Multiple sequence alignment - TraesCS6D01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G248700 chr6D 100.000 6682 0 0 1 6682 352148385 352155066 0.000000e+00 12340.0
1 TraesCS6D01G248700 chr6D 80.634 2019 316 56 3731 5697 352354571 352356566 0.000000e+00 1493.0
2 TraesCS6D01G248700 chr6D 98.355 547 8 1 6136 6682 16138294 16137749 0.000000e+00 959.0
3 TraesCS6D01G248700 chr6D 99.064 534 4 1 6149 6682 16133542 16133010 0.000000e+00 957.0
4 TraesCS6D01G248700 chr6D 98.692 535 5 1 6148 6682 6940220 6939688 0.000000e+00 948.0
5 TraesCS6D01G248700 chr6D 86.587 753 61 21 998 1722 352351533 352352273 0.000000e+00 795.0
6 TraesCS6D01G248700 chr6D 79.730 222 40 5 477 695 462636728 462636947 8.970000e-34 156.0
7 TraesCS6D01G248700 chr6A 94.398 2517 102 22 3648 6148 490838393 490835900 0.000000e+00 3831.0
8 TraesCS6D01G248700 chr6A 84.955 1901 151 48 1 1793 490842010 490840137 0.000000e+00 1801.0
9 TraesCS6D01G248700 chr6A 80.936 2030 314 51 3723 5697 490496562 490494551 0.000000e+00 1537.0
10 TraesCS6D01G248700 chr6A 90.170 529 43 4 998 1526 490500173 490499654 0.000000e+00 680.0
11 TraesCS6D01G248700 chr6A 83.971 680 72 21 1988 2665 490840127 490839483 9.520000e-173 617.0
12 TraesCS6D01G248700 chr6A 84.236 203 26 5 1596 1795 490499558 490499359 6.840000e-45 193.0
13 TraesCS6D01G248700 chr6B 97.084 2195 56 3 3694 5880 526738603 526736409 0.000000e+00 3692.0
14 TraesCS6D01G248700 chr6B 80.268 2017 327 55 3731 5697 526721579 526719584 0.000000e+00 1454.0
15 TraesCS6D01G248700 chr6B 90.298 1041 32 12 820 1827 526742379 526741375 0.000000e+00 1299.0
16 TraesCS6D01G248700 chr6B 87.952 996 112 4 2501 3495 526739807 526738819 0.000000e+00 1168.0
17 TraesCS6D01G248700 chr6B 86.490 755 66 19 998 1725 526725089 526724344 0.000000e+00 797.0
18 TraesCS6D01G248700 chr6B 88.026 309 19 7 2202 2510 526740926 526740636 3.830000e-92 350.0
19 TraesCS6D01G248700 chr6B 87.031 293 27 6 5862 6148 526736352 526736065 3.010000e-83 320.0
20 TraesCS6D01G248700 chr6B 93.377 151 10 0 3545 3695 526738816 526738666 2.420000e-54 224.0
21 TraesCS6D01G248700 chr2A 79.227 2017 330 60 3723 5689 763367374 763369351 0.000000e+00 1321.0
22 TraesCS6D01G248700 chr2A 91.368 475 39 1 1063 1535 763364618 763365092 0.000000e+00 649.0
23 TraesCS6D01G248700 chr2A 90.909 154 9 3 1574 1722 763365161 763365314 1.140000e-47 202.0
24 TraesCS6D01G248700 chr2A 77.348 362 49 25 1349 1685 694631343 694631696 4.120000e-42 183.0
25 TraesCS6D01G248700 chr2B 79.167 1992 335 53 3749 5701 797625442 797627392 0.000000e+00 1306.0
26 TraesCS6D01G248700 chr2B 87.519 665 57 15 1063 1722 797622796 797623439 0.000000e+00 745.0
27 TraesCS6D01G248700 chr2B 83.654 312 35 8 2671 2969 67168454 67168146 5.100000e-71 279.0
28 TraesCS6D01G248700 chr2B 76.889 225 47 4 478 698 96104619 96104396 9.100000e-24 122.0
29 TraesCS6D01G248700 chr2B 87.059 85 10 1 612 695 379834958 379835042 1.980000e-15 95.3
30 TraesCS6D01G248700 chr3D 98.502 534 7 1 6149 6682 548634527 548633995 0.000000e+00 941.0
31 TraesCS6D01G248700 chr3D 82.251 862 134 12 2673 3529 523340652 523341499 0.000000e+00 726.0
32 TraesCS6D01G248700 chr3D 80.941 871 152 9 2666 3528 153173483 153174347 0.000000e+00 676.0
33 TraesCS6D01G248700 chr1D 98.131 535 8 1 6148 6682 17412499 17413031 0.000000e+00 931.0
34 TraesCS6D01G248700 chr2D 83.162 873 132 11 2667 3530 559392739 559391873 0.000000e+00 784.0
35 TraesCS6D01G248700 chr2D 81.435 878 127 21 2671 3530 607944299 607943440 0.000000e+00 686.0
36 TraesCS6D01G248700 chr2D 77.928 222 45 3 478 695 61343222 61343001 1.170000e-27 135.0
37 TraesCS6D01G248700 chr2D 86.957 115 11 3 2669 2782 618654103 618654214 7.030000e-25 126.0
38 TraesCS6D01G248700 chr1B 82.690 855 128 12 2665 3503 622077704 622078554 0.000000e+00 741.0
39 TraesCS6D01G248700 chr1B 83.119 776 123 6 2666 3436 497476404 497475632 0.000000e+00 701.0
40 TraesCS6D01G248700 chr7D 80.041 987 165 27 4736 5711 59733234 59732269 0.000000e+00 702.0
41 TraesCS6D01G248700 chr7D 79.840 873 167 5 2663 3528 8744786 8743916 4.400000e-176 628.0
42 TraesCS6D01G248700 chr7D 77.941 1020 182 26 3722 4705 59734312 59733300 1.240000e-166 597.0
43 TraesCS6D01G248700 chr7D 86.928 459 46 9 1072 1529 59738521 59738076 2.780000e-138 503.0
44 TraesCS6D01G248700 chr7D 95.370 108 5 0 1613 1720 59737966 59737859 8.910000e-39 172.0
45 TraesCS6D01G248700 chr7D 77.953 127 21 4 1854 1979 575407820 575407940 9.300000e-09 73.1
46 TraesCS6D01G248700 chr7D 76.271 118 22 5 567 680 104138338 104138223 2.600000e-04 58.4
47 TraesCS6D01G248700 chr7B 81.435 878 138 20 2671 3530 337924947 337925817 0.000000e+00 695.0
48 TraesCS6D01G248700 chr7B 78.462 130 21 4 1855 1983 636939820 636939943 2.000000e-10 78.7
49 TraesCS6D01G248700 chrUn 79.838 987 166 28 4736 5711 84015945 84014981 0.000000e+00 689.0
50 TraesCS6D01G248700 chrUn 77.930 1024 180 30 3722 4705 84017028 84016011 1.240000e-166 597.0
51 TraesCS6D01G248700 chr4B 82.065 775 127 11 2763 3530 375789233 375790002 0.000000e+00 651.0
52 TraesCS6D01G248700 chr4B 77.358 212 39 9 483 690 518147236 518147030 4.230000e-22 117.0
53 TraesCS6D01G248700 chr5B 95.556 405 16 2 6145 6549 75804552 75804954 0.000000e+00 647.0
54 TraesCS6D01G248700 chr5B 95.970 397 12 3 6149 6545 670525984 670526376 5.650000e-180 641.0
55 TraesCS6D01G248700 chr5B 96.667 120 4 0 6563 6682 670517994 670518113 4.090000e-47 200.0
56 TraesCS6D01G248700 chr5B 96.667 120 2 2 6563 6682 75804942 75805059 1.470000e-46 198.0
57 TraesCS6D01G248700 chr5B 80.537 149 24 4 541 688 245732565 245732709 7.080000e-20 110.0
58 TraesCS6D01G248700 chr3B 94.660 412 13 3 6138 6549 18960728 18961130 1.220000e-176 630.0
59 TraesCS6D01G248700 chr3B 95.935 123 2 1 6563 6682 18961118 18961240 5.290000e-46 196.0
60 TraesCS6D01G248700 chr3B 95.935 123 2 1 6563 6682 19000312 19000434 5.290000e-46 196.0
61 TraesCS6D01G248700 chr3A 91.954 435 23 9 6120 6549 140032616 140033043 3.450000e-167 599.0
62 TraesCS6D01G248700 chr7A 86.842 456 46 5 1072 1526 63872419 63872861 1.290000e-136 497.0
63 TraesCS6D01G248700 chr7A 78.947 627 121 8 3722 4343 63874600 63875220 3.730000e-112 416.0
64 TraesCS6D01G248700 chr4D 79.630 216 40 4 483 695 327379798 327379584 1.160000e-32 152.0
65 TraesCS6D01G248700 chr4D 75.238 315 55 18 395 690 8624667 8624977 1.960000e-25 128.0
66 TraesCS6D01G248700 chr5D 78.802 217 41 4 483 695 281011338 281011123 2.510000e-29 141.0
67 TraesCS6D01G248700 chr5D 78.070 228 44 5 472 695 350373866 350373641 9.040000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G248700 chr6D 352148385 352155066 6681 False 12340.000000 12340 100.000000 1 6682 1 chr6D.!!$F1 6681
1 TraesCS6D01G248700 chr6D 352351533 352356566 5033 False 1144.000000 1493 83.610500 998 5697 2 chr6D.!!$F3 4699
2 TraesCS6D01G248700 chr6D 16137749 16138294 545 True 959.000000 959 98.355000 6136 6682 1 chr6D.!!$R3 546
3 TraesCS6D01G248700 chr6D 16133010 16133542 532 True 957.000000 957 99.064000 6149 6682 1 chr6D.!!$R2 533
4 TraesCS6D01G248700 chr6D 6939688 6940220 532 True 948.000000 948 98.692000 6148 6682 1 chr6D.!!$R1 534
