Multiple sequence alignment - TraesCS6D01G248800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G248800 chr6D 100.000 7017 0 0 1 7017 352350536 352357552 0.000000e+00 12959.0
1 TraesCS6D01G248800 chr6D 80.634 2019 316 58 4036 6031 352152115 352154081 0.000000e+00 1493.0
2 TraesCS6D01G248800 chr6D 86.533 750 67 21 998 1738 352149382 352150106 0.000000e+00 795.0
3 TraesCS6D01G248800 chr6D 95.509 334 15 0 1 334 96812349 96812016 1.040000e-147 534.0
4 TraesCS6D01G248800 chr6D 79.545 220 40 5 368 583 428483058 428483276 1.220000e-32 152.0
5 TraesCS6D01G248800 chr6B 96.331 3025 87 11 3934 6950 526721684 526718676 0.000000e+00 4950.0
6 TraesCS6D01G248800 chr6B 93.634 2105 82 21 602 2695 526725479 526723416 0.000000e+00 3097.0
7 TraesCS6D01G248800 chr6B 81.031 1998 301 50 4050 6024 526738542 526736600 0.000000e+00 1519.0
8 TraesCS6D01G248800 chr6B 86.148 758 80 20 998 1741 526742218 526741472 0.000000e+00 795.0
9 TraesCS6D01G248800 chr6B 93.686 491 21 7 2712 3193 526723206 526722717 0.000000e+00 726.0
10 TraesCS6D01G248800 chr6B 95.349 172 6 1 3646 3815 526721980 526721809 8.970000e-69 272.0
11 TraesCS6D01G248800 chr6B 83.511 188 13 5 3196 3381 526722514 526722343 7.290000e-35 159.0
12 TraesCS6D01G248800 chr6B 97.436 39 1 0 3485 3523 526722323 526722285 4.540000e-07 67.6
13 TraesCS6D01G248800 chr6A 94.467 3163 100 22 3911 7017 490496679 490493536 0.000000e+00 4802.0
14 TraesCS6D01G248800 chr6A 92.308 2418 109 27 326 2700 490500824 490498441 0.000000e+00 3363.0
15 TraesCS6D01G248800 chr6A 91.325 830 50 11 2707 3523 490498243 490497423 0.000000e+00 1114.0
16 TraesCS6D01G248800 chr6A 81.609 1305 187 36 4754 6035 490837621 490836347 0.000000e+00 1031.0
17 TraesCS6D01G248800 chr6A 86.220 762 76 22 998 1741 490840957 490840207 0.000000e+00 798.0
18 TraesCS6D01G248800 chr6A 93.750 160 3 2 3646 3798 490497105 490496946 4.230000e-57 233.0
19 TraesCS6D01G248800 chr6A 92.958 71 3 2 3522 3591 490497273 490497204 1.250000e-17 102.0
20 TraesCS6D01G248800 chr6A 96.429 28 1 0 3586 3613 490497163 490497136 5.900000e-01 47.3
21 TraesCS6D01G248800 chr2A 86.187 2570 244 57 3941 6459 763367281 763369790 0.000000e+00 2676.0
22 TraesCS6D01G248800 chr2A 86.731 731 67 16 1060 1769 763364621 763365342 0.000000e+00 785.0
23 TraesCS6D01G248800 chr2A 78.788 264 45 8 327 583 146347167 146347426 4.350000e-37 167.0
24 TraesCS6D01G248800 chr2A 80.526 190 35 2 5107 5295 694633024 694633212 2.040000e-30 145.0
25 TraesCS6D01G248800 chr2A 87.500 96 12 0 1629 1724 694631624 694631719 2.070000e-20 111.0
26 TraesCS6D01G248800 chr2B 86.680 2425 226 53 4051 6441 797625442 797627803 0.000000e+00 2599.0
27 TraesCS6D01G248800 chr2B 92.842 461 33 0 1060 1520 797622799 797623259 0.000000e+00 669.0
28 TraesCS6D01G248800 chr2B 79.474 190 37 2 5107 5295 660678011 660678199 4.420000e-27 134.0
29 TraesCS6D01G248800 chrUn 84.692 1398 150 38 4754 6110 84016286 84014912 0.000000e+00 1338.0
30 TraesCS6D01G248800 chrUn 84.746 708 96 7 3951 4648 84017107 84016402 0.000000e+00 699.0
31 TraesCS6D01G248800 chr7D 84.384 1396 158 34 4754 6110 59733574 59732200 0.000000e+00 1315.0
32 TraesCS6D01G248800 chr7D 86.356 623 83 2 4027 4648 59734311 59733690 0.000000e+00 678.0
33 TraesCS6D01G248800 chr7D 88.566 516 38 13 1013 1519 59738583 59738080 2.160000e-169 606.0
34 TraesCS6D01G248800 chr7D 95.808 334 13 1 1 333 42757246 42756913 8.010000e-149 538.0
35 TraesCS6D01G248800 chr7D 94.444 108 6 0 1629 1736 59737966 59737859 4.350000e-37 167.0
36 TraesCS6D01G248800 chr7A 84.583 707 106 1 3944 4647 63874515 63875221 0.000000e+00 699.0
37 TraesCS6D01G248800 chr7A 90.693 462 30 5 1066 1527 63872419 63872867 2.800000e-168 603.0
38 TraesCS6D01G248800 chr3D 96.364 330 11 1 1 330 498934278 498934606 6.190000e-150 542.0
39 TraesCS6D01G248800 chr3D 96.073 331 12 1 1 330 515253657 515253987 8.010000e-149 538.0
40 TraesCS6D01G248800 chr5D 96.061 330 13 0 1 330 532662439 532662110 8.010000e-149 538.0
41 TraesCS6D01G248800 chr4D 94.813 347 14 4 1 343 443199924 443200270 8.010000e-149 538.0
42 TraesCS6D01G248800 chr4D 95.509 334 15 0 1 334 461002455 461002122 1.040000e-147 534.0
43 TraesCS6D01G248800 chr4A 96.061 330 13 0 1 330 76409967 76409638 8.010000e-149 538.0
44 TraesCS6D01G248800 chr1D 96.061 330 12 1 1 330 40806590 40806918 2.880000e-148 536.0
45 TraesCS6D01G248800 chr2D 80.077 261 42 7 330 583 154611740 154611483 1.200000e-42 185.0
46 TraesCS6D01G248800 chr2D 85.859 99 14 0 1626 1724 554475783 554475881 9.630000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G248800 chr6D 352350536 352357552 7016 False 12959.000000 12959 100.0000 1 7017 1 chr6D.!!$F1 7016
1 TraesCS6D01G248800 chr6D 352149382 352154081 4699 False 1144.000000 1493 83.5835 998 6031 2 chr6D.!!$F3 5033
2 TraesCS6D01G248800 chr6B 526718676 526725479 6803 True 1545.266667 4950 93.3245 602 6950 6 chr6B.!!$R1 6348
3 TraesCS6D01G248800 chr6B 526736600 526742218 5618 True 1157.000000 1519 83.5895 998 6024 2 chr6B.!!$R2 5026
4 TraesCS6D01G248800 chr6A 490493536 490500824 7288 True 1610.216667 4802 93.5395 326 7017 6 chr6A.!!$R1 6691
5 TraesCS6D01G248800 chr6A 490836347 490840957 4610 True 914.500000 1031 83.9145 998 6035 2 chr6A.!!$R2 5037
6 TraesCS6D01G248800 chr2A 763364621 763369790 5169 False 1730.500000 2676 86.4590 1060 6459 2 chr2A.!!$F3 5399
7 TraesCS6D01G248800 chr2B 797622799 797627803 5004 False 1634.000000 2599 89.7610 1060 6441 2 chr2B.!!$F2 5381
8 TraesCS6D01G248800 chrUn 84014912 84017107 2195 True 1018.500000 1338 84.7190 3951 6110 2 chrUn.!!$R1 2159
9 TraesCS6D01G248800 chr7D 59732200 59738583 6383 True 691.500000 1315 88.4375 1013 6110 4 chr7D.!!$R2 5097
10 TraesCS6D01G248800 chr7A 63872419 63875221 2802 False 651.000000 699 87.6380 1066 4647 2 chr7A.!!$F1 3581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 588 0.299597 AATTTTATCCGTCGCGCGTC 59.700 50.0 30.98 23.85 39.32 5.19 F
1619 1657 0.877649 CACCTGGCATCTCGGAATCG 60.878 60.0 0.00 0.00 37.82 3.34 F
2293 3940 0.331954 GTCCCCCTTCCTTTTCCTCC 59.668 60.0 0.00 0.00 0.00 4.30 F
2445 4095 0.442310 CCAGTACGTTGTCCAATGCG 59.558 55.0 0.00 0.00 0.00 4.73 F
3640 8458 0.244450 ATTTGCGTGCAACTGGATGG 59.756 50.0 6.80 0.00 35.46 3.51 F
5222 12454 0.037419 TGAGCATGTCGCAAGCAGTA 60.037 50.0 9.13 0.00 46.13 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 3874 0.524392 GTCAGTGTCTCGCGAGATGG 60.524 60.000 38.52 26.56 39.97 3.51 R
