT 58.083 33.333 0.00 0.00 42.89 1.94
5369 5987 5.535753 AGCTAAACCAACAAGCTCATTTT 57.464 34.783 0.00 0.00 42.89 1.82
5370 5988 5.535753 AAGCTAAACCAACAAGCTCATTT 57.464 34.783 0.00 0.00 45.61 2.32
5371 5989 5.068987 TGAAAGCTAAACCAACAAGCTCATT 59.931 36.000 0.00 0.00 45.61 2.57
5372 5990 4.584325 TGAAAGCTAAACCAACAAGCTCAT 59.416 37.500 0.00 0.00 45.61 2.90
5373 5991 3.951037 TGAAAGCTAAACCAACAAGCTCA 59.049 39.130 0.00 0.00 45.61 4.26
5382 6000 5.974751 GTGAAAAACGATGAAAGCTAAACCA 59.025 36.000 0.00 0.00 0.00 3.67
5552 6170 9.401873 GTTGACTTTGTTGTTTTACTACAAGTT 57.598 29.630 6.86 0.32 42.71 2.66
5558 6176 9.005777 ACTTGAGTTGACTTTGTTGTTTTACTA 57.994 29.630 0.00 0.00 0.00 1.82
5622 6242 7.395190 TGAAATTGAGATATGTTGTGGGAAG 57.605 36.000 0.00 0.00 0.00 3.46
5624 6244 5.357878 GCTGAAATTGAGATATGTTGTGGGA 59.642 40.000 0.00 0.00 0.00 4.37
5647 6267 6.073873 CCGATGTAGATTTTCTCTGATTGAGC 60.074 42.308 0.00 0.00 42.38 4.26
5654 6274 4.806247 GTGGTCCGATGTAGATTTTCTCTG 59.194 45.833 0.00 0.00 35.28 3.35
5656 6276 5.012328 AGTGGTCCGATGTAGATTTTCTC 57.988 43.478 0.00 0.00 0.00 2.87
5658 6278 6.145338 TCTAGTGGTCCGATGTAGATTTTC 57.855 41.667 0.00 0.00 0.00 2.29
5670 6293 4.036380 GGGCAATTTTATTCTAGTGGTCCG 59.964 45.833 0.00 0.00 0.00 4.79
5694 6317 1.472082 TGAACCCGTGCATTGCAATAG 59.528 47.619 13.94 7.98 41.47 1.73
5696 6319 0.896923 ATGAACCCGTGCATTGCAAT 59.103 45.000 13.94 5.99 41.47 3.56
5699 6322 0.527565 AGAATGAACCCGTGCATTGC 59.472 50.000 5.76 0.46 35.05 3.56
5719 6342 2.410638 TTCGGACCGTCGTCACCTTG 62.411 60.000 14.79 0.00 41.13 3.61
5720 6343 2.138656 CTTCGGACCGTCGTCACCTT 62.139 60.000 14.79 0.00 41.13 3.50
5721 6344 2.595463 TTCGGACCGTCGTCACCT 60.595 61.111 14.79 0.00 41.13 4.00
5723 6346 0.318107 TTTCTTCGGACCGTCGTCAC 60.318 55.000 14.79 0.00 41.13 3.67
5724 6347 0.039798 CTTTCTTCGGACCGTCGTCA 60.040 55.000 14.79 0.00 41.13 4.35
5725 6348 1.342796 GCTTTCTTCGGACCGTCGTC 61.343 60.000 14.79 0.00 38.38 4.20
5726 6349 1.372623 GCTTTCTTCGGACCGTCGT 60.373 57.895 14.79 0.00 0.00 4.34
5727 6350 1.344942 CTGCTTTCTTCGGACCGTCG 61.345 60.000 14.79 6.31 0.00 5.12
5728 6351 1.627550 GCTGCTTTCTTCGGACCGTC 61.628 60.000 14.79 0.00 0.00 4.79
5729 6352 1.668151 GCTGCTTTCTTCGGACCGT 60.668 57.895 14.79 0.00 0.00 4.83
5730 6353 1.227999 TTGCTGCTTTCTTCGGACCG 61.228 55.000 7.84 7.84 0.00 4.79
5731 6354 0.238553 GTTGCTGCTTTCTTCGGACC 59.761 55.000 0.00 0.00 0.00 4.46
5732 6355 0.238553 GGTTGCTGCTTTCTTCGGAC 59.761 55.000 0.00 0.00 0.00 4.79
