Multiple sequence alignment - TraesCS6D01G250300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G250300 | chr6D | 100.000 | 3420 | 0 | 0 | 1557 | 4976 | 353637504 | 353640923 | 0.000000e+00 | 6316.0 |
1 | TraesCS6D01G250300 | chr6D | 100.000 | 1205 | 0 | 0 | 1 | 1205 | 353635948 | 353637152 | 0.000000e+00 | 2226.0 |
2 | TraesCS6D01G250300 | chr6D | 80.892 | 314 | 43 | 5 | 2554 | 2867 | 353637525 | 353637821 | 1.080000e-56 | 231.0 |
3 | TraesCS6D01G250300 | chr6D | 80.952 | 315 | 41 | 7 | 1578 | 1874 | 353638501 | 353638814 | 1.080000e-56 | 231.0 |
4 | TraesCS6D01G250300 | chr6D | 89.216 | 102 | 8 | 3 | 1880 | 1981 | 289507427 | 289507525 | 1.880000e-24 | 124.0 |
5 | TraesCS6D01G250300 | chr6D | 92.405 | 79 | 5 | 1 | 1880 | 1958 | 9177364 | 9177287 | 1.460000e-20 | 111.0 |
6 | TraesCS6D01G250300 | chr6D | 86.408 | 103 | 8 | 6 | 1880 | 1981 | 198827105 | 198827008 | 1.890000e-19 | 108.0 |
7 | TraesCS6D01G250300 | chr6D | 94.340 | 53 | 3 | 0 | 4631 | 4683 | 9877196 | 9877144 | 1.150000e-11 | 82.4 |
8 | TraesCS6D01G250300 | chr6D | 89.831 | 59 | 5 | 1 | 4620 | 4678 | 61766526 | 61766583 | 1.920000e-09 | 75.0 |
9 | TraesCS6D01G250300 | chr6D | 92.157 | 51 | 4 | 0 | 4628 | 4678 | 7748166 | 7748216 | 6.910000e-09 | 73.1 |
10 | TraesCS6D01G250300 | chr6D | 93.478 | 46 | 3 | 0 | 4628 | 4673 | 4798050 | 4798005 | 8.940000e-08 | 69.4 |
11 | TraesCS6D01G250300 | chr6D | 89.583 | 48 | 5 | 0 | 2970 | 3017 | 33963634 | 33963681 | 1.500000e-05 | 62.1 |
12 | TraesCS6D01G250300 | chr6D | 100.000 | 30 | 0 | 0 | 4641 | 4670 | 110724924 | 110724953 | 6.960000e-04 | 56.5 |
13 | TraesCS6D01G250300 | chr6D | 94.444 | 36 | 1 | 1 | 799 | 833 | 201381973 | 201382008 | 3.000000e-03 | 54.7 |
14 | TraesCS6D01G250300 | chr6D | 96.875 | 32 | 0 | 1 | 4646 | 4677 | 269116995 | 269117025 | 9.000000e-03 | 52.8 |
15 | TraesCS6D01G250300 | chr6B | 96.542 | 2111 | 61 | 7 | 2475 | 4582 | 524968208 | 524966107 | 0.000000e+00 | 3483.0 |
16 | TraesCS6D01G250300 | chr6B | 88.806 | 670 | 30 | 18 | 445 | 1099 | 524969290 | 524968651 | 0.000000e+00 | 780.0 |
17 | TraesCS6D01G250300 | chr6B | 91.038 | 424 | 22 | 9 | 1 | 413 | 524970044 | 524969626 | 4.350000e-155 | 558.0 |
18 | TraesCS6D01G250300 | chr6B | 87.302 | 315 | 28 | 2 | 1569 | 1880 | 524968514 | 524968209 | 2.850000e-92 | 350.0 |
19 | TraesCS6D01G250300 | chr6B | 92.377 | 223 | 11 | 1 | 2258 | 2474 | 560196893 | 560197115 | 3.740000e-81 | 313.0 |
20 | TraesCS6D01G250300 | chr6B | 91.623 | 191 | 10 | 2 | 4625 | 4814 | 574471713 | 574471898 | 4.940000e-65 | 259.0 |
21 | TraesCS6D01G250300 | chr6B | 80.982 | 326 | 43 | 7 | 1573 | 1880 | 524968136 | 524967812 | 1.790000e-59 | 241.0 |
22 | TraesCS6D01G250300 | chr6B | 93.421 | 152 | 6 | 2 | 4805 | 4952 | 574471915 | 574472066 | 6.480000e-54 | 222.0 |
23 | TraesCS6D01G250300 | chr6B | 89.677 | 155 | 9 | 4 | 2337 | 2489 | 429984566 | 429984715 | 1.830000e-44 | 191.0 |
24 | TraesCS6D01G250300 | chr6B | 91.045 | 67 | 6 | 0 | 4633 | 4699 | 644836002 | 644835936 | 1.910000e-14 | 91.6 |
25 | TraesCS6D01G250300 | chr6B | 91.667 | 48 | 4 | 0 | 2969 | 3016 | 213399677 | 213399630 | 3.210000e-07 | 67.6 |
26 | TraesCS6D01G250300 | chr6A | 96.118 | 1520 | 46 | 7 | 3026 | 4541 | 488609778 | 488608268 | 0.000000e+00 | 2468.0 |
27 | TraesCS6D01G250300 | chr6A | 87.316 | 1222 | 66 | 52 | 1 | 1205 | 488611775 | 488610626 | 0.000000e+00 | 1315.0 |
28 | TraesCS6D01G250300 | chr6A | 90.693 | 505 | 46 | 1 | 2475 | 2978 | 488610280 | 488609776 | 0.000000e+00 | 671.0 |
29 | TraesCS6D01G250300 | chr6A | 85.758 | 330 | 32 | 5 | 1557 | 1880 | 488610601 | 488610281 | 7.980000e-88 | 335.0 |
30 | TraesCS6D01G250300 | chr6A | 78.589 | 397 | 53 | 10 | 2554 | 2944 | 488610580 | 488610210 | 3.000000e-57 | 233.0 |
31 | TraesCS6D01G250300 | chr6A | 86.301 | 73 | 8 | 2 | 4620 | 4692 | 50360159 | 50360229 | 1.490000e-10 | 78.7 |
32 | TraesCS6D01G250300 | chr2A | 91.791 | 402 | 26 | 6 | 1937 | 2334 | 591276045 | 591275647 | 2.020000e-153 | 553.0 |
33 | TraesCS6D01G250300 | chr2A | 90.196 | 102 | 7 | 3 | 1880 | 1981 | 594585299 | 594585201 | 4.040000e-26 | 130.0 |
34 | TraesCS6D01G250300 | chr5A | 97.806 | 319 | 4 | 3 | 1950 | 2267 | 151067241 | 151066925 | 9.420000e-152 | 547.0 |
35 | TraesCS6D01G250300 | chr5A | 98.693 | 306 | 3 | 1 | 1953 | 2257 | 611029591 | 611029896 | 4.380000e-150 | 542.0 |
36 | TraesCS6D01G250300 | chr5A | 97.476 | 317 | 7 | 1 | 1946 | 2261 | 630123773 | 630124089 | 1.580000e-149 | 540.0 |
37 | TraesCS6D01G250300 | chr5A | 96.865 | 319 | 7 | 3 | 1941 | 2257 | 366030816 | 366030499 | 9.480000e-147 | 531.0 |
38 | TraesCS6D01G250300 | chr5A | 97.428 | 311 | 7 | 1 | 1952 | 2261 | 79287467 | 79287157 | 3.410000e-146 | 529.0 |
39 | TraesCS6D01G250300 | chr5A | 95.652 | 46 | 2 | 0 | 2971 | 3016 | 367595305 | 367595260 | 1.920000e-09 | 75.0 |
40 | TraesCS6D01G250300 | chr5A | 95.455 | 44 | 2 | 0 | 2968 | 3011 | 687347491 | 687347448 | 2.490000e-08 | 71.3 |
41 | TraesCS6D01G250300 | chr3A | 98.046 | 307 | 5 | 1 | 1952 | 2257 | 291788337 | 291788643 | 2.640000e-147 | 532.0 |
42 | TraesCS6D01G250300 | chr3A | 97.735 | 309 | 6 | 1 | 1950 | 2257 | 140004279 | 140004587 | 9.480000e-147 | 531.0 |
43 | TraesCS6D01G250300 | chr3A | 96.296 | 324 | 8 | 4 | 1939 | 2261 | 363315967 | 363316287 | 3.410000e-146 | 529.0 |
44 | TraesCS6D01G250300 | chr3A | 92.308 | 221 | 11 | 2 | 2260 | 2474 | 137605291 | 137605071 | 4.840000e-80 | 309.0 |
45 | TraesCS6D01G250300 | chr3A | 95.455 | 44 | 2 | 0 | 2968 | 3011 | 587599543 | 587599500 | 2.490000e-08 | 71.3 |
46 | TraesCS6D01G250300 | chr7B | 91.875 | 320 | 15 | 5 | 4663 | 4976 | 710156718 | 710157032 | 2.130000e-118 | 436.0 |
47 | TraesCS6D01G250300 | chr7B | 88.462 | 104 | 9 | 3 | 1878 | 1981 | 337593704 | 337593604 | 6.760000e-24 | 122.0 |
48 | TraesCS6D01G250300 | chr7B | 90.909 | 66 | 5 | 1 | 4618 | 4683 | 746618664 | 746618728 | 2.470000e-13 | 87.9 |
49 | TraesCS6D01G250300 | chr7B | 94.118 | 51 | 2 | 1 | 2964 | 3013 | 748341811 | 748341861 | 5.340000e-10 | 76.8 |
50 | TraesCS6D01G250300 | chr3B | 87.179 | 351 | 21 | 13 | 4628 | 4975 | 129248527 | 129248856 | 1.310000e-100 | 377.0 |
51 | TraesCS6D01G250300 | chr3B | 92.391 | 92 | 3 | 4 | 1881 | 1972 | 70982217 | 70982304 | 1.450000e-25 | 128.0 |
52 | TraesCS6D01G250300 | chr5B | 91.255 | 263 | 14 | 3 | 4717 | 4976 | 648730130 | 648730386 | 2.850000e-92 | 350.0 |
53 | TraesCS6D01G250300 | chr5B | 89.103 | 156 | 8 | 6 | 2337 | 2489 | 223014173 | 223014024 | 8.510000e-43 | 185.0 |
54 | TraesCS6D01G250300 | chr5B | 88.387 | 155 | 11 | 4 | 2337 | 2489 | 463376911 | 463377060 | 3.960000e-41 | 180.0 |
55 | TraesCS6D01G250300 | chr5B | 93.976 | 83 | 3 | 2 | 1880 | 1962 | 28494903 | 28494983 | 1.880000e-24 | 124.0 |
56 | TraesCS6D01G250300 | chr5B | 91.954 | 87 | 4 | 3 | 1880 | 1966 | 339296360 | 339296277 | 8.750000e-23 | 119.0 |
57 | TraesCS6D01G250300 | chr5B | 88.235 | 102 | 9 | 3 | 1880 | 1981 | 375130549 | 375130647 | 8.750000e-23 | 119.0 |
58 | TraesCS6D01G250300 | chr5B | 98.276 | 58 | 0 | 1 | 4624 | 4681 | 648730064 | 648730120 | 3.170000e-17 | 100.0 |
59 | TraesCS6D01G250300 | chr5B | 86.667 | 75 | 10 | 0 | 4628 | 4702 | 540353851 | 540353777 | 3.190000e-12 | 84.2 |
60 | TraesCS6D01G250300 | chr5B | 92.857 | 56 | 4 | 0 | 4628 | 4683 | 82138251 | 82138306 | 1.150000e-11 | 82.4 |
61 | TraesCS6D01G250300 | chr5B | 93.333 | 45 | 1 | 2 | 2966 | 3010 | 217907776 | 217907734 | 1.160000e-06 | 65.8 |
62 | TraesCS6D01G250300 | chr3D | 93.722 | 223 | 8 | 2 | 2258 | 2474 | 469481454 | 469481232 | 3.710000e-86 | 329.0 |
63 | TraesCS6D01G250300 | chr3D | 92.760 | 221 | 10 | 1 | 2260 | 2474 | 386614228 | 386614008 | 1.040000e-81 | 315.0 |
64 | TraesCS6D01G250300 | chr3D | 90.196 | 102 | 7 | 3 | 1880 | 1981 | 469481525 | 469481427 | 4.040000e-26 | 130.0 |
65 | TraesCS6D01G250300 | chr3D | 97.333 | 75 | 2 | 0 | 1880 | 1954 | 454899761 | 454899687 | 1.450000e-25 | 128.0 |
66 | TraesCS6D01G250300 | chr1D | 93.274 | 223 | 7 | 4 | 2258 | 2474 | 397212936 | 397213156 | 6.210000e-84 | 322.0 |
67 | TraesCS6D01G250300 | chr1D | 90.196 | 102 | 7 | 3 | 1880 | 1981 | 397212865 | 397212963 | 4.040000e-26 | 130.0 |
68 | TraesCS6D01G250300 | chr1D | 92.857 | 56 | 4 | 0 | 4628 | 4683 | 437689155 | 437689100 | 1.150000e-11 | 82.4 |
69 | TraesCS6D01G250300 | chr1D | 90.164 | 61 | 4 | 2 | 4624 | 4683 | 466009135 | 466009076 | 1.490000e-10 | 78.7 |
70 | TraesCS6D01G250300 | chr1D | 85.333 | 75 | 10 | 1 | 4624 | 4698 | 143363350 | 143363423 | 5.340000e-10 | 76.8 |
71 | TraesCS6D01G250300 | chr1D | 90.000 | 60 | 3 | 3 | 1908 | 1967 | 609359 | 609303 | 1.920000e-09 | 75.0 |
72 | TraesCS6D01G250300 | chr1D | 97.674 | 43 | 1 | 0 | 2971 | 3013 | 337065184 | 337065226 | 1.920000e-09 | 75.0 |
73 | TraesCS6D01G250300 | chr1D | 87.931 | 58 | 6 | 1 | 4621 | 4678 | 452649804 | 452649748 | 3.210000e-07 | 67.6 |
74 | TraesCS6D01G250300 | chr1D | 100.000 | 31 | 0 | 0 | 1871 | 1901 | 397213168 | 397213138 | 1.930000e-04 | 58.4 |
75 | TraesCS6D01G250300 | chr2D | 92.825 | 223 | 9 | 2 | 2258 | 2474 | 577323516 | 577323737 | 2.890000e-82 | 316.0 |
76 | TraesCS6D01G250300 | chr2D | 82.178 | 101 | 15 | 3 | 4632 | 4731 | 646136682 | 646136584 | 3.190000e-12 | 84.2 |
77 | TraesCS6D01G250300 | chr2D | 95.349 | 43 | 2 | 0 | 2971 | 3013 | 555111977 | 555111935 | 8.940000e-08 | 69.4 |
78 | TraesCS6D01G250300 | chr7A | 92.793 | 222 | 9 | 3 | 2260 | 2474 | 503448998 | 503448777 | 1.040000e-81 | 315.0 |
79 | TraesCS6D01G250300 | chr7A | 91.928 | 223 | 12 | 2 | 2258 | 2474 | 175240603 | 175240825 | 1.740000e-79 | 307.0 |
80 | TraesCS6D01G250300 | chr7A | 91.928 | 223 | 12 | 2 | 2258 | 2474 | 732467214 | 732466992 | 1.740000e-79 | 307.0 |
81 | TraesCS6D01G250300 | chr7A | 92.473 | 93 | 4 | 3 | 1880 | 1972 | 675242146 | 675242235 | 4.040000e-26 | 130.0 |
82 | TraesCS6D01G250300 | chr7D | 92.614 | 176 | 7 | 3 | 4807 | 4976 | 105262652 | 105262827 | 1.070000e-61 | 248.0 |
83 | TraesCS6D01G250300 | chr7D | 92.617 | 149 | 8 | 2 | 4628 | 4774 | 105262506 | 105262653 | 1.400000e-50 | 211.0 |
84 | TraesCS6D01G250300 | chr7D | 84.112 | 107 | 13 | 3 | 4628 | 4732 | 74059430 | 74059534 | 3.170000e-17 | 100.0 |
85 | TraesCS6D01G250300 | chr1B | 81.006 | 358 | 23 | 13 | 4622 | 4976 | 443273 | 443588 | 4.980000e-60 | 243.0 |
86 | TraesCS6D01G250300 | chr1B | 88.387 | 155 | 10 | 5 | 2337 | 2489 | 282743735 | 282743883 | 3.960000e-41 | 180.0 |
87 | TraesCS6D01G250300 | chr1B | 89.623 | 106 | 8 | 3 | 1876 | 1981 | 418414781 | 418414679 | 1.120000e-26 | 132.0 |
88 | TraesCS6D01G250300 | chr1B | 89.216 | 102 | 8 | 3 | 1880 | 1981 | 50558325 | 50558423 | 1.880000e-24 | 124.0 |
89 | TraesCS6D01G250300 | chr2B | 92.262 | 168 | 6 | 4 | 4811 | 4976 | 649943392 | 649943230 | 1.080000e-56 | 231.0 |
90 | TraesCS6D01G250300 | chr2B | 92.405 | 158 | 11 | 1 | 4628 | 4784 | 649946124 | 649945967 | 1.800000e-54 | 224.0 |
91 | TraesCS6D01G250300 | chr2B | 91.176 | 102 | 6 | 3 | 1880 | 1981 | 404411944 | 404412042 | 8.690000e-28 | 135.0 |
92 | TraesCS6D01G250300 | chr2B | 88.785 | 107 | 9 | 3 | 1875 | 1981 | 784782439 | 784782336 | 1.450000e-25 | 128.0 |
93 | TraesCS6D01G250300 | chr4B | 89.032 | 155 | 10 | 4 | 2337 | 2489 | 379880119 | 379879970 | 8.510000e-43 | 185.0 |
94 | TraesCS6D01G250300 | chr4B | 86.275 | 102 | 11 | 3 | 1880 | 1981 | 613373662 | 613373760 | 1.890000e-19 | 108.0 |
95 | TraesCS6D01G250300 | chr4B | 87.324 | 71 | 9 | 0 | 4628 | 4698 | 605929113 | 605929043 | 1.150000e-11 | 82.4 |
96 | TraesCS6D01G250300 | chr4B | 91.489 | 47 | 2 | 2 | 2968 | 3013 | 453246240 | 453246285 | 4.160000e-06 | 63.9 |
97 | TraesCS6D01G250300 | chr4B | 93.182 | 44 | 1 | 2 | 2971 | 3013 | 461693455 | 461693497 | 4.160000e-06 | 63.9 |
98 | TraesCS6D01G250300 | chr4D | 90.099 | 101 | 7 | 3 | 1880 | 1980 | 461108884 | 461108787 | 1.450000e-25 | 128.0 |