3312 7817 0.179129 GTTTGGAATGATGCCGCTGG 60.179 55.000 0.00 0.00 0.00 4.85 R
3313 7818 0.813184 AGTTTGGAATGATGCCGCTG 59.187 50.000 0.00 0.00 0.00 5.18 R
4001 11140 1.461127 GTAGTGCAGAACTTTCGCAGG 59.539 52.381 8.19 0.00 40.56 4.85 R
5372 12624 0.249114 TGGATAAATACAGCGCGCGA 60.249 50.000 37.18 13.84 0.00 5.87 R
6137 13404 3.045601 ACACGCATCTAGAAGCTTTGT 57.954 42.857 17.18 15.82 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.450807 AGCAATAAAACTTAACGATCATTATGC 57.549 29.630 0.00 0.00 0.00 3.14
51 52 9.450807 GCAATAAAACTTAACGATCATTATGCT 57.549 29.630 0.00 0.00 0.00 3.79
56 57 8.732746 AAACTTAACGATCATTATGCTAAGGT 57.267 30.769 0.00 0.00 0.00 3.50
57 58 9.826574 AAACTTAACGATCATTATGCTAAGGTA 57.173 29.630 0.00 0.00 0.00 3.08
58 59 9.826574 AACTTAACGATCATTATGCTAAGGTAA 57.173 29.630 0.00 0.00 0.00 2.85
59 60 9.257651 ACTTAACGATCATTATGCTAAGGTAAC 57.742 33.333 0.00 0.00 0.00 2.50
60 61 9.256477 CTTAACGATCATTATGCTAAGGTAACA 57.744 33.333 0.00 0.00 41.41 2.41
61 62 7.715265 AACGATCATTATGCTAAGGTAACAG 57.285 36.000 0.00 0.00 41.41 3.16
62 63 7.050970 ACGATCATTATGCTAAGGTAACAGA 57.949 36.000 0.00 0.00 41.41 3.41
63 64 7.671302 ACGATCATTATGCTAAGGTAACAGAT 58.329 34.615 0.00 0.00 41.41 2.90
64 65 7.600375 ACGATCATTATGCTAAGGTAACAGATG 59.400 37.037 0.00 0.00 41.41 2.90
65 66 7.063898 CGATCATTATGCTAAGGTAACAGATGG 59.936 40.741 0.00 0.00 41.41 3.51
66 67 6.533730 TCATTATGCTAAGGTAACAGATGGG 58.466 40.000 0.00 0.00 41.41 4.00
67 68 5.968676 TTATGCTAAGGTAACAGATGGGT 57.031 39.130 0.00 0.00 41.41 4.51
68 69 3.906720 TGCTAAGGTAACAGATGGGTC 57.093 47.619 0.00 0.00 41.41 4.46
69 70 3.450904 TGCTAAGGTAACAGATGGGTCT 58.549 45.455 0.00 0.00 41.41 3.85
70 71 3.844211 TGCTAAGGTAACAGATGGGTCTT 59.156 43.478 0.00 0.00 41.41 3.01
71 72 4.192317 GCTAAGGTAACAGATGGGTCTTG 58.808 47.826 0.00 0.00 41.41 3.02
72 73 4.323562 GCTAAGGTAACAGATGGGTCTTGT 60.324 45.833 0.00 0.00 41.41 3.16
73 74 3.983044 AGGTAACAGATGGGTCTTGTC 57.017 47.619 0.00 0.00 41.41 3.18
74 75 2.572104 AGGTAACAGATGGGTCTTGTCC 59.428 50.000 0.00 0.00 41.41 4.02
75 76 2.304761 GGTAACAGATGGGTCTTGTCCA 59.695 50.000 0.00 0.00 38.82 4.02
76 77 3.054361 GGTAACAGATGGGTCTTGTCCAT 60.054 47.826 0.00 0.00 46.73 3.41
82 83 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
83 84 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
84 85 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
85 86 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
86 87 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
87 88 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
88 89 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
89 90 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
90 91 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
91 92 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
92 93 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
93 94 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
94 95 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
95 96 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
96 97 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
105 106 6.685657 TCATTCTCCTAATGATGTGATCTCG 58.314 40.000 0.00 0.00 32.21 4.04
106 107 6.266330 TCATTCTCCTAATGATGTGATCTCGT 59.734 38.462 0.00 0.00 32.21 4.18
107 108 6.471233 TTCTCCTAATGATGTGATCTCGTT 57.529 37.500 0.00 0.00 0.00 3.85
108 109 6.078202 TCTCCTAATGATGTGATCTCGTTC 57.922 41.667 0.00 0.00 0.00 3.95
109 110 5.594317 TCTCCTAATGATGTGATCTCGTTCA 59.406 40.000 0.00 0.00 0.00 3.18
110 111 6.266330 TCTCCTAATGATGTGATCTCGTTCAT 59.734 38.462 7.03 7.03 0.00 2.57
111 112 6.450545 TCCTAATGATGTGATCTCGTTCATC 58.549 40.000 11.28 9.42 37.68 2.92
112 113 6.040842 TCCTAATGATGTGATCTCGTTCATCA 59.959 38.462 8.70 8.70 46.43 3.07
113 114 6.703165 CCTAATGATGTGATCTCGTTCATCAA 59.297 38.462 10.02 7.86 45.83 2.57
114 115 6.990341 AATGATGTGATCTCGTTCATCAAA 57.010 33.333 10.02 0.85 45.83 2.69
115 116 7.563888 AATGATGTGATCTCGTTCATCAAAT 57.436 32.000 10.02 4.59 45.83 2.32
116 117 6.354039 TGATGTGATCTCGTTCATCAAATG 57.646 37.500 0.00 0.00 42.01 2.32
117 118 6.108015 TGATGTGATCTCGTTCATCAAATGA 58.892 36.000 0.00 0.00 42.01 2.57
118 119 5.784750 TGTGATCTCGTTCATCAAATGAC 57.215 39.130 0.00 0.00 39.39 3.06
119 120 5.237048 TGTGATCTCGTTCATCAAATGACA 58.763 37.500 0.00 0.00 39.39 3.58
120 121 5.700373 TGTGATCTCGTTCATCAAATGACAA 59.300 36.000 0.00 0.00 39.39 3.18
121 122 6.017933 GTGATCTCGTTCATCAAATGACAAC 58.982 40.000 0.00 0.00 39.39 3.32
122 123 5.700373 TGATCTCGTTCATCAAATGACAACA 59.300 36.000 0.00 0.00 39.39 3.33
123 124 5.342806 TCTCGTTCATCAAATGACAACAC 57.657 39.130 7.48 0.00 39.39 3.32
124 125 4.813697 TCTCGTTCATCAAATGACAACACA 59.186 37.500 7.48 0.00 39.39 3.72
125 126 5.469760 TCTCGTTCATCAAATGACAACACAT 59.530 36.000 7.48 0.00 39.39 3.21
126 127 5.451039 TCGTTCATCAAATGACAACACATG 58.549 37.500 0.00 0.00 39.39 3.21
142 143 7.871853 ACAACACATGTCTATGGTTAGAAAAC 58.128 34.615 0.00 0.00 37.96 2.43
143 144 7.719633 ACAACACATGTCTATGGTTAGAAAACT 59.280 33.333 0.00 0.00 37.96 2.66
144 145 8.567948 CAACACATGTCTATGGTTAGAAAACTT 58.432 33.333 0.00 0.00 38.66 2.66
145 146 9.787435 AACACATGTCTATGGTTAGAAAACTTA 57.213 29.630 0.00 0.00 38.66 2.24
146 147 9.787435 ACACATGTCTATGGTTAGAAAACTTAA 57.213 29.630 0.00 0.00 38.66 1.85
148 149 9.227777 ACATGTCTATGGTTAGAAAACTTAACC 57.772 33.333 7.13 7.13 46.63 2.85
162 163 9.893305 AGAAAACTTAACCATCTTTGATTAACG 57.107 29.630 0.00 0.00 0.00 3.18
163 164 9.887406 GAAAACTTAACCATCTTTGATTAACGA 57.113 29.630 0.00 0.00 0.00 3.85
164 165 9.893305 AAAACTTAACCATCTTTGATTAACGAG 57.107 29.630 0.00 0.00 0.00 4.18
165 166 7.073342 ACTTAACCATCTTTGATTAACGAGC 57.927 36.000 0.00 0.00 0.00 5.03
166 167 6.879458 ACTTAACCATCTTTGATTAACGAGCT 59.121 34.615 0.00 0.00 0.00 4.09
167 168 8.038944 ACTTAACCATCTTTGATTAACGAGCTA 58.961 33.333 0.00 0.00 0.00 3.32
168 169 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
169 170 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
170 171 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
171 172 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
172 173 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
173 174 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
174 175 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
