Multiple sequence alignment - TraesCS6D01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G250600 chr6D 100.000 4000 0 0 1 4000 354367943 354371942 0.000000e+00 7387
1 TraesCS6D01G250600 chr6D 89.087 953 83 10 3055 4000 293736436 293735498 0.000000e+00 1164
2 TraesCS6D01G250600 chr6D 82.500 160 20 6 1599 1757 436716635 436716483 2.510000e-27 134
3 TraesCS6D01G250600 chr6B 90.851 2820 120 37 308 3060 523882327 523879579 0.000000e+00 3651
4 TraesCS6D01G250600 chr6A 89.633 2701 135 53 431 3060 487772011 487769385 0.000000e+00 3302
5 TraesCS6D01G250600 chr6A 92.777 443 17 7 2 441 487774456 487774026 9.440000e-176 627
6 TraesCS6D01G250600 chr2D 92.122 952 66 5 3055 4000 566754966 566755914 0.000000e+00 1334
7 TraesCS6D01G250600 chr2D 84.533 653 82 11 1143 1787 557684086 557684727 2.620000e-176 628
8 TraesCS6D01G250600 chr3D 89.916 952 82 11 3054 4000 45022862 45023804 0.000000e+00 1214
9 TraesCS6D01G250600 chr3D 89.430 965 74 14 3057 4000 589773177 589772220 0.000000e+00 1192
10 TraesCS6D01G250600 chr4D 89.413 954 82 12 3055 3999 15324064 15325007 0.000000e+00 1184
11 TraesCS6D01G250600 chr4A 89.346 948 80 15 3064 4000 210939883 210938946 0.000000e+00 1171
12 TraesCS6D01G250600 chr1A 89.346 948 80 15 3064 4000 6930728 6929791 0.000000e+00 1171
13 TraesCS6D01G250600 chrUn 89.241 948 81 15 3064 4000 83556203 83555266 0.000000e+00 1166
14 TraesCS6D01G250600 chr5A 89.241 948 81 15 3064 4000 675471853 675470916 0.000000e+00 1166
15 TraesCS6D01G250600 chr2A 84.733 655 80 11 1143 1787 698092606 698093250 4.360000e-179 638
16 TraesCS6D01G250600 chr2B 84.122 655 84 11 1143 1787 665858218 665858862 2.040000e-172 616


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G250600 chr6D 354367943 354371942 3999 False 7387.0 7387 100.000 1 4000 1 chr6D.!!$F1 3999
1 TraesCS6D01G250600 chr6D 293735498 293736436 938 True 1164.0 1164 89.087 3055 4000 1 chr6D.!!$R1 945
2 TraesCS6D01G250600 chr6B 523879579 523882327 2748 True 3651.0 3651 90.851 308 3060 1 chr6B.!!$R1 2752
3 TraesCS6D01G250600 chr6A 487769385 487774456 5071 True 1964.5 3302 91.205 2 3060 2 chr6A.!!$R1 3058
4 TraesCS6D01G250600 chr2D 566754966 566755914 948 False 1334.0 1334 92.122 3055 4000 1 chr2D.!!$F2 945
5 TraesCS6D01G250600 chr2D 557684086 557684727 641 False 628.0 628 84.533 1143 1787 1 chr2D.!!$F1 644
6 TraesCS6D01G250600 chr3D 45022862 45023804 942 False 1214.0 1214 89.916 3054 4000 1 chr3D.!!$F1 946
7 TraesCS6D01G250600 chr3D 589772220 589773177 957 True 1192.0 1192 89.430 3057 4000 1 chr3D.!!$R1 943
8 TraesCS6D01G250600 chr4D 15324064 15325007 943 False 1184.0 1184 89.413 3055 3999 1 chr4D.!!$F1 944
9 TraesCS6D01G250600 chr4A 210938946 210939883 937 True 1171.0 1171 89.346 3064 4000 1 chr4A.!!$R1 936