99 | TraesCS6D01G250300 | chr4D | 87.255 | 102 | 10 | 3 | 1880 | 1981 | 380804144 | 380804046 | 4.070000e-21 | 113.0 |
100 | TraesCS6D01G250300 | chr4D | 97.872 | 47 | 1 | 0 | 4628 | 4674 | 139631008 | 139631054 | 1.150000e-11 | 82.4 |
101 | TraesCS6D01G250300 | chr4D | 97.778 | 45 | 1 | 0 | 2969 | 3013 | 434161705 | 434161661 | 1.490000e-10 | 78.7 |
102 | TraesCS6D01G250300 | chr4D | 91.304 | 46 | 4 | 0 | 2968 | 3013 | 79147180 | 79147225 | 4.160000e-06 | 63.9 |
103 | TraesCS6D01G250300 | chr1A | 96.000 | 75 | 3 | 0 | 1880 | 1954 | 568537779 | 568537705 | 6.760000e-24 | 122.0 |
104 | TraesCS6D01G250300 | chr1A | 86.239 | 109 | 11 | 4 | 1873 | 1981 | 543067235 | 543067131 | 1.130000e-21 | 115.0 |
105 | TraesCS6D01G250300 | chr1A | 86.869 | 99 | 10 | 3 | 1883 | 1981 | 324524047 | 324523952 | 1.890000e-19 | 108.0 |
106 | TraesCS6D01G250300 | chr1A | 89.394 | 66 | 5 | 2 | 4620 | 4685 | 488608429 | 488608492 | 1.150000e-11 | 82.4 |
107 | TraesCS6D01G250300 | chr1A | 95.349 | 43 | 2 | 0 | 2966 | 3008 | 208265949 | 208265907 | 8.940000e-08 | 69.4 |
108 | TraesCS6D01G250300 | chrUn | 92.857 | 56 | 4 | 0 | 4628 | 4683 | 348377808 | 348377863 | 1.150000e-11 | 82.4 |
109 | TraesCS6D01G250300 | chrUn | 90.164 | 61 | 5 | 1 | 4628 | 4687 | 310738424 | 310738484 | 1.490000e-10 | 78.7 |
110 | TraesCS6D01G250300 | chr5D | 91.667 | 60 | 4 | 1 | 4624 | 4683 | 545803785 | 545803727 | 1.150000e-11 | 82.4 |
111 | TraesCS6D01G250300 | chr5D | 100.000 | 38 | 0 | 0 | 2976 | 3013 | 442370704 | 442370741 | 2.490000e-08 | 71.3 |
112 | TraesCS6D01G250300 | chr5D | 91.667 | 48 | 4 | 0 | 2969 | 3016 | 144355881 | 144355834 | 3.210000e-07 | 67.6 |
113 | TraesCS6D01G250300 | chr5D | 91.667 | 48 | 3 | 1 | 2970 | 3016 | 142540874 | 142540921 | 1.160000e-06 | 65.8 |
114 | TraesCS6D01G250300 | chr4A | 97.778 | 45 | 1 | 0 | 2969 | 3013 | 714590089 | 714590045 | 1.490000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G250300 | chr6D | 353635948 | 353640923 | 4975 | False | 2251.0 | 6316 | 90.4610 | 1 | 4976 | 4 | chr6D.!!$F8 | 4975 |
1 | TraesCS6D01G250300 | chr6B | 524966107 | 524970044 | 3937 | True | 1082.4 | 3483 | 88.9340 | 1 | 4582 | 5 | chr6B.!!$R3 | 4581 |
2 | TraesCS6D01G250300 | chr6A | 488608268 | 488611775 | 3507 | True | 1004.4 | 2468 | 87.6948 | 1 | 4541 | 5 | chr6A.!!$R1 | 4540 |
3 | TraesCS6D01G250300 | chr2B | 649943230 | 649946124 | 2894 | True | 227.5 | 231 | 92.3335 | 4628 | 4976 | 2 | chr2B.!!$R2 | 348 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
430 | 791 | 0.104855 | CATGCCTCGTTGCTAGCCTA | 59.895 | 55.0 | 13.29 | 0.00 | 0.0 | 3.93 | F |
431 | 792 | 0.390860 | ATGCCTCGTTGCTAGCCTAG | 59.609 | 55.0 | 13.29 | 3.05 | 0.0 | 3.02 | F |
1888 | 2293 | 0.111253 | CCAAACACTCAGGCCTCCTT | 59.889 | 55.0 | 0.00 | 0.00 | 0.0 | 3.36 | F |
1893 | 2298 | 0.111253 | CACTCAGGCCTCCTTTGGTT | 59.889 | 55.0 | 0.00 | 0.00 | 0.0 | 3.67 | F |
1895 | 2300 | 0.401738 | CTCAGGCCTCCTTTGGTTCA | 59.598 | 55.0 | 0.00 | 0.00 | 0.0 | 3.18 | F |
2260 | 2665 | 0.598065 | CAAACCAAAGGAGGCCGAAG | 59.402 | 55.0 | 0.00 | 0.00 | 0.0 | 3.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1657 | 2058 | 0.110486 | ACAGGGGTGTTGCCTTACAG | 59.890 | 55.000 | 0.00 | 0.00 | 37.43 | 2.74 | R |
2241 | 2646 | 0.598065 | CTTCGGCCTCCTTTGGTTTG | 59.402 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 | R |
2714 | 3120 | 0.833287 | ATTAGGCGCACAGAGACCAT | 59.167 | 50.000 | 10.83 | 0.00 | 0.00 | 3.55 | R |
2888 | 3294 | 2.158914 | AGTGCTCATGTCACAGTCAACA | 60.159 | 45.455 | 18.13 | 0.00 | 36.93 | 3.33 | R |
2979 | 3385 | 3.359033 | TCGTATATTATGGGACGGAGGG | 58.641 | 50.000 | 0.00 | 0.00 | 36.02 | 4.30 | R |
4143 | 4553 | 5.965918 | GCTTGTGACAAGTCAAAGAGTAAAC | 59.034 | 40.000 | 24.51 | 1.59 | 41.85 | 2.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
75 | 76 | 3.680937 | GTGACGATTCACCCGTAAATGAA | 59.319 | 43.478 | 0.00 | 0.00 | 45.77 | 2.57 |
95 | 96 | 6.702972 | TGAAATTTGCGACACCATAATTTG | 57.297 | 33.333 | 0.00 | 0.00 | 30.85 | 2.32 |
158 | 160 | 3.847671 | TGAATTGACACACCCTACACA | 57.152 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
212 | 214 | 5.104109 | TGGTATAGGCTTGCACCTTTCTTAT | 60.104 | 40.000 | 0.51 | 0.00 | 41.50 | 1.73 |
213 | 215 | 6.100569 | TGGTATAGGCTTGCACCTTTCTTATA | 59.899 | 38.462 | 0.51 | 0.00 | 41.50 | 0.98 |
214 | 216 | 7.168905 | GGTATAGGCTTGCACCTTTCTTATAT | 58.831 | 38.462 | 0.51 | 0.00 | 41.50 | 0.86 |
215 | 217 | 8.319146 | GGTATAGGCTTGCACCTTTCTTATATA | 58.681 | 37.037 | 0.51 | 0.00 | 41.50 | 0.86 |
216 | 218 | 9.892130 | GTATAGGCTTGCACCTTTCTTATATAT | 57.108 | 33.333 | 0.51 | 0.00 | 41.50 | 0.86 |
303 | 330 | 1.149101 | GGGAATAGAATGCCCCCTCA | 58.851 | 55.000 | 0.00 | 0.00 | 35.76 | 3.86 |
314 | 349 | 1.061735 | TGCCCCCTCACAGATATACCA | 60.062 | 52.381 | 0.00 | 0.00 | 0.00 | 3.25 |
381 | 417 | 6.953101 | TGTAAGTTCCAGCCACATTCTATTA | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
399 | 435 | 8.876275 | TTCTATTAGTAAGTGTTGTGTCGTTT | 57.124 | 30.769 | 0.00 | 0.00 | 0.00 | 3.60 |
425 | 786 | 4.513442 | ACTTTTATCATGCCTCGTTGCTA | 58.487 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
426 | 787 | 4.572389 | ACTTTTATCATGCCTCGTTGCTAG | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.42 |
427 | 788 | 2.154854 | TATCATGCCTCGTTGCTAGC | 57.845 | 50.000 | 8.10 | 8.10 | 0.00 | 3.42 |
428 | 789 | 0.533755 | ATCATGCCTCGTTGCTAGCC | 60.534 | 55.000 | 13.29 | 0.00 | 0.00 | 3.93 |
429 | 790 | 1.153289 | CATGCCTCGTTGCTAGCCT | 60.153 | 57.895 | 13.29 | 0.00 | 0.00 | 4.58 |
430 | 791 | 0.104855 | CATGCCTCGTTGCTAGCCTA | 59.895 | 55.000 | 13.29 | 0.00 | 0.00 | 3.93 |
431 | 792 | 0.390860 | ATGCCTCGTTGCTAGCCTAG | 59.609 | 55.000 | 13.29 | 3.05 | 0.00 | 3.02 |
448 | 809 | 2.437281 | CCTAGCTTCATGATGACCTGGT | 59.563 | 50.000 | 12.54 | 0.00 | 0.00 | 4.00 |
458 | 819 | 4.371624 | TGATGACCTGGTCTCAAATGTT | 57.628 | 40.909 | 26.03 | 2.78 | 33.15 | 2.71 |
518 | 879 | 9.594936 | TTTTTGATAACAGGGGAAGAAGAATTA | 57.405 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
679 | 1052 | 1.765657 | AAAAAGCCCAGGCCTGCAA | 60.766 | 52.632 | 28.39 | 0.00 | 43.17 | 4.08 |
833 | 1220 | 1.007842 | AGAGGAGAGGGGGAGAAGAAC | 59.992 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
838 | 1225 | 2.372172 | GAGAGGGGGAGAAGAACAACAA | 59.628 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
840 | 1227 | 1.850345 | AGGGGGAGAAGAACAACAACA | 59.150 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
841 | 1228 | 1.954382 | GGGGGAGAAGAACAACAACAC | 59.046 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
842 | 1229 | 1.954382 | GGGGAGAAGAACAACAACACC | 59.046 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
843 | 1230 | 2.422945 | GGGGAGAAGAACAACAACACCT | 60.423 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
844 | 1231 | 2.879026 | GGGAGAAGAACAACAACACCTC | 59.121 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
845 | 1232 | 2.879026 | GGAGAAGAACAACAACACCTCC | 59.121 | 50.000 | 0.00 | 0.00 | 33.17 | 4.30 |
846 | 1233 | 2.544267 | GAGAAGAACAACAACACCTCCG | 59.456 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
847 | 1234 | 2.169769 | AGAAGAACAACAACACCTCCGA | 59.830 | 45.455 | 0.00 | 0.00 | 0.00 | 4.55 |
848 | 1235 | 2.930826 | AGAACAACAACACCTCCGAT | 57.069 | 45.000 | 0.00 | 0.00 | 0.00 | 4.18 |
849 | 1236 | 4.039973 | AGAAGAACAACAACACCTCCGATA | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
850 | 1237 | 3.926616 | AGAACAACAACACCTCCGATAG | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 2.08 |
858 | 1249 | 1.143277 | ACACCTCCGATAGTCCGATCT | 59.857 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
1047 | 1438 | 2.023673 | CACAAGGTGAGCAGAAACCAA | 58.976 | 47.619 | 0.00 | 0.00 | 39.05 | 3.67 |
1051 | 1442 | 1.177401 | GGTGAGCAGAAACCAATCCC | 58.823 | 55.000 | 0.00 | 0.00 | 36.41 | 3.85 |
1070 | 1461 | 2.094649 | CCCTAAGATAATCTCCGGTCGC | 60.095 | 54.545 | 0.00 | 0.00 | 0.00 | 5.19 |
1177 | 1576 | 6.884295 | TCCTGTTGGTTTATGATTACTGGAAG | 59.116 | 38.462 | 0.00 | 0.00 | 32.83 | 3.46 |
1178 | 1577 | 7.475654 | TCCTGTTGGTTTATGATTACTGGAAGT | 60.476 | 37.037 | 0.00 | 0.00 | 42.38 | 3.01 |
1586 | 1985 | 8.921670 | GTGCTATTTGGTTGGTAGTTAAATTTG | 58.078 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1595 | 1994 | 5.315348 | TGGTAGTTAAATTTGGGCGTACTT | 58.685 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1598 | 1997 | 7.066043 | TGGTAGTTAAATTTGGGCGTACTTATG | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
1600 | 1999 | 7.457024 | AGTTAAATTTGGGCGTACTTATGTT | 57.543 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1623 | 2022 | 1.094785 | CGGGCGATTGGTCAAATTCT | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1628 | 2027 | 4.879545 | GGGCGATTGGTCAAATTCTAACTA | 59.120 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1631 | 2030 | 6.355638 | GCGATTGGTCAAATTCTAACTATCG | 58.644 | 40.000 | 13.62 | 13.62 | 34.11 | 2.92 |
1657 | 2058 | 3.198409 | TGCTCATCCATGTGTGGTATC | 57.802 | 47.619 | 0.00 | 0.00 | 46.16 | 2.24 |
1679 | 2080 | 1.339929 | GTAAGGCAACACCCCTGTTTG | 59.660 | 52.381 | 0.00 | 0.00 | 38.66 | 2.93 |
1687 | 2088 | 1.318576 | CACCCCTGTTTGTCTTCACC | 58.681 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1691 | 2092 | 1.338020 | CCCTGTTTGTCTTCACCTTGC | 59.662 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
1723 | 2124 | 1.140452 | AGTCCAAGCTGATCGATGCAT | 59.860 | 47.619 | 0.54 | 0.00 | 0.00 | 3.96 |
1724 | 2125 | 1.945394 | GTCCAAGCTGATCGATGCATT | 59.055 | 47.619 | 0.54 | 0.00 | 0.00 | 3.56 |
1725 | 2126 | 2.032204 | GTCCAAGCTGATCGATGCATTC | 60.032 | 50.000 | 0.54 | 0.00 | 0.00 | 2.67 |
1726 | 2127 | 1.266175 | CCAAGCTGATCGATGCATTCC | 59.734 | 52.381 | 0.54 | 0.00 | 0.00 | 3.01 |
1727 | 2128 | 2.219458 | CAAGCTGATCGATGCATTCCT | 58.781 | 47.619 | 0.54 | 0.00 | 0.00 | 3.36 |
1728 | 2129 | 1.880271 | AGCTGATCGATGCATTCCTG | 58.120 | 50.000 | 0.54 | 0.00 | 0.00 | 3.86 |
1729 | 2130 | 0.873054 | GCTGATCGATGCATTCCTGG | 59.127 | 55.000 | 0.54 | 0.00 | 0.00 | 4.45 |
1730 | 2131 | 1.813092 | GCTGATCGATGCATTCCTGGT | 60.813 | 52.381 | 0.54 | 0.00 | 0.00 | 4.00 |
1731 | 2132 | 1.871676 | CTGATCGATGCATTCCTGGTG | 59.128 | 52.381 | 0.54 | 0.00 | 0.00 | 4.17 |
1761 | 2162 | 5.105797 | TGCCTAATCGATTTGCTTGTTTGAT | 60.106 | 36.000 | 24.08 | 0.00 | 0.00 | 2.57 |
1762 | 2163 | 5.456822 | GCCTAATCGATTTGCTTGTTTGATC | 59.543 | 40.000 | 17.19 | 0.00 | 0.00 | 2.92 |
1773 | 2177 | 4.576873 | TGCTTGTTTGATCGGTTGAAGTTA | 59.423 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1788 | 2192 | 9.245962 | CGGTTGAAGTTATTATCTACTTACAGG | 57.754 | 37.037 | 0.00 | 0.00 | 34.88 | 4.00 |
1837 | 2241 | 5.805486 | TGCTTCGGCTGAATATATTATCGTC | 59.195 | 40.000 | 8.78 | 0.00 | 42.37 | 4.20 |
1850 | 2254 | 0.735978 | TATCGTCTGCAAGTGCCACG | 60.736 | 55.000 | 15.25 | 15.25 | 43.49 | 4.94 |
1880 | 2285 | 5.476599 | TGGGAATTTGTATCCAAACACTCAG | 59.523 | 40.000 | 0.00 | 0.00 | 43.03 | 3.35 |
1881 | 2286 | 5.105756 | GGGAATTTGTATCCAAACACTCAGG | 60.106 | 44.000 | 0.00 | 0.00 | 43.03 | 3.86 |
1882 | 2287 | 5.391312 | AATTTGTATCCAAACACTCAGGC | 57.609 | 39.130 | 0.00 | 0.00 | 43.03 | 4.85 |
1883 | 2288 | 2.489938 | TGTATCCAAACACTCAGGCC | 57.510 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1884 | 2289 | 1.985159 | TGTATCCAAACACTCAGGCCT | 59.015 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
1885 | 2290 | 2.027192 | TGTATCCAAACACTCAGGCCTC | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1886 | 2291 | 0.329596 | ATCCAAACACTCAGGCCTCC | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1887 | 2292 | 0.768221 | TCCAAACACTCAGGCCTCCT | 60.768 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1888 | 2293 | 0.111253 | CCAAACACTCAGGCCTCCTT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1889 | 2294 | 1.479389 | CCAAACACTCAGGCCTCCTTT | 60.479 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
1890 | 2295 | 1.610522 | CAAACACTCAGGCCTCCTTTG | 59.389 | 52.381 | 0.00 | 2.50 | 0.00 | 2.77 |