175 176 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
176 177 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
177 178 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
178 179 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
179 180 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
180 181 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
181 182 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
182 183 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
183 184 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
184 185 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
185 186 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
186 187 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
187 188 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
188 189 5.182380 GCTAGTCAAGTAGAGGCATACTAGG 59.818 48.000 0.00 0.67 36.85 3.02
189 190 4.475345 AGTCAAGTAGAGGCATACTAGGG 58.525 47.826 3.23 0.00 34.90 3.53
190 191 4.168283 AGTCAAGTAGAGGCATACTAGGGA 59.832 45.833 3.23 0.66 34.90 4.20
191 192 4.278919 GTCAAGTAGAGGCATACTAGGGAC 59.721 50.000 3.23 7.70 34.90 4.46
192 193 4.079385 TCAAGTAGAGGCATACTAGGGACA 60.079 45.833 3.23 0.00 34.90 4.02
193 194 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
194 195 3.464080 AGTAGAGGCATACTAGGGACACT 59.536 47.826 0.00 0.00 34.21 3.55
195 196 3.406512 AGAGGCATACTAGGGACACTT 57.593 47.619 0.00 0.00 0.00 3.16
196 197 3.725634 AGAGGCATACTAGGGACACTTT 58.274 45.455 0.00 0.00 0.00 2.66
197 198 3.452627 AGAGGCATACTAGGGACACTTTG 59.547 47.826 0.00 0.00 0.00 2.77
198 199 3.182152 AGGCATACTAGGGACACTTTGT 58.818 45.455 0.00 0.00 0.00 2.83
199 200 3.587506 AGGCATACTAGGGACACTTTGTT 59.412 43.478 0.00 0.00 0.00 2.83
200 201 4.042934 AGGCATACTAGGGACACTTTGTTT 59.957 41.667 0.00 0.00 0.00 2.83
201 202 4.765339 GGCATACTAGGGACACTTTGTTTT 59.235 41.667 0.00 0.00 0.00 2.43
202 203 5.335661 GGCATACTAGGGACACTTTGTTTTG 60.336 44.000 0.00 0.00 0.00 2.44
203 204 5.240844 GCATACTAGGGACACTTTGTTTTGT 59.759 40.000 0.00 0.00 0.00 2.83
204 205 6.567891 GCATACTAGGGACACTTTGTTTTGTC 60.568 42.308 0.00 0.00 41.28 3.18
205 206 5.112129 ACTAGGGACACTTTGTTTTGTCT 57.888 39.130 0.00 0.00 41.65 3.41
206 207 6.243216 ACTAGGGACACTTTGTTTTGTCTA 57.757 37.500 0.00 0.00 41.65 2.59
207 208 6.838382 ACTAGGGACACTTTGTTTTGTCTAT 58.162 36.000 0.00 0.00 41.65 1.98
208 209 6.710744 ACTAGGGACACTTTGTTTTGTCTATG 59.289 38.462 0.00 0.00 41.65 2.23
209 210 5.445964 AGGGACACTTTGTTTTGTCTATGT 58.554 37.500 2.04 0.00 41.65 2.29
210 211 6.597562 AGGGACACTTTGTTTTGTCTATGTA 58.402 36.000 2.04 0.00 41.65 2.29
211 212 7.231467 AGGGACACTTTGTTTTGTCTATGTAT 58.769 34.615 2.04 0.00 41.65 2.29
212 213 7.724061 AGGGACACTTTGTTTTGTCTATGTATT 59.276 33.333 2.04 0.00 41.65 1.89
213 214 8.021396 GGGACACTTTGTTTTGTCTATGTATTC 58.979 37.037 2.04 0.00 41.65 1.75
214 215 8.564574 GGACACTTTGTTTTGTCTATGTATTCA 58.435 33.333 2.04 0.00 41.65 2.57
215 216 9.382244 GACACTTTGTTTTGTCTATGTATTCAC 57.618 33.333 0.00 0.00 39.30 3.18
216 217 8.898761 ACACTTTGTTTTGTCTATGTATTCACA 58.101 29.630 0.00 0.00 39.52 3.58
217 218 9.169468 CACTTTGTTTTGTCTATGTATTCACAC 57.831 33.333 0.00 0.00 37.54 3.82
218 219 8.898761 ACTTTGTTTTGTCTATGTATTCACACA 58.101 29.630 0.00 0.00 37.54 3.72
219 220 9.897744 CTTTGTTTTGTCTATGTATTCACACAT 57.102 29.630 0.00 0.00 41.88 3.21
220 221 9.676195 TTTGTTTTGTCTATGTATTCACACATG 57.324 29.630 0.00 0.00 39.46 3.21
221 222 8.389779 TGTTTTGTCTATGTATTCACACATGT 57.610 30.769 0.00 0.00 39.46 3.21
222 223 9.495572 TGTTTTGTCTATGTATTCACACATGTA 57.504 29.630 0.00 0.00 39.46 2.29
225 226 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
226 227 9.883142 TTGTCTATGTATTCACACATGTATCAA 57.117 29.630 0.00 0.00 39.46 2.57
227 228 9.533253 TGTCTATGTATTCACACATGTATCAAG 57.467 33.333 0.00 0.00 39.46 3.02
228 229 9.534565 GTCTATGTATTCACACATGTATCAAGT 57.465 33.333 0.00 0.00 39.46 3.16
232 233 8.039603 TGTATTCACACATGTATCAAGTTTCC 57.960 34.615 0.00 0.00 0.00 3.13
233 234 5.605564 TTCACACATGTATCAAGTTTCCG 57.394 39.130 0.00 0.00 0.00 4.30
234 235 4.000325 TCACACATGTATCAAGTTTCCGG 59.000 43.478 0.00 0.00 0.00 5.14
235 236 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
236 237 4.215399 CACACATGTATCAAGTTTCCGGTT 59.785 41.667 0.00 0.00 0.00 4.44
237 238 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
238 239 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
239 240 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
240 241 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
241 242 8.120465 CACATGTATCAAGTTTCCGGTTAATAC 58.880 37.037 0.00 0.00 0.00 1.89
242 243 7.825270 ACATGTATCAAGTTTCCGGTTAATACA 59.175 33.333 0.00 0.88 34.10 2.29
243 244 8.670135 CATGTATCAAGTTTCCGGTTAATACAA 58.330 33.333 0.00 0.00 33.52 2.41
244 245 8.795842 TGTATCAAGTTTCCGGTTAATACAAT 57.204 30.769 0.00 0.00 0.00 2.71
245 246 9.233649 TGTATCAAGTTTCCGGTTAATACAATT 57.766 29.630 0.00 0.00 0.00 2.32
246 247 9.712359 GTATCAAGTTTCCGGTTAATACAATTC 57.288 33.333 0.00 0.00 0.00 2.17
247 248 7.989416 TCAAGTTTCCGGTTAATACAATTCT 57.011 32.000 0.00 0.00 0.00 2.40
248 249 9.675464 ATCAAGTTTCCGGTTAATACAATTCTA 57.325 29.630 0.00 0.00 0.00 2.10
249 250 9.158233 TCAAGTTTCCGGTTAATACAATTCTAG 57.842 33.333 0.00 0.00 0.00 2.43
250 251 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
251 252 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
252 253 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
253 254 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
254 255 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
255 256 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
256 257 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
257 258 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
314 315 8.761575 AACAACAACATTATTATTGCCTTCAG 57.238 30.769 0.00 0.00 0.00 3.02
315 316 7.895759 ACAACAACATTATTATTGCCTTCAGT 58.104 30.769 0.00 0.00 0.00 3.41
316 317 7.814107 ACAACAACATTATTATTGCCTTCAGTG 59.186 33.333 0.00 0.00 0.00 3.66
317 318 7.466746 ACAACATTATTATTGCCTTCAGTGT 57.533 32.000 0.00 0.00 0.00 3.55
318 319 8.574251 ACAACATTATTATTGCCTTCAGTGTA 57.426 30.769 0.00 0.00 0.00 2.90
319 320 9.189156 ACAACATTATTATTGCCTTCAGTGTAT 57.811 29.630 0.00 0.00 0.00 2.29
328 329 7.573968 ATTGCCTTCAGTGTATATTTCCTTC 57.426 36.000 0.00 0.00 0.00 3.46