10 TraesCS6D01G250600 chr1A 6929791 6930728 937 True 1171.0 1171 89.346 3064 4000 1 chr1A.!!$R1 936
11 TraesCS6D01G250600 chrUn 83555266 83556203 937 True 1166.0 1166 89.241 3064 4000 1 chrUn.!!$R1 936
12 TraesCS6D01G250600 chr5A 675470916 675471853 937 True 1166.0 1166 89.241 3064 4000 1 chr5A.!!$R1 936
13 TraesCS6D01G250600 chr2A 698092606 698093250 644 False 638.0 638 84.733 1143 1787 1 chr2A.!!$F1 644
14 TraesCS6D01G250600 chr2B 665858218 665858862 644 False 616.0 616 84.122 1143 1787 1 chr2B.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 3051 0.247736 CGGTTCTAGAGCTTGGCAGT 59.752 55.0 6.54 0.0 0.0 4.40 F
998 3061 0.671781 GCTTGGCAGTCTCACGATGT 60.672 55.0 0.00 0.0 0.0 3.06 F
1546 3624 0.676782 TGGACGAGACGCTGATCAGA 60.677 55.0 27.04 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 4041 0.579630 CGTCCTCTCTGATCTCGACG 59.420 60.000 0.00 0.00 37.39 5.12 R
2236 4332 1.230281 TGGAGGGCCTGGATCCTTT 60.230 57.895 12.95 0.00 34.04 3.11 R
3447 5584 0.324091 GTTCCTGTACGGGAGAGGGA 60.324 60.000 22.52 5.74 39.21 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.199852 CGCGCGCAAAAGAAACTTGT 61.200 50.000 32.61 0.00 0.00 3.16
28 29 5.448796 GCGCAAAAGAAACTTGTTTCATTTG 59.551 36.000 31.06 31.06 45.14 2.32
77 78 8.951243 TGAATTATTTGTCGTGGATTATGTTGA 58.049 29.630 0.00 0.00 0.00 3.18
98 99 8.441608 TGTTGACTTGTTTGAATTGTTGAATTG 58.558 29.630 0.00 0.00 31.58 2.32
116 117 9.801873 GTTGAATTGGTGTGTGCTATATTTATT 57.198 29.630 0.00 0.00 0.00 1.40
175 178 7.703058 TTCATGGAATTAGAAAGAGGGAAAC 57.297 36.000 0.00 0.00 0.00 2.78
196 199 1.294459 GGGACACCGTTGTAGGGAC 59.706 63.158 0.00 0.00 35.47 4.46
224 227 1.781786 TAAGCTCAGCCTCCTACTGG 58.218 55.000 0.00 0.00 35.78 4.00
225 228 0.980231 AAGCTCAGCCTCCTACTGGG 60.980 60.000 0.00 0.00 38.74 4.45
373 386 5.670792 ATACCACTCGTTCACTTTATCCA 57.329 39.130 0.00 0.00 0.00 3.41
404 418 6.428159 AGCTCATTTAACTACTGAAGTGGTTG 59.572 38.462 19.03 6.31 46.76 3.77
412 426 1.202651 ACTGAAGTGGTTGTTCCGGAG 60.203 52.381 3.34 0.00 39.52 4.63
473 2505 2.289010 CCAAACACCTCATTTCCCTTGC 60.289 50.000 0.00 0.00 0.00 4.01
648 2686 2.474735 CCCAAAAATTCGTTGCTTTCCG 59.525 45.455 0.00 0.00 0.00 4.30
773 2816 1.487976 TGGTGGAAGCATCTCATCTCC 59.512 52.381 0.00 0.00 40.88 3.71
774 2817 1.202746 GGTGGAAGCATCTCATCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
850 2902 1.608590 GTAAAGCAGCAGAGCACCAAA 59.391 47.619 0.00 0.00 36.85 3.28
899 2955 1.145819 GCCACTCATCTCCTGCCTC 59.854 63.158 0.00 0.00 0.00 4.70
910 2966 2.103934 CTGCCTCCGCTTCTCTCG 59.896 66.667 0.00 0.00 35.36 4.04
925 2988 3.057547 CTCGTCTCCCTCGCCACAG 62.058 68.421 0.00 0.00 0.00 3.66
957 3020 3.204526 CAGAAACTCATGCAGATCCTCC 58.795 50.000 0.00 0.00 0.00 4.30
959 3022 1.890552 AACTCATGCAGATCCTCCCT 58.109 50.000 0.00 0.00 0.00 4.20