5 TraesCS6D01G248700 chr6A 490835900 490842010 6110 True 2083.000000 3831 87.774667 1 6148 3 chr6A.!!$R2 6147
6 TraesCS6D01G248700 chr6A 490494551 490500173 5622 True 803.333333 1537 85.114000 998 5697 3 chr6A.!!$R1 4699
7 TraesCS6D01G248700 chr6B 526736065 526742379 6314 True 1175.500000 3692 90.628000 820 6148 6 chr6B.!!$R2 5328
8 TraesCS6D01G248700 chr6B 526719584 526725089 5505 True 1125.500000 1454 83.379000 998 5697 2 chr6B.!!$R1 4699
9 TraesCS6D01G248700 chr2A 763364618 763369351 4733 False 724.000000 1321 87.168000 1063 5689 3 chr2A.!!$F2 4626
10 TraesCS6D01G248700 chr2B 797622796 797627392 4596 False 1025.500000 1306 83.343000 1063 5701 2 chr2B.!!$F2 4638
11 TraesCS6D01G248700 chr3D 548633995 548634527 532 True 941.000000 941 98.502000 6149 6682 1 chr3D.!!$R1 533
12 TraesCS6D01G248700 chr3D 523340652 523341499 847 False 726.000000 726 82.251000 2673 3529 1 chr3D.!!$F2 856
13 TraesCS6D01G248700 chr3D 153173483 153174347 864 False 676.000000 676 80.941000 2666 3528 1 chr3D.!!$F1 862
14 TraesCS6D01G248700 chr1D 17412499 17413031 532 False 931.000000 931 98.131000 6148 6682 1 chr1D.!!$F1 534
15 TraesCS6D01G248700 chr2D 559391873 559392739 866 True 784.000000 784 83.162000 2667 3530 1 chr2D.!!$R2 863
16 TraesCS6D01G248700 chr2D 607943440 607944299 859 True 686.000000 686 81.435000 2671 3530 1 chr2D.!!$R3 859
17 TraesCS6D01G248700 chr1B 622077704 622078554 850 False 741.000000 741 82.690000 2665 3503 1 chr1B.!!$F1 838
18 TraesCS6D01G248700 chr1B 497475632 497476404 772 True 701.000000 701 83.119000 2666 3436 1 chr1B.!!$R1 770
19 TraesCS6D01G248700 chr7D 8743916 8744786 870 True 628.000000 628 79.840000 2663 3528 1 chr7D.!!$R1 865
20 TraesCS6D01G248700 chr7D 59732269 59738521 6252 True 493.500000 702 85.070000 1072 5711 4 chr7D.!!$R3 4639
21 TraesCS6D01G248700 chr7B 337924947 337925817 870 False 695.000000 695 81.435000 2671 3530 1 chr7B.!!$F1 859
22 TraesCS6D01G248700 chrUn 84014981 84017028 2047 True 643.000000 689 78.884000 3722 5711 2 chrUn.!!$R1 1989
23 TraesCS6D01G248700 chr4B 375789233 375790002 769 False 651.000000 651 82.065000 2763 3530 1 chr4B.!!$F1 767
24 TraesCS6D01G248700 chr5B 75804552 75805059 507 False 422.500000 647 96.111500 6145 6682 2 chr5B.!!$F4 537
25 TraesCS6D01G248700 chr3B 18960728 18961240 512 False 413.000000 630 95.297500 6138 6682 2 chr3B.!!$F2 544
26 TraesCS6D01G248700 chr7A 63872419 63875220 2801 False 456.500000 497 82.894500 1072 4343 2 chr7A.!!$F1 3271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1057 0.385223 CCGGTATAGACGTACAGCGC 60.385 60.0 0.00 0.00 46.11 5.92 F
1828 1960 0.319383 AGAGCGCGCATCCTTGATAG 60.319 55.0 35.10 0.00 0.00 2.08 F
1850 1982 0.034337 ATGTAAACCACGCACCGTCT 59.966 50.0 0.00 0.00 38.32 4.18 F
1968 2100 0.110644 GCTTTGCGGCGCTGTATATC 60.111 55.0 33.26 11.39 0.00 1.63 F
1969 2101 0.161658 CTTTGCGGCGCTGTATATCG 59.838 55.0 33.26 6.86 0.00 2.92 F
2069 2204 0.249489 GACGGGCGAACATAGCAGAT 60.249 55.0 0.00 0.00 36.08 2.90 F
4545 12096 0.456312 GGTTCTACTCGCTGACGGTG 60.456 60.0 0.00 0.00 40.63 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 1963 0.034337 AGACGGTGCGTGGTTTACAT 59.966 50.000 0.0 0.0 41.37 2.29 R
2634 3969 0.168128 GTTGTGCCAGCGGATTGTAC 59.832 55.000 0.0 0.0 0.00 2.90 R
3762 11258 0.605589 ACTCTTCCTTCTCGTGCAGG 59.394 55.000 0.0 0.0 0.00 4.85 R
4269 11765 3.064987 GCTGAGCCCGTAAGCGAGA 62.065 63.158 0.0 0.0 41.33 4.04 R
4302 11798 3.932580 GACGTGCGAGATGGTGGCA 62.933 63.158 0.0 0.0 37.59 4.92 R
4707 12259 6.017400 CAAAATTGCAGGAGATTACACTGT 57.983 37.500 0.0 0.0 34.79 3.55 R
5755 13363 0.478072 ATTGCTTGGGGTGTGACAGA 59.522 50.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 7.874016 TGATGCTTAGCAATGTTTTCTTGATTT 59.126 29.630 12.08 0.00 43.62 2.17
215 223 6.980397 ACAGATTTAGTTGTTTTTGCTGGAAG 59.020 34.615 0.00 0.00 0.00 3.46
216 224 6.980397 CAGATTTAGTTGTTTTTGCTGGAAGT 59.020 34.615 0.00 0.00 35.30 3.01
226 234 6.914757 TGTTTTTGCTGGAAGTTTTGTTTTTG 59.085 30.769 0.00 0.00 35.30 2.44
236 244 6.293135 GGAAGTTTTGTTTTTGTTTGCTGACA 60.293 34.615 0.00 0.00 0.00 3.58
272 293 3.699538 GGATGGTCAACTGGGTTAAATCC 59.300 47.826 0.00 0.00 0.00 3.01
273 294 3.885976 TGGTCAACTGGGTTAAATCCA 57.114 42.857 0.00 0.00 0.00 3.41
287 308 2.198304 AATCCAGTCAACGGGGAGGC 62.198 60.000 0.00 0.00 33.47 4.70
316 339 9.710900 GGATTGAATCCTGACAAAATTTAAGTT 57.289 29.630 16.79 0.00 46.19 2.66
324 347 6.636850 CCTGACAAAATTTAAGTTCGAGGTTG 59.363 38.462 0.00 0.00 0.00 3.77
328 351 9.673454 GACAAAATTTAAGTTCGAGGTTGTAAT 57.327 29.630 0.00 0.00 0.00 1.89
330 353 9.458374 CAAAATTTAAGTTCGAGGTTGTAATGT 57.542 29.630 0.00 0.00 0.00 2.71
337 360 2.569853 TCGAGGTTGTAATGTGGATGGT 59.430 45.455 0.00 0.00 0.00 3.55
338 361 3.770388 TCGAGGTTGTAATGTGGATGGTA 59.230 43.478 0.00 0.00 0.00 3.25
340 363 5.104693 TCGAGGTTGTAATGTGGATGGTATT 60.105 40.000 0.00 0.00 0.00 1.89
341 364 5.007626 CGAGGTTGTAATGTGGATGGTATTG 59.992 44.000 0.00 0.00 0.00 1.90
344 367 6.826741 AGGTTGTAATGTGGATGGTATTGTAC 59.173 38.462 0.00 0.00 0.00 2.90
364 387 6.240145 TGTACTTGGGGGTTGTAAATTAGAC 58.760 40.000 0.00 0.00 0.00 2.59
369 392 4.080186 TGGGGGTTGTAAATTAGACTAGGC 60.080 45.833 0.00 0.00 0.00 3.93
380 403 7.735326 AAATTAGACTAGGCCAAGAGTTAGA 57.265 36.000 5.01 0.00 0.00 2.10
393 416 6.599638 GCCAAGAGTTAGAGGTTGAAATATGT 59.400 38.462 0.00 0.00 0.00 2.29
500 546 6.704050 CCCAATTTACTTCCGTGTGAAATTTT 59.296 34.615 0.00 0.00 29.51 1.82
531 577 3.261981 ACCAGGAATCGTATTGGTGTC 57.738 47.619 0.00 0.00 42.12 3.67
532 578 2.093128 ACCAGGAATCGTATTGGTGTCC 60.093 50.000 0.00 0.00 42.12 4.02
586 632 6.396829 AAGCTATTTTGATGGATTGTAGGC 57.603 37.500 0.00 0.00 0.00 3.93
595 641 0.539986 GGATTGTAGGCCGGACTTCA 59.460 55.000 19.46 16.04 0.00 3.02
598 644 2.396590 TTGTAGGCCGGACTTCATTC 57.603 50.000 19.46 1.76 0.00 2.67
622 668 3.880047 TCGTCACGGATACATTTCCTT 57.120 42.857 0.00 0.00 33.30 3.36
625 671 3.062099 CGTCACGGATACATTTCCTTGTG 59.938 47.826 0.00 0.00 36.63 3.33
648 694 3.392769 TTTTCACGAAACTTCACACGG 57.607 42.857 0.00 0.00 0.00 4.94
649 695 1.292061 TTCACGAAACTTCACACGGG 58.708 50.000 0.00 0.00 0.00 5.28
655 701 2.067013 GAAACTTCACACGGGAGTAGC 58.933 52.381 0.00 0.00 44.67 3.58
694 741 8.360390 GTTTGATATCCCAAGACTTCAGTTTTT 58.640 33.333 0.00 0.00 0.00 1.94
737 784 8.779354 TTTCGAATTTTAAATTTGTATGGGGG 57.221 30.769 14.99 0.00 0.00 5.40
758 805 4.807631 GGGGCGGCGGTGGTATTT 62.808 66.667 9.78 0.00 0.00 1.40
759 806 3.206957 GGGCGGCGGTGGTATTTC 61.207 66.667 9.78 0.00 0.00 2.17
760 807 3.206957 GGCGGCGGTGGTATTTCC 61.207 66.667 9.78 0.00 0.00 3.13
761 808 3.206957 GCGGCGGTGGTATTTCCC 61.207 66.667 9.78 0.00 34.77 3.97
762 809 2.893404 CGGCGGTGGTATTTCCCG 60.893 66.667 0.00 0.00 44.46 5.14
763 810 2.269883 GGCGGTGGTATTTCCCGT 59.730 61.111 0.00 0.00 43.56 5.28
764 811 2.110352 GGCGGTGGTATTTCCCGTG 61.110 63.158 0.00 0.00 43.56 4.94
782 838 2.866156 CGTGTGCACTTCTCTCTTTCAA 59.134 45.455 19.41 0.00 0.00 2.69
784 840 4.592179 GTGTGCACTTCTCTCTTTCAAAC 58.408 43.478 19.41 0.00 0.00 2.93