348 349 7.725251 TCCTTCATTTTTGTCTTAAGCAACAT 58.275 30.769 10.58 5.34 0.00 2.71
350 351 7.439056 CCTTCATTTTTGTCTTAAGCAACATGT 59.561 33.333 18.36 0.00 0.00 3.21
352 353 8.715191 TCATTTTTGTCTTAAGCAACATGTTT 57.285 26.923 8.77 0.00 0.00 2.83
382 383 5.487433 TGACAAGACTCTTGTTGAAACAGA 58.513 37.500 22.58 1.45 40.50 3.41
419 420 9.606631 AAACAGTTTTAAAATTCCTGCAACATA 57.393 25.926 13.94 0.00 0.00 2.29
421 422 9.040939 ACAGTTTTAAAATTCCTGCAACATAAC 57.959 29.630 13.94 0.00 0.00 1.89
422 423 8.495148 CAGTTTTAAAATTCCTGCAACATAACC 58.505 33.333 3.52 0.00 0.00 2.85
423 424 8.428852 AGTTTTAAAATTCCTGCAACATAACCT 58.571 29.630 3.52 0.00 0.00 3.50
424 425 9.051679 GTTTTAAAATTCCTGCAACATAACCTT 57.948 29.630 3.52 0.00 0.00 3.50
425 426 9.620259 TTTTAAAATTCCTGCAACATAACCTTT 57.380 25.926 0.00 0.00 0.00 3.11
426 427 8.600449 TTAAAATTCCTGCAACATAACCTTTG 57.400 30.769 0.00 0.00 0.00 2.77
427 428 5.806654 AATTCCTGCAACATAACCTTTGT 57.193 34.783 0.00 0.00 0.00 2.83
428 429 5.806654 ATTCCTGCAACATAACCTTTGTT 57.193 34.783 0.00 0.00 37.79 2.83
440 441 9.915629 AACATAACCTTTGTTGCGAATAATTTA 57.084 25.926 0.00 0.00 36.02 1.40
454 455 9.577110 TGCGAATAATTTATATAACTAGACCCG 57.423 33.333 0.00 0.00 0.00 5.28
465 466 2.645802 ACTAGACCCGTGTTGCAAAAA 58.354 42.857 0.00 0.00 0.00 1.94
466 467 2.616842 ACTAGACCCGTGTTGCAAAAAG 59.383 45.455 0.00 0.00 0.00 2.27
524 528 1.656818 GGGTTGATCACACGGCCATG 61.657 60.000 2.24 0.00 0.00 3.66
533 537 1.196808 CACACGGCCATGTACAACTTC 59.803 52.381 3.04 0.00 0.00 3.01
538 542 2.024414 GGCCATGTACAACTTCATCCC 58.976 52.381 0.00 0.00 0.00 3.85
552 556 1.064463 TCATCCCATGGTCAAAGAGGC 60.064 52.381 11.73 0.00 0.00 4.70
555 559 1.299648 CCATGGTCAAAGAGGCGGA 59.700 57.895 2.57 0.00 0.00 5.54
557 561 1.079127 ATGGTCAAAGAGGCGGACG 60.079 57.895 0.00 0.00 32.39 4.79
563 567 1.275291 TCAAAGAGGCGGACGATCTTT 59.725 47.619 15.15 15.15 42.49 2.52
579 583 6.416514 ACGATCTTTTAATTTTATCCGTCGC 58.583 36.000 0.00 0.00 0.00 5.19
580 584 5.555191 CGATCTTTTAATTTTATCCGTCGCG 59.445 40.000 0.00 0.00 0.00 5.87
581 585 4.580528 TCTTTTAATTTTATCCGTCGCGC 58.419 39.130 0.00 0.00 0.00 6.86
582 586 2.631663 TTAATTTTATCCGTCGCGCG 57.368 45.000 26.76 26.76 40.95 6.86
583 587 1.558741 TAATTTTATCCGTCGCGCGT 58.441 45.000 30.98 12.90 39.32 6.01
584 588 0.299597 AATTTTATCCGTCGCGCGTC 59.700 50.000 30.98 23.85 39.32 5.19
585 589 1.804273 ATTTTATCCGTCGCGCGTCG 61.804 55.000 35.65 35.65 39.32 5.12
657 661 7.431084 CCTGAACGAAAAAGATTCGAAAAGAAA 59.569 33.333 16.46 0.00 43.97 2.52
659 663 8.794406 TGAACGAAAAAGATTCGAAAAGAAAAG 58.206 29.630 16.46 0.00 43.97 2.27
706 711 3.996921 ACAGCAAGATTCCTGTCTGAT 57.003 42.857 11.29 0.00 37.77 2.90
709 714 5.809001 ACAGCAAGATTCCTGTCTGATTTA 58.191 37.500 11.29 0.00 37.77 1.40
788 793 3.119388 TCAAGTGGCAGCAGCAAATAATC 60.119 43.478 2.65 0.00 44.61 1.75
792 797 1.068127 GGCAGCAGCAAATAATCAGGG 59.932 52.381 2.65 0.00 44.61 4.45
820 825 0.879090 GTCCCAAACAATCCGGACAC 59.121 55.000 6.12 0.00 43.58 3.67
833 838 1.014044 CGGACACAATACGCACAGCT 61.014 55.000 0.00 0.00 0.00 4.24
834 839 1.734377 CGGACACAATACGCACAGCTA 60.734 52.381 0.00 0.00 0.00 3.32
837 842 1.548719 ACACAATACGCACAGCTAGGA 59.451 47.619 0.00 0.00 0.00 2.94
845 850 1.063327 CACAGCTAGGAGACGCTCG 59.937 63.158 0.00 0.00 33.45 5.03
848 853 4.615834 GCTAGGAGACGCTCGCCG 62.616 72.222 0.00 0.00 41.52 6.46
1569 1590 3.409570 TCCCGACTAGGAGTATTCATCG 58.590 50.000 0.00 0.00 45.00 3.84
1619 1657 0.877649 CACCTGGCATCTCGGAATCG 60.878 60.000 0.00 0.00 37.82 3.34
1836 2087 3.403613 TGCATCGATTTGTTCCGATTG 57.596 42.857 0.00 0.00 42.79 2.67
1964 2576 1.104577 TTGGTTGGTTTGTCCTCGGC 61.105 55.000 0.00 0.00 37.07 5.54
1989 2629 1.302993 TAACTTTCCACTGGCGCCC 60.303 57.895 26.77 6.44 0.00 6.13
2088 2876 3.684788 ACAGGCTAGAAATAAGTTGCGTG 59.315 43.478 0.00 0.00 40.59 5.34
2223 3860 9.720769 AAATAACTAAGGAGAAAATCTGACGAA 57.279 29.630 0.00 0.00 0.00 3.85
2237 3874 5.798015 TCTGACGAACATGAGTACTACTC 57.202 43.478 9.04 9.04 45.26 2.59
2293 3940 0.331954 GTCCCCCTTCCTTTTCCTCC 59.668 60.000 0.00 0.00 0.00 4.30
2424 4074 3.640967 TGCTGCTGATTTAAACCCAAACT 59.359 39.130 0.00 0.00 0.00 2.66
2429 4079 5.242838 TGCTGATTTAAACCCAAACTACCAG 59.757 40.000 0.00 0.00 0.00 4.00
2445 4095 0.442310 CCAGTACGTTGTCCAATGCG 59.558 55.000 0.00 0.00 0.00 4.73
2695 4826 3.827817 TTACTCTCCTCCACTCCAAGA 57.172 47.619 0.00 0.00 0.00 3.02
2700 4831 4.352298 ACTCTCCTCCACTCCAAGAATTTT 59.648 41.667 0.00 0.00 0.00 1.82
2701 4832 4.911390 TCTCCTCCACTCCAAGAATTTTC 58.089 43.478 0.00 0.00 0.00 2.29
2704 4835 3.192212 CCTCCACTCCAAGAATTTTCTGC 59.808 47.826 0.00 0.00 37.65 4.26
2709 5035 3.823304 ACTCCAAGAATTTTCTGCAGGAC 59.177 43.478 15.13 0.00 37.65 3.85
2716 5042 6.661304 AGAATTTTCTGCAGGACTCATTTT 57.339 33.333 15.13 0.00 35.89 1.82
2727 5053 7.765307 TGCAGGACTCATTTTTATCAGATTTC 58.235 34.615 0.00 0.00 0.00 2.17
3142 7443 3.713003 TCACACCCAGACAGACAGATAT 58.287 45.455 0.00 0.00 0.00 1.63
3189 7490 1.328069 CCGTTTAATATGTGGCGCGAA 59.672 47.619 12.10 0.00 0.00 4.70
3223 7724 4.202070 CCACCGGTACACATGTTTCTTTTT 60.202 41.667 6.87 0.00 0.00 1.94
3230 7731 6.475402 GGTACACATGTTTCTTTTTCCACTTG 59.525 38.462 0.00 0.00 0.00 3.16
3241 7746 1.289160 TTCCACTTGGAGGGATCAGG 58.711 55.000 0.00 0.00 46.36 3.86
3283 7788 4.787551 TGAGATACACCAAAACACCAGTT 58.212 39.130 0.00 0.00 40.40 3.16
3311 7816 0.590195 GTGACAGCCTTGCACTTCAG 59.410 55.000 0.00 0.00 32.32 3.02
3312 7817 1.168407 TGACAGCCTTGCACTTCAGC 61.168 55.000 0.00 0.00 0.00 4.26
3313 7818 1.860484 GACAGCCTTGCACTTCAGCC 61.860 60.000 0.00 0.00 0.00 4.85
3314 7819 1.900016 CAGCCTTGCACTTCAGCCA 60.900 57.895 0.00 0.00 0.00 4.75
3315 7820 1.602888 AGCCTTGCACTTCAGCCAG 60.603 57.895 0.00 0.00 0.00 4.85
3342 7848 1.296056 ATTCCAAACTTCCGACGGCG 61.296 55.000 9.66 1.94 37.24 6.46
3365 7871 0.716108 CGCGCTTGGTTCAAGTAGAG 59.284 55.000 5.56 3.15 42.77 2.43
3389 7896 0.930726 TTTTCAGGAACAGTGGGGGT 59.069 50.000 0.00 0.00 0.00 4.95
3392 7899 0.836400 TCAGGAACAGTGGGGGTCTC 60.836 60.000 0.00 0.00 0.00 3.36
3404 7911 3.808656 GGTCTCGGTCCGTCGTCC 61.809 72.222 11.88 7.42 0.00 4.79
3412 7919 1.354506 GTCCGTCGTCCACCTATCG 59.645 63.158 0.00 0.00 0.00 2.92
3427 7934 7.002276 TCCACCTATCGTAGACTAATGATCAA 58.998 38.462 0.00 0.00 42.51 2.57
3444 7951 3.848301 AACTGGCCGTGCATGCTGA 62.848 57.895 20.33 0.00 0.00 4.26
3481 7988 4.819630 AGAAACCGAATGAAAACACTAGCA 59.180 37.500 0.00 0.00 0.00 3.49