1891 | 2296 | 0.111253 | AACACTCAGGCCTCCTTTGG | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1892 | 2297 | 1.062488 | ACACTCAGGCCTCCTTTGGT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1893 | 2298 | 0.111253 | CACTCAGGCCTCCTTTGGTT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1894 | 2299 | 0.402121 | ACTCAGGCCTCCTTTGGTTC | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1895 | 2300 | 0.401738 | CTCAGGCCTCCTTTGGTTCA | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1896 | 2301 | 1.005215 | CTCAGGCCTCCTTTGGTTCAT | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1897 | 2302 | 2.239654 | CTCAGGCCTCCTTTGGTTCATA | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1898 | 2303 | 2.239654 | TCAGGCCTCCTTTGGTTCATAG | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1899 | 2304 | 1.566231 | AGGCCTCCTTTGGTTCATAGG | 59.434 | 52.381 | 0.00 | 0.00 | 34.61 | 2.57 |
1900 | 2305 | 1.564348 | GGCCTCCTTTGGTTCATAGGA | 59.436 | 52.381 | 0.00 | 6.86 | 38.81 | 2.94 |
1901 | 2306 | 2.025321 | GGCCTCCTTTGGTTCATAGGAA | 60.025 | 50.000 | 0.00 | 0.00 | 40.12 | 3.36 |
1902 | 2307 | 3.373110 | GGCCTCCTTTGGTTCATAGGAAT | 60.373 | 47.826 | 0.00 | 0.00 | 40.12 | 3.01 |
1903 | 2308 | 4.141251 | GGCCTCCTTTGGTTCATAGGAATA | 60.141 | 45.833 | 0.00 | 0.00 | 40.12 | 1.75 |
1904 | 2309 | 5.458215 | GGCCTCCTTTGGTTCATAGGAATAT | 60.458 | 44.000 | 0.00 | 0.00 | 40.12 | 1.28 |
1905 | 2310 | 6.071320 | GCCTCCTTTGGTTCATAGGAATATT | 58.929 | 40.000 | 8.11 | 0.00 | 40.12 | 1.28 |
1906 | 2311 | 6.015940 | GCCTCCTTTGGTTCATAGGAATATTG | 60.016 | 42.308 | 8.11 | 0.00 | 40.12 | 1.90 |
1907 | 2312 | 7.062957 | CCTCCTTTGGTTCATAGGAATATTGT | 58.937 | 38.462 | 8.11 | 0.00 | 40.12 | 2.71 |
1908 | 2313 | 8.217799 | CCTCCTTTGGTTCATAGGAATATTGTA | 58.782 | 37.037 | 8.11 | 0.00 | 40.12 | 2.41 |
1909 | 2314 | 9.277783 | CTCCTTTGGTTCATAGGAATATTGTAG | 57.722 | 37.037 | 8.11 | 0.00 | 40.12 | 2.74 |
1910 | 2315 | 8.217799 | TCCTTTGGTTCATAGGAATATTGTAGG | 58.782 | 37.037 | 4.94 | 0.00 | 38.33 | 3.18 |
1911 | 2316 | 8.217799 | CCTTTGGTTCATAGGAATATTGTAGGA | 58.782 | 37.037 | 0.00 | 0.00 | 35.14 | 2.94 |
1912 | 2317 | 9.627123 | CTTTGGTTCATAGGAATATTGTAGGAA | 57.373 | 33.333 | 0.00 | 0.00 | 35.05 | 3.36 |
1943 | 2348 | 9.601810 | AAAGGATAGGAACTTTGTAGGAAAAAT | 57.398 | 29.630 | 0.00 | 0.00 | 41.75 | 1.82 |
1944 | 2349 | 9.601810 | AAGGATAGGAACTTTGTAGGAAAAATT | 57.398 | 29.630 | 0.00 | 0.00 | 41.75 | 1.82 |
1955 | 2360 | 8.880878 | TTTGTAGGAAAAATTACTTTGAAGGC | 57.119 | 30.769 | 0.00 | 0.00 | 0.00 | 4.35 |
1956 | 2361 | 6.988522 | TGTAGGAAAAATTACTTTGAAGGCC | 58.011 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1957 | 2362 | 6.780522 | TGTAGGAAAAATTACTTTGAAGGCCT | 59.219 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
1958 | 2363 | 6.346477 | AGGAAAAATTACTTTGAAGGCCTC | 57.654 | 37.500 | 5.23 | 0.00 | 0.00 | 4.70 |
1959 | 2364 | 6.077993 | AGGAAAAATTACTTTGAAGGCCTCT | 58.922 | 36.000 | 5.23 | 0.00 | 0.00 | 3.69 |
1960 | 2365 | 6.554982 | AGGAAAAATTACTTTGAAGGCCTCTT | 59.445 | 34.615 | 5.23 | 0.00 | 35.62 | 2.85 |
1961 | 2366 | 7.071196 | AGGAAAAATTACTTTGAAGGCCTCTTT | 59.929 | 33.333 | 5.23 | 0.00 | 32.52 | 2.52 |
1962 | 2367 | 7.715249 | GGAAAAATTACTTTGAAGGCCTCTTTT | 59.285 | 33.333 | 5.23 | 0.00 | 32.52 | 2.27 |
1963 | 2368 | 8.437360 | AAAAATTACTTTGAAGGCCTCTTTTG | 57.563 | 30.769 | 5.23 | 0.00 | 32.52 | 2.44 |
1964 | 2369 | 5.728637 | ATTACTTTGAAGGCCTCTTTTGG | 57.271 | 39.130 | 5.23 | 0.00 | 32.52 | 3.28 |
1965 | 2370 | 3.032265 | ACTTTGAAGGCCTCTTTTGGT | 57.968 | 42.857 | 5.23 | 0.00 | 32.52 | 3.67 |
1966 | 2371 | 3.374764 | ACTTTGAAGGCCTCTTTTGGTT | 58.625 | 40.909 | 5.23 | 0.00 | 32.52 | 3.67 |
1967 | 2372 | 3.384789 | ACTTTGAAGGCCTCTTTTGGTTC | 59.615 | 43.478 | 5.23 | 0.00 | 32.52 | 3.62 |
1968 | 2373 | 2.746279 | TGAAGGCCTCTTTTGGTTCA | 57.254 | 45.000 | 5.23 | 0.00 | 32.52 | 3.18 |
1969 | 2374 | 3.243359 | TGAAGGCCTCTTTTGGTTCAT | 57.757 | 42.857 | 5.23 | 0.00 | 32.52 | 2.57 |
1970 | 2375 | 4.380843 | TGAAGGCCTCTTTTGGTTCATA | 57.619 | 40.909 | 5.23 | 0.00 | 32.52 | 2.15 |
1971 | 2376 | 4.335416 | TGAAGGCCTCTTTTGGTTCATAG | 58.665 | 43.478 | 5.23 | 0.00 | 32.52 | 2.23 |
1972 | 2377 | 3.372440 | AGGCCTCTTTTGGTTCATAGG | 57.628 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1973 | 2378 | 2.919602 | AGGCCTCTTTTGGTTCATAGGA | 59.080 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
1974 | 2379 | 3.529319 | AGGCCTCTTTTGGTTCATAGGAT | 59.471 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
1975 | 2380 | 4.726825 | AGGCCTCTTTTGGTTCATAGGATA | 59.273 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1976 | 2381 | 5.066593 | GGCCTCTTTTGGTTCATAGGATAG | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
1977 | 2382 | 5.066593 | GCCTCTTTTGGTTCATAGGATAGG | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
1978 | 2383 | 5.163195 | GCCTCTTTTGGTTCATAGGATAGGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1979 | 2384 | 6.466470 | GCCTCTTTTGGTTCATAGGATAGGAT | 60.466 | 42.308 | 0.00 | 0.00 | 28.27 | 3.24 |
1980 | 2385 | 7.521669 | CCTCTTTTGGTTCATAGGATAGGATT | 58.478 | 38.462 | 0.00 | 0.00 | 28.27 | 3.01 |
1981 | 2386 | 8.660435 | CCTCTTTTGGTTCATAGGATAGGATTA | 58.340 | 37.037 | 0.00 | 0.00 | 28.27 | 1.75 |
1984 | 2389 | 9.155975 | CTTTTGGTTCATAGGATAGGATTATCG | 57.844 | 37.037 | 0.00 | 0.00 | 37.20 | 2.92 |
1985 | 2390 | 7.792364 | TTGGTTCATAGGATAGGATTATCGT | 57.208 | 36.000 | 0.00 | 0.00 | 37.20 | 3.73 |
1986 | 2391 | 8.888836 | TTGGTTCATAGGATAGGATTATCGTA | 57.111 | 34.615 | 0.00 | 0.00 | 39.58 | 3.43 |
1987 | 2392 | 8.521170 | TGGTTCATAGGATAGGATTATCGTAG | 57.479 | 38.462 | 1.23 | 0.00 | 39.00 | 3.51 |
1988 | 2393 | 7.560262 | TGGTTCATAGGATAGGATTATCGTAGG | 59.440 | 40.741 | 1.23 | 3.78 | 39.00 | 3.18 |
1989 | 2394 | 7.778853 | GGTTCATAGGATAGGATTATCGTAGGA | 59.221 | 40.741 | 7.24 | 7.24 | 41.67 | 2.94 |
1990 | 2395 | 9.186837 | GTTCATAGGATAGGATTATCGTAGGAA | 57.813 | 37.037 | 14.87 | 14.87 | 45.40 | 3.36 |
1991 | 2396 | 9.937876 | TTCATAGGATAGGATTATCGTAGGAAT | 57.062 | 33.333 | 14.87 | 0.00 | 44.20 | 3.01 |
1995 | 2400 | 8.115490 | AGGATAGGATTATCGTAGGAATAGGA | 57.885 | 38.462 | 1.23 | 0.00 | 37.20 | 2.94 |
1996 | 2401 | 8.566979 | AGGATAGGATTATCGTAGGAATAGGAA | 58.433 | 37.037 | 1.23 | 0.00 | 37.20 | 3.36 |
1997 | 2402 | 9.369672 | GGATAGGATTATCGTAGGAATAGGAAT | 57.630 | 37.037 | 1.23 | 0.00 | 37.20 | 3.01 |
1999 | 2404 | 7.663043 | AGGATTATCGTAGGAATAGGAATCC | 57.337 | 40.000 | 13.22 | 13.22 | 37.22 | 3.01 |
2001 | 2406 | 7.343316 | AGGATTATCGTAGGAATAGGAATCCTG | 59.657 | 40.741 | 12.96 | 0.00 | 46.72 | 3.86 |
2002 | 2407 | 7.124448 | GGATTATCGTAGGAATAGGAATCCTGT | 59.876 | 40.741 | 12.96 | 1.37 | 46.72 | 4.00 |
2003 | 2408 | 9.186837 | GATTATCGTAGGAATAGGAATCCTGTA | 57.813 | 37.037 | 12.96 | 0.00 | 46.72 | 2.74 |
2004 | 2409 | 8.577048 | TTATCGTAGGAATAGGAATCCTGTAG | 57.423 | 38.462 | 12.96 | 0.00 | 46.72 | 2.74 |
2005 | 2410 | 5.322754 | TCGTAGGAATAGGAATCCTGTAGG | 58.677 | 45.833 | 12.96 | 0.00 | 46.72 | 3.18 |
2006 | 2411 | 5.074102 | TCGTAGGAATAGGAATCCTGTAGGA | 59.926 | 44.000 | 12.96 | 2.58 | 46.72 | 2.94 |
2020 | 2425 | 5.922053 | TCCTGTAGGAAATGAGATGACATG | 58.078 | 41.667 | 0.00 | 0.00 | 42.18 | 3.21 |
2021 | 2426 | 5.426509 | TCCTGTAGGAAATGAGATGACATGT | 59.573 | 40.000 | 0.00 | 0.00 | 42.18 | 3.21 |
2022 | 2427 | 6.611236 | TCCTGTAGGAAATGAGATGACATGTA | 59.389 | 38.462 | 0.00 | 0.00 | 42.18 | 2.29 |
2023 | 2428 | 7.290948 | TCCTGTAGGAAATGAGATGACATGTAT | 59.709 | 37.037 | 0.00 | 0.00 | 42.18 | 2.29 |
2024 | 2429 | 7.601886 | CCTGTAGGAAATGAGATGACATGTATC | 59.398 | 40.741 | 0.00 | 2.87 | 37.39 | 2.24 |
2025 | 2430 | 8.255111 | TGTAGGAAATGAGATGACATGTATCT | 57.745 | 34.615 | 14.05 | 14.05 | 37.59 | 1.98 |
2026 | 2431 | 8.363390 | TGTAGGAAATGAGATGACATGTATCTC | 58.637 | 37.037 | 24.04 | 24.04 | 46.82 | 2.75 |
2036 | 2441 | 9.368674 | GAGATGACATGTATCTCAAATCCTATG | 57.631 | 37.037 | 24.95 | 0.00 | 46.22 | 2.23 |
2037 | 2442 | 9.097946 | AGATGACATGTATCTCAAATCCTATGA | 57.902 | 33.333 | 0.00 | 0.00 | 29.05 | 2.15 |
2038 | 2443 | 9.368674 | GATGACATGTATCTCAAATCCTATGAG | 57.631 | 37.037 | 0.00 | 0.00 | 44.53 | 2.90 |
2039 | 2444 | 8.255111 | TGACATGTATCTCAAATCCTATGAGT | 57.745 | 34.615 | 0.00 | 0.00 | 43.77 | 3.41 |
2040 | 2445 | 9.367160 | TGACATGTATCTCAAATCCTATGAGTA | 57.633 | 33.333 | 0.00 | 0.00 | 43.77 | 2.59 |
2041 | 2446 | 9.853555 | GACATGTATCTCAAATCCTATGAGTAG | 57.146 | 37.037 | 0.00 | 0.00 | 43.77 | 2.57 |
2056 | 2461 | 7.747155 | CTATGAGTAGGAATAGGAAACGAGA | 57.253 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
2057 | 2462 | 8.343168 | CTATGAGTAGGAATAGGAAACGAGAT | 57.657 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
2058 | 2463 | 6.392625 | TGAGTAGGAATAGGAAACGAGATG | 57.607 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2059 | 2464 | 5.892119 | TGAGTAGGAATAGGAAACGAGATGT | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2060 | 2465 | 6.039493 | TGAGTAGGAATAGGAAACGAGATGTC | 59.961 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
2061 | 2466 | 5.892119 | AGTAGGAATAGGAAACGAGATGTCA | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2062 | 2467 | 5.878406 | AGGAATAGGAAACGAGATGTCAT | 57.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2063 | 2468 | 6.240549 | AGGAATAGGAAACGAGATGTCATT | 57.759 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2064 | 2469 | 6.653989 | AGGAATAGGAAACGAGATGTCATTT | 58.346 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2065 | 2470 | 6.540189 | AGGAATAGGAAACGAGATGTCATTTG | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
2066 | 2471 | 6.238484 | GGAATAGGAAACGAGATGTCATTTGG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.28 |
2067 | 2472 | 4.021102 | AGGAAACGAGATGTCATTTGGT | 57.979 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
2068 | 2473 | 4.398319 | AGGAAACGAGATGTCATTTGGTT | 58.602 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2069 | 2474 | 4.216257 | AGGAAACGAGATGTCATTTGGTTG | 59.784 | 41.667 | 4.80 | 0.00 | 0.00 | 3.77 |
2070 | 2475 | 4.215399 | GGAAACGAGATGTCATTTGGTTGA | 59.785 | 41.667 | 4.80 | 0.00 | 0.00 | 3.18 |
2071 | 2476 | 4.749245 | AACGAGATGTCATTTGGTTGAC | 57.251 | 40.909 | 3.39 | 0.00 | 45.05 | 3.18 |
2087 | 2492 | 5.984233 | GGTTGACACCAAAGGAATTTTTC | 57.016 | 39.130 | 0.00 | 0.00 | 43.61 | 2.29 |
2088 | 2493 | 4.814234 | GGTTGACACCAAAGGAATTTTTCC | 59.186 | 41.667 | 0.00 | 0.00 | 45.80 | 3.13 |
2089 | 2494 | 5.627968 | GGTTGACACCAAAGGAATTTTTCCA | 60.628 | 40.000 | 8.87 | 0.00 | 46.88 | 3.53 |
2090 | 2495 | 6.911529 | GGTTGACACCAAAGGAATTTTTCCAT | 60.912 | 38.462 | 8.87 | 0.00 | 46.88 | 3.41 |
2091 | 2496 | 8.334633 | GGTTGACACCAAAGGAATTTTTCCATT | 61.335 | 37.037 | 8.87 | 0.31 | 46.88 | 3.16 |
2102 | 2507 | 6.765915 | GAATTTTTCCATTGAGTCTAGGCT | 57.234 | 37.500 | 0.00 | 0.00 | 0.00 | 4.58 |
2103 | 2508 | 6.765915 | AATTTTTCCATTGAGTCTAGGCTC | 57.234 | 37.500 | 17.74 | 17.74 | 36.12 | 4.70 |
2104 | 2509 | 4.908601 | TTTTCCATTGAGTCTAGGCTCA | 57.091 | 40.909 | 23.07 | 23.07 | 43.03 | 4.26 |
2105 | 2510 | 5.441718 | TTTTCCATTGAGTCTAGGCTCAT | 57.558 | 39.130 | 26.91 | 14.39 | 43.99 | 2.90 |
2106 | 2511 | 5.441718 | TTTCCATTGAGTCTAGGCTCATT | 57.558 | 39.130 | 26.91 | 20.33 | 43.99 | 2.57 |
2107 | 2512 | 5.441718 | TTCCATTGAGTCTAGGCTCATTT | 57.558 | 39.130 | 26.91 | 15.12 | 43.99 | 2.32 |
2108 | 2513 | 5.441718 | TCCATTGAGTCTAGGCTCATTTT | 57.558 | 39.130 | 26.91 | 12.69 | 43.99 | 1.82 |
2109 | 2514 | 5.819991 | TCCATTGAGTCTAGGCTCATTTTT | 58.180 | 37.500 | 26.91 | 10.30 | 43.99 | 1.94 |
2110 | 2515 | 6.957631 | TCCATTGAGTCTAGGCTCATTTTTA | 58.042 | 36.000 | 26.91 | 12.75 | 43.99 | 1.52 |
2111 | 2516 | 7.577303 | TCCATTGAGTCTAGGCTCATTTTTAT | 58.423 | 34.615 | 26.91 | 14.49 | 43.99 | 1.40 |
2112 | 2517 | 8.055181 | TCCATTGAGTCTAGGCTCATTTTTATT | 58.945 | 33.333 | 26.91 | 4.66 | 43.99 | 1.40 |
