Multiple sequence alignment - TraesCS6D01G248500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G248500 chr6D 100.000 3889 0 0 1 3889 351972608 351968720 0.000000e+00 7182.0
1 TraesCS6D01G248500 chr6A 89.895 2771 149 73 855 3537 491026626 491029353 0.000000e+00 3445.0
2 TraesCS6D01G248500 chr6A 89.319 852 44 26 34 859 491025749 491026579 0.000000e+00 1026.0
3 TraesCS6D01G248500 chr6A 92.733 344 23 2 3546 3889 491030013 491030354 2.700000e-136 496.0
4 TraesCS6D01G248500 chr6A 81.905 105 19 0 1291 1395 56134499 56134603 5.350000e-14 89.8
5 TraesCS6D01G248500 chr6B 92.375 1954 74 36 1483 3393 527042990 527044911 0.000000e+00 2713.0
6 TraesCS6D01G248500 chr6B 91.369 672 34 9 1 672 527039443 527040090 0.000000e+00 898.0
7 TraesCS6D01G248500 chr6B 88.871 629 29 15 855 1468 527042161 527042763 0.000000e+00 736.0
8 TraesCS6D01G248500 chr6B 88.921 343 30 5 3546 3887 527046068 527046403 2.160000e-112 416.0
9 TraesCS6D01G248500 chr6B 86.911 191 8 10 670 859 527041915 527042089 8.520000e-47 198.0
10 TraesCS6D01G248500 chr1D 84.574 188 26 3 2353 2538 282137488 282137674 2.390000e-42 183.0
11 TraesCS6D01G248500 chr4D 82.828 198 30 4 2053 2248 390598131 390598326 1.440000e-39 174.0
12 TraesCS6D01G248500 chr4D 88.889 81 9 0 1321 1401 390597931 390598011 2.470000e-17 100.0
13 TraesCS6D01G248500 chr4B 82.828 198 30 4 2053 2248 480590889 480591084 1.440000e-39 174.0
14 TraesCS6D01G248500 chr4B 86.420 81 11 0 1321 1401 480590717 480590797 5.350000e-14 89.8
15 TraesCS6D01G248500 chr4A 82.828 198 30 4 2053 2248 72294412 72294607 1.440000e-39 174.0
16 TraesCS6D01G248500 chr4A 87.654 81 10 0 1321 1401 72294213 72294293 1.150000e-15 95.3
17 TraesCS6D01G248500 chr5B 79.621 211 41 2 2347 2556 367212000 367211791 2.420000e-32 150.0
18 TraesCS6D01G248500 chr5A 79.717 212 39 4 2347 2556 412103614 412103405 2.420000e-32 150.0
19 TraesCS6D01G248500 chrUn 81.905 105 19 0 1291 1395 20367163 20367267 5.350000e-14 89.8
20 TraesCS6D01G248500 chr2B 87.013 77 8 1 1327 1401 374241018 374240942 6.920000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G248500 chr6D 351968720 351972608 3888 True 7182.000000 7182 100.0000 1 3889 1 chr6D.!!$R1 3888
1 TraesCS6D01G248500 chr6A 491025749 491030354 4605 False 1655.666667 3445 90.6490 34 3889 3 chr6A.!!$F2 3855
2 TraesCS6D01G248500 chr6B 527039443 527046403 6960 False 992.200000 2713 89.6894 1 3887 5 chr6B.!!$F1 3886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 425 0.042967 GCTAATCTACGCAAGCACGC 60.043 55.0 0.0 0.0 45.62 5.34 F
1476 3428 0.035458 AGCAGCGGTTTCAGCTTACT 59.965 50.0 0.0 0.0 44.06 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 3665 0.312729 GGAAACAACGCCGTGGATTT 59.687 50.000 0.0 0.0 0.0 2.17 R