3634 8452 2.281234 CGTTTGAAATTTGCGTGCAACT 59.719 40.909 6.80 0.00 35.46 3.16
3635 8453 3.596319 GTTTGAAATTTGCGTGCAACTG 58.404 40.909 6.80 0.00 35.46 3.16
3637 8455 1.406898 TGAAATTTGCGTGCAACTGGA 59.593 42.857 6.80 0.00 35.46 3.86
3638 8456 2.035704 TGAAATTTGCGTGCAACTGGAT 59.964 40.909 6.80 0.00 35.46 3.41
3640 8458 0.244450 ATTTGCGTGCAACTGGATGG 59.756 50.000 6.80 0.00 35.46 3.51
3641 8459 1.804396 TTTGCGTGCAACTGGATGGG 61.804 55.000 6.80 0.00 35.46 4.00
3642 8460 2.672996 GCGTGCAACTGGATGGGT 60.673 61.111 0.00 0.00 31.75 4.51
3643 8461 2.690778 GCGTGCAACTGGATGGGTC 61.691 63.158 0.00 0.00 31.75 4.46
3644 8462 1.302431 CGTGCAACTGGATGGGTCA 60.302 57.895 0.00 0.00 31.75 4.02
3847 10807 3.448469 CCAAGGGTTGGTTGCCTTA 57.552 52.632 0.00 0.00 45.93 2.69
3855 10815 4.770531 AGGGTTGGTTGCCTTAGATAAAAC 59.229 41.667 0.00 0.00 0.00 2.43
3864 10824 7.361894 GTTGCCTTAGATAAAACGGTAAAACA 58.638 34.615 0.00 0.00 0.00 2.83
3866 10826 7.586747 TGCCTTAGATAAAACGGTAAAACAAG 58.413 34.615 0.00 0.00 0.00 3.16
3867 10827 7.025365 GCCTTAGATAAAACGGTAAAACAAGG 58.975 38.462 0.00 0.00 0.00 3.61
3868 10828 7.025365 CCTTAGATAAAACGGTAAAACAAGGC 58.975 38.462 0.00 0.00 0.00 4.35
3870 10830 1.842720 AAAACGGTAAAACAAGGCGC 58.157 45.000 0.00 0.00 0.00 6.53
3890 10940 8.131455 AGGCGCTATATCAACAAAATATATCG 57.869 34.615 7.64 0.00 35.69 2.92
3900 10950 5.678132 ACAAAATATATCGGGCCGTTTAC 57.322 39.130 27.32 0.00 0.00 2.01
3901 10951 5.124645 ACAAAATATATCGGGCCGTTTACA 58.875 37.500 27.32 6.22 0.00 2.41
3903 10953 4.612264 AATATATCGGGCCGTTTACAGT 57.388 40.909 27.32 4.93 0.00 3.55
3914 10964 4.609691 CCGTTTACAGTTCGGCATTTAT 57.390 40.909 0.00 0.00 37.90 1.40
3915 10965 4.339429 CCGTTTACAGTTCGGCATTTATG 58.661 43.478 0.00 0.00 37.90 1.90
3917 10967 5.063691 CCGTTTACAGTTCGGCATTTATGTA 59.936 40.000 0.00 0.00 37.90 2.29
3919 10969 7.042590 CCGTTTACAGTTCGGCATTTATGTATA 60.043 37.037 0.00 0.00 37.90 1.47
3920 10970 8.002107 CGTTTACAGTTCGGCATTTATGTATAG 58.998 37.037 0.00 0.00 0.00 1.31
3921 10971 8.823818 GTTTACAGTTCGGCATTTATGTATAGT 58.176 33.333 0.00 0.00 0.00 2.12
3922 10972 6.844696 ACAGTTCGGCATTTATGTATAGTG 57.155 37.500 0.00 0.00 0.00 2.74
3923 10973 6.346096 ACAGTTCGGCATTTATGTATAGTGT 58.654 36.000 0.00 0.00 0.00 3.55
4001 11140 3.859386 GGCAACAATTCGAATCCATGAAC 59.141 43.478 11.83 4.29 0.00 3.18
4016 11160 0.944386 TGAACCTGCGAAAGTTCTGC 59.056 50.000 6.45 2.33 42.32 4.26
4152 11325 2.104859 GCTCATCTGCAGCTTCGCA 61.105 57.895 9.47 0.00 40.32 5.10
4236 11409 3.934391 CTCCAAGTCCGTGACCGCC 62.934 68.421 1.06 0.00 32.18 6.13
4530 11703 2.743928 CAGCTTGACACGGAGGCC 60.744 66.667 0.00 0.00 0.00 5.19
4825 12033 2.886523 CCACACAAAGCTGATGAGGAAA 59.113 45.455 6.76 0.00 0.00 3.13
4828 12036 5.359009 CCACACAAAGCTGATGAGGAAATAT 59.641 40.000 6.76 0.00 0.00 1.28
5087 12316 4.269183 TCTGCAAGAAAAACTGACCAGAA 58.731 39.130 3.76 0.00 42.31 3.02
5222 12454 0.037419 TGAGCATGTCGCAAGCAGTA 60.037 50.000 9.13 0.00 46.13 2.74
6137 13404 4.483950 TCTCCACCAAAAGAGAGAGAGAA 58.516 43.478 0.00 0.00 34.23 2.87
6186 13465 1.585521 GGTCGTAGTCATCCACGCG 60.586 63.158 3.53 3.53 38.05 6.01
6220 13510 4.549458 ACAATAATTATCAGCCGCAATGC 58.451 39.130 0.00 0.00 0.00 3.56
6266 13560 1.726853 ATGCGTGCTAGTTCTGGAAC 58.273 50.000 5.43 5.43 41.45 3.62
6286 13580 7.747690 TGGAACCCTATAAACTTTGACACTTA 58.252 34.615 0.00 0.00 0.00 2.24
6448 13748 3.763097 TTCTTATGGCTTCGCAACATG 57.237 42.857 0.00 0.00 0.00 3.21
6550 13854 5.593968 TGCCGTATACATTACAATCGACTT 58.406 37.500 3.32 0.00 0.00 3.01
6623 13927 2.506472 CTAGGCGCCTTCCTTCCC 59.494 66.667 37.74 0.00 37.66 3.97
6902 14206 2.514824 GCCTTCGCCATCCTCCAC 60.515 66.667 0.00 0.00 0.00 4.02
6903 14207 2.190578 CCTTCGCCATCCTCCACC 59.809 66.667 0.00 0.00 0.00 4.61
6904 14208 2.669133 CCTTCGCCATCCTCCACCA 61.669 63.158 0.00 0.00 0.00 4.17
6913 14217 3.174987 CCTCCACCACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
7002 14331 1.535860 GCAGCGAGAGAGAAAGGCTAG 60.536 57.143 0.00 0.00 31.72 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.450807 GCATAATGATCGTTAAGTTTTATTGCT 57.549 29.630 11.33 0.00 0.00 3.91
25 26 9.450807 AGCATAATGATCGTTAAGTTTTATTGC 57.549 29.630 11.33 12.83 0.00 3.56
30 31 9.174166 ACCTTAGCATAATGATCGTTAAGTTTT 57.826 29.630 11.33 1.52 0.00 2.43
31 32 8.732746 ACCTTAGCATAATGATCGTTAAGTTT 57.267 30.769 11.33 3.63 0.00 2.66
32 33 9.826574 TTACCTTAGCATAATGATCGTTAAGTT 57.173 29.630 11.33 7.82 0.00 2.66
33 34 9.257651 GTTACCTTAGCATAATGATCGTTAAGT 57.742 33.333 11.33 2.50 0.00 2.24
34 35 9.256477 TGTTACCTTAGCATAATGATCGTTAAG 57.744 33.333 11.33 8.35 0.00 1.85
35 36 9.256477 CTGTTACCTTAGCATAATGATCGTTAA 57.744 33.333 11.33 0.00 0.00 2.01
36 37 8.635328 TCTGTTACCTTAGCATAATGATCGTTA 58.365 33.333 9.78 9.78 0.00 3.18
37 38 7.497595 TCTGTTACCTTAGCATAATGATCGTT 58.502 34.615 5.33 5.33 0.00 3.85
38 39 7.050970 TCTGTTACCTTAGCATAATGATCGT 57.949 36.000 0.00 0.00 0.00 3.73
39 40 7.063898 CCATCTGTTACCTTAGCATAATGATCG 59.936 40.741 0.00 0.00 0.00 3.69
40 41 7.335422 CCCATCTGTTACCTTAGCATAATGATC 59.665 40.741 0.00 0.00 0.00 2.92
41 42 7.170965 CCCATCTGTTACCTTAGCATAATGAT 58.829 38.462 0.00 0.00 0.00 2.45
42 43 6.101150 ACCCATCTGTTACCTTAGCATAATGA 59.899 38.462 0.00 0.00 0.00 2.57
43 44 6.299141 ACCCATCTGTTACCTTAGCATAATG 58.701 40.000 0.00 0.00 0.00 1.90
44 45 6.330250 AGACCCATCTGTTACCTTAGCATAAT 59.670 38.462 0.00 0.00 32.29 1.28
45 46 5.665812 AGACCCATCTGTTACCTTAGCATAA 59.334 40.000 0.00 0.00 32.29 1.90
46 47 5.216622 AGACCCATCTGTTACCTTAGCATA 58.783 41.667 0.00 0.00 32.29 3.14
47 48 4.040755 AGACCCATCTGTTACCTTAGCAT 58.959 43.478 0.00 0.00 32.29 3.79
48 49 3.450904 AGACCCATCTGTTACCTTAGCA 58.549 45.455 0.00 0.00 32.29 3.49
49 50 4.192317 CAAGACCCATCTGTTACCTTAGC 58.808 47.826 0.00 0.00 34.48 3.09
50 51 5.420409 GACAAGACCCATCTGTTACCTTAG 58.580 45.833 0.00 0.00 34.48 2.18
51 52 4.224370 GGACAAGACCCATCTGTTACCTTA 59.776 45.833 0.00 0.00 34.48 2.69
52 53 3.009143 GGACAAGACCCATCTGTTACCTT 59.991 47.826 0.00 0.00 34.48 3.50
53 54 2.572104 GGACAAGACCCATCTGTTACCT 59.428 50.000 0.00 0.00 34.48 3.08
54 55 2.304761 TGGACAAGACCCATCTGTTACC 59.695 50.000 0.00 0.00 34.48 2.85
55 56 3.695830 TGGACAAGACCCATCTGTTAC 57.304 47.619 0.00 0.00 34.48 2.50
62 63 2.577563 TGATGTGATGGACAAGACCCAT 59.422 45.455 0.00 0.00 46.40 4.00
63 64 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
64 65 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