864 920 3.077359 AGAAGCCTGACAACAGTAATGC 58.923 45.455 0.00 0.00 42.05 3.56
913 969 5.187772 AGAATGTGGACACAATAGTAGCTGA 59.812 40.000 9.42 0.00 45.41 4.26
914 970 4.882842 TGTGGACACAATAGTAGCTGAA 57.117 40.909 2.08 0.00 38.56 3.02
915 971 5.222079 TGTGGACACAATAGTAGCTGAAA 57.778 39.130 2.08 0.00 38.56 2.69
920 976 3.279434 CACAATAGTAGCTGAAACCCCC 58.721 50.000 0.00 0.00 0.00 5.40
922 978 0.468648 ATAGTAGCTGAAACCCCCGC 59.531 55.000 0.00 0.00 0.00 6.13
934 1000 0.703407 ACCCCCGCCCCCTATAAATT 60.703 55.000 0.00 0.00 0.00 1.82
960 1026 1.997311 CATCAGACCCCTGCTCCCA 60.997 63.158 0.00 0.00 40.20 4.37
961 1027 1.692042 ATCAGACCCCTGCTCCCAG 60.692 63.158 0.00 0.00 40.20 4.45
991 1057 0.385223 CCGGTATAGACGTACAGCGC 60.385 60.000 0.00 0.00 46.11 5.92
1240 1309 2.485582 CGCTCGTCATCACCTCGT 59.514 61.111 0.00 0.00 0.00 4.18
1245 1314 1.200252 CTCGTCATCACCTCGTTGACT 59.800 52.381 0.00 0.00 40.69 3.41
1593 1700 3.685139 TTCTTACTTCTGCTCTGTGGG 57.315 47.619 0.00 0.00 0.00 4.61
1602 1716 3.031013 TCTGCTCTGTGGGATCGAAATA 58.969 45.455 0.00 0.00 0.00 1.40
1793 1925 9.615295 TTCTTGCGTTATTACATTCTTTTTACC 57.385 29.630 0.00 0.00 0.00 2.85
1795 1927 7.361889 TGCGTTATTACATTCTTTTTACCGA 57.638 32.000 0.00 0.00 0.00 4.69
1796 1928 7.976826 TGCGTTATTACATTCTTTTTACCGAT 58.023 30.769 0.00 0.00 0.00 4.18
1816 1948 6.016111 CCGATGTATGTATATATAGAGCGCG 58.984 44.000 15.68 0.00 35.29 6.86
1819 1951 6.313744 TGTATGTATATATAGAGCGCGCAT 57.686 37.500 35.10 23.61 0.00 4.73
1821 1953 4.224715 TGTATATATAGAGCGCGCATCC 57.775 45.455 35.10 21.22 0.00 3.51
1822 1954 3.883489 TGTATATATAGAGCGCGCATCCT 59.117 43.478 35.10 26.75 0.00 3.24
1823 1955 4.338400 TGTATATATAGAGCGCGCATCCTT 59.662 41.667 35.10 12.64 0.00 3.36
1824 1956 2.001812 ATATAGAGCGCGCATCCTTG 57.998 50.000 35.10 0.00 0.00 3.61
1825 1957 0.958822 TATAGAGCGCGCATCCTTGA 59.041 50.000 35.10 12.93 0.00 3.02
1826 1958 0.319728 ATAGAGCGCGCATCCTTGAT 59.680 50.000 35.10 9.89 0.00 2.57
1828 1960 0.319383 AGAGCGCGCATCCTTGATAG 60.319 55.000 35.10 0.00 0.00 2.08
1829 1961 1.287730 GAGCGCGCATCCTTGATAGG 61.288 60.000 35.10 0.00 43.46 2.57
1830 1962 2.320587 GCGCGCATCCTTGATAGGG 61.321 63.158 29.10 0.00 42.26 3.53
1831 1963 1.367471 CGCGCATCCTTGATAGGGA 59.633 57.895 8.75 0.00 42.26 4.20
1832 1964 0.036952 CGCGCATCCTTGATAGGGAT 60.037 55.000 8.75 0.00 43.60 3.85
1841 1973 5.367945 TCCTTGATAGGGATGTAAACCAC 57.632 43.478 0.00 0.00 42.26 4.16
1842 1974 4.127171 CCTTGATAGGGATGTAAACCACG 58.873 47.826 0.00 0.00 37.94 4.94
1843 1975 3.188159 TGATAGGGATGTAAACCACGC 57.812 47.619 0.00 0.00 0.00 5.34
1844 1976 2.502130 TGATAGGGATGTAAACCACGCA 59.498 45.455 0.00 0.00 0.00 5.24
1845 1977 2.389962 TAGGGATGTAAACCACGCAC 57.610 50.000 0.00 0.00 0.00 5.34
1846 1978 0.322187 AGGGATGTAAACCACGCACC 60.322 55.000 0.00 0.00 0.00 5.01
1847 1979 1.641123 GGGATGTAAACCACGCACCG 61.641 60.000 0.00 0.00 0.00 4.94
1848 1980 0.952010 GGATGTAAACCACGCACCGT 60.952 55.000 0.00 0.00 42.36 4.83
1849 1981 0.441145 GATGTAAACCACGCACCGTC 59.559 55.000 0.00 0.00 38.32 4.79
1850 1982 0.034337 ATGTAAACCACGCACCGTCT 59.966 50.000 0.00 0.00 38.32 4.18
1851 1983 0.672889 TGTAAACCACGCACCGTCTA 59.327 50.000 0.00 0.00 38.32 2.59
1852 1984 1.068281 TGTAAACCACGCACCGTCTAA 59.932 47.619 0.00 0.00 38.32 2.10
1853 1985 1.723003 GTAAACCACGCACCGTCTAAG 59.277 52.381 0.00 0.00 38.32 2.18
1854 1986 1.226030 AAACCACGCACCGTCTAAGC 61.226 55.000 0.00 0.00 38.32 3.09
1855 1987 2.813908 CCACGCACCGTCTAAGCC 60.814 66.667 0.00 0.00 38.32 4.35
1856 1988 2.261671 CACGCACCGTCTAAGCCT 59.738 61.111 0.00 0.00 38.32 4.58
1857 1989 2.094659 CACGCACCGTCTAAGCCTG 61.095 63.158 0.00 0.00 38.32 4.85
1858 1990 2.261671 CGCACCGTCTAAGCCTGT 59.738 61.111 0.00 0.00 0.00 4.00
1859 1991 1.374252 CGCACCGTCTAAGCCTGTT 60.374 57.895 0.00 0.00 0.00 3.16
1860 1992 0.949105 CGCACCGTCTAAGCCTGTTT 60.949 55.000 0.00 0.00 0.00 2.83
1861 1993 1.670674 CGCACCGTCTAAGCCTGTTTA 60.671 52.381 0.00 0.00 0.00 2.01
1862 1994 2.419667 GCACCGTCTAAGCCTGTTTAA 58.580 47.619 0.00 0.00 0.00 1.52
1863 1995 2.415512 GCACCGTCTAAGCCTGTTTAAG 59.584 50.000 0.00 0.00 0.00 1.85
1864 1996 2.415512 CACCGTCTAAGCCTGTTTAAGC 59.584 50.000 0.00 0.00 0.00 3.09
1865 1997 2.007608 CCGTCTAAGCCTGTTTAAGCC 58.992 52.381 0.00 0.00 0.00 4.35
1866 1998 2.007608 CGTCTAAGCCTGTTTAAGCCC 58.992 52.381 0.00 0.00 0.00 5.19
1867 1999 2.614481 CGTCTAAGCCTGTTTAAGCCCA 60.614 50.000 0.00 0.00 0.00 5.36
1868 2000 2.747989 GTCTAAGCCTGTTTAAGCCCAC 59.252 50.000 0.00 0.00 0.00 4.61
1869 2001 2.642807 TCTAAGCCTGTTTAAGCCCACT 59.357 45.455 0.00 0.00 0.00 4.00
1870 2002 2.381752 AAGCCTGTTTAAGCCCACTT 57.618 45.000 0.00 0.00 40.07 3.16
1871 2003 3.518992 AAGCCTGTTTAAGCCCACTTA 57.481 42.857 0.00 0.00 37.33 2.24
1872 2004 3.739401 AGCCTGTTTAAGCCCACTTAT 57.261 42.857 0.00 0.00 38.18 1.73
1873 2005 3.621558 AGCCTGTTTAAGCCCACTTATC 58.378 45.455 0.00 0.00 38.18 1.75
1874 2006 3.010138 AGCCTGTTTAAGCCCACTTATCA 59.990 43.478 0.00 0.00 38.18 2.15
1875 2007 3.378427 GCCTGTTTAAGCCCACTTATCAG 59.622 47.826 0.00 0.00 38.18 2.90
1876 2008 4.589908 CCTGTTTAAGCCCACTTATCAGT 58.410 43.478 12.81 0.00 38.18 3.41
1877 2009 4.636206 CCTGTTTAAGCCCACTTATCAGTC 59.364 45.833 12.81 0.00 38.18 3.51
1878 2010 5.491982 CTGTTTAAGCCCACTTATCAGTCT 58.508 41.667 0.00 0.00 38.18 3.24
1879 2011 6.351881 CCTGTTTAAGCCCACTTATCAGTCTA 60.352 42.308 12.81 0.00 38.18 2.59
1880 2012 7.011499 TGTTTAAGCCCACTTATCAGTCTAA 57.989 36.000 0.00 0.00 38.18 2.10
1881 2013 6.877322 TGTTTAAGCCCACTTATCAGTCTAAC 59.123 38.462 0.00 0.00 38.18 2.34
1882 2014 6.614694 TTAAGCCCACTTATCAGTCTAACA 57.385 37.500 0.00 0.00 38.18 2.41
1883 2015 4.744795 AGCCCACTTATCAGTCTAACAG 57.255 45.455 0.00 0.00 0.00 3.16
1884 2016 4.097418 AGCCCACTTATCAGTCTAACAGT 58.903 43.478 0.00 0.00 0.00 3.55
1885 2017 4.532521 AGCCCACTTATCAGTCTAACAGTT 59.467 41.667 0.00 0.00 0.00 3.16
1886 2018 4.870991 GCCCACTTATCAGTCTAACAGTTC 59.129 45.833 0.00 0.00 0.00 3.01
1887 2019 5.568825 GCCCACTTATCAGTCTAACAGTTCA 60.569 44.000 0.00 0.00 0.00 3.18
1888 2020 6.464222 CCCACTTATCAGTCTAACAGTTCAA 58.536 40.000 0.00 0.00 0.00 2.69
1889 2021 6.591834 CCCACTTATCAGTCTAACAGTTCAAG 59.408 42.308 0.00 0.00 0.00 3.02
1890 2022 7.378966 CCACTTATCAGTCTAACAGTTCAAGA 58.621 38.462 0.00 0.00 0.00 3.02
1891 2023 7.872993 CCACTTATCAGTCTAACAGTTCAAGAA 59.127 37.037 0.00 0.00 0.00 2.52
1892 2024 9.429359 CACTTATCAGTCTAACAGTTCAAGAAT 57.571 33.333 0.00 0.00 0.00 2.40
1898 2030 9.832445 TCAGTCTAACAGTTCAAGAATAAAGTT 57.168 29.630 0.00 0.00 0.00 2.66
1928 2060 9.780413 CTTTCCTAGAAAAATGAACTATTGAGC 57.220 33.333 0.00 0.00 0.00 4.26
1929 2061 9.520515 TTTCCTAGAAAAATGAACTATTGAGCT 57.479 29.630 0.00 0.00 0.00 4.09
1949 2081 8.973835 TGAGCTAACAAAAATAAATAAACGGG 57.026 30.769 0.00 0.00 0.00 5.28
1950 2082 7.542824 TGAGCTAACAAAAATAAATAAACGGGC 59.457 33.333 0.00 0.00 0.00 6.13
1951 2083 7.608153 AGCTAACAAAAATAAATAAACGGGCT 58.392 30.769 0.00 0.00 0.00 5.19
1952 2084 8.092068 AGCTAACAAAAATAAATAAACGGGCTT 58.908 29.630 0.00 0.00 0.00 4.35
1953 2085 8.714179 GCTAACAAAAATAAATAAACGGGCTTT 58.286 29.630 0.00 0.00 0.00 3.51