3278 5553 1.374125 CGTGATCGTCCAAGCACCA 60.374 57.895 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 117 0.174617 GGTCAGAAAGGAGAGAGCGG 59.825 60.000 0.00 0.00 0.00 5.52
229 244 1.683790 GGTCAAATCTGGACGACGCG 61.684 60.000 3.53 3.53 36.12 6.01
299 314 0.727398 CAACTCCCGCGAGAAAATCC 59.273 55.000 8.23 0.00 38.52 3.01
333 350 2.854522 CGATCCGCCATTAATCCCC 58.145 57.895 0.00 0.00 0.00 4.81
354 371 3.555956 CCACAGTAACACGCCATATTCTC 59.444 47.826 0.00 0.00 0.00 2.87
360 377 0.319900 CACGCCATATTCTCCGAGGG 60.320 60.000 0.00 0.00 0.00 4.30
408 425 0.042967 GCTAATCTACGCAAGCACGC 60.043 55.000 0.00 0.00 45.62 5.34
422 439 4.735132 ACGCCACATGACCGTCCG 62.735 66.667 0.00 0.00 0.00 4.79
426 446 1.356527 GCCACATGACCGTCCGTAAC 61.357 60.000 0.00 0.00 0.00 2.50
490 510 6.710597 AATCATCATATTTCAACTGCTGCT 57.289 33.333 0.00 0.00 0.00 4.24
492 512 4.271776 TCATCATATTTCAACTGCTGCTCG 59.728 41.667 0.00 0.00 0.00 5.03
494 514 1.086696 TATTTCAACTGCTGCTCGGC 58.913 50.000 0.00 0.00 0.00 5.54
496 516 1.509644 TTTCAACTGCTGCTCGGCTG 61.510 55.000 0.00 6.10 37.23 4.85
509 529 2.825836 GGCTGCTCCGGTCCATTG 60.826 66.667 0.00 0.00 0.00 2.82
510 530 3.512516 GCTGCTCCGGTCCATTGC 61.513 66.667 0.00 0.00 0.00 3.56
511 531 2.270205 CTGCTCCGGTCCATTGCT 59.730 61.111 0.00 0.00 0.00 3.91
688 2546 0.996583 TTACCCACCACCATCCCTTC 59.003 55.000 0.00 0.00 0.00 3.46
786 2645 3.347168 GGTGGGTCCGTTTTTCCG 58.653 61.111 0.00 0.00 0.00 4.30
883 2819 1.586028 GTATATAACCGGCGGGCGA 59.414 57.895 31.78 15.21 36.48 5.54
967 2904 6.451393 CGAAAGAGAAAGAAAGGAAGAGAGA 58.549 40.000 0.00 0.00 0.00 3.10
969 2906 5.405935 AGAGAAAGAAAGGAAGAGAGAGC 57.594 43.478 0.00 0.00 0.00 4.09
976 2913 2.411504 GGAAGAGAGAGCGACGCCT 61.412 63.158 17.79 13.40 0.00 5.52
1020 2957 2.464459 GGCGATGAAGGCGAGGTTG 61.464 63.158 0.00 0.00 0.00 3.77
1206 3158 0.110486 ACCCATCGGTCACTTGCTTT 59.890 50.000 0.00 0.00 38.28 3.51
1207 3159 1.247567 CCCATCGGTCACTTGCTTTT 58.752 50.000 0.00 0.00 0.00 2.27
1208 3160 1.068333 CCCATCGGTCACTTGCTTTTG 60.068 52.381 0.00 0.00 0.00 2.44
1236 3188 2.445525 TGCTTACCTGAAACCCTTCCTT 59.554 45.455 0.00 0.00 0.00 3.36
1267 3219 6.042093 TCACTCTGTTCTTCCTGTTCTTATGT 59.958 38.462 0.00 0.00 0.00 2.29
1277 3229 1.447140 TTCTTATGTCGCGGCGCTT 60.447 52.632 30.54 13.98 0.00 4.68
1281 3233 1.962092 TTATGTCGCGGCGCTTGTTC 61.962 55.000 30.54 14.79 0.00 3.18
1431 3383 3.378339 CCGCTCCGATTAATTACTTCGT 58.622 45.455 13.19 0.00 0.00 3.85
1434 3386 4.146616 CGCTCCGATTAATTACTTCGTGAG 59.853 45.833 18.71 18.71 35.34 3.51
1449 3401 0.868406 GTGAGCGTTTCCTGTCCAAG 59.132 55.000 0.00 0.00 0.00 3.61
1461 3413 6.817765 TTCCTGTCCAAGTTAATTAAGCAG 57.182 37.500 0.00 1.63 0.00 4.24
1474 3426 2.465860 TAAGCAGCGGTTTCAGCTTA 57.534 45.000 11.67 11.67 44.73 3.09