988 3051 0.247736 CGGTTCTAGAGCTTGGCAGT 59.752 55.000 6.54 0.00 0.00 4.40
998 3061 0.671781 GCTTGGCAGTCTCACGATGT 60.672 55.000 0.00 0.00 0.00 3.06
1040 3103 3.812609 GCTCGTCTCATCTCATCTCTGTA 59.187 47.826 0.00 0.00 0.00 2.74
1043 3106 4.133820 CGTCTCATCTCATCTCTGTACCT 58.866 47.826 0.00 0.00 0.00 3.08
1068 3131 2.457366 TTCTTCTCCGTCTTCTTGGC 57.543 50.000 0.00 0.00 0.00 4.52
1082 3145 3.770040 TGGCCGTCCGGTCATCTG 61.770 66.667 9.28 0.00 46.04 2.90
1086 3149 2.887568 CGTCCGGTCATCTGCTGC 60.888 66.667 0.00 0.00 0.00 5.25
1134 3197 1.341156 AATCCTCCTCCGGCTCCAAG 61.341 60.000 0.00 0.00 0.00 3.61
1240 3303 2.027192 GTGGTGCTACTTCATCTTCCCA 60.027 50.000 0.00 0.00 0.00 4.37
1492 3570 3.154473 CGGGGCGATTCCAGGAGA 61.154 66.667 0.00 0.00 36.21 3.71
1546 3624 0.676782 TGGACGAGACGCTGATCAGA 60.677 55.000 27.04 0.00 0.00 3.27
1597 3678 2.126580 GGGTTCGTCGACTCCACG 60.127 66.667 14.70 0.00 38.67 4.94
1882 3963 2.507102 CGCGACGAGCCACAGATT 60.507 61.111 0.00 0.00 44.76 2.40
1982 4063 1.098129 CGAGATCAGAGAGGACGGCA 61.098 60.000 0.00 0.00 0.00 5.69
2303 4399 5.486526 TCTCAGGCATTCTTCTTCTTCTTC 58.513 41.667 0.00 0.00 0.00 2.87
2305 4401 5.243981 TCAGGCATTCTTCTTCTTCTTCTG 58.756 41.667 0.00 0.00 0.00 3.02
2312 4408 9.209175 GCATTCTTCTTCTTCTTCTGTTAACTA 57.791 33.333 7.22 0.00 0.00 2.24
2314 4410 9.713713 ATTCTTCTTCTTCTTCTGTTAACTACC 57.286 33.333 7.22 0.00 0.00 3.18
2315 4411 8.246430 TCTTCTTCTTCTTCTGTTAACTACCA 57.754 34.615 7.22 0.00 0.00 3.25
2316 4412 8.142551 TCTTCTTCTTCTTCTGTTAACTACCAC 58.857 37.037 7.22 0.00 0.00 4.16
2317 4413 7.598759 TCTTCTTCTTCTGTTAACTACCACT 57.401 36.000 7.22 0.00 0.00 4.00
2350 4446 5.408604 ACACTTGACCGTGATGATACTTTTC 59.591 40.000 0.00 0.00 38.27 2.29
2396 4492 2.496341 TCGCCAGCCGAATCAGAG 59.504 61.111 0.00 0.00 44.21 3.35
2420 4516 4.698780 TCTGGAGATTTCTTCTTCGTCGTA 59.301 41.667 0.00 0.00 31.82 3.43
2452 4548 2.898840 CGAATCGCCAGCATGCCT 60.899 61.111 15.66 0.00 31.97 4.75
2453 4549 2.719979 GAATCGCCAGCATGCCTG 59.280 61.111 15.66 11.86 41.41 4.85
2466 4562 3.368822 GCCTGCTGCACAAATCCA 58.631 55.556 0.00 0.00 40.77 3.41
2467 4563 1.667151 GCCTGCTGCACAAATCCAA 59.333 52.632 0.00 0.00 40.77 3.53
2499 4595 1.228644 AATGGCTGCACCTGCTGAA 60.229 52.632 8.24 0.00 41.71 3.02
2560 4683 9.230122 AGGAAATGATTTCTCTTCTTCTTCTTC 57.770 33.333 16.58 0.00 39.59 2.87
2561 4684 9.230122 GGAAATGATTTCTCTTCTTCTTCTTCT 57.770 33.333 16.58 0.00 39.59 2.85
2602 4725 3.323403 CCTCTCCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
2603 4726 4.222336 CTCTCCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2604 4727 4.219115 TCTCCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
2605 4728 4.078922 TCTCCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
2606 4729 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