1955 2087 6.893759 ACAAAAATAAATAAACGGGCTTTGC 58.106 32.000 0.00 0.00 0.00 3.68
1956 2088 5.771602 AAAATAAATAAACGGGCTTTGCG 57.228 34.783 0.00 0.00 0.00 4.85
1957 2089 2.923605 TAAATAAACGGGCTTTGCGG 57.076 45.000 0.00 0.00 0.00 5.69
1958 2090 0.389296 AAATAAACGGGCTTTGCGGC 60.389 50.000 0.00 0.00 37.49 6.53
1959 2091 2.536323 AATAAACGGGCTTTGCGGCG 62.536 55.000 0.51 0.51 39.52 6.46
1965 2097 3.508840 GGCTTTGCGGCGCTGTAT 61.509 61.111 33.26 0.00 0.00 2.29
1966 2098 2.177580 GGCTTTGCGGCGCTGTATA 61.178 57.895 33.26 9.45 0.00 1.47
1967 2099 1.507141 GGCTTTGCGGCGCTGTATAT 61.507 55.000 33.26 0.00 0.00 0.86
1968 2100 0.110644 GCTTTGCGGCGCTGTATATC 60.111 55.000 33.26 11.39 0.00 1.63
1969 2101 0.161658 CTTTGCGGCGCTGTATATCG 59.838 55.000 33.26 6.86 0.00 2.92
1970 2102 0.528901 TTTGCGGCGCTGTATATCGT 60.529 50.000 33.26 0.00 0.00 3.73
1971 2103 1.212455 TTGCGGCGCTGTATATCGTG 61.212 55.000 33.26 0.00 0.00 4.35
1972 2104 1.660575 GCGGCGCTGTATATCGTGT 60.661 57.895 26.86 0.00 0.00 4.49
1973 2105 1.606350 GCGGCGCTGTATATCGTGTC 61.606 60.000 26.86 0.00 0.00 3.67
1974 2106 0.317519 CGGCGCTGTATATCGTGTCA 60.318 55.000 8.45 0.00 0.00 3.58
1975 2107 1.666023 CGGCGCTGTATATCGTGTCAT 60.666 52.381 8.45 0.00 0.00 3.06
1976 2108 2.404215 GGCGCTGTATATCGTGTCATT 58.596 47.619 7.64 0.00 0.00 2.57
1977 2109 2.800544 GGCGCTGTATATCGTGTCATTT 59.199 45.455 7.64 0.00 0.00 2.32
1978 2110 3.985279 GGCGCTGTATATCGTGTCATTTA 59.015 43.478 7.64 0.00 0.00 1.40
1979 2111 4.446385 GGCGCTGTATATCGTGTCATTTAA 59.554 41.667 7.64 0.00 0.00 1.52
1980 2112 5.050634 GGCGCTGTATATCGTGTCATTTAAA 60.051 40.000 7.64 0.00 0.00 1.52
1981 2113 6.347402 GGCGCTGTATATCGTGTCATTTAAAT 60.347 38.462 7.64 0.00 0.00 1.40
1982 2114 6.732392 GCGCTGTATATCGTGTCATTTAAATC 59.268 38.462 0.00 0.00 0.00 2.17
1983 2115 7.359264 GCGCTGTATATCGTGTCATTTAAATCT 60.359 37.037 0.00 0.00 0.00 2.40
1984 2116 8.156553 CGCTGTATATCGTGTCATTTAAATCTC 58.843 37.037 0.00 0.00 0.00 2.75
1985 2117 9.197694 GCTGTATATCGTGTCATTTAAATCTCT 57.802 33.333 0.00 0.00 0.00 3.10
2048 2183 5.465532 TGCCACTAGATTTTGCATTTTGA 57.534 34.783 0.00 0.00 0.00 2.69
2062 2197 1.600023 TTTTGAAGACGGGCGAACAT 58.400 45.000 0.00 0.00 0.00 2.71
2065 2200 0.459585 TGAAGACGGGCGAACATAGC 60.460 55.000 0.00 0.00 0.00 2.97
2066 2201 0.459585 GAAGACGGGCGAACATAGCA 60.460 55.000 0.00 0.00 36.08 3.49
2067 2202 0.460284 AAGACGGGCGAACATAGCAG 60.460 55.000 0.00 0.00 36.08 4.24
2068 2203 1.141019 GACGGGCGAACATAGCAGA 59.859 57.895 0.00 0.00 36.08 4.26
2069 2204 0.249489 GACGGGCGAACATAGCAGAT 60.249 55.000 0.00 0.00 36.08 2.90
2070 2205 1.000607 GACGGGCGAACATAGCAGATA 60.001 52.381 0.00 0.00 36.08 1.98
2071 2206 1.000163 ACGGGCGAACATAGCAGATAG 60.000 52.381 0.00 0.00 36.08 2.08
2089 2524 5.069516 CAGATAGCACTGCCCCATTAAATTT 59.930 40.000 0.00 0.00 0.00 1.82
2090 2525 6.265196 CAGATAGCACTGCCCCATTAAATTTA 59.735 38.462 0.00 0.00 0.00 1.40
2148 2589 5.008316 GGTTCGTTCATTACTTGGTTTGTCT 59.992 40.000 0.00 0.00 0.00 3.41
2156 2597 7.383687 TCATTACTTGGTTTGTCTTCGAGTAT 58.616 34.615 0.00 0.00 30.27 2.12
2157 2598 8.525316 TCATTACTTGGTTTGTCTTCGAGTATA 58.475 33.333 0.00 0.00 30.27 1.47
2158 2599 8.808529 CATTACTTGGTTTGTCTTCGAGTATAG 58.191 37.037 0.00 0.00 30.27 1.31
2159 2600 6.585695 ACTTGGTTTGTCTTCGAGTATAGA 57.414 37.500 0.00 0.00 0.00 1.98
2160 2601 6.622549 ACTTGGTTTGTCTTCGAGTATAGAG 58.377 40.000 0.00 0.00 0.00 2.43
2161 2602 6.433404 ACTTGGTTTGTCTTCGAGTATAGAGA 59.567 38.462 0.00 0.00 0.00 3.10
2162 2603 6.829229 TGGTTTGTCTTCGAGTATAGAGAA 57.171 37.500 0.00 0.00 0.00 2.87
2163 2604 7.223260 TGGTTTGTCTTCGAGTATAGAGAAA 57.777 36.000 3.72 3.72 33.04 2.52
2164 2605 7.088905 TGGTTTGTCTTCGAGTATAGAGAAAC 58.911 38.462 20.87 20.87 46.04 2.78
2165 2606 7.039923 TGGTTTGTCTTCGAGTATAGAGAAACT 60.040 37.037 24.81 0.00 46.02 2.66
2166 2607 7.813627 GGTTTGTCTTCGAGTATAGAGAAACTT 59.186 37.037 24.81 0.00 46.02 2.66
2167 2608 9.837525 GTTTGTCTTCGAGTATAGAGAAACTTA 57.162 33.333 21.37 0.00 44.63 2.24
2168 2609 9.837525 TTTGTCTTCGAGTATAGAGAAACTTAC 57.162 33.333 3.72 0.00 31.23 2.34
2169 2610 8.789825 TGTCTTCGAGTATAGAGAAACTTACT 57.210 34.615 0.00 0.00 0.00 2.24
2170 2611 8.666573 TGTCTTCGAGTATAGAGAAACTTACTG 58.333 37.037 0.00 0.00 0.00 2.74
2171 2612 8.881743 GTCTTCGAGTATAGAGAAACTTACTGA 58.118 37.037 0.00 0.00 0.00 3.41
2172 2613 8.881743 TCTTCGAGTATAGAGAAACTTACTGAC 58.118 37.037 0.00 0.00 0.00 3.51
2173 2614 7.231705 TCGAGTATAGAGAAACTTACTGACG 57.768 40.000 0.00 0.00 0.00 4.35
2174 2615 6.257411 TCGAGTATAGAGAAACTTACTGACGG 59.743 42.308 0.00 0.00 0.00 4.79
2175 2616 6.257411 CGAGTATAGAGAAACTTACTGACGGA 59.743 42.308 0.00 0.00 0.00 4.69
2176 2617 7.517101 CGAGTATAGAGAAACTTACTGACGGAG 60.517 44.444 0.00 0.00 0.00 4.63
2190 2632 0.597072 ACGGAGTCGACAGAGAAACC 59.403 55.000 19.50 7.96 29.74 3.27
2198 2640 6.256912 AGTCGACAGAGAAACCTACTAAAG 57.743 41.667 19.50 0.00 0.00 1.85
2231 2673 6.497939 CTACAAATAGCTGCACTAAGTACG 57.502 41.667 1.02 0.00 33.57 3.67
2288 2749 3.119602 TGAAGTCGATGGAGAAAGGTACG 60.120 47.826 0.00 0.00 0.00 3.67
2289 2750 2.444421 AGTCGATGGAGAAAGGTACGT 58.556 47.619 0.00 0.00 0.00 3.57
2290 2751 3.614092 AGTCGATGGAGAAAGGTACGTA 58.386 45.455 0.00 0.00 0.00 3.57
2291 2752 3.376546 AGTCGATGGAGAAAGGTACGTAC 59.623 47.826 17.56 17.56 0.00 3.67
2306 2767 1.271001 ACGTACTGCCCCAAGGTAAAC 60.271 52.381 0.00 0.00 34.57 2.01
2354 2816 1.537202 GCTGGGCCGAGCTAATATTTG 59.463 52.381 30.46 0.00 35.95 2.32
2380 2843 5.057149 AGTGTCAAGTGTGTTAACCATCTC 58.943 41.667 2.48 0.00 0.00 2.75
2381 2844 4.213482 GTGTCAAGTGTGTTAACCATCTCC 59.787 45.833 2.48 0.00 0.00 3.71
2483 2948 3.005367 ACCAAGGTGTTAAAATTGGCTCG 59.995 43.478 2.81 0.00 44.94 5.03
2506 3826 3.944871 GGCAGGCCGTCATTAATTG 57.055 52.632 0.00 0.00 0.00 2.32
2517 3837 6.691388 GGCCGTCATTAATTGAAGATACAAAC 59.309 38.462 0.00 0.00 36.07 2.93
2520 3840 8.335356 CCGTCATTAATTGAAGATACAAACGAT 58.665 33.333 0.00 0.00 36.07 3.73
2547 3867 4.415881 TGGAAAATAGCGGCAGAATCTA 57.584 40.909 1.45 0.00 0.00 1.98
2554 3874 1.287730 GCGGCAGAATCTATGGAGCG 61.288 60.000 0.00 0.00 0.00 5.03
2575 3910 6.221659 AGCGTAAGTATTGGATTTAGCTACC 58.778 40.000 0.00 0.00 41.68 3.18
2585 3920 3.433173 GGATTTAGCTACCCACCGACATT 60.433 47.826 0.00 0.00 0.00 2.71
2603 3938 5.134725 ACATTGAGGGAATAGGCTTTCAT 57.865 39.130 0.00 0.00 0.00 2.57
2605 3940 5.103771 ACATTGAGGGAATAGGCTTTCATCT 60.104 40.000 0.00 0.00 0.00 2.90
2634 3969 3.181476 GCATATAAAGCACCCCACCAAAG 60.181 47.826 0.00 0.00 0.00 2.77
2659 3994 3.335513 CGCTGGCACAACGGTAAA 58.664 55.556 0.00 0.00 44.88 2.01
2660 3995 1.649815 CGCTGGCACAACGGTAAAA 59.350 52.632 0.00 0.00 44.88 1.52
2731 6679 2.289444 CCCGGTACAACAGTGAGTTCAT 60.289 50.000 0.00 0.00 38.74 2.57
2732 6680 2.993899 CCGGTACAACAGTGAGTTCATC 59.006 50.000 0.00 0.00 38.74 2.92
2733 6681 2.661675 CGGTACAACAGTGAGTTCATCG 59.338 50.000 0.00 0.00 38.74 3.84
2821 7771 5.235850 TCAACAAAAGCTACAGTATCCCA 57.764 39.130 0.00 0.00 0.00 4.37
2825 7775 5.570320 ACAAAAGCTACAGTATCCCACAAT 58.430 37.500 0.00 0.00 0.00 2.71
2831 7781 1.134401 ACAGTATCCCACAATCGCTGG 60.134 52.381 0.00 0.00 0.00 4.85