65 66 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
66 67 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
67 68 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
68 69 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
69 70 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
70 71 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
71 72 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
72 73 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
80 81 7.039152 ACGAGATCACATCATTAGGAGAATGAT 60.039 37.037 6.90 6.90 45.40 2.45
81 82 6.266330 ACGAGATCACATCATTAGGAGAATGA 59.734 38.462 2.66 2.66 40.50 2.57
82 83 6.453943 ACGAGATCACATCATTAGGAGAATG 58.546 40.000 0.00 0.00 0.00 2.67
83 84 6.662865 ACGAGATCACATCATTAGGAGAAT 57.337 37.500 0.00 0.00 0.00 2.40
84 85 6.096846 TGAACGAGATCACATCATTAGGAGAA 59.903 38.462 0.00 0.00 0.00 2.87
85 86 5.594317 TGAACGAGATCACATCATTAGGAGA 59.406 40.000 0.00 0.00 0.00 3.71
86 87 5.836347 TGAACGAGATCACATCATTAGGAG 58.164 41.667 0.00 0.00 0.00 3.69
87 88 5.852282 TGAACGAGATCACATCATTAGGA 57.148 39.130 0.00 0.00 0.00 2.94
88 89 6.218746 TGATGAACGAGATCACATCATTAGG 58.781 40.000 0.00 0.00 42.31 2.69
89 90 7.704789 TTGATGAACGAGATCACATCATTAG 57.295 36.000 0.00 0.00 45.05 1.73
90 91 8.553696 CATTTGATGAACGAGATCACATCATTA 58.446 33.333 0.00 7.75 45.05 1.90
91 92 6.990341 TTTGATGAACGAGATCACATCATT 57.010 33.333 0.00 0.00 45.05 2.57
92 93 6.764560 TCATTTGATGAACGAGATCACATCAT 59.235 34.615 0.00 11.72 45.05 2.45
93 94 6.036408 GTCATTTGATGAACGAGATCACATCA 59.964 38.462 0.00 0.00 44.40 3.07
94 95 6.036408 TGTCATTTGATGAACGAGATCACATC 59.964 38.462 0.00 0.00 41.69 3.06
95 96 5.876460 TGTCATTTGATGAACGAGATCACAT 59.124 36.000 0.00 0.00 41.69 3.21
96 97 5.237048 TGTCATTTGATGAACGAGATCACA 58.763 37.500 0.00 0.00 41.69 3.58
97 98 5.784750 TGTCATTTGATGAACGAGATCAC 57.215 39.130 0.00 0.00 41.69 3.06
98 99 5.700373 TGTTGTCATTTGATGAACGAGATCA 59.300 36.000 0.00 0.00 41.69 2.92
99 100 6.017933 GTGTTGTCATTTGATGAACGAGATC 58.982 40.000 0.00 0.00 41.69 2.75
100 101 5.469760 TGTGTTGTCATTTGATGAACGAGAT 59.530 36.000 0.00 0.00 41.69 2.75
101 102 4.813697 TGTGTTGTCATTTGATGAACGAGA 59.186 37.500 0.00 0.00 41.69 4.04
102 103 5.094429 TGTGTTGTCATTTGATGAACGAG 57.906 39.130 0.00 0.00 41.69 4.18
103 104 5.008514 ACATGTGTTGTCATTTGATGAACGA 59.991 36.000 0.00 0.00 41.69 3.85
104 105 5.214417 ACATGTGTTGTCATTTGATGAACG 58.786 37.500 0.00 0.00 41.69 3.95
117 118 7.719633 AGTTTTCTAACCATAGACATGTGTTGT 59.280 33.333 1.15 0.00 37.88 3.32
118 119 8.099364 AGTTTTCTAACCATAGACATGTGTTG 57.901 34.615 1.15 0.54 37.88 3.33
119 120 8.691661 AAGTTTTCTAACCATAGACATGTGTT 57.308 30.769 1.15 3.14 37.88 3.32
120 121 9.787435 TTAAGTTTTCTAACCATAGACATGTGT 57.213 29.630 1.15 0.22 37.88 3.72
122 123 9.227777 GGTTAAGTTTTCTAACCATAGACATGT 57.772 33.333 0.00 0.00 41.99 3.21
123 124 9.226606 TGGTTAAGTTTTCTAACCATAGACATG 57.773 33.333 9.79 0.00 45.67 3.21
136 137 9.893305 CGTTAATCAAAGATGGTTAAGTTTTCT 57.107 29.630 0.00 0.00 41.55 2.52
137 138 9.887406 TCGTTAATCAAAGATGGTTAAGTTTTC 57.113 29.630 0.00 0.00 41.55 2.29
138 139 9.893305 CTCGTTAATCAAAGATGGTTAAGTTTT 57.107 29.630 0.00 0.00 41.55 2.43
139 140 8.021396 GCTCGTTAATCAAAGATGGTTAAGTTT 58.979 33.333 0.00 0.00 41.55 2.66
140 141 7.390718 AGCTCGTTAATCAAAGATGGTTAAGTT 59.609 33.333 0.00 0.00 41.55 2.66
141 142 6.879458 AGCTCGTTAATCAAAGATGGTTAAGT 59.121 34.615 0.00 0.00 41.55 2.24
142 143 7.308782 AGCTCGTTAATCAAAGATGGTTAAG 57.691 36.000 0.00 0.00 41.55 1.85
143 144 8.038944 ACTAGCTCGTTAATCAAAGATGGTTAA 58.961 33.333 0.00 0.00 39.28 2.01
144 145 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
145 146 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
146 147 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
147 148 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
148 149 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
149 150 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
150 151 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
151 152 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
152 153 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
153 154 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
154 155 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
155 156 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
156 157 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
157 158 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
158 159 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
159 160 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
160 161 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
161 162 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
162 163 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
163 164 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
164 165 5.182380 CCTAGTATGCCTCTACTTGACTAGC 59.818 48.000 0.00 0.00 35.60 3.42
165 166 5.708230 CCCTAGTATGCCTCTACTTGACTAG 59.292 48.000 0.00 0.00 36.32 2.57
166 167 5.371769 TCCCTAGTATGCCTCTACTTGACTA 59.628 44.000 0.00 0.00 33.96 2.59
167 168 4.168283 TCCCTAGTATGCCTCTACTTGACT 59.832 45.833 0.00 0.00 33.96 3.41
168 169 4.278919 GTCCCTAGTATGCCTCTACTTGAC 59.721 50.000 0.00 0.00 33.96 3.18
169 170 4.079385 TGTCCCTAGTATGCCTCTACTTGA 60.079 45.833 0.00 0.00 33.96 3.02
170 171 4.038162 GTGTCCCTAGTATGCCTCTACTTG 59.962 50.000 0.00 0.00 33.96 3.16
171 172 4.079096 AGTGTCCCTAGTATGCCTCTACTT 60.079 45.833 0.00 0.00 33.96 2.24
172 173 3.464080 AGTGTCCCTAGTATGCCTCTACT 59.536 47.826 0.00 0.00 36.04 2.57
173 174 3.834938 AGTGTCCCTAGTATGCCTCTAC 58.165 50.000 0.00 0.00 0.00 2.59
174 175 4.537945 AAGTGTCCCTAGTATGCCTCTA 57.462 45.455 0.00 0.00 0.00 2.43
175 176 3.406512 AAGTGTCCCTAGTATGCCTCT 57.593 47.619 0.00 0.00 0.00 3.69
176 177 3.197983 ACAAAGTGTCCCTAGTATGCCTC 59.802 47.826 0.00 0.00 0.00 4.70
177 178 3.182152 ACAAAGTGTCCCTAGTATGCCT 58.818 45.455 0.00 0.00 0.00 4.75
178 179 3.629142 ACAAAGTGTCCCTAGTATGCC 57.371 47.619 0.00 0.00 0.00 4.40
179 180 5.240844 ACAAAACAAAGTGTCCCTAGTATGC 59.759 40.000 0.00 0.00 0.00 3.14
180 181 6.710744 AGACAAAACAAAGTGTCCCTAGTATG 59.289 38.462 0.36 0.00 44.30 2.39
181 182 6.838382 AGACAAAACAAAGTGTCCCTAGTAT 58.162 36.000 0.36 0.00 44.30 2.12
182 183 6.243216 AGACAAAACAAAGTGTCCCTAGTA 57.757 37.500 0.36 0.00 44.30 1.82