2113 | 2518 | 8.689972 | CCATTGAGTCTAGGCTCATTTTTATTT | 58.310 | 33.333 | 26.91 | 3.37 | 43.99 | 1.40 |
2116 | 2521 | 8.281212 | TGAGTCTAGGCTCATTTTTATTTTCC | 57.719 | 34.615 | 23.07 | 0.00 | 40.23 | 3.13 |
2117 | 2522 | 8.109634 | TGAGTCTAGGCTCATTTTTATTTTCCT | 58.890 | 33.333 | 23.07 | 0.00 | 40.23 | 3.36 |
2118 | 2523 | 9.614792 | GAGTCTAGGCTCATTTTTATTTTCCTA | 57.385 | 33.333 | 19.57 | 0.00 | 35.67 | 2.94 |
2137 | 2542 | 9.973661 | TTTTCCTATGAAATGTGAAGATAGGAA | 57.026 | 29.630 | 12.66 | 12.66 | 46.75 | 3.36 |
2138 | 2543 | 8.964476 | TTCCTATGAAATGTGAAGATAGGAAC | 57.036 | 34.615 | 12.66 | 0.00 | 44.97 | 3.62 |
2139 | 2544 | 7.509546 | TCCTATGAAATGTGAAGATAGGAACC | 58.490 | 38.462 | 0.00 | 0.00 | 41.02 | 3.62 |
2140 | 2545 | 7.127186 | TCCTATGAAATGTGAAGATAGGAACCA | 59.873 | 37.037 | 0.00 | 0.00 | 41.02 | 3.67 |
2141 | 2546 | 7.775093 | CCTATGAAATGTGAAGATAGGAACCAA | 59.225 | 37.037 | 0.00 | 0.00 | 38.55 | 3.67 |
2142 | 2547 | 9.347240 | CTATGAAATGTGAAGATAGGAACCAAT | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2143 | 2548 | 7.630242 | TGAAATGTGAAGATAGGAACCAATC | 57.370 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2181 | 2586 | 6.396829 | GAATCCATTCCTATGAACCAAAGG | 57.603 | 41.667 | 0.00 | 0.00 | 33.37 | 3.11 |
2182 | 2587 | 4.249638 | TCCATTCCTATGAACCAAAGGG | 57.750 | 45.455 | 0.00 | 0.00 | 35.37 | 3.95 |
2183 | 2588 | 2.695147 | CCATTCCTATGAACCAAAGGGC | 59.305 | 50.000 | 0.00 | 0.00 | 33.50 | 5.19 |
2184 | 2589 | 3.628257 | CCATTCCTATGAACCAAAGGGCT | 60.628 | 47.826 | 0.00 | 0.00 | 33.50 | 5.19 |
2185 | 2590 | 3.366052 | TTCCTATGAACCAAAGGGCTC | 57.634 | 47.619 | 0.00 | 0.00 | 37.90 | 4.70 |
2186 | 2591 | 2.562296 | TCCTATGAACCAAAGGGCTCT | 58.438 | 47.619 | 0.00 | 0.00 | 37.90 | 4.09 |
2187 | 2592 | 3.731431 | TCCTATGAACCAAAGGGCTCTA | 58.269 | 45.455 | 0.00 | 0.00 | 37.90 | 2.43 |
2188 | 2593 | 4.108570 | TCCTATGAACCAAAGGGCTCTAA | 58.891 | 43.478 | 0.00 | 0.00 | 37.90 | 2.10 |
2189 | 2594 | 4.538490 | TCCTATGAACCAAAGGGCTCTAAA | 59.462 | 41.667 | 0.00 | 0.00 | 37.90 | 1.85 |
2190 | 2595 | 4.884164 | CCTATGAACCAAAGGGCTCTAAAG | 59.116 | 45.833 | 0.00 | 0.00 | 37.90 | 1.85 |
2191 | 2596 | 3.154827 | TGAACCAAAGGGCTCTAAAGG | 57.845 | 47.619 | 0.00 | 0.00 | 37.90 | 3.11 |
2192 | 2597 | 2.714250 | TGAACCAAAGGGCTCTAAAGGA | 59.286 | 45.455 | 5.94 | 0.00 | 37.90 | 3.36 |
2193 | 2598 | 3.139397 | TGAACCAAAGGGCTCTAAAGGAA | 59.861 | 43.478 | 5.94 | 0.00 | 37.90 | 3.36 |
2194 | 2599 | 3.895704 | ACCAAAGGGCTCTAAAGGAAA | 57.104 | 42.857 | 5.94 | 0.00 | 37.90 | 3.13 |
2195 | 2600 | 4.193240 | ACCAAAGGGCTCTAAAGGAAAA | 57.807 | 40.909 | 5.94 | 0.00 | 37.90 | 2.29 |
2196 | 2601 | 4.552674 | ACCAAAGGGCTCTAAAGGAAAAA | 58.447 | 39.130 | 5.94 | 0.00 | 37.90 | 1.94 |
2231 | 2636 | 9.713684 | AGAATCCTATCCTCTAGAATTCCTATG | 57.286 | 37.037 | 0.65 | 0.00 | 0.00 | 2.23 |
2232 | 2637 | 9.707957 | GAATCCTATCCTCTAGAATTCCTATGA | 57.292 | 37.037 | 0.65 | 0.00 | 0.00 | 2.15 |
2239 | 2644 | 8.805145 | TCCTCTAGAATTCCTATGAAATTCCT | 57.195 | 34.615 | 0.65 | 0.00 | 33.32 | 3.36 |
2240 | 2645 | 8.875168 | TCCTCTAGAATTCCTATGAAATTCCTC | 58.125 | 37.037 | 0.65 | 0.00 | 33.32 | 3.71 |
2241 | 2646 | 8.100164 | CCTCTAGAATTCCTATGAAATTCCTCC | 58.900 | 40.741 | 0.65 | 0.00 | 33.32 | 4.30 |
2242 | 2647 | 8.567198 | TCTAGAATTCCTATGAAATTCCTCCA | 57.433 | 34.615 | 0.65 | 0.00 | 33.32 | 3.86 |
2243 | 2648 | 9.003145 | TCTAGAATTCCTATGAAATTCCTCCAA | 57.997 | 33.333 | 0.65 | 0.00 | 33.32 | 3.53 |
2244 | 2649 | 9.632638 | CTAGAATTCCTATGAAATTCCTCCAAA | 57.367 | 33.333 | 0.65 | 0.00 | 33.32 | 3.28 |
2245 | 2650 | 8.298729 | AGAATTCCTATGAAATTCCTCCAAAC | 57.701 | 34.615 | 0.65 | 0.00 | 33.32 | 2.93 |
2246 | 2651 | 7.343057 | AGAATTCCTATGAAATTCCTCCAAACC | 59.657 | 37.037 | 0.65 | 0.00 | 33.32 | 3.27 |
2247 | 2652 | 5.528600 | TCCTATGAAATTCCTCCAAACCA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2248 | 2653 | 5.898120 | TCCTATGAAATTCCTCCAAACCAA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
2249 | 2654 | 6.318913 | TCCTATGAAATTCCTCCAAACCAAA | 58.681 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2250 | 2655 | 6.437162 | TCCTATGAAATTCCTCCAAACCAAAG | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
2251 | 2656 | 4.953940 | TGAAATTCCTCCAAACCAAAGG | 57.046 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
2252 | 2657 | 4.551671 | TGAAATTCCTCCAAACCAAAGGA | 58.448 | 39.130 | 0.00 | 0.00 | 37.42 | 3.36 |
2256 | 2661 | 2.658548 | CTCCAAACCAAAGGAGGCC | 58.341 | 57.895 | 0.00 | 0.00 | 46.11 | 5.19 |
2257 | 2662 | 1.228429 | TCCAAACCAAAGGAGGCCG | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
2258 | 2663 | 1.228429 | CCAAACCAAAGGAGGCCGA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
2259 | 2664 | 0.825840 | CCAAACCAAAGGAGGCCGAA | 60.826 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2260 | 2665 | 0.598065 | CAAACCAAAGGAGGCCGAAG | 59.402 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2261 | 2666 | 1.179174 | AAACCAAAGGAGGCCGAAGC | 61.179 | 55.000 | 0.00 | 0.00 | 38.76 | 3.86 |
2271 | 2676 | 3.455152 | GCCGAAGCCCTTTGGTTT | 58.545 | 55.556 | 14.26 | 0.00 | 44.32 | 3.27 |
2272 | 2677 | 1.006220 | GCCGAAGCCCTTTGGTTTG | 60.006 | 57.895 | 14.26 | 0.00 | 44.32 | 2.93 |
2273 | 2678 | 1.744320 | GCCGAAGCCCTTTGGTTTGT | 61.744 | 55.000 | 14.26 | 0.00 | 44.32 | 2.83 |
2274 | 2679 | 1.611519 | CCGAAGCCCTTTGGTTTGTA | 58.388 | 50.000 | 6.20 | 0.00 | 38.93 | 2.41 |
2275 | 2680 | 1.539827 | CCGAAGCCCTTTGGTTTGTAG | 59.460 | 52.381 | 6.20 | 0.00 | 38.93 | 2.74 |
2276 | 2681 | 1.539827 | CGAAGCCCTTTGGTTTGTAGG | 59.460 | 52.381 | 0.00 | 0.00 | 34.87 | 3.18 |
2277 | 2682 | 2.812613 | CGAAGCCCTTTGGTTTGTAGGA | 60.813 | 50.000 | 0.00 | 0.00 | 34.87 | 2.94 |
2278 | 2683 | 3.227614 | GAAGCCCTTTGGTTTGTAGGAA | 58.772 | 45.455 | 0.00 | 0.00 | 34.87 | 3.36 |
2279 | 2684 | 3.542969 | AGCCCTTTGGTTTGTAGGAAT | 57.457 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
2280 | 2685 | 3.165071 | AGCCCTTTGGTTTGTAGGAATG | 58.835 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
2281 | 2686 | 2.233676 | GCCCTTTGGTTTGTAGGAATGG | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2282 | 2687 | 3.773560 | CCCTTTGGTTTGTAGGAATGGA | 58.226 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2283 | 2688 | 4.352893 | CCCTTTGGTTTGTAGGAATGGAT | 58.647 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2284 | 2689 | 4.777366 | CCCTTTGGTTTGTAGGAATGGATT | 59.223 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2285 | 2690 | 5.105351 | CCCTTTGGTTTGTAGGAATGGATTC | 60.105 | 44.000 | 0.00 | 0.00 | 36.08 | 2.52 |
2328 | 2733 | 7.823149 | GGAATCAATCCTTCACATTTCAAAG | 57.177 | 36.000 | 0.00 | 0.00 | 45.56 | 2.77 |
2329 | 2734 | 6.815142 | GGAATCAATCCTTCACATTTCAAAGG | 59.185 | 38.462 | 0.00 | 0.00 | 45.56 | 3.11 |
2357 | 2762 | 8.682936 | AAAATACATTAGCCTAGACTCAATGG | 57.317 | 34.615 | 0.00 | 0.00 | 32.20 | 3.16 |
2358 | 2763 | 7.618019 | AATACATTAGCCTAGACTCAATGGA | 57.382 | 36.000 | 0.00 | 0.00 | 32.20 | 3.41 |
2359 | 2764 | 5.957771 | ACATTAGCCTAGACTCAATGGAA | 57.042 | 39.130 | 0.00 | 0.00 | 32.20 | 3.53 |
2360 | 2765 | 6.313519 | ACATTAGCCTAGACTCAATGGAAA | 57.686 | 37.500 | 0.00 | 0.00 | 32.20 | 3.13 |
2361 | 2766 | 6.721318 | ACATTAGCCTAGACTCAATGGAAAA | 58.279 | 36.000 | 0.00 | 0.00 | 32.20 | 2.29 |
2362 | 2767 | 7.175104 | ACATTAGCCTAGACTCAATGGAAAAA | 58.825 | 34.615 | 0.00 | 0.00 | 32.20 | 1.94 |
2363 | 2768 | 7.836183 | ACATTAGCCTAGACTCAATGGAAAAAT | 59.164 | 33.333 | 0.00 | 0.00 | 32.20 | 1.82 |
2364 | 2769 | 8.689972 | CATTAGCCTAGACTCAATGGAAAAATT | 58.310 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2365 | 2770 | 6.765915 | AGCCTAGACTCAATGGAAAAATTC | 57.234 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2380 | 2785 | 7.765695 | GGAAAAATTCCTATCCTATGCATCA | 57.234 | 36.000 | 0.19 | 0.00 | 46.57 | 3.07 |
2381 | 2786 | 8.181904 | GGAAAAATTCCTATCCTATGCATCAA | 57.818 | 34.615 | 0.19 | 0.00 | 46.57 | 2.57 |
2382 | 2787 | 8.641541 | GGAAAAATTCCTATCCTATGCATCAAA | 58.358 | 33.333 | 0.19 | 0.00 | 46.57 | 2.69 |
2384 | 2789 | 9.991906 | AAAAATTCCTATCCTATGCATCAAATG | 57.008 | 29.630 | 0.19 | 0.00 | 0.00 | 2.32 |
2385 | 2790 | 8.945195 | AAATTCCTATCCTATGCATCAAATGA | 57.055 | 30.769 | 0.19 | 0.00 | 0.00 | 2.57 |
2386 | 2791 | 7.934855 | ATTCCTATCCTATGCATCAAATGAC | 57.065 | 36.000 | 0.19 | 0.00 | 0.00 | 3.06 |
2387 | 2792 | 6.438186 | TCCTATCCTATGCATCAAATGACA | 57.562 | 37.500 | 0.19 | 0.00 | 0.00 | 3.58 |
2388 | 2793 | 7.024345 | TCCTATCCTATGCATCAAATGACAT | 57.976 | 36.000 | 0.19 | 0.00 | 33.67 | 3.06 |
2389 | 2794 | 7.108194 | TCCTATCCTATGCATCAAATGACATC | 58.892 | 38.462 | 0.19 | 0.00 | 32.25 | 3.06 |
2390 | 2795 | 7.037802 | TCCTATCCTATGCATCAAATGACATCT | 60.038 | 37.037 | 0.19 | 0.00 | 32.25 | 2.90 |
2391 | 2796 | 7.280428 | CCTATCCTATGCATCAAATGACATCTC | 59.720 | 40.741 | 0.19 | 0.00 | 32.25 | 2.75 |
2392 | 2797 | 6.183810 | TCCTATGCATCAAATGACATCTCT | 57.816 | 37.500 | 0.19 | 0.00 | 32.25 | 3.10 |
2393 | 2798 | 6.598503 | TCCTATGCATCAAATGACATCTCTT | 58.401 | 36.000 | 0.19 | 0.00 | 32.25 | 2.85 |
2394 | 2799 | 7.058525 | TCCTATGCATCAAATGACATCTCTTT | 58.941 | 34.615 | 0.19 | 0.00 | 32.25 | 2.52 |
2395 | 2800 | 7.228108 | TCCTATGCATCAAATGACATCTCTTTC | 59.772 | 37.037 | 0.19 | 0.00 | 32.25 | 2.62 |
2396 | 2801 | 7.228906 | CCTATGCATCAAATGACATCTCTTTCT | 59.771 | 37.037 | 0.19 | 0.00 | 32.25 | 2.52 |
2397 | 2802 | 6.829229 | TGCATCAAATGACATCTCTTTCTT | 57.171 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2398 | 2803 | 7.223260 | TGCATCAAATGACATCTCTTTCTTT | 57.777 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2399 | 2804 | 8.339344 | TGCATCAAATGACATCTCTTTCTTTA | 57.661 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
2400 | 2805 | 8.963725 | TGCATCAAATGACATCTCTTTCTTTAT | 58.036 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2414 | 2819 | 9.113838 | TCTCTTTCTTTATAGGAATTGTGATGC | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2415 | 2820 | 8.806429 | TCTTTCTTTATAGGAATTGTGATGCA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
2416 | 2821 | 9.412460 | TCTTTCTTTATAGGAATTGTGATGCAT | 57.588 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
2417 | 2822 | 9.459640 | CTTTCTTTATAGGAATTGTGATGCATG | 57.540 | 33.333 | 2.46 | 0.00 | 0.00 | 4.06 |
2418 | 2823 | 8.523915 | TTCTTTATAGGAATTGTGATGCATGT | 57.476 | 30.769 | 2.46 | 0.00 | 0.00 | 3.21 |
2419 | 2824 | 8.158169 | TCTTTATAGGAATTGTGATGCATGTC | 57.842 | 34.615 | 2.46 | 0.00 | 0.00 | 3.06 |
2420 | 2825 | 7.774625 | TCTTTATAGGAATTGTGATGCATGTCA | 59.225 | 33.333 | 2.46 | 0.00 | 0.00 | 3.58 |
2421 | 2826 | 8.467963 | TTTATAGGAATTGTGATGCATGTCAT | 57.532 | 30.769 | 2.46 | 2.78 | 38.32 | 3.06 |
2430 | 2835 | 1.952296 | GATGCATGTCATCCCACTTCC | 59.048 | 52.381 | 2.46 | 0.00 | 44.54 | 3.46 |
2431 | 2836 | 0.994247 | TGCATGTCATCCCACTTCCT | 59.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2432 | 2837 | 2.195727 | TGCATGTCATCCCACTTCCTA | 58.804 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
2433 | 2838 | 2.779430 | TGCATGTCATCCCACTTCCTAT | 59.221 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2434 | 2839 | 3.144506 | GCATGTCATCCCACTTCCTATG | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2435 | 2840 | 3.181451 | GCATGTCATCCCACTTCCTATGA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
2436 | 2841 | 4.506271 | GCATGTCATCCCACTTCCTATGAT | 60.506 | 45.833 | 0.00 | 0.00 | 31.49 | 2.45 |
2437 | 2842 | 5.628130 | CATGTCATCCCACTTCCTATGATT | 58.372 | 41.667 | 0.00 | 0.00 | 31.49 | 2.57 |
2438 | 2843 | 5.715439 | TGTCATCCCACTTCCTATGATTT | 57.285 | 39.130 | 0.00 | 0.00 | 31.49 | 2.17 |
2439 | 2844 | 6.078456 | TGTCATCCCACTTCCTATGATTTT | 57.922 | 37.500 | 0.00 | 0.00 | 31.49 | 1.82 |
2440 | 2845 | 6.122277 | TGTCATCCCACTTCCTATGATTTTC | 58.878 | 40.000 | 0.00 | 0.00 | 31.49 | 2.29 |
2441 | 2846 | 5.532779 | GTCATCCCACTTCCTATGATTTTCC | 59.467 | 44.000 | 0.00 | 0.00 | 31.49 | 3.13 |