2607 4730 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
2608 4731 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2609 4732 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2610 4733 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2746 4869 3.015293 GCATCCTCACGTGTGTGCG 62.015 63.158 16.51 4.14 46.01 5.34
2751 4874 1.651132 CTCACGTGTGTGCGTTTGC 60.651 57.895 16.51 0.00 46.01 3.68
2809 4935 0.679640 GGGGATGTGCGTGGAAATGA 60.680 55.000 0.00 0.00 0.00 2.57
2999 5136 3.242413 GCGAATAACATGTGCGTCTCATT 60.242 43.478 0.00 0.00 0.00 2.57
3032 5169 2.125793 GGGTGTTAGGTCGACGGC 60.126 66.667 9.92 0.00 0.00 5.68
3253 5390 0.179092 AACGCGTTATACCCTCCAGC 60.179 55.000 25.38 0.00 0.00 4.85
3379 5516 2.166459 ACATGGTGATGACGAAGACGAT 59.834 45.455 0.00 0.00 36.68 3.73
3447 5584 1.544246 GCTGCCCAAAAACCTATTCGT 59.456 47.619 0.00 0.00 0.00 3.85
3568 5706 1.070105 CAAAGGAACGACGGTGGGA 59.930 57.895 0.00 0.00 0.00 4.37
3896 6051 6.828785 TGAAAGAACATCCCTTATAAAGAGGC 59.171 38.462 0.00 0.00 32.74 4.70
3939 6094 2.558066 TGGGGCTAAACTTCCCACA 58.442 52.632 0.00 0.00 45.04 4.17
3941 6096 1.431243 TGGGGCTAAACTTCCCACATT 59.569 47.619 0.00 0.00 45.04 2.71
3970 6126 1.864669 CCAATAAACCCACATGGCCT 58.135 50.000 3.32 0.00 37.83 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.292916 AAGTTTCTTTTGCGCGCGC 61.293 52.632 45.02 45.02 42.35 6.86
77 78 6.878389 ACACCAATTCAACAATTCAAACAAGT 59.122 30.769 0.00 0.00 28.97 3.16
175 178 1.295423 CCTACAACGGTGTCCCCTG 59.705 63.158 10.72 0.00 39.30 4.45
196 199 5.059833 AGGAGGCTGAGCTTAATTTATTCG 58.940 41.667 3.72 0.00 0.00 3.34
224 227 1.299468 CTCTCCGTATGTCTGCGCC 60.299 63.158 4.18 0.00 0.00 6.53
225 228 0.592754 GACTCTCCGTATGTCTGCGC 60.593 60.000 0.00 0.00 0.00 6.09
354 359 4.935205 TGAATGGATAAAGTGAACGAGTGG 59.065 41.667 0.00 0.00 0.00 4.00
373 386 7.880195 ACTTCAGTAGTTAAATGAGCTGTGAAT 59.120 33.333 0.00 0.00 31.29 2.57
428 442 6.931840 GGGTCATCAGATGATAAAGTAGGAAC 59.068 42.308 16.37 0.00 42.04 3.62
473 2505 4.829064 TCGTTTTGTCTCCTTTGGAATG 57.171 40.909 0.00 0.00 0.00 2.67
531 2563 9.524106 TCTTATTTCGTTTTCCTTTTTCCTTTC 57.476 29.630 0.00 0.00 0.00 2.62
648 2686 2.591715 ACCTGTGCGTGCTTGTCC 60.592 61.111 0.00 0.00 0.00 4.02
773 2816 2.977580 TGGAGAAGGGATCATGAGATGG 59.022 50.000 0.09 0.00 33.72 3.51
774 2817 3.244491 GGTGGAGAAGGGATCATGAGATG 60.244 52.174 0.09 0.00 33.72 2.90
850 2902 0.755079 TGACAGTCTCTGCTTGCAGT 59.245 50.000 20.20 2.84 34.37 4.40
899 2955 1.720694 GAGGGAGACGAGAGAAGCGG 61.721 65.000 0.00 0.00 0.00 5.52
910 2966 1.079750 GAACTGTGGCGAGGGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
925 2988 1.269413 TGAGTTTCTGGTCCGACGAAC 60.269 52.381 0.00 0.00 0.00 3.95
957 3020 1.323271 TAGAACCGGCAGAGCAGAGG 61.323 60.000 0.00 0.00 0.00 3.69