183 184 5.112129 AGACAAAACAAAGTGTCCCTAGT 57.888 39.130 0.36 0.00 44.30 2.57
184 185 6.710744 ACATAGACAAAACAAAGTGTCCCTAG 59.289 38.462 0.36 0.00 44.30 3.02
185 186 6.597562 ACATAGACAAAACAAAGTGTCCCTA 58.402 36.000 0.36 0.00 44.30 3.53
186 187 5.445964 ACATAGACAAAACAAAGTGTCCCT 58.554 37.500 0.36 0.00 44.30 4.20
187 188 5.767816 ACATAGACAAAACAAAGTGTCCC 57.232 39.130 0.36 0.00 44.30 4.46
188 189 8.564574 TGAATACATAGACAAAACAAAGTGTCC 58.435 33.333 0.36 0.00 44.30 4.02
189 190 9.382244 GTGAATACATAGACAAAACAAAGTGTC 57.618 33.333 0.00 0.00 43.70 3.67
190 191 8.898761 TGTGAATACATAGACAAAACAAAGTGT 58.101 29.630 0.00 0.00 0.00 3.55
191 192 9.169468 GTGTGAATACATAGACAAAACAAAGTG 57.831 33.333 0.00 0.00 39.39 3.16
192 193 8.898761 TGTGTGAATACATAGACAAAACAAAGT 58.101 29.630 0.00 0.00 39.39 2.66
193 194 9.897744 ATGTGTGAATACATAGACAAAACAAAG 57.102 29.630 0.00 0.00 39.40 2.77
194 195 9.676195 CATGTGTGAATACATAGACAAAACAAA 57.324 29.630 0.00 0.00 39.17 2.83
195 196 8.845227 ACATGTGTGAATACATAGACAAAACAA 58.155 29.630 0.00 0.00 39.17 2.83
196 197 8.389779 ACATGTGTGAATACATAGACAAAACA 57.610 30.769 0.00 0.00 39.17 2.83
199 200 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
200 201 9.883142 TTGATACATGTGTGAATACATAGACAA 57.117 29.630 9.11 0.00 39.17 3.18
201 202 9.533253 CTTGATACATGTGTGAATACATAGACA 57.467 33.333 9.11 0.00 39.17 3.41
202 203 9.534565 ACTTGATACATGTGTGAATACATAGAC 57.465 33.333 9.11 0.00 39.17 2.59
206 207 8.677300 GGAAACTTGATACATGTGTGAATACAT 58.323 33.333 9.11 0.00 41.77 2.29
207 208 7.148490 CGGAAACTTGATACATGTGTGAATACA 60.148 37.037 9.11 0.00 34.63 2.29
208 209 7.180079 CGGAAACTTGATACATGTGTGAATAC 58.820 38.462 9.11 0.00 0.00 1.89
209 210 6.315144 CCGGAAACTTGATACATGTGTGAATA 59.685 38.462 9.11 0.00 0.00 1.75
210 211 5.123820 CCGGAAACTTGATACATGTGTGAAT 59.876 40.000 9.11 0.00 0.00 2.57
211 212 4.454161 CCGGAAACTTGATACATGTGTGAA 59.546 41.667 9.11 0.70 0.00 3.18
212 213 4.000325 CCGGAAACTTGATACATGTGTGA 59.000 43.478 9.11 0.00 0.00 3.58
213 214 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
214 215 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
215 216 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
216 217 7.825270 TGTATTAACCGGAAACTTGATACATGT 59.175 33.333 9.46 2.69 28.53 3.21
217 218 8.203937 TGTATTAACCGGAAACTTGATACATG 57.796 34.615 9.46 0.00 28.53 3.21
218 219 8.795842 TTGTATTAACCGGAAACTTGATACAT 57.204 30.769 9.46 0.00 31.55 2.29
219 220 8.795842 ATTGTATTAACCGGAAACTTGATACA 57.204 30.769 9.46 11.96 30.33 2.29
220 221 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
221 222 9.675464 AGAATTGTATTAACCGGAAACTTGATA 57.325 29.630 9.46 0.00 0.00 2.15
222 223 8.575649 AGAATTGTATTAACCGGAAACTTGAT 57.424 30.769 9.46 0.00 0.00 2.57
223 224 7.989416 AGAATTGTATTAACCGGAAACTTGA 57.011 32.000 9.46 0.00 0.00 3.02
224 225 7.908601 GCTAGAATTGTATTAACCGGAAACTTG 59.091 37.037 9.46 0.00 0.00 3.16
225 226 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
226 227 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
227 228 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
228 229 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
229 230 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
230 231 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
231 232 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
288 289 9.206870 CTGAAGGCAATAATAATGTTGTTGTTT 57.793 29.630 1.85 0.00 30.94 2.83
289 290 8.367156 ACTGAAGGCAATAATAATGTTGTTGTT 58.633 29.630 1.85 0.00 30.94 2.83
290 291 7.814107 CACTGAAGGCAATAATAATGTTGTTGT 59.186 33.333 1.85 0.00 30.94 3.32
291 292 7.814107 ACACTGAAGGCAATAATAATGTTGTTG 59.186 33.333 0.00 0.00 30.94 3.33
292 293 7.895759 ACACTGAAGGCAATAATAATGTTGTT 58.104 30.769 0.00 0.00 30.94 2.83
293 294 7.466746 ACACTGAAGGCAATAATAATGTTGT 57.533 32.000 0.00 0.00 30.94 3.32
301 302 9.646522 AAGGAAATATACACTGAAGGCAATAAT 57.353 29.630 0.00 0.00 0.00 1.28
302 303 9.120538 GAAGGAAATATACACTGAAGGCAATAA 57.879 33.333 0.00 0.00 0.00 1.40
303 304 8.271458 TGAAGGAAATATACACTGAAGGCAATA 58.729 33.333 0.00 0.00 0.00 1.90
304 305 7.118723 TGAAGGAAATATACACTGAAGGCAAT 58.881 34.615 0.00 0.00 0.00 3.56
305 306 6.480763 TGAAGGAAATATACACTGAAGGCAA 58.519 36.000 0.00 0.00 0.00 4.52
306 307 6.061022 TGAAGGAAATATACACTGAAGGCA 57.939 37.500 0.00 0.00 0.00 4.75
307 308 7.573968 AATGAAGGAAATATACACTGAAGGC 57.426 36.000 0.00 0.00 0.00 4.35
320 321 9.045223 GTTGCTTAAGACAAAAATGAAGGAAAT 57.955 29.630 6.67 0.00 0.00 2.17
321 322 8.037758 TGTTGCTTAAGACAAAAATGAAGGAAA 58.962 29.630 6.67 0.00 0.00 3.13
322 323 7.551585 TGTTGCTTAAGACAAAAATGAAGGAA 58.448 30.769 6.67 0.00 0.00 3.36
323 324 7.106439 TGTTGCTTAAGACAAAAATGAAGGA 57.894 32.000 6.67 0.00 0.00 3.36
324 325 7.439056 ACATGTTGCTTAAGACAAAAATGAAGG 59.561 33.333 24.18 11.71 32.08 3.46
328 329 9.771915 AAAAACATGTTGCTTAAGACAAAAATG 57.228 25.926 12.82 20.33 33.10 2.32
357 358 6.429692 TCTGTTTCAACAAGAGTCTTGTCAAA 59.570 34.615 33.02 28.55 38.66 2.69
358 359 5.937540 TCTGTTTCAACAAGAGTCTTGTCAA 59.062 36.000 33.02 25.47 38.66 3.18
359 360 5.487433 TCTGTTTCAACAAGAGTCTTGTCA 58.513 37.500 33.02 24.85 38.66 3.58
360 361 6.610741 ATCTGTTTCAACAAGAGTCTTGTC 57.389 37.500 33.02 22.14 38.66 3.18
361 362 6.238211 CGAATCTGTTTCAACAAGAGTCTTGT 60.238 38.462 28.97 28.97 38.66 3.16
362 363 6.018751 TCGAATCTGTTTCAACAAGAGTCTTG 60.019 38.462 27.66 27.66 38.66 3.02
428 429 9.577110 CGGGTCTAGTTATATAAATTATTCGCA 57.423 33.333 0.07 0.00 0.00 5.10
429 430 9.578439 ACGGGTCTAGTTATATAAATTATTCGC 57.422 33.333 0.07 0.00 0.00 4.70
440 441 5.347620 TTGCAACACGGGTCTAGTTATAT 57.652 39.130 0.00 0.00 0.00 0.86
442 443 3.688694 TTGCAACACGGGTCTAGTTAT 57.311 42.857 0.00 0.00 0.00 1.89
477 481 5.414144 TGATCCGTCATCTTTGCAACAAATA 59.586 36.000 0.00 0.00 31.92 1.40
524 528 3.950397 TGACCATGGGATGAAGTTGTAC 58.050 45.455 18.09 0.00 0.00 2.90
533 537 1.396653 GCCTCTTTGACCATGGGATG 58.603 55.000 18.09 4.30 0.00 3.51
538 542 1.361668 CGTCCGCCTCTTTGACCATG 61.362 60.000 0.00 0.00 0.00 3.66
555 559 6.416514 GCGACGGATAAAATTAAAAGATCGT 58.583 36.000 0.00 0.00 0.00 3.73
557 561 5.336209 GCGCGACGGATAAAATTAAAAGATC 59.664 40.000 12.10 0.00 0.00 2.75
563 567 2.631663 CGCGCGACGGATAAAATTAA 57.368 45.000 28.94 0.00 38.44 1.40
579 583 1.281656 AAAAAGAAAGGGCGACGCG 59.718 52.632 14.61 3.53 0.00 6.01
709 714 9.481340 GACAGGAATCTTGCTTTTCTTAAAAAT 57.519 29.630 0.00 0.00 34.00 1.82