2442 | 2847 | 5.433051 | TCATCCCACTTCCTATGATTTTCCT | 59.567 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2443 | 2848 | 6.619437 | TCATCCCACTTCCTATGATTTTCCTA | 59.381 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2444 | 2849 | 7.295672 | TCATCCCACTTCCTATGATTTTCCTAT | 59.704 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2445 | 2850 | 8.605947 | CATCCCACTTCCTATGATTTTCCTATA | 58.394 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
2446 | 2851 | 7.974504 | TCCCACTTCCTATGATTTTCCTATAC | 58.025 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
2447 | 2852 | 7.794683 | TCCCACTTCCTATGATTTTCCTATACT | 59.205 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2448 | 2853 | 9.101325 | CCCACTTCCTATGATTTTCCTATACTA | 57.899 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2466 | 2871 | 9.937876 | CCTATACTATTCCTATCCTATGAACCA | 57.062 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
2470 | 2875 | 7.978925 | ACTATTCCTATCCTATGAACCAAAGG | 58.021 | 38.462 | 0.00 | 0.00 | 0.00 | 3.11 |
2471 | 2876 | 7.794683 | ACTATTCCTATCCTATGAACCAAAGGA | 59.205 | 37.037 | 0.00 | 0.00 | 43.38 | 3.36 |
2472 | 2877 | 6.500589 | TTCCTATCCTATGAACCAAAGGAG | 57.499 | 41.667 | 0.00 | 0.00 | 42.53 | 3.69 |
2473 | 2878 | 4.907875 | TCCTATCCTATGAACCAAAGGAGG | 59.092 | 45.833 | 0.00 | 0.00 | 42.53 | 4.30 |
2510 | 2915 | 2.154963 | CGTTGACTGTGGTATGAACACG | 59.845 | 50.000 | 0.00 | 0.00 | 41.64 | 4.49 |
2550 | 2955 | 7.014230 | TGTTGCTATGCTGTAGACTATGTATGA | 59.986 | 37.037 | 1.55 | 0.00 | 0.00 | 2.15 |
2552 | 2957 | 8.127150 | TGCTATGCTGTAGACTATGTATGATT | 57.873 | 34.615 | 1.55 | 0.00 | 0.00 | 2.57 |
2614 | 3019 | 7.175119 | TGGTCAAATTCCAACAATCGTATGTTA | 59.825 | 33.333 | 7.96 | 0.00 | 41.44 | 2.41 |
2621 | 3026 | 6.635755 | TCCAACAATCGTATGTTACTCATCA | 58.364 | 36.000 | 7.96 | 0.00 | 41.44 | 3.07 |
2703 | 3109 | 3.003275 | TCCGATTTGTGTTGAAAGCTGAC | 59.997 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2714 | 3120 | 1.739466 | GAAAGCTGACCGATGCATTCA | 59.261 | 47.619 | 0.00 | 0.00 | 37.02 | 2.57 |
2888 | 3294 | 8.841444 | CAAATATTCGAACTTTTGGATCGATT | 57.159 | 30.769 | 19.56 | 0.00 | 44.14 | 3.34 |
2979 | 3385 | 8.263640 | ACCCTGAATATGCATTATCATCTACTC | 58.736 | 37.037 | 3.54 | 0.00 | 0.00 | 2.59 |
2998 | 3404 | 4.351127 | ACTCCCTCCGTCCCATAATATAC | 58.649 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
2999 | 3405 | 3.359033 | TCCCTCCGTCCCATAATATACG | 58.641 | 50.000 | 0.00 | 0.00 | 35.20 | 3.06 |
3013 | 3419 | 7.307751 | CCCATAATATACGAGCGTTTTTGACAT | 60.308 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
3038 | 3444 | 2.613223 | GGAGGGAGTACAACTCAAGTGC | 60.613 | 54.545 | 9.15 | 0.00 | 46.79 | 4.40 |
3306 | 3713 | 5.459107 | GCGAACCACTACTATGTATTGTCTG | 59.541 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3674 | 4082 | 6.127952 | ACGTGTAAGAGCTCTTCTTTACTAGG | 60.128 | 42.308 | 31.67 | 19.27 | 43.68 | 3.02 |
4034 | 4444 | 0.176680 | AGCGTCTCTGATGGCGATTT | 59.823 | 50.000 | 5.53 | 0.00 | 0.00 | 2.17 |
4035 | 4445 | 1.009829 | GCGTCTCTGATGGCGATTTT | 58.990 | 50.000 | 5.53 | 0.00 | 0.00 | 1.82 |
4036 | 4446 | 1.398390 | GCGTCTCTGATGGCGATTTTT | 59.602 | 47.619 | 5.53 | 0.00 | 0.00 | 1.94 |
4143 | 4553 | 2.401583 | TTCCATCGGTCATCTGGTTG | 57.598 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4259 | 4669 | 9.745880 | AACGAAAGAGAATAACATATCGTGTAT | 57.254 | 29.630 | 0.00 | 0.00 | 41.14 | 2.29 |
4344 | 4755 | 8.404000 | CAGAAAATCTGTGATAAGCTAAATGCT | 58.596 | 33.333 | 0.00 | 0.00 | 45.90 | 3.79 |
4376 | 4787 | 3.750130 | GCGTTGATCATCAAGCTATCCAT | 59.250 | 43.478 | 0.00 | 0.00 | 37.00 | 3.41 |
4423 | 4834 | 7.589395 | CATAGAGACACCTAGATGACACATAC | 58.411 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
4424 | 4835 | 4.576873 | AGAGACACCTAGATGACACATACG | 59.423 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
4425 | 4836 | 4.270834 | AGACACCTAGATGACACATACGT | 58.729 | 43.478 | 0.00 | 0.00 | 0.00 | 3.57 |
4426 | 4837 | 5.434408 | AGACACCTAGATGACACATACGTA | 58.566 | 41.667 | 0.00 | 0.00 | 0.00 | 3.57 |
4449 | 4860 | 4.718961 | AGAGCAAGTACAACAGGAATTGT | 58.281 | 39.130 | 0.00 | 0.00 | 44.87 | 2.71 |
4471 | 4882 | 5.594725 | TGTACCTAGGAAGACTGATCATCAC | 59.405 | 44.000 | 17.98 | 0.00 | 0.00 | 3.06 |
4644 | 5056 | 4.890581 | AGTGGAGTCTGTCTATACCACATC | 59.109 | 45.833 | 14.87 | 0.00 | 46.67 | 3.06 |
4647 | 5059 | 6.205853 | GTGGAGTCTGTCTATACCACATCTAG | 59.794 | 46.154 | 0.00 | 0.00 | 44.58 | 2.43 |
4650 | 5062 | 7.120579 | GGAGTCTGTCTATACCACATCTAGATG | 59.879 | 44.444 | 27.63 | 27.63 | 44.15 | 2.90 |
4721 | 5134 | 3.825027 | CGTTGCTAACTACGTTCGC | 57.175 | 52.632 | 0.00 | 0.00 | 39.67 | 4.70 |
4753 | 5166 | 1.959226 | TGTCGCTTCCTTTGCCGTC | 60.959 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
4784 | 5197 | 0.257328 | TGTTTGTCCAGCCCAGAACA | 59.743 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4785 | 5198 | 0.954452 | GTTTGTCCAGCCCAGAACAG | 59.046 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4786 | 5199 | 0.843309 | TTTGTCCAGCCCAGAACAGA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4787 | 5200 | 0.843309 | TTGTCCAGCCCAGAACAGAA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4789 | 5202 | 0.951040 | GTCCAGCCCAGAACAGAACG | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4790 | 5203 | 1.118965 | TCCAGCCCAGAACAGAACGA | 61.119 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4792 | 5205 | 1.006102 | AGCCCAGAACAGAACGACG | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 5.12 |
4793 | 5206 | 2.668280 | GCCCAGAACAGAACGACGC | 61.668 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
4794 | 5207 | 1.006102 | CCCAGAACAGAACGACGCT | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 5.07 |
4797 | 6575 | 1.664965 | AGAACAGAACGACGCTGCC | 60.665 | 57.895 | 0.00 | 0.00 | 36.86 | 4.85 |
4817 | 6595 | 4.974438 | ACCCAGCCCCGTTCCAGA | 62.974 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4818 | 6596 | 3.411517 | CCCAGCCCCGTTCCAGAT | 61.412 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
4847 | 7810 | 2.880268 | CAGTCCTTGTCATTGTTGCTGA | 59.120 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
4871 | 7834 | 1.975660 | TGTAACTGTTGTTGGGCCTC | 58.024 | 50.000 | 4.53 | 0.00 | 37.59 | 4.70 |
4872 | 7835 | 1.244816 | GTAACTGTTGTTGGGCCTCC | 58.755 | 55.000 | 4.53 | 0.00 | 37.59 | 4.30 |
4889 | 7852 | 5.451354 | GGCCTCCAGGGTTATATTTGTTTA | 58.549 | 41.667 | 0.00 | 0.00 | 37.43 | 2.01 |
4890 | 7853 | 5.535030 | GGCCTCCAGGGTTATATTTGTTTAG | 59.465 | 44.000 | 0.00 | 0.00 | 37.43 | 1.85 |
4894 | 7857 | 9.031537 | CCTCCAGGGTTATATTTGTTTAGTTTT | 57.968 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4948 | 7911 | 4.508052 | GCATCACAAAGAAAAAGTTTGCG | 58.492 | 39.130 | 0.00 | 0.00 | 38.27 | 4.85 |
4968 | 7931 | 4.688879 | TGCGTGTATCCTTTTCTAGTTGTG | 59.311 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
75 | 76 | 4.564041 | TGCAAATTATGGTGTCGCAAATT | 58.436 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
81 | 82 | 4.154015 | TCAGAGTTGCAAATTATGGTGTCG | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
90 | 91 | 6.889301 | TCAAGATCTTCAGAGTTGCAAATT | 57.111 | 33.333 | 4.57 | 0.00 | 0.00 | 1.82 |
91 | 92 | 6.263842 | TGTTCAAGATCTTCAGAGTTGCAAAT | 59.736 | 34.615 | 4.57 | 0.00 | 0.00 | 2.32 |
95 | 96 | 5.629097 | CATGTTCAAGATCTTCAGAGTTGC | 58.371 | 41.667 | 4.57 | 0.00 | 0.00 | 4.17 |
158 | 160 | 4.551702 | AAAAGTTTCTGGCAAAACAGGT | 57.448 | 36.364 | 19.83 | 8.22 | 40.77 | 4.00 |
283 | 310 | 3.703492 | AGGGGGCATTCTATTCCCT | 57.297 | 52.632 | 0.00 | 0.00 | 42.74 | 4.20 |
303 | 330 | 5.602561 | TCACAGCCTTACATGGTATATCTGT | 59.397 | 40.000 | 0.00 | 0.46 | 33.13 | 3.41 |
314 | 349 | 2.816087 | CTGCAAAGTCACAGCCTTACAT | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
381 | 417 | 5.870978 | AGTAACAAACGACACAACACTTACT | 59.129 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
399 | 435 | 5.391523 | GCAACGAGGCATGATAAAAGTAACA | 60.392 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
425 | 786 | 2.104451 | CAGGTCATCATGAAGCTAGGCT | 59.896 | 50.000 | 0.00 | 0.00 | 42.56 | 4.58 |
426 | 787 | 2.492012 | CAGGTCATCATGAAGCTAGGC | 58.508 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
427 | 788 | 2.437281 | ACCAGGTCATCATGAAGCTAGG | 59.563 | 50.000 | 0.00 | 6.53 | 0.00 | 3.02 |
428 | 789 | 3.387374 | AGACCAGGTCATCATGAAGCTAG | 59.613 | 47.826 | 22.31 | 0.00 | 34.60 | 3.42 |
429 | 790 | 3.378512 | AGACCAGGTCATCATGAAGCTA | 58.621 | 45.455 | 22.31 | 0.00 | 34.60 | 3.32 |
430 | 791 | 2.170187 | GAGACCAGGTCATCATGAAGCT | 59.830 | 50.000 | 22.31 | 0.00 | 34.60 | 3.74 |
431 | 792 | 2.093288 | TGAGACCAGGTCATCATGAAGC | 60.093 | 50.000 | 22.31 | 0.00 | 34.60 | 3.86 |
432 | 793 | 3.900966 | TGAGACCAGGTCATCATGAAG | 57.099 | 47.619 | 22.31 | 0.00 | 34.60 | 3.02 |
433 | 794 | 4.639078 | TTTGAGACCAGGTCATCATGAA | 57.361 | 40.909 | 22.31 | 10.97 | 34.60 | 2.57 |
434 | 795 | 4.019051 | ACATTTGAGACCAGGTCATCATGA | 60.019 | 41.667 | 22.31 | 12.96 | 34.60 | 3.07 |
435 | 796 | 4.267536 | ACATTTGAGACCAGGTCATCATG | 58.732 | 43.478 | 22.31 | 17.88 | 34.60 | 3.07 |
436 | 797 | 4.581309 | ACATTTGAGACCAGGTCATCAT | 57.419 | 40.909 | 22.31 | 0.00 | 34.60 | 2.45 |
437 | 798 | 4.371624 | AACATTTGAGACCAGGTCATCA | 57.628 | 40.909 | 22.31 | 17.73 | 34.60 | 3.07 |
438 | 799 | 4.636206 | GGTAACATTTGAGACCAGGTCATC | 59.364 | 45.833 | 22.31 | 15.51 | 34.60 | 2.92 |
439 | 800 | 4.042809 | TGGTAACATTTGAGACCAGGTCAT | 59.957 | 41.667 | 22.31 | 6.81 | 46.17 | 3.06 |
440 | 801 | 3.392947 | TGGTAACATTTGAGACCAGGTCA | 59.607 | 43.478 | 22.31 | 0.55 | 46.17 | 4.02 |
441 | 802 | 4.015872 | TGGTAACATTTGAGACCAGGTC | 57.984 | 45.455 | 12.25 | 12.25 | 46.17 | 3.85 |
458 | 819 | 2.054799 | ACAGCAGTTTTCCCTCTGGTA | 58.945 | 47.619 | 0.00 | 0.00 | 39.82 | 3.25 |
507 | 868 | 9.877178 | TCCTTCAGATTACAGTAATTCTTCTTC | 57.123 | 33.333 | 7.26 | 0.00 | 0.00 | 2.87 |
588 | 956 | 6.364701 | TCGATGTATTCCTGGGAAATTTCAT | 58.635 | 36.000 | 19.49 | 6.16 | 37.69 | 2.57 |
593 | 961 | 4.655963 | CCATCGATGTATTCCTGGGAAAT | 58.344 | 43.478 | 23.27 | 0.00 | 37.69 | 2.17 |
661 | 1034 | 1.765657 | TTGCAGGCCTGGGCTTTTT | 60.766 | 52.632 | 33.46 | 0.00 | 41.60 | 1.94 |
821 | 1208 | 1.954382 | GTGTTGTTGTTCTTCTCCCCC | 59.046 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
833 | 1220 | 2.618053 | GGACTATCGGAGGTGTTGTTG | 58.382 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
838 | 1225 | 1.143277 | AGATCGGACTATCGGAGGTGT | 59.857 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
840 | 1227 | 1.420514 | TGAGATCGGACTATCGGAGGT | 59.579 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
841 | 1228 | 1.807742 | GTGAGATCGGACTATCGGAGG | 59.192 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
842 | 1229 | 2.224549 | GTGTGAGATCGGACTATCGGAG | 59.775 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
843 | 1230 | 2.219458 | GTGTGAGATCGGACTATCGGA | 58.781 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
844 | 1231 | 1.267261 | GGTGTGAGATCGGACTATCGG | 59.733 | 57.143 | 0.00 | 0.00 | 0.00 | 4.18 |
845 | 1232 | 1.267261 | GGGTGTGAGATCGGACTATCG | 59.733 | 57.143 | 0.00 | 0.00 | 0.00 | 2.92 |
846 | 1233 | 2.034812 | GTGGGTGTGAGATCGGACTATC | 59.965 | 54.545 | 0.00 | 0.00 | 0.00 | 2.08 |
847 | 1234 | 2.032620 | GTGGGTGTGAGATCGGACTAT | 58.967 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
848 | 1235 | 1.471119 | GTGGGTGTGAGATCGGACTA | 58.529 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
849 | 1236 | 1.258445 | GGTGGGTGTGAGATCGGACT | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
850 | 1237 | 1.218316 | GGTGGGTGTGAGATCGGAC | 59.782 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1047 | 1438 | 4.017808 | CGACCGGAGATTATCTTAGGGAT | 58.982 | 47.826 | 9.46 | 2.31 | 38.38 | 3.85 |
1051 | 1442 | 3.253677 | ACAGCGACCGGAGATTATCTTAG | 59.746 | 47.826 | 9.46 | 0.00 | 0.00 | 2.18 |
1070 | 1461 | 3.817084 | TCTGTTGAAGATGGCAAGAACAG | 59.183 | 43.478 | 15.57 | 15.57 | 40.97 | 3.16 |