959 3022 0.323451 TCTAGAACCGGCAGAGCAGA 60.323 55.000 0.00 0.00 0.00 4.26
988 3051 1.313091 CCCGTCAGGACATCGTGAGA 61.313 60.000 4.57 0.00 40.82 3.27
998 3061 0.909610 AAATCTCTGCCCCGTCAGGA 60.910 55.000 0.00 0.00 41.02 3.86
1040 3103 2.900546 AGACGGAGAAGAATCACAAGGT 59.099 45.455 0.00 0.00 0.00 3.50
1043 3106 4.873746 AGAAGACGGAGAAGAATCACAA 57.126 40.909 0.00 0.00 0.00 3.33
1068 3131 2.202797 CAGCAGATGACCGGACGG 60.203 66.667 9.46 9.56 42.03 4.79
1086 3149 1.372087 GGCCATGGAAGACAGAAGCG 61.372 60.000 18.40 0.00 0.00 4.68
1492 3570 1.079438 GACCTCCCACTCCTCCTGT 59.921 63.158 0.00 0.00 0.00 4.00
1546 3624 1.967319 ACTTGCACACGGTGATCTTT 58.033 45.000 16.29 0.00 35.23 2.52
1597 3678 3.386237 AGGCAGACGGAGCAGTCC 61.386 66.667 3.83 0.00 41.83 3.85
1881 3962 2.515757 TGTTGCTGCTCGCCACAA 60.516 55.556 0.00 0.00 40.85 3.33
1882 3963 2.974148 CTGTTGCTGCTCGCCACA 60.974 61.111 0.00 5.61 41.45 4.17
1898 3979 4.845580 CTCCTGATTGCCGCCGCT 62.846 66.667 0.00 0.00 35.36 5.52
1960 4041 0.579630 CGTCCTCTCTGATCTCGACG 59.420 60.000 0.00 0.00 37.39 5.12
2236 4332 1.230281 TGGAGGGCCTGGATCCTTT 60.230 57.895 12.95 0.00 34.04 3.11
2303 4399 6.015688 TGTTCTACTGGAGTGGTAGTTAACAG 60.016 42.308 8.61 0.00 38.16 3.16
2305 4401 6.015603 AGTGTTCTACTGGAGTGGTAGTTAAC 60.016 42.308 0.00 0.00 38.49 2.01
2312 4408 3.069729 GTCAAGTGTTCTACTGGAGTGGT 59.930 47.826 0.00 0.00 40.05 4.16
2313 4409 3.555168 GGTCAAGTGTTCTACTGGAGTGG 60.555 52.174 0.00 0.00 40.05 4.00
2314 4410 3.654414 GGTCAAGTGTTCTACTGGAGTG 58.346 50.000 0.00 0.00 40.05 3.51
2315 4411 2.296471 CGGTCAAGTGTTCTACTGGAGT 59.704 50.000 0.00 0.00 40.05 3.85
2316 4412 2.296471 ACGGTCAAGTGTTCTACTGGAG 59.704 50.000 0.00 0.00 40.05 3.86
2317 4413 2.035449 CACGGTCAAGTGTTCTACTGGA 59.965 50.000 0.00 0.00 40.26 3.86
2392 4488 5.101628 CGAAGAAGAAATCTCCAGACTCTG 58.898 45.833 0.00 0.00 37.42 3.35
2394 4490 5.066968 ACGAAGAAGAAATCTCCAGACTC 57.933 43.478 0.00 0.00 37.42 3.36
2396 4492 3.854809 CGACGAAGAAGAAATCTCCAGAC 59.145 47.826 0.00 0.00 37.42 3.51
2451 4547 2.230508 ACAGATTGGATTTGTGCAGCAG 59.769 45.455 0.00 0.00 0.00 4.24
2452 4548 2.029739 CACAGATTGGATTTGTGCAGCA 60.030 45.455 0.00 0.00 36.20 4.41
2453 4549 2.602878 CACAGATTGGATTTGTGCAGC 58.397 47.619 0.00 0.00 36.20 5.25
2547 4670 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
2548 4671 7.930865 TGGAAGAAGAAGAAGAAGAAGAAGAAG 59.069 37.037 0.00 0.00 0.00 2.85
2549 4672 7.796054 TGGAAGAAGAAGAAGAAGAAGAAGAA 58.204 34.615 0.00 0.00 0.00 2.52
2550 4673 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
2551 4674 7.661027 ACATGGAAGAAGAAGAAGAAGAAGAAG 59.339 37.037 0.00 0.00 0.00 2.85
2552 4675 7.512992 ACATGGAAGAAGAAGAAGAAGAAGAA 58.487 34.615 0.00 0.00 0.00 2.52
2553 4676 7.072263 ACATGGAAGAAGAAGAAGAAGAAGA 57.928 36.000 0.00 0.00 0.00 2.87