717 722 5.179555 ACGTAAGACAGGAATCTTGCTTTTC 59.820 40.000 7.17 0.00 39.33 2.29
792 797 1.500512 TTGTTTGGGACGTAGCGTGC 61.501 55.000 4.65 4.65 46.85 5.34
820 825 2.464865 GTCTCCTAGCTGTGCGTATTG 58.535 52.381 0.00 0.00 0.00 1.90
927 932 2.510238 CGTGCTCTGCTGTAGCCC 60.510 66.667 0.80 1.76 39.30 5.19
1569 1590 2.035530 AGAGTAGCAATGAAGCAGCC 57.964 50.000 0.00 0.00 36.85 4.85
1619 1657 1.001406 CCCGAGCACCTAGATCCATTC 59.999 57.143 0.00 0.00 0.00 2.67
1836 2087 2.691409 TCTAGTAGCATGCCAACCAC 57.309 50.000 15.66 5.01 0.00 4.16
1964 2576 2.293399 GCCAGTGGAAAGTTACAACCAG 59.707 50.000 15.20 0.00 32.89 4.00
1989 2629 1.551430 TGTTGTACCCCACGTAGGATG 59.449 52.381 10.62 2.35 41.22 3.51
2088 2876 6.400727 GGTGACGAGTGATAATACAACAACAC 60.401 42.308 0.00 0.00 0.00 3.32
2223 3860 3.566322 GCGAGATGGAGTAGTACTCATGT 59.434 47.826 27.41 18.00 46.79 3.21
2237 3874 0.524392 GTCAGTGTCTCGCGAGATGG 60.524 60.000 38.52 26.56 39.97 3.51
2293 3940 5.221322 TGTCGAGAGGGACAATGATAATCAG 60.221 44.000 0.00 0.00 43.55 2.90
2424 4074 2.690786 GCATTGGACAACGTACTGGTA 58.309 47.619 0.00 0.00 0.00 3.25
2429 4079 1.796459 AGAACGCATTGGACAACGTAC 59.204 47.619 0.00 0.00 37.87 3.67
2695 4826 8.587608 TGATAAAAATGAGTCCTGCAGAAAATT 58.412 29.630 17.39 4.86 0.00 1.82
2700 4831 6.053632 TCTGATAAAAATGAGTCCTGCAGA 57.946 37.500 17.39 0.00 0.00 4.26
2701 4832 6.939132 ATCTGATAAAAATGAGTCCTGCAG 57.061 37.500 6.78 6.78 0.00 4.41
2727 5053 6.430962 TGAGAGGATGGAAATTCTCCTATG 57.569 41.667 3.56 0.00 45.64 2.23
2734 5060 4.604156 AGGGTTTGAGAGGATGGAAATTC 58.396 43.478 0.00 0.00 0.00 2.17
2965 5638 2.895404 GGGCCCGACTAGTGTATTCATA 59.105 50.000 5.69 0.00 0.00 2.15
3189 7490 2.741878 TACCGGTGGAGGCAAGAGGT 62.742 60.000 19.93 0.00 33.69 3.85
3223 7724 1.274703 GCCTGATCCCTCCAAGTGGA 61.275 60.000 0.00 0.00 43.08 4.02
3230 7731 1.138863 ATGATGGGCCTGATCCCTCC 61.139 60.000 4.53 0.00 46.67 4.30
3247 7752 6.820152 TGGTGTATCTCAGTTCTGATGAAATG 59.180 38.462 2.89 0.56 46.06 2.32
3312 7817 0.179129 GTTTGGAATGATGCCGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
3313 7818 0.813184 AGTTTGGAATGATGCCGCTG 59.187 50.000 0.00 0.00 0.00 5.18
3314 7819 1.474077 GAAGTTTGGAATGATGCCGCT 59.526 47.619 0.00 0.00 0.00 5.52
3315 7820 1.469767 GGAAGTTTGGAATGATGCCGC 60.470 52.381 0.00 0.00 0.00 6.53
3342 7848 2.966309 CTTGAACCAAGCGCGGGAC 61.966 63.158 24.96 17.84 34.63 4.46
3365 7871 4.010349 CCCCACTGTTCCTGAAAACTATC 58.990 47.826 0.00 0.00 0.00 2.08
3389 7896 3.052082 GTGGACGACGGACCGAGA 61.052 66.667 23.38 0.00 0.00 4.04
3392 7899 2.056481 GATAGGTGGACGACGGACCG 62.056 65.000 13.61 13.61 34.72 4.79
3404 7911 7.805542 CAGTTGATCATTAGTCTACGATAGGTG 59.194 40.741 0.00 0.00 43.77 4.00
3412 7919 4.051922 CGGCCAGTTGATCATTAGTCTAC 58.948 47.826 2.24 0.00 0.00 2.59
3427 7934 4.334118 TCAGCATGCACGGCCAGT 62.334 61.111 21.98 0.00 34.76 4.00
3444 7951 2.031683 CGGTTTCTTCGAGCTGTTTTGT 59.968 45.455 0.00 0.00 0.00 2.83
3634 8452 1.837252 ATCCATCCATGACCCATCCA 58.163 50.000 0.00 0.00 0.00 3.41
3635 8453 2.986534 AATCCATCCATGACCCATCC 57.013 50.000 0.00 0.00 0.00 3.51
3637 8455 3.723681 ACACTAATCCATCCATGACCCAT 59.276 43.478 0.00 0.00 0.00 4.00
3638 8456 3.122480 ACACTAATCCATCCATGACCCA 58.878 45.455 0.00 0.00 0.00 4.51
3640 8458 4.526970 ACAACACTAATCCATCCATGACC 58.473 43.478 0.00 0.00 0.00 4.02
3641 8459 7.807977 AATACAACACTAATCCATCCATGAC 57.192 36.000 0.00 0.00 0.00 3.06
3642 8460 8.821686 AAAATACAACACTAATCCATCCATGA 57.178 30.769 0.00 0.00 0.00 3.07
3643 8461 7.857389 CGAAAATACAACACTAATCCATCCATG 59.143 37.037 0.00 0.00 0.00 3.66
3644 8462 7.556275 ACGAAAATACAACACTAATCCATCCAT 59.444 33.333 0.00 0.00 0.00 3.41
3847 10807 4.614306 GCGCCTTGTTTTACCGTTTTATCT 60.614 41.667 0.00 0.00 0.00 1.98
3855 10815 3.805422 TGATATAGCGCCTTGTTTTACCG 59.195 43.478 2.29 0.00 0.00 4.02
3864 10824 8.604035 CGATATATTTTGTTGATATAGCGCCTT 58.396 33.333 2.29 0.00 41.71 4.35
3866 10826 7.345192 CCGATATATTTTGTTGATATAGCGCC 58.655 38.462 2.29 0.00 44.30 6.53
3867 10827 7.345192 CCCGATATATTTTGTTGATATAGCGC 58.655 38.462 0.00 0.00 44.30 5.92
3868 10828 7.345192 GCCCGATATATTTTGTTGATATAGCG 58.655 38.462 12.29 12.29 44.80 4.26
3870 10830 7.494625 ACGGCCCGATATATTTTGTTGATATAG 59.505 37.037 11.71 0.00 0.00 1.31
3890 10940 3.569902 CCGAACTGTAAACGGCCC 58.430 61.111 0.00 0.00 40.19 5.80
3900 10950 6.478673 TGACACTATACATAAATGCCGAACTG 59.521 38.462 0.00 0.00 0.00 3.16
3901 10951 6.578944 TGACACTATACATAAATGCCGAACT 58.421 36.000 0.00 0.00 0.00 3.01
3903 10953 6.073276 GCATGACACTATACATAAATGCCGAA 60.073 38.462 0.00 0.00 34.51 4.30
3909 10959 8.922931 TTGATGGCATGACACTATACATAAAT 57.077 30.769 1.45 0.00 0.00 1.40
3910 10960 8.785946 CATTGATGGCATGACACTATACATAAA 58.214 33.333 1.45 0.00 0.00 1.40
3914 10964 5.065235 CCATTGATGGCATGACACTATACA 58.935 41.667 1.45 0.00 41.75 2.29
3915 10965 5.618056 CCATTGATGGCATGACACTATAC 57.382 43.478 1.45 0.00 41.75 1.47
4001 11140 1.461127 GTAGTGCAGAACTTTCGCAGG 59.539 52.381 8.19 0.00 40.56 4.85
4016 11160 4.697514 AGTGCCAATGCTATGTAGTAGTG 58.302 43.478 0.00 0.00 38.71 2.74
4530 11703 0.465705 TCCTTCCGAGCCTTGCATAG 59.534 55.000 0.00 0.00 0.00 2.23
4825 12033 2.288213 CCACGCTGGTATGTCGTCATAT 60.288 50.000 5.67 0.00 38.56 1.78
4828 12036 1.214325 CCACGCTGGTATGTCGTCA 59.786 57.895 0.00 0.00 33.84 4.35
4873 12082 2.503356 GAGGATGAGGGACACTGTCATT 59.497 50.000 11.34 0.00 33.68 2.57
5087 12316 7.039714 GGAGTCTGTCCATCAAATTTTAAAGGT 60.040 37.037 0.00 0.00 46.10 3.50
5216 12448 2.744760 TCTGAGAGGAATGCTACTGCT 58.255 47.619 0.00 0.00 40.48 4.24
5222 12454 3.946558 GCTTGAAATCTGAGAGGAATGCT 59.053 43.478 0.00 0.00 0.00 3.79
5372 12624 0.249114 TGGATAAATACAGCGCGCGA 60.249 50.000 37.18 13.84 0.00 5.87
6137 13404 3.045601 ACACGCATCTAGAAGCTTTGT 57.954 42.857 17.18 15.82 0.00 2.83
6266 13560 8.801882 TGGAATAAGTGTCAAAGTTTATAGGG 57.198 34.615 0.00 0.00 0.00 3.53
6286 13580 8.422577 ACTGCTCTAAAAGGTATTTTTGGAAT 57.577 30.769 1.21 0.00 43.08 3.01
6362 13660 5.587443 TGCTATCACTGAATTCTGTTGATGG 59.413 40.000 24.13 22.89 0.00 3.51
6372 13670 6.308766 GCGTTTGAATTTGCTATCACTGAATT 59.691 34.615 0.00 0.00 0.00 2.17
6448 13748 8.344831 TCTATGTATGCACTGCAAATCATAAAC 58.655 33.333 8.03 0.00 43.62 2.01
6857 14161 4.147449 CTGATCTGGGCGACGGCA 62.147 66.667 23.66 8.43 42.47 5.69
6901 14205 3.556306 CGAGGTGGTGGTGGTGGT 61.556 66.667 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.