2873 7823 2.880890 GCACTCCTATGCCATCGAATTT 59.119 45.455 0.00 0.00 39.86 1.82
3052 8112 2.362369 CCGGCCAGACCTGACAGAT 61.362 63.158 2.24 0.00 35.61 2.90
3162 8223 2.544685 GAGGACATCACCATTGTCTCG 58.455 52.381 4.07 0.00 42.48 4.04
3214 8275 2.109425 AAACGAAGCCACCATAGACC 57.891 50.000 0.00 0.00 0.00 3.85
3235 8296 3.432051 GACCGGCAGTATCGCAGCT 62.432 63.158 0.00 0.00 0.00 4.24
3253 8314 2.221906 CTACGTGGGAGGGGACAACG 62.222 65.000 0.00 0.00 0.00 4.10
3467 8704 1.773391 CCCTGATCCAGATGGGGCT 60.773 63.158 0.00 0.00 36.15 5.19
3476 8714 1.932757 AGATGGGGCTCAAAGGGCT 60.933 57.895 0.00 0.00 0.00 5.19
3496 8734 1.927527 AGATCTGGGCTTGCAGGGT 60.928 57.895 0.00 0.00 0.00 4.34
3536 8810 3.329889 CAGCCCCCACCAGCACTA 61.330 66.667 0.00 0.00 0.00 2.74
3537 8811 2.286425 AGCCCCCACCAGCACTAT 60.286 61.111 0.00 0.00 0.00 2.12
3538 8812 2.193248 GCCCCCACCAGCACTATC 59.807 66.667 0.00 0.00 0.00 2.08
3539 8813 2.679342 GCCCCCACCAGCACTATCA 61.679 63.158 0.00 0.00 0.00 2.15
3541 8815 1.274703 CCCCCACCAGCACTATCAGT 61.275 60.000 0.00 0.00 0.00 3.41
3542 8816 1.496060 CCCCACCAGCACTATCAGTA 58.504 55.000 0.00 0.00 0.00 2.74
3543 8817 2.050144 CCCCACCAGCACTATCAGTAT 58.950 52.381 0.00 0.00 0.00 2.12
3599 9598 7.451255 ACATGTTTTTAATTGATCCACTCCAGA 59.549 33.333 0.00 0.00 0.00 3.86
3688 10073 4.449068 GGATGTTGTAAGTGATAGCCATCG 59.551 45.833 0.00 0.00 33.51 3.84
3762 11258 0.897863 TGCATTGTTGTACCAGGGCC 60.898 55.000 0.00 0.00 0.00 5.80
4269 11765 4.757149 GTCAACATCAGTACCTTCTTTGCT 59.243 41.667 0.00 0.00 0.00 3.91
4302 11798 4.087892 AGCTTCGCCACCATCGCT 62.088 61.111 0.00 0.00 0.00 4.93
4455 12005 1.067821 GAGATCTACCAGCGGTTCAGG 59.932 57.143 5.57 0.00 37.09 3.86
4545 12096 0.456312 GGTTCTACTCGCTGACGGTG 60.456 60.000 0.00 0.00 40.63 4.94
4707 12259 9.528489 AACCAGGCAAGTAAATTTAAGAATCTA 57.472 29.630 0.00 0.00 0.00 1.98
4804 12392 1.749063 TGAATGTCATCGCGGAGTACT 59.251 47.619 6.13 0.00 0.00 2.73
4950 12538 1.668419 CCCCCAGATCAATGTTCGTC 58.332 55.000 0.00 0.00 0.00 4.20
5009 12612 4.212214 CCAAAGCAGAGAGTTCAGTAACAC 59.788 45.833 0.00 0.00 38.12 3.32
5564 13172 1.154016 GCTCTACTTCGCGCTCACA 60.154 57.895 5.56 0.00 0.00 3.58
5731 13339 9.551734 CTCAAGATTGGTCATGAACTCATAATA 57.448 33.333 12.94 0.00 32.26 0.98
5755 13363 3.706802 TGCAATTGTGTTCGTGTCATT 57.293 38.095 7.40 0.00 0.00 2.57
5765 13373 2.148916 TCGTGTCATTCTGTCACACC 57.851 50.000 5.60 0.00 36.46 4.16
5857 13465 1.229428 AATAGTTCATGCCCGCATCG 58.771 50.000 0.00 0.00 33.90 3.84
5962 13646 6.742109 AGAACTGGACATGATTTGACAAAAG 58.258 36.000 4.41 0.00 0.00 2.27
5971 13655 7.555087 ACATGATTTGACAAAAGGAAGACAAA 58.445 30.769 4.41 0.00 0.00 2.83
5972 13656 8.040132 ACATGATTTGACAAAAGGAAGACAAAA 58.960 29.630 4.41 0.00 32.51 2.44
5973 13657 8.881743 CATGATTTGACAAAAGGAAGACAAAAA 58.118 29.630 4.41 0.00 32.51 1.94
6035 13724 4.230657 CGATCCATAAAGAGCCTACTTCG 58.769 47.826 0.00 0.00 0.00 3.79
6041 13730 1.171308 AAGAGCCTACTTCGCGTACA 58.829 50.000 5.77 0.00 0.00 2.90
6046 13736 3.147629 AGCCTACTTCGCGTACAGATAT 58.852 45.455 5.77 0.00 0.00 1.63
6086 13776 1.074319 CGCTGAATGCACACCATTGC 61.074 55.000 0.00 0.00 44.02 3.56
6091 13781 0.320946 AATGCACACCATTGCTTGCC 60.321 50.000 0.00 0.00 42.44 4.52
6109 13799 3.429492 TGCCTATTTGTTGCATCCTCAA 58.571 40.909 0.00 0.00 0.00 3.02
6115 13805 1.236616 TGTTGCATCCTCAAGGTGCG 61.237 55.000 14.60 0.00 41.71 5.34
6134 13824 6.319152 AGGTGCGTCCATGTATCTATATCTAC 59.681 42.308 0.00 0.00 39.02 2.59
6529 14219 3.030291 TGTCACTTGTGGCAATTTCCTT 58.970 40.909 5.52 0.00 0.00 3.36
6536 14226 5.304101 ACTTGTGGCAATTTCCTTCATTGTA 59.696 36.000 0.00 0.00 34.58 2.41
6537 14227 5.389859 TGTGGCAATTTCCTTCATTGTAG 57.610 39.130 0.00 0.00 34.58 2.74
6538 14228 4.176271 GTGGCAATTTCCTTCATTGTAGC 58.824 43.478 0.00 0.00 34.58 3.58
6539 14229 3.831333 TGGCAATTTCCTTCATTGTAGCA 59.169 39.130 0.00 0.00 34.58 3.49
6540 14230 4.082081 TGGCAATTTCCTTCATTGTAGCAG 60.082 41.667 0.00 0.00 34.58 4.24
6541 14231 4.158394 GGCAATTTCCTTCATTGTAGCAGA 59.842 41.667 0.00 0.00 34.58 4.26
6542 14232 5.098211 GCAATTTCCTTCATTGTAGCAGAC 58.902 41.667 0.00 0.00 34.58 3.51
6543 14233 5.644644 CAATTTCCTTCATTGTAGCAGACC 58.355 41.667 0.00 0.00 0.00 3.85
6544 14234 4.365514 TTTCCTTCATTGTAGCAGACCA 57.634 40.909 0.00 0.00 0.00 4.02
6545 14235 4.574674 TTCCTTCATTGTAGCAGACCAT 57.425 40.909 0.00 0.00 0.00 3.55
6546 14236 4.574674 TCCTTCATTGTAGCAGACCATT 57.425 40.909 0.00 0.00 0.00 3.16
6547 14237 4.264253 TCCTTCATTGTAGCAGACCATTG 58.736 43.478 0.00 0.00 0.00 2.82
6548 14238 4.012374 CCTTCATTGTAGCAGACCATTGT 58.988 43.478 0.00 0.00 0.00 2.71
6549 14239 5.045942 TCCTTCATTGTAGCAGACCATTGTA 60.046 40.000 0.00 0.00 0.00 2.41
6550 14240 5.295292 CCTTCATTGTAGCAGACCATTGTAG 59.705 44.000 0.00 0.00 0.00 2.74
6551 14241 5.420725 TCATTGTAGCAGACCATTGTAGT 57.579 39.130 0.00 0.00 0.00 2.73
6552 14242 5.419542 TCATTGTAGCAGACCATTGTAGTC 58.580 41.667 0.00 0.00 34.31 2.59
6553 14243 5.187772 TCATTGTAGCAGACCATTGTAGTCT 59.812 40.000 0.00 0.00 45.45 3.24
6554 14244 6.379988 TCATTGTAGCAGACCATTGTAGTCTA 59.620 38.462 0.00 0.00 42.69 2.59
6555 14245 6.599356 TTGTAGCAGACCATTGTAGTCTAA 57.401 37.500 0.00 0.00 42.69 2.10
6556 14246 6.599356 TGTAGCAGACCATTGTAGTCTAAA 57.401 37.500 0.00 0.00 42.69 1.85
6557 14247 6.999950 TGTAGCAGACCATTGTAGTCTAAAA 58.000 36.000 0.00 0.00 42.69 1.52
6558 14248 7.446769 TGTAGCAGACCATTGTAGTCTAAAAA 58.553 34.615 0.00 0.00 42.69 1.94
6670 14389 8.661352 AGTAAATTAATGTTGCATAATTGGCC 57.339 30.769 0.00 0.00 33.28 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.335777 ACATTGCTAAGCATCAGGAATTTTC 58.664 36.000 0.00 0.00 38.76 2.29
76 77 5.927281 ACATTGCTAAGCATCAGGAATTT 57.073 34.783 0.00 0.00 38.76 1.82
77 78 5.927281 AACATTGCTAAGCATCAGGAATT 57.073 34.783 0.00 0.00 38.76 2.17
78 79 5.927281 AAACATTGCTAAGCATCAGGAAT 57.073 34.783 0.00 0.00 38.76 3.01
81 82 5.320549 AGAAAACATTGCTAAGCATCAGG 57.679 39.130 0.00 0.00 38.76 3.86
85 86 8.611654 AAAATCAAGAAAACATTGCTAAGCAT 57.388 26.923 0.00 0.00 38.76 3.79
194 201 8.450180 CAAAACTTCCAGCAAAAACAACTAAAT 58.550 29.630 0.00 0.00 0.00 1.40
198 205 5.304778 ACAAAACTTCCAGCAAAAACAACT 58.695 33.333 0.00 0.00 0.00 3.16
199 206 5.605564 ACAAAACTTCCAGCAAAAACAAC 57.394 34.783 0.00 0.00 0.00 3.32
208 216 4.851014 GCAAACAAAAACAAAACTTCCAGC 59.149 37.500 0.00 0.00 0.00 4.85
236 244 4.290093 TGACCATCCAGTCTACAAGCTAT 58.710 43.478 0.00 0.00 37.66 2.97
245 266 0.987294 CCCAGTTGACCATCCAGTCT 59.013 55.000 0.00 0.00 37.66 3.24
248 269 3.433306 TTAACCCAGTTGACCATCCAG 57.567 47.619 0.00 0.00 0.00 3.86
272 293 3.649277 CTCGCCTCCCCGTTGACTG 62.649 68.421 0.00 0.00 0.00 3.51
273 294 3.382832 CTCGCCTCCCCGTTGACT 61.383 66.667 0.00 0.00 0.00 3.41
303 324 9.458374 CATTACAACCTCGAACTTAAATTTTGT 57.542 29.630 0.00 0.00 0.00 2.83
304 325 9.458374 ACATTACAACCTCGAACTTAAATTTTG 57.542 29.630 0.00 0.00 0.00 2.44
305 326 9.458374 CACATTACAACCTCGAACTTAAATTTT 57.542 29.630 0.00 0.00 0.00 1.82
306 327 8.079809 CCACATTACAACCTCGAACTTAAATTT 58.920 33.333 0.00 0.00 0.00 1.82
308 329 6.938030 TCCACATTACAACCTCGAACTTAAAT 59.062 34.615 0.00 0.00 0.00 1.40