1177 | 1576 | 5.819901 | ACCAGTACTACGAACTATAGTCCAC | 59.180 | 44.000 | 5.70 | 0.64 | 34.66 | 4.02 |
1178 | 1577 | 5.994250 | ACCAGTACTACGAACTATAGTCCA | 58.006 | 41.667 | 5.70 | 0.00 | 34.66 | 4.02 |
1179 | 1578 | 6.934048 | AACCAGTACTACGAACTATAGTCC | 57.066 | 41.667 | 5.70 | 0.00 | 34.66 | 3.85 |
1559 | 1958 | 8.417273 | AATTTAACTACCAACCAAATAGCACT | 57.583 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
1562 | 1961 | 7.547722 | CCCAAATTTAACTACCAACCAAATAGC | 59.452 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
1565 | 1964 | 6.234920 | GCCCAAATTTAACTACCAACCAAAT | 58.765 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1586 | 1985 | 0.375803 | CGCCAAACATAAGTACGCCC | 59.624 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1595 | 1994 | 1.380403 | CCAATCGCCCGCCAAACATA | 61.380 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1598 | 1997 | 3.336715 | GACCAATCGCCCGCCAAAC | 62.337 | 63.158 | 0.00 | 0.00 | 0.00 | 2.93 |
1600 | 1999 | 3.851897 | TTGACCAATCGCCCGCCAA | 62.852 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
1628 | 2027 | 2.093288 | ACATGGATGAGCAACAGACGAT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
1631 | 2030 | 2.161012 | CACACATGGATGAGCAACAGAC | 59.839 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1657 | 2058 | 0.110486 | ACAGGGGTGTTGCCTTACAG | 59.890 | 55.000 | 0.00 | 0.00 | 37.43 | 2.74 |
1679 | 2080 | 6.819397 | AATTTAGGTAAGCAAGGTGAAGAC | 57.181 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1687 | 2088 | 6.599638 | AGCTTGGACTAATTTAGGTAAGCAAG | 59.400 | 38.462 | 25.88 | 0.00 | 39.91 | 4.01 |
1691 | 2092 | 7.169982 | CGATCAGCTTGGACTAATTTAGGTAAG | 59.830 | 40.741 | 8.26 | 9.33 | 0.00 | 2.34 |
1723 | 2124 | 4.442893 | CGATTAGGCAATAGACACCAGGAA | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1724 | 2125 | 3.069586 | CGATTAGGCAATAGACACCAGGA | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1725 | 2126 | 3.069586 | TCGATTAGGCAATAGACACCAGG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
1726 | 2127 | 4.322080 | TCGATTAGGCAATAGACACCAG | 57.678 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1727 | 2128 | 4.955811 | ATCGATTAGGCAATAGACACCA | 57.044 | 40.909 | 0.00 | 0.00 | 29.90 | 4.17 |
1728 | 2129 | 5.560953 | GCAAATCGATTAGGCAATAGACACC | 60.561 | 44.000 | 22.64 | 0.00 | 29.90 | 4.16 |
1729 | 2130 | 5.237344 | AGCAAATCGATTAGGCAATAGACAC | 59.763 | 40.000 | 26.73 | 4.62 | 29.90 | 3.67 |
1730 | 2131 | 5.368145 | AGCAAATCGATTAGGCAATAGACA | 58.632 | 37.500 | 26.73 | 0.00 | 29.90 | 3.41 |
1731 | 2132 | 5.931441 | AGCAAATCGATTAGGCAATAGAC | 57.069 | 39.130 | 26.73 | 5.70 | 29.90 | 2.59 |
1762 | 2163 | 9.245962 | CCTGTAAGTAGATAATAACTTCAACCG | 57.754 | 37.037 | 0.00 | 0.00 | 37.19 | 4.44 |
1788 | 2192 | 5.049336 | GCAGAGTTTTCCAGAAACCTACTTC | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1837 | 2241 | 1.660607 | CATAGTACGTGGCACTTGCAG | 59.339 | 52.381 | 16.72 | 1.71 | 44.36 | 4.41 |
1880 | 2285 | 1.564348 | TCCTATGAACCAAAGGAGGCC | 59.436 | 52.381 | 0.00 | 0.00 | 34.46 | 5.19 |
1881 | 2286 | 3.366052 | TTCCTATGAACCAAAGGAGGC | 57.634 | 47.619 | 0.00 | 0.00 | 40.43 | 4.70 |
1882 | 2287 | 7.062957 | ACAATATTCCTATGAACCAAAGGAGG | 58.937 | 38.462 | 0.00 | 0.00 | 40.43 | 4.30 |
1883 | 2288 | 9.277783 | CTACAATATTCCTATGAACCAAAGGAG | 57.722 | 37.037 | 0.00 | 0.00 | 40.43 | 3.69 |
1884 | 2289 | 8.217799 | CCTACAATATTCCTATGAACCAAAGGA | 58.782 | 37.037 | 0.00 | 0.00 | 37.64 | 3.36 |
1885 | 2290 | 8.217799 | TCCTACAATATTCCTATGAACCAAAGG | 58.782 | 37.037 | 0.00 | 0.00 | 32.13 | 3.11 |
1886 | 2291 | 9.627123 | TTCCTACAATATTCCTATGAACCAAAG | 57.373 | 33.333 | 0.00 | 0.00 | 32.13 | 2.77 |
1917 | 2322 | 9.601810 | ATTTTTCCTACAAAGTTCCTATCCTTT | 57.398 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
1918 | 2323 | 9.601810 | AATTTTTCCTACAAAGTTCCTATCCTT | 57.398 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
1929 | 2334 | 8.978539 | GCCTTCAAAGTAATTTTTCCTACAAAG | 58.021 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
1930 | 2335 | 7.929245 | GGCCTTCAAAGTAATTTTTCCTACAAA | 59.071 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1931 | 2336 | 7.289084 | AGGCCTTCAAAGTAATTTTTCCTACAA | 59.711 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
1932 | 2337 | 6.780522 | AGGCCTTCAAAGTAATTTTTCCTACA | 59.219 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1933 | 2338 | 7.176865 | AGAGGCCTTCAAAGTAATTTTTCCTAC | 59.823 | 37.037 | 6.77 | 0.00 | 0.00 | 3.18 |
1934 | 2339 | 7.238710 | AGAGGCCTTCAAAGTAATTTTTCCTA | 58.761 | 34.615 | 6.77 | 0.00 | 0.00 | 2.94 |
1935 | 2340 | 6.077993 | AGAGGCCTTCAAAGTAATTTTTCCT | 58.922 | 36.000 | 6.77 | 0.00 | 0.00 | 3.36 |
1936 | 2341 | 6.346477 | AGAGGCCTTCAAAGTAATTTTTCC | 57.654 | 37.500 | 6.77 | 0.00 | 0.00 | 3.13 |
1937 | 2342 | 8.551205 | CAAAAGAGGCCTTCAAAGTAATTTTTC | 58.449 | 33.333 | 6.77 | 0.00 | 0.00 | 2.29 |
1938 | 2343 | 7.498900 | CCAAAAGAGGCCTTCAAAGTAATTTTT | 59.501 | 33.333 | 6.77 | 0.00 | 0.00 | 1.94 |
1939 | 2344 | 6.992123 | CCAAAAGAGGCCTTCAAAGTAATTTT | 59.008 | 34.615 | 6.77 | 1.20 | 0.00 | 1.82 |
1940 | 2345 | 6.099701 | ACCAAAAGAGGCCTTCAAAGTAATTT | 59.900 | 34.615 | 6.77 | 0.00 | 0.00 | 1.82 |
1941 | 2346 | 5.602561 | ACCAAAAGAGGCCTTCAAAGTAATT | 59.397 | 36.000 | 6.77 | 0.00 | 0.00 | 1.40 |
1942 | 2347 | 5.147767 | ACCAAAAGAGGCCTTCAAAGTAAT | 58.852 | 37.500 | 6.77 | 0.00 | 0.00 | 1.89 |
1943 | 2348 | 4.542697 | ACCAAAAGAGGCCTTCAAAGTAA | 58.457 | 39.130 | 6.77 | 0.00 | 0.00 | 2.24 |
1944 | 2349 | 4.178956 | ACCAAAAGAGGCCTTCAAAGTA | 57.821 | 40.909 | 6.77 | 0.00 | 0.00 | 2.24 |
1945 | 2350 | 3.032265 | ACCAAAAGAGGCCTTCAAAGT | 57.968 | 42.857 | 6.77 | 0.00 | 0.00 | 2.66 |
1946 | 2351 | 3.384467 | TGAACCAAAAGAGGCCTTCAAAG | 59.616 | 43.478 | 6.77 | 0.00 | 0.00 | 2.77 |
1947 | 2352 | 3.370104 | TGAACCAAAAGAGGCCTTCAAA | 58.630 | 40.909 | 6.77 | 0.00 | 0.00 | 2.69 |
1948 | 2353 | 3.025322 | TGAACCAAAAGAGGCCTTCAA | 57.975 | 42.857 | 6.77 | 0.00 | 0.00 | 2.69 |
1949 | 2354 | 2.746279 | TGAACCAAAAGAGGCCTTCA | 57.254 | 45.000 | 6.77 | 0.00 | 0.00 | 3.02 |
1950 | 2355 | 3.696548 | CCTATGAACCAAAAGAGGCCTTC | 59.303 | 47.826 | 6.77 | 0.00 | 0.00 | 3.46 |
1951 | 2356 | 3.333680 | TCCTATGAACCAAAAGAGGCCTT | 59.666 | 43.478 | 6.77 | 0.00 | 0.00 | 4.35 |
1952 | 2357 | 2.919602 | TCCTATGAACCAAAAGAGGCCT | 59.080 | 45.455 | 3.86 | 3.86 | 0.00 | 5.19 |
1953 | 2358 | 3.366052 | TCCTATGAACCAAAAGAGGCC | 57.634 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
1954 | 2359 | 5.066593 | CCTATCCTATGAACCAAAAGAGGC | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
1955 | 2360 | 6.500589 | TCCTATCCTATGAACCAAAAGAGG | 57.499 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1958 | 2363 | 9.155975 | CGATAATCCTATCCTATGAACCAAAAG | 57.844 | 37.037 | 0.00 | 0.00 | 31.68 | 2.27 |
1959 | 2364 | 8.656806 | ACGATAATCCTATCCTATGAACCAAAA | 58.343 | 33.333 | 0.00 | 0.00 | 31.68 | 2.44 |
1960 | 2365 | 8.202461 | ACGATAATCCTATCCTATGAACCAAA | 57.798 | 34.615 | 0.00 | 0.00 | 31.68 | 3.28 |
1961 | 2366 | 7.792364 | ACGATAATCCTATCCTATGAACCAA | 57.208 | 36.000 | 0.00 | 0.00 | 31.68 | 3.67 |
1962 | 2367 | 7.560262 | CCTACGATAATCCTATCCTATGAACCA | 59.440 | 40.741 | 0.00 | 0.00 | 31.68 | 3.67 |
1963 | 2368 | 7.778853 | TCCTACGATAATCCTATCCTATGAACC | 59.221 | 40.741 | 0.00 | 0.00 | 31.68 | 3.62 |
1964 | 2369 | 8.749026 | TCCTACGATAATCCTATCCTATGAAC | 57.251 | 38.462 | 0.00 | 0.00 | 31.68 | 3.18 |
1965 | 2370 | 9.937876 | ATTCCTACGATAATCCTATCCTATGAA | 57.062 | 33.333 | 0.00 | 0.00 | 31.68 | 2.57 |
1969 | 2374 | 9.234086 | TCCTATTCCTACGATAATCCTATCCTA | 57.766 | 37.037 | 0.00 | 0.00 | 31.68 | 2.94 |
1970 | 2375 | 8.115490 | TCCTATTCCTACGATAATCCTATCCT | 57.885 | 38.462 | 0.00 | 0.00 | 31.68 | 3.24 |
1971 | 2376 | 8.763984 | TTCCTATTCCTACGATAATCCTATCC | 57.236 | 38.462 | 0.00 | 0.00 | 31.68 | 2.59 |
1973 | 2378 | 9.369672 | GGATTCCTATTCCTACGATAATCCTAT | 57.630 | 37.037 | 0.00 | 0.00 | 38.59 | 2.57 |
1974 | 2379 | 8.566979 | AGGATTCCTATTCCTACGATAATCCTA | 58.433 | 37.037 | 2.49 | 0.00 | 45.94 | 2.94 |
1975 | 2380 | 7.423341 | AGGATTCCTATTCCTACGATAATCCT | 58.577 | 38.462 | 2.49 | 7.32 | 44.07 | 3.24 |
1976 | 2381 | 7.124448 | ACAGGATTCCTATTCCTACGATAATCC | 59.876 | 40.741 | 4.51 | 0.00 | 41.78 | 3.01 |
1977 | 2382 | 8.068892 | ACAGGATTCCTATTCCTACGATAATC | 57.931 | 38.462 | 4.51 | 0.00 | 41.78 | 1.75 |
1978 | 2383 | 9.191479 | CTACAGGATTCCTATTCCTACGATAAT | 57.809 | 37.037 | 4.51 | 0.00 | 41.78 | 1.28 |
1979 | 2384 | 7.614583 | CCTACAGGATTCCTATTCCTACGATAA | 59.385 | 40.741 | 4.51 | 0.00 | 41.78 | 1.75 |
1980 | 2385 | 7.037080 | TCCTACAGGATTCCTATTCCTACGATA | 60.037 | 40.741 | 4.51 | 0.00 | 41.78 | 2.92 |
1981 | 2386 | 5.952947 | CCTACAGGATTCCTATTCCTACGAT | 59.047 | 44.000 | 4.51 | 0.00 | 41.78 | 3.73 |
1982 | 2387 | 5.074102 | TCCTACAGGATTCCTATTCCTACGA | 59.926 | 44.000 | 4.51 | 0.00 | 41.78 | 3.43 |
1983 | 2388 | 5.322754 | TCCTACAGGATTCCTATTCCTACG | 58.677 | 45.833 | 4.51 | 0.00 | 41.78 | 3.51 |
1984 | 2389 | 7.613551 | TTTCCTACAGGATTCCTATTCCTAC | 57.386 | 40.000 | 4.51 | 0.00 | 44.98 | 3.18 |
1985 | 2390 | 8.016652 | TCATTTCCTACAGGATTCCTATTCCTA | 58.983 | 37.037 | 4.51 | 0.00 | 44.98 | 2.94 |
1986 | 2391 | 6.851836 | TCATTTCCTACAGGATTCCTATTCCT | 59.148 | 38.462 | 4.51 | 0.00 | 44.98 | 3.36 |
1987 | 2392 | 7.016661 | TCTCATTTCCTACAGGATTCCTATTCC | 59.983 | 40.741 | 4.51 | 0.00 | 44.98 | 3.01 |
1988 | 2393 | 7.967908 | TCTCATTTCCTACAGGATTCCTATTC | 58.032 | 38.462 | 4.51 | 0.00 | 44.98 | 1.75 |
1989 | 2394 | 7.937700 | TCTCATTTCCTACAGGATTCCTATT | 57.062 | 36.000 | 4.51 | 0.00 | 44.98 | 1.73 |
1990 | 2395 | 7.736691 | TCATCTCATTTCCTACAGGATTCCTAT | 59.263 | 37.037 | 4.51 | 0.00 | 44.98 | 2.57 |
1991 | 2396 | 7.015682 | GTCATCTCATTTCCTACAGGATTCCTA | 59.984 | 40.741 | 4.51 | 0.00 | 44.98 | 2.94 |
1992 | 2397 | 5.907662 | TCATCTCATTTCCTACAGGATTCCT | 59.092 | 40.000 | 0.00 | 0.00 | 44.98 | 3.36 |
1993 | 2398 | 5.994668 | GTCATCTCATTTCCTACAGGATTCC | 59.005 | 44.000 | 0.00 | 0.00 | 44.98 | 3.01 |
1994 | 2399 | 6.586344 | TGTCATCTCATTTCCTACAGGATTC | 58.414 | 40.000 | 0.00 | 0.00 | 44.98 | 2.52 |
1995 | 2400 | 6.566079 | TGTCATCTCATTTCCTACAGGATT | 57.434 | 37.500 | 0.00 | 0.00 | 44.98 | 3.01 |
1996 | 2401 | 6.100859 | ACATGTCATCTCATTTCCTACAGGAT | 59.899 | 38.462 | 0.00 | 0.00 | 44.98 | 3.24 |
1997 | 2402 | 5.426509 | ACATGTCATCTCATTTCCTACAGGA | 59.573 | 40.000 | 0.00 | 0.00 | 43.73 | 3.86 |
1998 | 2403 | 5.678583 | ACATGTCATCTCATTTCCTACAGG | 58.321 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1999 | 2404 | 8.366401 | AGATACATGTCATCTCATTTCCTACAG | 58.634 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2000 | 2405 | 8.255111 | AGATACATGTCATCTCATTTCCTACA | 57.745 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2001 | 2406 | 8.755696 | GAGATACATGTCATCTCATTTCCTAC | 57.244 | 38.462 | 24.95 | 8.46 | 45.17 | 3.18 |
2010 | 2415 | 9.368674 | CATAGGATTTGAGATACATGTCATCTC | 57.631 | 37.037 | 24.04 | 24.04 | 45.76 | 2.75 |
2011 | 2416 | 9.097946 | TCATAGGATTTGAGATACATGTCATCT | 57.902 | 33.333 | 0.00 | 9.42 | 35.43 | 2.90 |
2012 | 2417 | 9.368674 | CTCATAGGATTTGAGATACATGTCATC | 57.631 | 37.037 | 0.00 | 4.47 | 42.63 | 2.92 |
2013 | 2418 | 8.878211 | ACTCATAGGATTTGAGATACATGTCAT | 58.122 | 33.333 | 0.00 | 0.00 | 42.63 | 3.06 |
2014 | 2419 | 8.255111 | ACTCATAGGATTTGAGATACATGTCA | 57.745 | 34.615 | 0.00 | 0.00 | 42.63 | 3.58 |
2015 | 2420 | 9.853555 | CTACTCATAGGATTTGAGATACATGTC | 57.146 | 37.037 | 0.00 | 0.00 | 42.63 | 3.06 |
2032 | 2437 | 7.747155 | TCTCGTTTCCTATTCCTACTCATAG | 57.253 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2033 | 2438 | 7.724506 | ACATCTCGTTTCCTATTCCTACTCATA | 59.275 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