2554 4677 7.583230 CAACATGGAAGAAGAAGAAGAAGAAG 58.417 38.462 0.00 0.00 0.00 2.85
2555 4678 6.016777 GCAACATGGAAGAAGAAGAAGAAGAA 60.017 38.462 0.00 0.00 0.00 2.52
2556 4679 5.471456 GCAACATGGAAGAAGAAGAAGAAGA 59.529 40.000 0.00 0.00 0.00 2.87
2557 4680 5.335504 GGCAACATGGAAGAAGAAGAAGAAG 60.336 44.000 0.00 0.00 0.00 2.85
2558 4681 4.520492 GGCAACATGGAAGAAGAAGAAGAA 59.480 41.667 0.00 0.00 0.00 2.52
2559 4682 4.074970 GGCAACATGGAAGAAGAAGAAGA 58.925 43.478 0.00 0.00 0.00 2.87
2560 4683 4.077822 AGGCAACATGGAAGAAGAAGAAG 58.922 43.478 0.00 0.00 41.41 2.85
2561 4684 4.074970 GAGGCAACATGGAAGAAGAAGAA 58.925 43.478 0.00 0.00 41.41 2.52
2602 4725 4.511454 CCAATCGTGTAGAGAGAGAGAGAG 59.489 50.000 0.00 0.00 0.00 3.20
2603 4726 4.162509 TCCAATCGTGTAGAGAGAGAGAGA 59.837 45.833 0.00 0.00 0.00 3.10
2604 4727 4.447290 TCCAATCGTGTAGAGAGAGAGAG 58.553 47.826 0.00 0.00 0.00 3.20
2605 4728 4.489306 TCCAATCGTGTAGAGAGAGAGA 57.511 45.455 0.00 0.00 0.00 3.10
2606 4729 5.530915 AGAATCCAATCGTGTAGAGAGAGAG 59.469 44.000 0.00 0.00 0.00 3.20
2607 4730 5.298026 CAGAATCCAATCGTGTAGAGAGAGA 59.702 44.000 0.00 0.00 0.00 3.10
2608 4731 5.518812 CAGAATCCAATCGTGTAGAGAGAG 58.481 45.833 0.00 0.00 0.00 3.20
2609 4732 4.202060 GCAGAATCCAATCGTGTAGAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
2610 4733 4.047822 GCAGAATCCAATCGTGTAGAGAG 58.952 47.826 0.00 0.00 0.00 3.20
2751 4874 5.235616 ACTTTGACAGCTTGAAATGCAATTG 59.764 36.000 0.00 0.00 39.85 2.32
2756 4879 5.362556 TCTACTTTGACAGCTTGAAATGC 57.637 39.130 0.00 0.00 37.24 3.56
2809 4935 4.676196 GCTTGATTGGCGATGATCAGTTTT 60.676 41.667 0.09 0.00 34.10 2.43
2999 5136 2.499289 ACACCCAACTGCAATTTGACAA 59.501 40.909 8.91 0.00 0.00 3.18
3143 5280 5.513849 CGTAGTACGTGCATGTCTAAATCAA 59.486 40.000 16.44 0.00 36.74 2.57
3148 5285 2.421073 AGCGTAGTACGTGCATGTCTAA 59.579 45.455 22.81 0.00 44.73 2.10
3301 5438 2.429930 CCGACAAGAAGGCCACCA 59.570 61.111 5.01 0.00 0.00 4.17
3379 5516 1.743958 GCTACTTCCTCTACGTCTGCA 59.256 52.381 0.00 0.00 0.00 4.41
3447 5584 0.324091 GTTCCTGTACGGGAGAGGGA 60.324 60.000 22.52 5.74 39.21 4.20
3474 5612 2.118951 AGGTCTCCGAAACCCCGA 59.881 61.111 0.00 0.00 37.52 5.14
3585 5724 2.444624 CCGCCACGAACAGATCACG 61.445 63.158 0.00 0.00 0.00 4.35
3649 5788 2.637383 GGTCGAGCCCACGTCTCTT 61.637 63.158 2.39 0.00 34.70 2.85
3694 5833 1.260206 CACGATTTGAGACGTCGGAG 58.740 55.000 10.46 1.59 40.76 4.63
3896 6051 2.784347 GAAAGTGGAAGAGGAGTTGGG 58.216 52.381 0.00 0.00 0.00 4.12
3925 6080 3.421844 AGGTGAATGTGGGAAGTTTAGC 58.578 45.455 0.00 0.00 0.00 3.09
3939 6094 4.264172 TGGGTTTATTGGCACTAGGTGAAT 60.264 41.667 1.57 0.00 35.23 2.57
3941 6096 2.645297 TGGGTTTATTGGCACTAGGTGA 59.355 45.455 1.57 0.00 35.23 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.