316 339 2.569853 ACCATCCACATTACAACCTCGA 59.430 45.455 0.00 0.00 0.00 4.04
324 347 6.262273 CCCAAGTACAATACCATCCACATTAC 59.738 42.308 0.00 0.00 0.00 1.89
328 351 3.053991 CCCCAAGTACAATACCATCCACA 60.054 47.826 0.00 0.00 0.00 4.17
330 353 2.512056 CCCCCAAGTACAATACCATCCA 59.488 50.000 0.00 0.00 0.00 3.41
337 360 8.613034 TCTAATTTACAACCCCCAAGTACAATA 58.387 33.333 0.00 0.00 0.00 1.90
338 361 7.395206 GTCTAATTTACAACCCCCAAGTACAAT 59.605 37.037 0.00 0.00 0.00 2.71
340 363 6.044637 AGTCTAATTTACAACCCCCAAGTACA 59.955 38.462 0.00 0.00 0.00 2.90
341 364 6.479006 AGTCTAATTTACAACCCCCAAGTAC 58.521 40.000 0.00 0.00 0.00 2.73
344 367 6.120220 CCTAGTCTAATTTACAACCCCCAAG 58.880 44.000 0.00 0.00 0.00 3.61
364 387 3.769844 TCAACCTCTAACTCTTGGCCTAG 59.230 47.826 8.03 8.03 0.00 3.02
369 392 8.567285 AACATATTTCAACCTCTAACTCTTGG 57.433 34.615 0.00 0.00 0.00 3.61
380 403 6.493458 AGGTGCTACAAAACATATTTCAACCT 59.507 34.615 0.00 0.00 0.00 3.50
512 558 2.093181 TGGACACCAATACGATTCCTGG 60.093 50.000 0.00 0.00 34.95 4.45
513 559 3.260475 TGGACACCAATACGATTCCTG 57.740 47.619 0.00 0.00 0.00 3.86
561 607 7.267857 GCCTACAATCCATCAAAATAGCTTTT 58.732 34.615 0.00 0.00 34.90 2.27
563 609 5.302823 GGCCTACAATCCATCAAAATAGCTT 59.697 40.000 0.00 0.00 0.00 3.74
564 610 4.829492 GGCCTACAATCCATCAAAATAGCT 59.171 41.667 0.00 0.00 0.00 3.32
565 611 4.320494 CGGCCTACAATCCATCAAAATAGC 60.320 45.833 0.00 0.00 0.00 2.97
566 612 4.216257 CCGGCCTACAATCCATCAAAATAG 59.784 45.833 0.00 0.00 0.00 1.73
567 613 4.141287 CCGGCCTACAATCCATCAAAATA 58.859 43.478 0.00 0.00 0.00 1.40
568 614 2.958355 CCGGCCTACAATCCATCAAAAT 59.042 45.455 0.00 0.00 0.00 1.82
569 615 2.025793 TCCGGCCTACAATCCATCAAAA 60.026 45.455 0.00 0.00 0.00 2.44
574 620 1.141053 GAAGTCCGGCCTACAATCCAT 59.859 52.381 0.00 0.00 0.00 3.41
580 626 1.480954 GAGAATGAAGTCCGGCCTACA 59.519 52.381 0.00 0.00 0.00 2.74
586 632 2.094700 TGACGAAGAGAATGAAGTCCGG 60.095 50.000 0.00 0.00 0.00 5.14
595 641 4.920640 ATGTATCCGTGACGAAGAGAAT 57.079 40.909 6.54 0.00 0.00 2.40
598 644 3.797256 GGAAATGTATCCGTGACGAAGAG 59.203 47.826 6.54 0.00 0.00 2.85
634 680 2.325761 CTACTCCCGTGTGAAGTTTCG 58.674 52.381 0.00 0.00 0.00 3.46
646 692 2.125106 GTGCCCAAGCTACTCCCG 60.125 66.667 0.00 0.00 40.80 5.14
648 694 1.078143 CAGGTGCCCAAGCTACTCC 60.078 63.158 0.00 0.00 40.80 3.85
649 695 1.078143 CCAGGTGCCCAAGCTACTC 60.078 63.158 0.00 0.00 40.80 2.59
655 701 0.542702 ATCAAACCCAGGTGCCCAAG 60.543 55.000 0.00 0.00 0.00 3.61
666 712 4.855340 TGAAGTCTTGGGATATCAAACCC 58.145 43.478 4.83 0.00 45.74 4.11
741 788 4.807631 AAATACCACCGCCGCCCC 62.808 66.667 0.00 0.00 0.00 5.80
742 789 3.206957 GAAATACCACCGCCGCCC 61.207 66.667 0.00 0.00 0.00 6.13
743 790 3.206957 GGAAATACCACCGCCGCC 61.207 66.667 0.00 0.00 38.79 6.13
745 792 2.893404 CGGGAAATACCACCGCCG 60.893 66.667 0.00 0.00 41.23 6.46
749 796 0.606944 TGCACACGGGAAATACCACC 60.607 55.000 0.00 0.00 41.20 4.61
750 797 0.519961 GTGCACACGGGAAATACCAC 59.480 55.000 13.17 0.00 41.20 4.16
751 798 0.398696 AGTGCACACGGGAAATACCA 59.601 50.000 21.04 0.00 41.20 3.25
752 799 1.467342 GAAGTGCACACGGGAAATACC 59.533 52.381 21.04 0.00 36.20 2.73
753 800 2.415512 GAGAAGTGCACACGGGAAATAC 59.584 50.000 21.04 0.00 36.20 1.89
754 801 2.301870 AGAGAAGTGCACACGGGAAATA 59.698 45.455 21.04 0.00 36.20 1.40
755 802 1.072331 AGAGAAGTGCACACGGGAAAT 59.928 47.619 21.04 0.00 36.20 2.17
756 803 0.468226 AGAGAAGTGCACACGGGAAA 59.532 50.000 21.04 0.00 36.20 3.13
758 805 0.827925 AGAGAGAAGTGCACACGGGA 60.828 55.000 21.04 0.00 36.20 5.14
759 806 0.034059 AAGAGAGAAGTGCACACGGG 59.966 55.000 21.04 0.00 36.20 5.28
760 807 1.795286 GAAAGAGAGAAGTGCACACGG 59.205 52.381 21.04 0.00 36.20 4.94
761 808 2.473816 TGAAAGAGAGAAGTGCACACG 58.526 47.619 21.04 0.00 36.20 4.49
762 809 4.094887 TGTTTGAAAGAGAGAAGTGCACAC 59.905 41.667 21.04 12.64 0.00 3.82
763 810 4.260985 TGTTTGAAAGAGAGAAGTGCACA 58.739 39.130 21.04 0.00 0.00 4.57
764 811 4.882671 TGTTTGAAAGAGAGAAGTGCAC 57.117 40.909 9.40 9.40 0.00 4.57
827 883 4.348168 AGGCTTCTCCTAACAAAAGACTCA 59.652 41.667 0.00 0.00 45.41 3.41
864 920 1.860709 CGTAACGCTTTTGCTTACCG 58.139 50.000 0.00 0.00 44.80 4.02
913 969 0.925221 TTTATAGGGGGCGGGGGTTT 60.925 55.000 0.00 0.00 0.00 3.27
914 970 0.703407 ATTTATAGGGGGCGGGGGTT 60.703 55.000 0.00 0.00 0.00 4.11
915 971 0.703407 AATTTATAGGGGGCGGGGGT 60.703 55.000 0.00 0.00 0.00 4.95
920 976 1.241315 CCGGCAATTTATAGGGGGCG 61.241 60.000 0.00 0.00 45.55 6.13
922 978 0.898326 GCCCGGCAATTTATAGGGGG 60.898 60.000 3.91 0.00 42.25 5.40
991 1057 0.940126 GTCTCGCCCATTGCTATGTG 59.060 55.000 7.37 0.00 38.05 3.21
1047 1113 1.171308 CCGACGACTCCTCCAGTTTA 58.829 55.000 0.00 0.00 34.41 2.01
1240 1309 1.436195 GACGCCACTTGCACAGTCAA 61.436 55.000 0.00 0.00 41.33 3.18
1245 1314 4.908687 AGCGACGCCACTTGCACA 62.909 61.111 17.79 0.00 41.33 4.57
1531 1600 4.141711 ACCAACGCATATATGAACTGGAGT 60.142 41.667 23.63 8.88 0.00 3.85
1537 1606 5.734855 AGAACACCAACGCATATATGAAC 57.265 39.130 17.10 0.00 0.00 3.18
1602 1716 3.054361 ACCCAAGCACCTAGATCGATTTT 60.054 43.478 0.00 0.00 0.00 1.82
1793 1925 5.505100 GCGCGCTCTATATATACATACATCG 59.495 44.000 26.67 0.00 0.00 3.84
1795 1927 6.313744 TGCGCGCTCTATATATACATACAT 57.686 37.500 33.29 0.00 0.00 2.29
1796 1928 5.744666 TGCGCGCTCTATATATACATACA 57.255 39.130 33.29 1.49 0.00 2.29
1808 1940 0.958822 TATCAAGGATGCGCGCTCTA 59.041 50.000 33.29 13.19 0.00 2.43
1821 1953 3.560068 GCGTGGTTTACATCCCTATCAAG 59.440 47.826 0.00 0.00 0.00 3.02
1822 1954 3.055021 TGCGTGGTTTACATCCCTATCAA 60.055 43.478 0.00 0.00 0.00 2.57
1823 1955 2.502130 TGCGTGGTTTACATCCCTATCA 59.498 45.455 0.00 0.00 0.00 2.15
1824 1956 2.870411 GTGCGTGGTTTACATCCCTATC 59.130 50.000 0.00 0.00 0.00 2.08
1825 1957 2.420967 GGTGCGTGGTTTACATCCCTAT 60.421 50.000 0.00 0.00 0.00 2.57
1826 1958 1.065998 GGTGCGTGGTTTACATCCCTA 60.066 52.381 0.00 0.00 0.00 3.53
1828 1960 1.641123 CGGTGCGTGGTTTACATCCC 61.641 60.000 0.00 0.00 0.00 3.85
1829 1961 0.952010 ACGGTGCGTGGTTTACATCC 60.952 55.000 0.00 0.00 39.18 3.51
1830 1962 0.441145 GACGGTGCGTGGTTTACATC 59.559 55.000 0.00 0.00 41.37 3.06
1831 1963 0.034337 AGACGGTGCGTGGTTTACAT 59.966 50.000 0.00 0.00 41.37 2.29
1832 1964 0.672889 TAGACGGTGCGTGGTTTACA 59.327 50.000 0.00 0.00 41.37 2.41
1833 1965 1.723003 CTTAGACGGTGCGTGGTTTAC 59.277 52.381 0.00 0.00 41.37 2.01
1834 1966 1.936203 GCTTAGACGGTGCGTGGTTTA 60.936 52.381 0.00 0.00 41.37 2.01
1835 1967 1.226030 GCTTAGACGGTGCGTGGTTT 61.226 55.000 0.00 0.00 41.37 3.27
1836 1968 1.666872 GCTTAGACGGTGCGTGGTT 60.667 57.895 0.00 0.00 41.37 3.67
1837 1969 2.048503 GCTTAGACGGTGCGTGGT 60.049 61.111 0.00 0.00 41.37 4.16
1838 1970 2.813908 GGCTTAGACGGTGCGTGG 60.814 66.667 0.00 0.00 41.37 4.94
1839 1971 2.094659 CAGGCTTAGACGGTGCGTG 61.095 63.158 0.00 0.00 41.37 5.34
1840 1972 2.095978 AACAGGCTTAGACGGTGCGT 62.096 55.000 0.00 0.00 45.10 5.24
1841 1973 0.949105 AAACAGGCTTAGACGGTGCG 60.949 55.000 0.00 0.00 0.00 5.34
1842 1974 2.088950 TAAACAGGCTTAGACGGTGC 57.911 50.000 0.00 0.00 0.00 5.01
1843 1975 2.415512 GCTTAAACAGGCTTAGACGGTG 59.584 50.000 0.00 0.00 0.00 4.94