2034 | 2439 | 6.551601 | ACATCTCGTTTCCTATTCCTACTCAT | 59.448 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2035 | 2440 | 5.892119 | ACATCTCGTTTCCTATTCCTACTCA | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2036 | 2441 | 6.039493 | TGACATCTCGTTTCCTATTCCTACTC | 59.961 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2037 | 2442 | 5.892119 | TGACATCTCGTTTCCTATTCCTACT | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2038 | 2443 | 6.145338 | TGACATCTCGTTTCCTATTCCTAC | 57.855 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2039 | 2444 | 6.978674 | ATGACATCTCGTTTCCTATTCCTA | 57.021 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
2040 | 2445 | 5.878406 | ATGACATCTCGTTTCCTATTCCT | 57.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2041 | 2446 | 6.238484 | CCAAATGACATCTCGTTTCCTATTCC | 60.238 | 42.308 | 0.00 | 0.00 | 33.97 | 3.01 |
2042 | 2447 | 6.316390 | ACCAAATGACATCTCGTTTCCTATTC | 59.684 | 38.462 | 0.00 | 0.00 | 33.97 | 1.75 |
2043 | 2448 | 6.180472 | ACCAAATGACATCTCGTTTCCTATT | 58.820 | 36.000 | 0.00 | 0.00 | 33.97 | 1.73 |
2044 | 2449 | 5.745227 | ACCAAATGACATCTCGTTTCCTAT | 58.255 | 37.500 | 0.00 | 0.00 | 33.97 | 2.57 |
2045 | 2450 | 5.160607 | ACCAAATGACATCTCGTTTCCTA | 57.839 | 39.130 | 0.00 | 0.00 | 33.97 | 2.94 |
2046 | 2451 | 4.021102 | ACCAAATGACATCTCGTTTCCT | 57.979 | 40.909 | 0.00 | 0.00 | 33.97 | 3.36 |
2047 | 2452 | 4.215399 | TCAACCAAATGACATCTCGTTTCC | 59.785 | 41.667 | 0.00 | 0.00 | 33.97 | 3.13 |
2048 | 2453 | 5.356882 | TCAACCAAATGACATCTCGTTTC | 57.643 | 39.130 | 0.00 | 0.00 | 33.97 | 2.78 |
2065 | 2470 | 4.814234 | GGAAAAATTCCTTTGGTGTCAACC | 59.186 | 41.667 | 1.86 | 0.00 | 46.57 | 3.77 |
2066 | 2471 | 5.984233 | GGAAAAATTCCTTTGGTGTCAAC | 57.016 | 39.130 | 1.86 | 0.00 | 46.57 | 3.18 |
2077 | 2482 | 8.285329 | GAGCCTAGACTCAATGGAAAAATTCCT | 61.285 | 40.741 | 10.28 | 0.00 | 42.21 | 3.36 |
2078 | 2483 | 6.183360 | GAGCCTAGACTCAATGGAAAAATTCC | 60.183 | 42.308 | 0.51 | 2.12 | 42.14 | 3.01 |
2079 | 2484 | 6.375455 | TGAGCCTAGACTCAATGGAAAAATTC | 59.625 | 38.462 | 6.25 | 0.00 | 43.59 | 2.17 |
2080 | 2485 | 6.248433 | TGAGCCTAGACTCAATGGAAAAATT | 58.752 | 36.000 | 6.25 | 0.00 | 43.59 | 1.82 |
2081 | 2486 | 5.819991 | TGAGCCTAGACTCAATGGAAAAAT | 58.180 | 37.500 | 6.25 | 0.00 | 43.59 | 1.82 |
2082 | 2487 | 5.241403 | TGAGCCTAGACTCAATGGAAAAA | 57.759 | 39.130 | 6.25 | 0.00 | 43.59 | 1.94 |
2083 | 2488 | 4.908601 | TGAGCCTAGACTCAATGGAAAA | 57.091 | 40.909 | 6.25 | 0.00 | 43.59 | 2.29 |
2092 | 2497 | 8.512966 | AGGAAAATAAAAATGAGCCTAGACTC | 57.487 | 34.615 | 0.00 | 0.00 | 37.19 | 3.36 |
2111 | 2516 | 9.973661 | TTCCTATCTTCACATTTCATAGGAAAA | 57.026 | 29.630 | 13.84 | 0.00 | 46.35 | 2.29 |
2113 | 2518 | 7.993183 | GGTTCCTATCTTCACATTTCATAGGAA | 59.007 | 37.037 | 12.66 | 12.66 | 46.81 | 3.36 |
2114 | 2519 | 7.127186 | TGGTTCCTATCTTCACATTTCATAGGA | 59.873 | 37.037 | 2.44 | 2.44 | 42.19 | 2.94 |
2115 | 2520 | 7.282585 | TGGTTCCTATCTTCACATTTCATAGG | 58.717 | 38.462 | 0.00 | 0.00 | 38.22 | 2.57 |
2116 | 2521 | 8.737168 | TTGGTTCCTATCTTCACATTTCATAG | 57.263 | 34.615 | 0.00 | 0.00 | 0.00 | 2.23 |
2117 | 2522 | 9.342308 | GATTGGTTCCTATCTTCACATTTCATA | 57.658 | 33.333 | 6.14 | 0.00 | 0.00 | 2.15 |
2118 | 2523 | 7.286316 | GGATTGGTTCCTATCTTCACATTTCAT | 59.714 | 37.037 | 11.60 | 0.00 | 41.78 | 2.57 |
2119 | 2524 | 6.603201 | GGATTGGTTCCTATCTTCACATTTCA | 59.397 | 38.462 | 11.60 | 0.00 | 41.78 | 2.69 |
2120 | 2525 | 7.032377 | GGATTGGTTCCTATCTTCACATTTC | 57.968 | 40.000 | 11.60 | 0.00 | 41.78 | 2.17 |
2158 | 2563 | 5.302823 | CCCTTTGGTTCATAGGAATGGATTC | 59.697 | 44.000 | 6.07 | 0.00 | 35.14 | 2.52 |
2159 | 2564 | 5.211201 | CCCTTTGGTTCATAGGAATGGATT | 58.789 | 41.667 | 6.07 | 0.00 | 35.14 | 3.01 |
2160 | 2565 | 4.808042 | CCCTTTGGTTCATAGGAATGGAT | 58.192 | 43.478 | 6.07 | 0.00 | 35.14 | 3.41 |
2161 | 2566 | 3.627237 | GCCCTTTGGTTCATAGGAATGGA | 60.627 | 47.826 | 6.07 | 0.00 | 35.14 | 3.41 |
2162 | 2567 | 2.695147 | GCCCTTTGGTTCATAGGAATGG | 59.305 | 50.000 | 6.07 | 0.00 | 35.14 | 3.16 |
2163 | 2568 | 3.633986 | GAGCCCTTTGGTTCATAGGAATG | 59.366 | 47.826 | 6.07 | 0.00 | 41.28 | 2.67 |
2164 | 2569 | 3.529319 | AGAGCCCTTTGGTTCATAGGAAT | 59.471 | 43.478 | 6.07 | 0.00 | 43.89 | 3.01 |
2165 | 2570 | 2.919602 | AGAGCCCTTTGGTTCATAGGAA | 59.080 | 45.455 | 6.07 | 0.00 | 43.89 | 3.36 |
2166 | 2571 | 2.562296 | AGAGCCCTTTGGTTCATAGGA | 58.438 | 47.619 | 6.07 | 0.00 | 43.89 | 2.94 |
2167 | 2572 | 4.503714 | TTAGAGCCCTTTGGTTCATAGG | 57.496 | 45.455 | 0.00 | 0.00 | 43.89 | 2.57 |
2168 | 2573 | 4.884164 | CCTTTAGAGCCCTTTGGTTCATAG | 59.116 | 45.833 | 0.00 | 0.00 | 43.89 | 2.23 |
2169 | 2574 | 4.538490 | TCCTTTAGAGCCCTTTGGTTCATA | 59.462 | 41.667 | 0.00 | 0.00 | 43.89 | 2.15 |
2170 | 2575 | 3.333680 | TCCTTTAGAGCCCTTTGGTTCAT | 59.666 | 43.478 | 0.00 | 0.00 | 43.89 | 2.57 |
2171 | 2576 | 2.714250 | TCCTTTAGAGCCCTTTGGTTCA | 59.286 | 45.455 | 0.00 | 0.00 | 43.89 | 3.18 |
2172 | 2577 | 3.434940 | TCCTTTAGAGCCCTTTGGTTC | 57.565 | 47.619 | 0.00 | 0.00 | 41.91 | 3.62 |
2173 | 2578 | 3.895704 | TTCCTTTAGAGCCCTTTGGTT | 57.104 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2174 | 2579 | 3.895704 | TTTCCTTTAGAGCCCTTTGGT | 57.104 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2205 | 2610 | 9.713684 | CATAGGAATTCTAGAGGATAGGATTCT | 57.286 | 37.037 | 13.16 | 5.20 | 38.80 | 2.40 |
2206 | 2611 | 9.707957 | TCATAGGAATTCTAGAGGATAGGATTC | 57.292 | 37.037 | 5.23 | 7.20 | 38.32 | 2.52 |
2213 | 2618 | 9.404077 | AGGAATTTCATAGGAATTCTAGAGGAT | 57.596 | 33.333 | 5.23 | 0.00 | 31.93 | 3.24 |
2214 | 2619 | 8.805145 | AGGAATTTCATAGGAATTCTAGAGGA | 57.195 | 34.615 | 5.23 | 0.00 | 31.93 | 3.71 |
2215 | 2620 | 8.100164 | GGAGGAATTTCATAGGAATTCTAGAGG | 58.900 | 40.741 | 5.23 | 0.00 | 31.93 | 3.69 |
2216 | 2621 | 8.654997 | TGGAGGAATTTCATAGGAATTCTAGAG | 58.345 | 37.037 | 5.23 | 0.00 | 31.93 | 2.43 |
2217 | 2622 | 8.567198 | TGGAGGAATTTCATAGGAATTCTAGA | 57.433 | 34.615 | 5.23 | 0.00 | 31.93 | 2.43 |
2218 | 2623 | 9.632638 | TTTGGAGGAATTTCATAGGAATTCTAG | 57.367 | 33.333 | 5.23 | 0.00 | 31.93 | 2.43 |
2219 | 2624 | 9.408648 | GTTTGGAGGAATTTCATAGGAATTCTA | 57.591 | 33.333 | 5.23 | 0.00 | 31.93 | 2.10 |
2220 | 2625 | 7.343057 | GGTTTGGAGGAATTTCATAGGAATTCT | 59.657 | 37.037 | 5.23 | 0.00 | 31.93 | 2.40 |
2221 | 2626 | 7.124147 | TGGTTTGGAGGAATTTCATAGGAATTC | 59.876 | 37.037 | 0.00 | 0.00 | 31.93 | 2.17 |
2222 | 2627 | 6.959366 | TGGTTTGGAGGAATTTCATAGGAATT | 59.041 | 34.615 | 0.00 | 0.00 | 31.93 | 2.17 |
2223 | 2628 | 6.502138 | TGGTTTGGAGGAATTTCATAGGAAT | 58.498 | 36.000 | 0.00 | 0.00 | 31.93 | 3.01 |
2224 | 2629 | 5.898120 | TGGTTTGGAGGAATTTCATAGGAA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
2225 | 2630 | 5.528600 | TGGTTTGGAGGAATTTCATAGGA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 2.94 |
2226 | 2631 | 6.351286 | CCTTTGGTTTGGAGGAATTTCATAGG | 60.351 | 42.308 | 0.00 | 0.00 | 32.11 | 2.57 |
2227 | 2632 | 6.437162 | TCCTTTGGTTTGGAGGAATTTCATAG | 59.563 | 38.462 | 0.00 | 0.00 | 36.67 | 2.23 |
2228 | 2633 | 6.318913 | TCCTTTGGTTTGGAGGAATTTCATA | 58.681 | 36.000 | 0.00 | 0.00 | 36.67 | 2.15 |
2229 | 2634 | 5.154418 | TCCTTTGGTTTGGAGGAATTTCAT | 58.846 | 37.500 | 0.00 | 0.00 | 36.67 | 2.57 |
2230 | 2635 | 4.551671 | TCCTTTGGTTTGGAGGAATTTCA | 58.448 | 39.130 | 0.00 | 0.00 | 36.67 | 2.69 |
2231 | 2636 | 5.139435 | CTCCTTTGGTTTGGAGGAATTTC | 57.861 | 43.478 | 0.00 | 0.00 | 44.44 | 2.17 |
2238 | 2643 | 1.244019 | CGGCCTCCTTTGGTTTGGAG | 61.244 | 60.000 | 0.00 | 0.00 | 46.91 | 3.86 |
2239 | 2644 | 1.228429 | CGGCCTCCTTTGGTTTGGA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
2240 | 2645 | 0.825840 | TTCGGCCTCCTTTGGTTTGG | 60.826 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2241 | 2646 | 0.598065 | CTTCGGCCTCCTTTGGTTTG | 59.402 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2242 | 2647 | 1.179174 | GCTTCGGCCTCCTTTGGTTT | 61.179 | 55.000 | 0.00 | 0.00 | 34.32 | 3.27 |
2243 | 2648 | 1.603739 | GCTTCGGCCTCCTTTGGTT | 60.604 | 57.895 | 0.00 | 0.00 | 34.32 | 3.67 |
2244 | 2649 | 2.034221 | GCTTCGGCCTCCTTTGGT | 59.966 | 61.111 | 0.00 | 0.00 | 34.32 | 3.67 |
2254 | 2659 | 1.006220 | CAAACCAAAGGGCTTCGGC | 60.006 | 57.895 | 0.00 | 0.00 | 37.90 | 5.54 |
2255 | 2660 | 1.539827 | CTACAAACCAAAGGGCTTCGG | 59.460 | 52.381 | 0.00 | 0.00 | 37.90 | 4.30 |
2256 | 2661 | 1.539827 | CCTACAAACCAAAGGGCTTCG | 59.460 | 52.381 | 0.00 | 0.00 | 37.90 | 3.79 |
2257 | 2662 | 2.871453 | TCCTACAAACCAAAGGGCTTC | 58.129 | 47.619 | 0.00 | 0.00 | 37.90 | 3.86 |
2258 | 2663 | 3.322191 | TTCCTACAAACCAAAGGGCTT | 57.678 | 42.857 | 0.00 | 0.00 | 37.90 | 4.35 |
2259 | 2664 | 3.165071 | CATTCCTACAAACCAAAGGGCT | 58.835 | 45.455 | 0.00 | 0.00 | 37.90 | 5.19 |
2260 | 2665 | 2.233676 | CCATTCCTACAAACCAAAGGGC | 59.766 | 50.000 | 0.00 | 0.00 | 37.90 | 5.19 |
2261 | 2666 | 3.773560 | TCCATTCCTACAAACCAAAGGG | 58.226 | 45.455 | 0.00 | 0.00 | 41.29 | 3.95 |
2262 | 2667 | 5.965922 | GAATCCATTCCTACAAACCAAAGG | 58.034 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
2304 | 2709 | 6.815142 | CCTTTGAAATGTGAAGGATTGATTCC | 59.185 | 38.462 | 0.00 | 0.00 | 45.85 | 3.01 |
2305 | 2710 | 7.605449 | TCCTTTGAAATGTGAAGGATTGATTC | 58.395 | 34.615 | 0.15 | 0.00 | 42.90 | 2.52 |
2306 | 2711 | 7.543359 | TCCTTTGAAATGTGAAGGATTGATT | 57.457 | 32.000 | 0.15 | 0.00 | 42.90 | 2.57 |
2307 | 2712 | 7.543359 | TTCCTTTGAAATGTGAAGGATTGAT | 57.457 | 32.000 | 5.03 | 0.00 | 45.99 | 2.57 |
2308 | 2713 | 6.975196 | TTCCTTTGAAATGTGAAGGATTGA | 57.025 | 33.333 | 5.03 | 0.00 | 45.99 | 2.57 |
2309 | 2714 | 8.436046 | TTTTTCCTTTGAAATGTGAAGGATTG | 57.564 | 30.769 | 5.03 | 0.00 | 45.99 | 2.67 |
2331 | 2736 | 9.125026 | CCATTGAGTCTAGGCTAATGTATTTTT | 57.875 | 33.333 | 17.62 | 0.00 | 0.00 | 1.94 |
2332 | 2737 | 8.494433 | TCCATTGAGTCTAGGCTAATGTATTTT | 58.506 | 33.333 | 17.62 | 0.00 | 0.00 | 1.82 |
2333 | 2738 | 8.034313 | TCCATTGAGTCTAGGCTAATGTATTT | 57.966 | 34.615 | 17.62 | 0.00 | 0.00 | 1.40 |
2334 | 2739 | 7.618019 | TCCATTGAGTCTAGGCTAATGTATT | 57.382 | 36.000 | 17.62 | 0.00 | 0.00 | 1.89 |
2335 | 2740 | 7.618019 | TTCCATTGAGTCTAGGCTAATGTAT | 57.382 | 36.000 | 17.62 | 0.00 | 0.00 | 2.29 |
2336 | 2741 | 7.432148 | TTTCCATTGAGTCTAGGCTAATGTA | 57.568 | 36.000 | 17.62 | 6.70 | 0.00 | 2.29 |
2337 | 2742 | 5.957771 | TTCCATTGAGTCTAGGCTAATGT | 57.042 | 39.130 | 17.62 | 0.00 | 0.00 | 2.71 |
2338 | 2743 | 7.630242 | TTTTTCCATTGAGTCTAGGCTAATG | 57.370 | 36.000 | 0.00 | 8.01 | 0.00 | 1.90 |
2339 | 2744 | 8.829373 | AATTTTTCCATTGAGTCTAGGCTAAT | 57.171 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
2340 | 2745 | 8.281212 | GAATTTTTCCATTGAGTCTAGGCTAA | 57.719 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
2341 | 2746 | 7.865706 | GAATTTTTCCATTGAGTCTAGGCTA | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 3.93 |
2342 | 2747 | 6.765915 | GAATTTTTCCATTGAGTCTAGGCT | 57.234 | 37.500 | 0.00 | 0.00 | 0.00 | 4.58 |
2358 | 2763 | 9.991906 | CATTTGATGCATAGGATAGGAATTTTT | 57.008 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2359 | 2764 | 9.370930 | TCATTTGATGCATAGGATAGGAATTTT | 57.629 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2360 | 2765 | 8.800332 | GTCATTTGATGCATAGGATAGGAATTT | 58.200 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2361 | 2766 | 7.946219 | TGTCATTTGATGCATAGGATAGGAATT | 59.054 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2362 | 2767 | 7.464273 | TGTCATTTGATGCATAGGATAGGAAT | 58.536 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2363 | 2768 | 6.840527 | TGTCATTTGATGCATAGGATAGGAA | 58.159 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2364 | 2769 | 6.438186 | TGTCATTTGATGCATAGGATAGGA | 57.562 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
2365 | 2770 | 7.110810 | AGATGTCATTTGATGCATAGGATAGG | 58.889 | 38.462 | 0.00 | 0.00 | 30.80 | 2.57 |
2366 | 2771 | 8.041919 | AGAGATGTCATTTGATGCATAGGATAG | 58.958 | 37.037 | 0.00 | 0.00 | 30.80 | 2.08 |
2367 | 2772 | 7.914859 | AGAGATGTCATTTGATGCATAGGATA | 58.085 | 34.615 | 0.00 | 0.00 | 30.80 | 2.59 |
2368 | 2773 | 6.780901 | AGAGATGTCATTTGATGCATAGGAT | 58.219 | 36.000 | 0.00 | 0.00 | 30.80 | 3.24 |