5733 6356 0.179032 TGGTTGCTGCTTTCTTCGGA 60.179 50.000 0.00 0.00 0.00 4.55
5734 6357 0.667993 TTGGTTGCTGCTTTCTTCGG 59.332 50.000 0.00 0.00 0.00 4.30
5735 6358 2.712057 ATTGGTTGCTGCTTTCTTCG 57.288 45.000 0.00 0.00 0.00 3.79
5736 6359 3.758554 TCCTATTGGTTGCTGCTTTCTTC 59.241 43.478 0.00 0.00 34.23 2.87
5737 6360 3.507622 GTCCTATTGGTTGCTGCTTTCTT 59.492 43.478 0.00 0.00 34.23 2.52
5738 6361 3.084786 GTCCTATTGGTTGCTGCTTTCT 58.915 45.455 0.00 0.00 34.23 2.52
5739 6362 3.084786 AGTCCTATTGGTTGCTGCTTTC 58.915 45.455 0.00 0.00 34.23 2.62
5740 6363 3.160679 AGTCCTATTGGTTGCTGCTTT 57.839 42.857 0.00 0.00 34.23 3.51
5741 6364 2.887151 AGTCCTATTGGTTGCTGCTT 57.113 45.000 0.00 0.00 34.23 3.91
5742 6365 2.887151 AAGTCCTATTGGTTGCTGCT 57.113 45.000 0.00 0.00 34.23 4.24
5743 6366 3.084786 AGAAAGTCCTATTGGTTGCTGC 58.915 45.455 0.00 0.00 34.23 5.25
5744 6367 6.817765 TTAAGAAAGTCCTATTGGTTGCTG 57.182 37.500 0.00 0.00 34.23 4.41
5745 6368 6.603599 GGATTAAGAAAGTCCTATTGGTTGCT 59.396 38.462 0.00 0.00 34.23 3.91
5746 6369 6.603599 AGGATTAAGAAAGTCCTATTGGTTGC 59.396 38.462 0.00 0.00 40.49 4.17
5747 6370 8.049721 AGAGGATTAAGAAAGTCCTATTGGTTG 58.950 37.037 0.00 0.00 42.27 3.77
5748 6371 8.164057 AGAGGATTAAGAAAGTCCTATTGGTT 57.836 34.615 0.00 0.00 42.27 3.67
5749 6372 7.625682 AGAGAGGATTAAGAAAGTCCTATTGGT 59.374 37.037 0.00 0.00 42.27 3.67
5750 6373 8.028652 AGAGAGGATTAAGAAAGTCCTATTGG 57.971 38.462 0.00 0.00 42.27 3.16
5751 6374 9.541143 GAAGAGAGGATTAAGAAAGTCCTATTG 57.459 37.037 0.00 0.00 42.27 1.90
5752 6375 8.710239 GGAAGAGAGGATTAAGAAAGTCCTATT 58.290 37.037 0.00 0.00 42.27 1.73
5753 6376 8.071229 AGGAAGAGAGGATTAAGAAAGTCCTAT 58.929 37.037 0.00 0.00 42.27 2.57
5754 6377 7.423341 AGGAAGAGAGGATTAAGAAAGTCCTA 58.577 38.462 0.00 0.00 42.27 2.94
5755 6378 6.268414 AGGAAGAGAGGATTAAGAAAGTCCT 58.732 40.000 0.00 0.00 44.80 3.85
5756 6379 6.553953 AGGAAGAGAGGATTAAGAAAGTCC 57.446 41.667 0.00 0.00 0.00 3.85
5757 6380 8.097662 TGAAAGGAAGAGAGGATTAAGAAAGTC 58.902 37.037 0.00 0.00 0.00 3.01
5758 6381 7.978925 TGAAAGGAAGAGAGGATTAAGAAAGT 58.021 34.615 0.00 0.00 0.00 2.66
5759 6382 8.317679 TCTGAAAGGAAGAGAGGATTAAGAAAG 58.682 37.037 0.00 0.00 0.00 2.62
5760 6383 8.207350 TCTGAAAGGAAGAGAGGATTAAGAAA 57.793 34.615 0.00 0.00 0.00 2.52
5761 6384 7.798710 TCTGAAAGGAAGAGAGGATTAAGAA 57.201 36.000 0.00 0.00 0.00 2.52
5762 6385 7.798710 TTCTGAAAGGAAGAGAGGATTAAGA 57.201 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.