1844 1976 2.614734 GGCTTAAACAGGCTTAGACGGT 60.615 50.000 0.00 0.00 45.03 4.83
1845 1977 2.007608 GGCTTAAACAGGCTTAGACGG 58.992 52.381 0.00 0.00 45.03 4.79
1853 1985 8.977437 AGACTGATAAGTGGGCTTAAACAGGC 62.977 46.154 18.70 17.29 44.39 4.85
1854 1986 4.589908 ACTGATAAGTGGGCTTAAACAGG 58.410 43.478 18.70 9.07 42.61 4.00
1855 1987 5.491982 AGACTGATAAGTGGGCTTAAACAG 58.508 41.667 15.78 15.78 43.17 3.16
1856 1988 5.499004 AGACTGATAAGTGGGCTTAAACA 57.501 39.130 0.00 0.00 40.22 2.83
1857 1989 6.877322 TGTTAGACTGATAAGTGGGCTTAAAC 59.123 38.462 0.00 0.00 40.22 2.01
1858 1990 7.011499 TGTTAGACTGATAAGTGGGCTTAAA 57.989 36.000 0.00 0.00 40.22 1.52
1859 1991 6.212791 ACTGTTAGACTGATAAGTGGGCTTAA 59.787 38.462 0.00 0.00 40.22 1.85
1860 1992 5.720041 ACTGTTAGACTGATAAGTGGGCTTA 59.280 40.000 0.00 0.00 40.98 3.09
1861 1993 4.532521 ACTGTTAGACTGATAAGTGGGCTT 59.467 41.667 0.00 0.00 38.66 4.35
1862 1994 4.097418 ACTGTTAGACTGATAAGTGGGCT 58.903 43.478 0.00 0.00 0.00 5.19
1863 1995 4.473477 ACTGTTAGACTGATAAGTGGGC 57.527 45.455 0.00 0.00 0.00 5.36
1864 1996 6.037786 TGAACTGTTAGACTGATAAGTGGG 57.962 41.667 0.00 0.00 0.00 4.61
1865 1997 7.378966 TCTTGAACTGTTAGACTGATAAGTGG 58.621 38.462 0.00 0.00 0.00 4.00
1866 1998 8.818141 TTCTTGAACTGTTAGACTGATAAGTG 57.182 34.615 0.00 0.00 0.00 3.16
1872 2004 9.832445 AACTTTATTCTTGAACTGTTAGACTGA 57.168 29.630 0.00 0.00 0.00 3.41
1902 2034 9.780413 GCTCAATAGTTCATTTTTCTAGGAAAG 57.220 33.333 0.00 0.00 0.00 2.62
1903 2035 9.520515 AGCTCAATAGTTCATTTTTCTAGGAAA 57.479 29.630 0.00 0.00 0.00 3.13
1923 2055 9.413048 CCCGTTTATTTATTTTTGTTAGCTCAA 57.587 29.630 0.00 0.00 0.00 3.02
1924 2056 7.542824 GCCCGTTTATTTATTTTTGTTAGCTCA 59.457 33.333 0.00 0.00 0.00 4.26
1925 2057 7.758076 AGCCCGTTTATTTATTTTTGTTAGCTC 59.242 33.333 0.00 0.00 0.00 4.09
1926 2058 7.608153 AGCCCGTTTATTTATTTTTGTTAGCT 58.392 30.769 0.00 0.00 0.00 3.32
1927 2059 7.821595 AGCCCGTTTATTTATTTTTGTTAGC 57.178 32.000 0.00 0.00 0.00 3.09
1929 2061 8.496751 GCAAAGCCCGTTTATTTATTTTTGTTA 58.503 29.630 0.00 0.00 0.00 2.41
1930 2062 7.356540 GCAAAGCCCGTTTATTTATTTTTGTT 58.643 30.769 0.00 0.00 0.00 2.83
1931 2063 6.346999 CGCAAAGCCCGTTTATTTATTTTTGT 60.347 34.615 0.00 0.00 0.00 2.83
1932 2064 6.012482 CGCAAAGCCCGTTTATTTATTTTTG 58.988 36.000 0.00 0.00 0.00 2.44
1933 2065 5.120986 CCGCAAAGCCCGTTTATTTATTTTT 59.879 36.000 0.00 0.00 0.00 1.94
1934 2066 4.627900 CCGCAAAGCCCGTTTATTTATTTT 59.372 37.500 0.00 0.00 0.00 1.82
1935 2067 4.177783 CCGCAAAGCCCGTTTATTTATTT 58.822 39.130 0.00 0.00 0.00 1.40
1936 2068 3.776340 CCGCAAAGCCCGTTTATTTATT 58.224 40.909 0.00 0.00 0.00 1.40
1937 2069 2.480587 GCCGCAAAGCCCGTTTATTTAT 60.481 45.455 0.00 0.00 0.00 1.40
1938 2070 1.135344 GCCGCAAAGCCCGTTTATTTA 60.135 47.619 0.00 0.00 0.00 1.40
1939 2071 0.389296 GCCGCAAAGCCCGTTTATTT 60.389 50.000 0.00 0.00 0.00 1.40
1940 2072 1.214325 GCCGCAAAGCCCGTTTATT 59.786 52.632 0.00 0.00 0.00 1.40
1941 2073 2.882132 GCCGCAAAGCCCGTTTAT 59.118 55.556 0.00 0.00 0.00 1.40
1942 2074 3.728636 CGCCGCAAAGCCCGTTTA 61.729 61.111 0.00 0.00 0.00 2.01
1948 2080 1.507141 ATATACAGCGCCGCAAAGCC 61.507 55.000 13.36 0.00 0.00 4.35
1949 2081 0.110644 GATATACAGCGCCGCAAAGC 60.111 55.000 13.36 0.00 0.00 3.51
1950 2082 0.161658 CGATATACAGCGCCGCAAAG 59.838 55.000 13.36 2.84 0.00 2.77
1951 2083 0.528901 ACGATATACAGCGCCGCAAA 60.529 50.000 13.36 0.00 36.95 3.68
1952 2084 1.066752 ACGATATACAGCGCCGCAA 59.933 52.632 13.36 0.00 36.95 4.85
1953 2085 1.660264 CACGATATACAGCGCCGCA 60.660 57.895 13.36 0.00 36.95 5.69
1954 2086 1.606350 GACACGATATACAGCGCCGC 61.606 60.000 2.29 0.00 36.95 6.53
1955 2087 0.317519 TGACACGATATACAGCGCCG 60.318 55.000 2.29 0.00 36.95 6.46
1956 2088 2.065993 ATGACACGATATACAGCGCC 57.934 50.000 2.29 0.00 36.95 6.53
1957 2089 5.570262 TTAAATGACACGATATACAGCGC 57.430 39.130 0.00 0.00 36.95 5.92
1958 2090 8.007821 AGATTTAAATGACACGATATACAGCG 57.992 34.615 5.17 0.00 40.09 5.18
1959 2091 9.197694 AGAGATTTAAATGACACGATATACAGC 57.802 33.333 5.17 0.00 0.00 4.40
1976 2108 9.685276 TCAAGCCATCAAAGATTAGAGATTTAA 57.315 29.630 0.00 0.00 0.00 1.52
1977 2109 9.334947 CTCAAGCCATCAAAGATTAGAGATTTA 57.665 33.333 0.00 0.00 0.00 1.40
1978 2110 7.833183 ACTCAAGCCATCAAAGATTAGAGATTT 59.167 33.333 0.00 0.00 0.00 2.17
1979 2111 7.344913 ACTCAAGCCATCAAAGATTAGAGATT 58.655 34.615 0.00 0.00 0.00 2.40
1980 2112 6.897986 ACTCAAGCCATCAAAGATTAGAGAT 58.102 36.000 0.00 0.00 0.00 2.75
1981 2113 6.305272 ACTCAAGCCATCAAAGATTAGAGA 57.695 37.500 0.00 0.00 0.00 3.10
1982 2114 6.183360 CCAACTCAAGCCATCAAAGATTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
1983 2115 5.649395 CCAACTCAAGCCATCAAAGATTAGA 59.351 40.000 0.00 0.00 0.00 2.10
1984 2116 5.416952 ACCAACTCAAGCCATCAAAGATTAG 59.583 40.000 0.00 0.00 0.00 1.73
1985 2117 5.324409 ACCAACTCAAGCCATCAAAGATTA 58.676 37.500 0.00 0.00 0.00 1.75
1986 2118 4.154942 ACCAACTCAAGCCATCAAAGATT 58.845 39.130 0.00 0.00 0.00 2.40
1990 2122 2.293122 CGAACCAACTCAAGCCATCAAA 59.707 45.455 0.00 0.00 0.00 2.69
2048 2183 0.460284 CTGCTATGTTCGCCCGTCTT 60.460 55.000 0.00 0.00 0.00 3.01
2065 2200 2.936919 TAATGGGGCAGTGCTATCTG 57.063 50.000 16.11 0.00 38.35 2.90
2066 2201 3.951563 TTTAATGGGGCAGTGCTATCT 57.048 42.857 16.11 0.00 0.00 1.98
2067 2202 5.535753 AAATTTAATGGGGCAGTGCTATC 57.464 39.130 16.11 5.56 0.00 2.08
2068 2203 8.899887 ATATAAATTTAATGGGGCAGTGCTAT 57.100 30.769 16.11 4.70 0.00 2.97
2069 2204 9.238368 GTATATAAATTTAATGGGGCAGTGCTA 57.762 33.333 16.11 2.26 0.00 3.49
2070 2205 7.094377 CGTATATAAATTTAATGGGGCAGTGCT 60.094 37.037 16.11 0.00 0.00 4.40
2071 2206 7.027161 CGTATATAAATTTAATGGGGCAGTGC 58.973 38.462 6.55 6.55 0.00 4.40
2089 2524 7.384932 TCGTTGAGAAACGGATACTCGTATATA 59.615 37.037 10.72 0.00 45.45 0.86
2090 2525 6.203530 TCGTTGAGAAACGGATACTCGTATAT 59.796 38.462 10.72 0.00 45.45 0.86
2118 2553 3.402628 AGTAATGAACGAACCACAGCT 57.597 42.857 0.00 0.00 0.00 4.24
2148 2589 7.201591 CCGTCAGTAAGTTTCTCTATACTCGAA 60.202 40.741 0.00 0.00 0.00 3.71
2156 2597 4.391216 CGACTCCGTCAGTAAGTTTCTCTA 59.609 45.833 0.00 0.00 34.41 2.43
2157 2598 3.188873 CGACTCCGTCAGTAAGTTTCTCT 59.811 47.826 0.00 0.00 34.41 3.10
2158 2599 3.188048 TCGACTCCGTCAGTAAGTTTCTC 59.812 47.826 0.00 0.00 34.41 2.87
2159 2600 3.058363 GTCGACTCCGTCAGTAAGTTTCT 60.058 47.826 8.70 0.00 34.41 2.52
2160 2601 3.232771 GTCGACTCCGTCAGTAAGTTTC 58.767 50.000 8.70 0.00 34.41 2.78
2161 2602 2.620115 TGTCGACTCCGTCAGTAAGTTT 59.380 45.455 17.92 0.00 34.41 2.66
2162 2603 2.224606 TGTCGACTCCGTCAGTAAGTT 58.775 47.619 17.92 0.00 34.41 2.66
2163 2604 1.805345 CTGTCGACTCCGTCAGTAAGT 59.195 52.381 17.92 0.00 43.48 2.24
2164 2605 2.074576 TCTGTCGACTCCGTCAGTAAG 58.925 52.381 17.92 1.37 46.66 2.34
2165 2606 2.074576 CTCTGTCGACTCCGTCAGTAA 58.925 52.381 17.92 0.00 46.66 2.24
2166 2607 1.274447 TCTCTGTCGACTCCGTCAGTA 59.726 52.381 17.92 0.00 46.66 2.74
2167 2608 0.035036 TCTCTGTCGACTCCGTCAGT 59.965 55.000 17.92 0.00 46.66 3.41
2169 2610 1.266175 GTTTCTCTGTCGACTCCGTCA 59.734 52.381 17.92 0.00 37.05 4.35
2170 2611 1.401278 GGTTTCTCTGTCGACTCCGTC 60.401 57.143 17.92 1.63 37.05 4.79
2171 2612 0.597072 GGTTTCTCTGTCGACTCCGT 59.403 55.000 17.92 0.00 37.05 4.69