2369 | 2774 | 6.183810 | AGAGATGTCATTTGATGCATAGGA | 57.816 | 37.500 | 0.00 | 0.00 | 30.80 | 2.94 |
2370 | 2775 | 6.879276 | AAGAGATGTCATTTGATGCATAGG | 57.121 | 37.500 | 0.00 | 0.00 | 30.80 | 2.57 |
2371 | 2776 | 8.155821 | AGAAAGAGATGTCATTTGATGCATAG | 57.844 | 34.615 | 0.00 | 0.00 | 30.80 | 2.23 |
2372 | 2777 | 8.515695 | AAGAAAGAGATGTCATTTGATGCATA | 57.484 | 30.769 | 0.00 | 0.00 | 30.80 | 3.14 |
2373 | 2778 | 7.406031 | AAGAAAGAGATGTCATTTGATGCAT | 57.594 | 32.000 | 0.00 | 0.00 | 32.43 | 3.96 |
2374 | 2779 | 6.829229 | AAGAAAGAGATGTCATTTGATGCA | 57.171 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
2388 | 2793 | 9.113838 | GCATCACAATTCCTATAAAGAAAGAGA | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2389 | 2794 | 8.896744 | TGCATCACAATTCCTATAAAGAAAGAG | 58.103 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2390 | 2795 | 8.806429 | TGCATCACAATTCCTATAAAGAAAGA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2391 | 2796 | 9.459640 | CATGCATCACAATTCCTATAAAGAAAG | 57.540 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
2392 | 2797 | 8.970020 | ACATGCATCACAATTCCTATAAAGAAA | 58.030 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2393 | 2798 | 8.523915 | ACATGCATCACAATTCCTATAAAGAA | 57.476 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2394 | 2799 | 7.774625 | TGACATGCATCACAATTCCTATAAAGA | 59.225 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2395 | 2800 | 7.933396 | TGACATGCATCACAATTCCTATAAAG | 58.067 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2396 | 2801 | 7.878547 | TGACATGCATCACAATTCCTATAAA | 57.121 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2411 | 2816 | 1.567649 | AGGAAGTGGGATGACATGCAT | 59.432 | 47.619 | 9.33 | 0.00 | 40.77 | 3.96 |
2412 | 2817 | 0.994247 | AGGAAGTGGGATGACATGCA | 59.006 | 50.000 | 9.33 | 0.00 | 0.00 | 3.96 |
2413 | 2818 | 3.144506 | CATAGGAAGTGGGATGACATGC | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2414 | 2819 | 4.694760 | TCATAGGAAGTGGGATGACATG | 57.305 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
2415 | 2820 | 5.919348 | AATCATAGGAAGTGGGATGACAT | 57.081 | 39.130 | 0.00 | 0.00 | 31.41 | 3.06 |
2416 | 2821 | 5.715439 | AAATCATAGGAAGTGGGATGACA | 57.285 | 39.130 | 0.00 | 0.00 | 31.41 | 3.58 |
2417 | 2822 | 5.532779 | GGAAAATCATAGGAAGTGGGATGAC | 59.467 | 44.000 | 0.00 | 0.00 | 31.41 | 3.06 |
2418 | 2823 | 5.433051 | AGGAAAATCATAGGAAGTGGGATGA | 59.567 | 40.000 | 0.00 | 0.00 | 33.09 | 2.92 |
2419 | 2824 | 5.699143 | AGGAAAATCATAGGAAGTGGGATG | 58.301 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2420 | 2825 | 7.654287 | ATAGGAAAATCATAGGAAGTGGGAT | 57.346 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2421 | 2826 | 7.794683 | AGTATAGGAAAATCATAGGAAGTGGGA | 59.205 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
2422 | 2827 | 7.978925 | AGTATAGGAAAATCATAGGAAGTGGG | 58.021 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
2440 | 2845 | 9.937876 | TGGTTCATAGGATAGGAATAGTATAGG | 57.062 | 37.037 | 0.00 | 0.00 | 43.72 | 2.57 |
2444 | 2849 | 9.101325 | CCTTTGGTTCATAGGATAGGAATAGTA | 57.899 | 37.037 | 0.00 | 0.00 | 43.72 | 1.82 |
2445 | 2850 | 7.794683 | TCCTTTGGTTCATAGGATAGGAATAGT | 59.205 | 37.037 | 3.54 | 0.00 | 43.72 | 2.12 |
2446 | 2851 | 8.207350 | TCCTTTGGTTCATAGGATAGGAATAG | 57.793 | 38.462 | 3.54 | 0.00 | 43.72 | 1.73 |
2447 | 2852 | 7.237679 | CCTCCTTTGGTTCATAGGATAGGAATA | 59.762 | 40.741 | 7.38 | 0.00 | 43.72 | 1.75 |
2448 | 2853 | 6.044871 | CCTCCTTTGGTTCATAGGATAGGAAT | 59.955 | 42.308 | 7.38 | 0.00 | 43.72 | 3.01 |
2449 | 2854 | 5.369699 | CCTCCTTTGGTTCATAGGATAGGAA | 59.630 | 44.000 | 7.38 | 0.00 | 39.94 | 3.36 |
2450 | 2855 | 4.907875 | CCTCCTTTGGTTCATAGGATAGGA | 59.092 | 45.833 | 7.38 | 0.00 | 39.94 | 2.94 |
2451 | 2856 | 4.907875 | TCCTCCTTTGGTTCATAGGATAGG | 59.092 | 45.833 | 7.38 | 6.86 | 39.94 | 2.57 |
2452 | 2857 | 6.100424 | AGTTCCTCCTTTGGTTCATAGGATAG | 59.900 | 42.308 | 7.38 | 3.92 | 39.94 | 2.08 |
2453 | 2858 | 5.970640 | AGTTCCTCCTTTGGTTCATAGGATA | 59.029 | 40.000 | 7.38 | 0.00 | 39.94 | 2.59 |
2454 | 2859 | 4.790790 | AGTTCCTCCTTTGGTTCATAGGAT | 59.209 | 41.667 | 7.38 | 0.00 | 39.94 | 3.24 |
2455 | 2860 | 4.175962 | AGTTCCTCCTTTGGTTCATAGGA | 58.824 | 43.478 | 6.86 | 6.86 | 38.81 | 2.94 |
2456 | 2861 | 4.576330 | AGTTCCTCCTTTGGTTCATAGG | 57.424 | 45.455 | 0.00 | 0.00 | 34.61 | 2.57 |
2457 | 2862 | 6.294731 | CCAAAAGTTCCTCCTTTGGTTCATAG | 60.295 | 42.308 | 4.92 | 0.00 | 34.94 | 2.23 |
2458 | 2863 | 5.538433 | CCAAAAGTTCCTCCTTTGGTTCATA | 59.462 | 40.000 | 4.92 | 0.00 | 34.94 | 2.15 |
2459 | 2864 | 4.344968 | CCAAAAGTTCCTCCTTTGGTTCAT | 59.655 | 41.667 | 4.92 | 0.00 | 34.94 | 2.57 |
2460 | 2865 | 3.704061 | CCAAAAGTTCCTCCTTTGGTTCA | 59.296 | 43.478 | 4.92 | 0.00 | 34.94 | 3.18 |
2461 | 2866 | 3.069586 | CCCAAAAGTTCCTCCTTTGGTTC | 59.930 | 47.826 | 10.89 | 0.00 | 34.94 | 3.62 |
2462 | 2867 | 3.038280 | CCCAAAAGTTCCTCCTTTGGTT | 58.962 | 45.455 | 10.89 | 0.00 | 34.94 | 3.67 |
2463 | 2868 | 2.023404 | ACCCAAAAGTTCCTCCTTTGGT | 60.023 | 45.455 | 10.89 | 1.17 | 34.94 | 3.67 |
2464 | 2869 | 2.628178 | GACCCAAAAGTTCCTCCTTTGG | 59.372 | 50.000 | 5.93 | 5.93 | 34.94 | 3.28 |
2465 | 2870 | 3.295973 | TGACCCAAAAGTTCCTCCTTTG | 58.704 | 45.455 | 0.00 | 0.00 | 34.94 | 2.77 |
2466 | 2871 | 3.680777 | TGACCCAAAAGTTCCTCCTTT | 57.319 | 42.857 | 0.00 | 0.00 | 36.23 | 3.11 |
2467 | 2872 | 3.680777 | TTGACCCAAAAGTTCCTCCTT | 57.319 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
2468 | 2873 | 3.767711 | GATTGACCCAAAAGTTCCTCCT | 58.232 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2469 | 2874 | 2.488153 | CGATTGACCCAAAAGTTCCTCC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2470 | 2875 | 3.146847 | ACGATTGACCCAAAAGTTCCTC | 58.853 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2471 | 2876 | 3.223674 | ACGATTGACCCAAAAGTTCCT | 57.776 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
2472 | 2877 | 3.316868 | TCAACGATTGACCCAAAAGTTCC | 59.683 | 43.478 | 0.00 | 0.00 | 34.08 | 3.62 |
2473 | 2878 | 4.561735 | TCAACGATTGACCCAAAAGTTC | 57.438 | 40.909 | 0.00 | 0.00 | 34.08 | 3.01 |
2500 | 2905 | 1.705256 | TCGACAAGGCGTGTTCATAC | 58.295 | 50.000 | 7.66 | 0.00 | 41.96 | 2.39 |
2510 | 2915 | 0.169009 | GCAACAAGGATCGACAAGGC | 59.831 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2550 | 2955 | 8.686334 | CAGACCAGTATGCCTAAATTTAACAAT | 58.314 | 33.333 | 0.00 | 0.00 | 31.97 | 2.71 |
2552 | 2957 | 7.120579 | CACAGACCAGTATGCCTAAATTTAACA | 59.879 | 37.037 | 0.00 | 1.56 | 31.97 | 2.41 |
2572 | 2977 | 0.320771 | ACCAATCGCTCACCACAGAC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2614 | 3019 | 4.009675 | ACGCATACCAAACATTGATGAGT | 58.990 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2621 | 3026 | 3.085533 | TGCCTTACGCATACCAAACATT | 58.914 | 40.909 | 0.00 | 0.00 | 44.64 | 2.71 |
2703 | 3109 | 1.871676 | CAGAGACCATGAATGCATCGG | 59.128 | 52.381 | 0.00 | 0.95 | 30.68 | 4.18 |
2714 | 3120 | 0.833287 | ATTAGGCGCACAGAGACCAT | 59.167 | 50.000 | 10.83 | 0.00 | 0.00 | 3.55 |
2888 | 3294 | 2.158914 | AGTGCTCATGTCACAGTCAACA | 60.159 | 45.455 | 18.13 | 0.00 | 36.93 | 3.33 |
2979 | 3385 | 3.359033 | TCGTATATTATGGGACGGAGGG | 58.641 | 50.000 | 0.00 | 0.00 | 36.02 | 4.30 |
2998 | 3404 | 4.394795 | CTCCTTAATGTCAAAAACGCTCG | 58.605 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
2999 | 3405 | 4.379499 | CCCTCCTTAATGTCAAAAACGCTC | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 5.03 |
3013 | 3419 | 5.011738 | CACTTGAGTTGTACTCCCTCCTTAA | 59.988 | 44.000 | 4.52 | 0.00 | 44.44 | 1.85 |
3306 | 3713 | 8.250332 | TGAGTTGATCTATAATTTTGTTTGGGC | 58.750 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
3690 | 4098 | 7.488322 | AGCAAACTTAAACAGAAAGCACATAA | 58.512 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
4034 | 4444 | 6.815089 | ACAGAAGAACAAAATACATGCCAAA | 58.185 | 32.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4035 | 4445 | 6.403866 | ACAGAAGAACAAAATACATGCCAA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
4036 | 4446 | 7.230510 | AGTTACAGAAGAACAAAATACATGCCA | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
4143 | 4553 | 5.965918 | GCTTGTGACAAGTCAAAGAGTAAAC | 59.034 | 40.000 | 24.51 | 1.59 | 41.85 | 2.01 |
4259 | 4669 | 8.129496 | TGTTCTATCAGGTACACATACTTGAA | 57.871 | 34.615 | 3.74 | 0.00 | 46.83 | 2.69 |
4344 | 4755 | 6.512253 | GCTTGATGATCAACGCTCATTTATCA | 60.512 | 38.462 | 16.80 | 0.00 | 33.56 | 2.15 |
4423 | 4834 | 3.909430 | TCCTGTTGTACTTGCTCTTACG | 58.091 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4424 | 4835 | 6.204882 | ACAATTCCTGTTGTACTTGCTCTTAC | 59.795 | 38.462 | 0.00 | 0.00 | 40.35 | 2.34 |
4425 | 4836 | 6.296026 | ACAATTCCTGTTGTACTTGCTCTTA | 58.704 | 36.000 | 0.00 | 0.00 | 40.35 | 2.10 |
4426 | 4837 | 5.133221 | ACAATTCCTGTTGTACTTGCTCTT | 58.867 | 37.500 | 0.00 | 0.00 | 40.35 | 2.85 |
4449 | 4860 | 6.019656 | AGTGATGATCAGTCTTCCTAGGTA | 57.980 | 41.667 | 9.08 | 0.00 | 0.00 | 3.08 |
4471 | 4882 | 1.212688 | TGCCCCATTCATACTGTGGAG | 59.787 | 52.381 | 0.00 | 0.00 | 34.94 | 3.86 |
4512 | 4923 | 7.961827 | TGCACAAACTTGAATGAAAATTTTGAC | 59.038 | 29.630 | 8.47 | 0.00 | 33.68 | 3.18 |
4522 | 4934 | 2.757314 | TGTGGTGCACAAACTTGAATGA | 59.243 | 40.909 | 20.43 | 0.00 | 41.69 | 2.57 |
4616 | 5028 | 5.828328 | TGGTATAGACAGACTCCACTATGTG | 59.172 | 44.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4617 | 5029 | 5.828859 | GTGGTATAGACAGACTCCACTATGT | 59.171 | 44.000 | 0.00 | 0.00 | 37.75 | 2.29 |
4618 | 5030 | 5.828328 | TGTGGTATAGACAGACTCCACTATG | 59.172 | 44.000 | 12.25 | 0.00 | 39.92 | 2.23 |
4619 | 5031 | 6.014771 | TGTGGTATAGACAGACTCCACTAT | 57.985 | 41.667 | 12.25 | 0.00 | 39.92 | 2.12 |
4620 | 5032 | 5.446260 | TGTGGTATAGACAGACTCCACTA | 57.554 | 43.478 | 12.25 | 0.00 | 39.92 | 2.74 |
4621 | 5033 | 4.317530 | TGTGGTATAGACAGACTCCACT | 57.682 | 45.455 | 12.25 | 0.00 | 39.92 | 4.00 |
4622 | 5034 | 4.890581 | AGATGTGGTATAGACAGACTCCAC | 59.109 | 45.833 | 0.00 | 0.00 | 39.77 | 4.02 |
4623 | 5035 | 5.130705 | AGATGTGGTATAGACAGACTCCA | 57.869 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4624 | 5036 | 6.535540 | TCTAGATGTGGTATAGACAGACTCC | 58.464 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4625 | 5037 | 8.039603 | CATCTAGATGTGGTATAGACAGACTC | 57.960 | 42.308 | 22.42 | 0.00 | 33.73 | 3.36 |
4626 | 5038 | 7.994425 | CATCTAGATGTGGTATAGACAGACT | 57.006 | 40.000 | 22.42 | 0.00 | 33.73 | 3.24 |
4719 | 5132 | 1.006102 | ACACAGTCGGAAGGAAGCG | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.68 |
4740 | 5153 | 1.164041 | ACAACCGACGGCAAAGGAAG | 61.164 | 55.000 | 15.39 | 0.00 | 0.00 | 3.46 |
4742 | 5155 | 1.595929 | GACAACCGACGGCAAAGGA | 60.596 | 57.895 | 15.39 | 0.00 | 0.00 | 3.36 |
4753 | 5166 | 1.004292 | GGACAAACAACGAGACAACCG | 60.004 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
4784 | 5197 | 2.661866 | GTGTGGCAGCGTCGTTCT | 60.662 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
4785 | 5198 | 3.712881 | GGTGTGGCAGCGTCGTTC | 61.713 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
4809 | 6587 | 2.476619 | GACTGTGTCAACATCTGGAACG | 59.523 | 50.000 | 0.00 | 0.00 | 35.22 | 3.95 |
4847 | 7810 | 2.238521 | CCCAACAACAGTTACATGGCT | 58.761 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
4894 | 7857 | 3.314913 | TCGATGCAGCTCTTTTGAACAAA | 59.685 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4895 | 7858 | 2.877786 | TCGATGCAGCTCTTTTGAACAA | 59.122 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
4896 | 7859 | 2.224079 | GTCGATGCAGCTCTTTTGAACA | 59.776 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4897 | 7860 | 2.224079 | TGTCGATGCAGCTCTTTTGAAC | 59.776 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4909 | 7872 | 1.402787 | TGCCTAGATCTGTCGATGCA | 58.597 | 50.000 | 5.18 | 2.25 | 0.00 | 3.96 |
4948 | 7911 | 5.557866 | ACCCACAACTAGAAAAGGATACAC | 58.442 | 41.667 | 0.00 | 0.00 | 41.41 | 2.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.