2172 2613 0.882474 AGGTTTCTCTGTCGACTCCG 59.118 55.000 17.92 5.46 37.07 4.63
2173 2614 3.083293 AGTAGGTTTCTCTGTCGACTCC 58.917 50.000 17.92 7.64 0.00 3.85
2174 2615 5.876612 TTAGTAGGTTTCTCTGTCGACTC 57.123 43.478 17.92 0.00 0.00 3.36
2175 2616 5.335819 GCTTTAGTAGGTTTCTCTGTCGACT 60.336 44.000 17.92 0.00 0.00 4.18
2176 2617 4.858140 GCTTTAGTAGGTTTCTCTGTCGAC 59.142 45.833 9.11 9.11 0.00 4.20
2177 2618 4.521639 TGCTTTAGTAGGTTTCTCTGTCGA 59.478 41.667 0.00 0.00 0.00 4.20
2178 2619 4.621886 GTGCTTTAGTAGGTTTCTCTGTCG 59.378 45.833 0.00 0.00 0.00 4.35
2179 2620 4.621886 CGTGCTTTAGTAGGTTTCTCTGTC 59.378 45.833 0.00 0.00 0.00 3.51
2180 2621 4.557205 CGTGCTTTAGTAGGTTTCTCTGT 58.443 43.478 0.00 0.00 0.00 3.41
2181 2622 3.368236 GCGTGCTTTAGTAGGTTTCTCTG 59.632 47.826 0.00 0.00 0.00 3.35
2182 2623 3.006537 TGCGTGCTTTAGTAGGTTTCTCT 59.993 43.478 0.00 0.00 0.00 3.10
2190 2632 4.607955 TGTAGCTATGCGTGCTTTAGTAG 58.392 43.478 0.00 0.00 41.46 2.57
2198 2640 3.174799 GCTATTTGTAGCTATGCGTGC 57.825 47.619 0.00 0.00 39.84 5.34
2231 2673 5.356190 GGGGAAAAGGCAAGTTGTAGTATAC 59.644 44.000 4.48 0.00 43.42 1.47
2288 2749 2.039348 TCAGTTTACCTTGGGGCAGTAC 59.961 50.000 0.00 0.00 35.63 2.73
2289 2750 2.039348 GTCAGTTTACCTTGGGGCAGTA 59.961 50.000 0.00 0.00 35.63 2.74
2290 2751 1.145571 TCAGTTTACCTTGGGGCAGT 58.854 50.000 0.00 0.00 35.63 4.40
2291 2752 1.202879 TGTCAGTTTACCTTGGGGCAG 60.203 52.381 0.00 0.00 35.63 4.85
2306 2767 4.511826 GGTTCTGTTAGTGGTTCTTGTCAG 59.488 45.833 0.00 0.00 0.00 3.51
2354 2816 6.482308 AGATGGTTAACACACTTGACACTAAC 59.518 38.462 8.10 0.00 0.00 2.34
2380 2843 1.192146 TGACCTGTTCTTCTCGGGGG 61.192 60.000 0.00 0.00 35.79 5.40
2381 2844 0.037232 GTGACCTGTTCTTCTCGGGG 60.037 60.000 0.00 0.00 35.79 5.73
2506 3826 7.482654 TTCCATCATCATCGTTTGTATCTTC 57.517 36.000 0.00 0.00 0.00 2.87
2517 3837 3.425359 GCCGCTATTTTCCATCATCATCG 60.425 47.826 0.00 0.00 0.00 3.84
2520 3840 2.880268 CTGCCGCTATTTTCCATCATCA 59.120 45.455 0.00 0.00 0.00 3.07
2547 3867 5.701290 GCTAAATCCAATACTTACGCTCCAT 59.299 40.000 0.00 0.00 0.00 3.41
2554 3874 6.709397 GGTGGGTAGCTAAATCCAATACTTAC 59.291 42.308 11.77 1.19 0.00 2.34
2575 3910 2.485479 CCTATTCCCTCAATGTCGGTGG 60.485 54.545 0.00 0.00 0.00 4.61
2585 3920 3.137176 CCAGATGAAAGCCTATTCCCTCA 59.863 47.826 0.00 0.00 0.00 3.86
2626 3961 1.468520 CAGCGGATTGTACTTTGGTGG 59.531 52.381 0.00 0.00 0.00 4.61
2634 3969 0.168128 GTTGTGCCAGCGGATTGTAC 59.832 55.000 0.00 0.00 0.00 2.90
2654 3989 6.238402 GCCTATTTCGAGAGGATGTTTTTACC 60.238 42.308 12.84 0.00 34.46 2.85
2655 3990 6.539103 AGCCTATTTCGAGAGGATGTTTTTAC 59.461 38.462 12.84 0.00 34.46 2.01
2658 3993 5.104259 AGCCTATTTCGAGAGGATGTTTT 57.896 39.130 12.84 0.00 34.46 2.43
2659 3994 4.762289 AGCCTATTTCGAGAGGATGTTT 57.238 40.909 12.84 0.00 34.46 2.83
2660 3995 4.762289 AAGCCTATTTCGAGAGGATGTT 57.238 40.909 12.84 2.14 34.46 2.71
2731 6679 2.177394 TATGTTGTTTGCTCCAGCGA 57.823 45.000 0.00 0.00 45.83 4.93
2732 6680 2.987413 TTATGTTGTTTGCTCCAGCG 57.013 45.000 0.00 0.00 45.83 5.18
2733 6681 4.168760 GTGATTATGTTGTTTGCTCCAGC 58.831 43.478 0.00 0.00 42.50 4.85
2821 7771 4.740822 GGTGGGCCCAGCGATTGT 62.741 66.667 36.71 0.00 34.69 2.71
2831 7781 2.124278 GGAATTCTCCGGTGGGCC 60.124 66.667 0.00 0.00 30.03 5.80
2873 7823 1.957186 GTGTTGCTTGGTACGCGGA 60.957 57.895 12.47 0.00 0.00 5.54
2928 7890 3.863041 AGAAATTCTAGGACTTGTCCGC 58.137 45.455 13.41 0.00 34.28 5.54
3052 8112 1.273381 TGTGAGGGGTCGGGAGAAATA 60.273 52.381 0.00 0.00 42.89 1.40
3149 8210 1.374125 CGTGGCGAGACAATGGTGA 60.374 57.895 0.00 0.00 0.00 4.02
3183 8244 3.457625 TTCGTTTTGGTCCGGCCGA 62.458 57.895 30.73 10.38 41.21 5.54
3214 8275 4.944372 GCGATACTGCCGGTCCCG 62.944 72.222 1.90 0.00 39.44 5.14
3228 8289 3.449227 CCTCCCACGTAGCTGCGA 61.449 66.667 31.08 7.21 35.59 5.10
3235 8296 2.277591 CGTTGTCCCCTCCCACGTA 61.278 63.158 0.00 0.00 0.00 3.57
3289 8350 3.368571 GCCTGGTGTGCTCTTGCC 61.369 66.667 0.00 0.00 38.71 4.52
3455 8692 1.574526 CCCTTTGAGCCCCATCTGGA 61.575 60.000 0.00 0.00 37.39 3.86
3467 8704 0.914644 CCCAGATCTGAGCCCTTTGA 59.085 55.000 24.62 0.00 0.00 2.69
3476 8714 1.605992 CCTGCAAGCCCAGATCTGA 59.394 57.895 24.62 0.85 34.77 3.27
3524 8798 2.037772 GGATACTGATAGTGCTGGTGGG 59.962 54.545 0.00 0.00 0.00 4.61
3530 8804 3.031736 ACCGTTGGATACTGATAGTGCT 58.968 45.455 0.00 0.00 37.61 4.40
3532 8806 4.804139 GTGAACCGTTGGATACTGATAGTG 59.196 45.833 0.00 0.00 37.61 2.74
3533 8807 4.464951 TGTGAACCGTTGGATACTGATAGT 59.535 41.667 0.00 0.00 37.61 2.12
3536 8810 3.973206 TGTGAACCGTTGGATACTGAT 57.027 42.857 0.00 0.00 37.61 2.90
3537 8811 3.755112 TTGTGAACCGTTGGATACTGA 57.245 42.857 0.00 0.00 37.61 3.41
3538 8812 6.315144 TCATTATTGTGAACCGTTGGATACTG 59.685 38.462 0.00 0.00 37.61 2.74
3539 8813 6.411376 TCATTATTGTGAACCGTTGGATACT 58.589 36.000 0.00 0.00 37.61 2.12
3541 8815 7.362229 GGTTTCATTATTGTGAACCGTTGGATA 60.362 37.037 0.00 0.00 37.80 2.59
3542 8816 6.386654 GTTTCATTATTGTGAACCGTTGGAT 58.613 36.000 0.00 0.00 37.80 3.41
3543 8817 5.278561 GGTTTCATTATTGTGAACCGTTGGA 60.279 40.000 0.00 0.00 37.80 3.53
3762 11258 0.605589 ACTCTTCCTTCTCGTGCAGG 59.394 55.000 0.00 0.00 0.00 4.85
4269 11765 3.064987 GCTGAGCCCGTAAGCGAGA 62.065 63.158 0.00 0.00 41.33 4.04
4302 11798 3.932580 GACGTGCGAGATGGTGGCA 62.933 63.158 0.00 0.00 37.59 4.92
4707 12259 6.017400 CAAAATTGCAGGAGATTACACTGT 57.983 37.500 0.00 0.00 34.79 3.55
4755 12342 1.392510 GACTGCCGTCCGTCAATTTAC 59.607 52.381 0.00 0.00 33.98 2.01
4804 12392 1.719063 GGCCTTATCAGCCCCATGGA 61.719 60.000 15.22 0.00 45.16 3.41
4950 12538 1.003233 AGGGGCTCTTTTACCTGAACG 59.997 52.381 0.00 0.00 30.71 3.95
5009 12612 9.559958 GGTCAGTAAATTTCATCTTTACACATG 57.440 33.333 0.00 0.00 40.12 3.21
5731 13339 3.119673 TGACACGAACACAATTGCAAAGT 60.120 39.130 1.71 2.12 0.00 2.66
5755 13363 0.478072 ATTGCTTGGGGTGTGACAGA 59.522 50.000 0.00 0.00 0.00 3.41
5765 13373 3.998341 CCAACAAATCAGAATTGCTTGGG 59.002 43.478 16.97 4.97 36.45 4.12
5934 13618 7.111247 TGTCAAATCATGTCCAGTTCTTTTT 57.889 32.000 0.00 0.00 0.00 1.94
5994 13683 1.664151 CGGTCCGCCTTAAATTGTCTC 59.336 52.381 0.00 0.00 0.00 3.36
6041 13730 8.975439 GTCGTACAAAAATCGGACATTATATCT 58.025 33.333 0.00 0.00 0.00 1.98
6046 13736 4.201608 GCGTCGTACAAAAATCGGACATTA 60.202 41.667 0.00 0.00 0.00 1.90
6086 13776 3.444742 TGAGGATGCAACAAATAGGCAAG 59.555 43.478 0.00 0.00 41.43 4.01
6091 13781 4.676196 GCACCTTGAGGATGCAACAAATAG 60.676 45.833 15.21 0.00 39.95 1.73
6109 13799 5.265191 AGATATAGATACATGGACGCACCT 58.735 41.667 0.00 0.00 39.86 4.00
6134 13824 9.843334 TTTAGCAAAACCGTTTATTATTAGGTG 57.157 29.630 0.00 0.00 35.08 4.00
6529 14219 5.187772 AGACTACAATGGTCTGCTACAATGA 59.812 40.000 0.00 0.00 41.76 2.57
6558 14248 5.353956 GGAACAAAACATTGGTCTGCTTTTT 59.646 36.000 6.57 0.00 38.64 1.94
6559 14249 4.875536 GGAACAAAACATTGGTCTGCTTTT 59.124 37.500 6.57 0.00 38.64 2.27
6560 14250 4.441792 GGAACAAAACATTGGTCTGCTTT 58.558 39.130 6.57 0.00 38.64 3.51
6561 14251 3.181466 GGGAACAAAACATTGGTCTGCTT 60.181 43.478 6.57 0.00 38.64 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.