1475 3427 0.875059 AAGCAGCGGTTTCAGCTTAC 59.125 50.000 8.00 0.00 44.73 2.34
1476 3428 0.035458 AGCAGCGGTTTCAGCTTACT 59.965 50.000 0.00 0.00 44.06 2.24
1591 3761 2.101582 AGCTGAGATTTACTACCTGCCG 59.898 50.000 0.00 0.00 0.00 5.69
1639 3809 0.738412 GCAAGTTGCACATCCATGCC 60.738 55.000 22.90 0.00 45.50 4.40
1770 3963 2.158971 GCCCGGAATAAATGTTGCCATT 60.159 45.455 0.73 0.00 43.14 3.16
1792 3990 4.406173 CCTGTCACGCGCTCTCGT 62.406 66.667 5.73 0.00 44.35 4.18
1817 4015 0.745486 CGCATTCATCAGCCTCACCA 60.745 55.000 0.00 0.00 0.00 4.17
1820 4018 1.399440 CATTCATCAGCCTCACCAACG 59.601 52.381 0.00 0.00 0.00 4.10
1842 4046 8.896826 CAACGCAAAAACAAAACAAAGTTATTT 58.103 25.926 0.00 0.00 0.00 1.40
1883 4090 3.875727 CGAGGGAGAACGAGTCAATAGTA 59.124 47.826 0.00 0.00 0.00 1.82
1884 4091 4.260702 CGAGGGAGAACGAGTCAATAGTAC 60.261 50.000 0.00 0.00 0.00 2.73
1927 4135 0.390124 ACAAGAACGCCGTGGTAGAA 59.610 50.000 0.00 0.00 0.00 2.10
1938 4152 3.000773 GCCGTGGTAGAAAATAACGTACG 60.001 47.826 15.01 15.01 32.53 3.67
1939 4153 4.165779 CCGTGGTAGAAAATAACGTACGT 58.834 43.478 16.72 16.72 32.53 3.57
1941 4155 5.227184 CCGTGGTAGAAAATAACGTACGTAC 59.773 44.000 23.12 15.90 32.53 3.67
1942 4156 5.792962 CGTGGTAGAAAATAACGTACGTACA 59.207 40.000 23.12 13.21 0.00 2.90
1943 4157 6.468956 CGTGGTAGAAAATAACGTACGTACAT 59.531 38.462 23.12 14.99 0.00 2.29
1998 4215 6.746364 CACGTGACAGTTCTAAAGATAGTACC 59.254 42.308 10.90 0.00 31.71 3.34
2275 4509 1.599071 CCCACATCATGTACGCATCAC 59.401 52.381 0.00 0.00 31.99 3.06
2282 4516 0.753262 ATGTACGCATCACCCCTCTC 59.247 55.000 0.00 0.00 0.00 3.20
3086 5359 8.088981 CAGATTATTACTATGGCTACTTTCGGT 58.911 37.037 0.00 0.00 0.00 4.69
3089 5362 9.623000 ATTATTACTATGGCTACTTTCGGTTTT 57.377 29.630 0.00 0.00 0.00 2.43
3115 5390 4.370917 TCTTCAAAAGCACCATTTTCAGC 58.629 39.130 0.00 0.00 30.01 4.26
3172 5447 7.873699 ACTTCACAATACCCTATAGCCTATT 57.126 36.000 0.00 0.00 0.00 1.73
3173 5448 8.967779 ACTTCACAATACCCTATAGCCTATTA 57.032 34.615 0.00 0.00 0.00 0.98
3201 5476 1.986882 AATCAAATCATCTCGCCCCC 58.013 50.000 0.00 0.00 0.00 5.40
3202 5477 1.143813 ATCAAATCATCTCGCCCCCT 58.856 50.000 0.00 0.00 0.00 4.79
3203 5478 1.801242 TCAAATCATCTCGCCCCCTA 58.199 50.000 0.00 0.00 0.00 3.53
3204 5479 2.123589 TCAAATCATCTCGCCCCCTAA 58.876 47.619 0.00 0.00 0.00 2.69
3243 5518 4.410492 GACATTTCAAAGCATGTCGAGT 57.590 40.909 0.00 0.00 39.88 4.18
3278 5553 0.905357 ATTTCGAGGCCTGTGTAGCT 59.095 50.000 12.00 0.00 0.00 3.32
3464 6420 0.892755 ATTCGTCACGACAAGGGCTA 59.107 50.000 0.00 0.00 34.89 3.93
3482 6438 3.188460 GGCTACTTTGAATCAAACGAGCA 59.812 43.478 25.68 3.64 37.54 4.26
3491 6447 3.895232 ATCAAACGAGCACTGTAGGAT 57.105 42.857 0.00 0.00 0.00 3.24
3541 6497 7.519032 TTTTTACATTGGTCCTTTGAGTAGG 57.481 36.000 0.00 0.00 36.59 3.18
3542 6498 3.721087 ACATTGGTCCTTTGAGTAGGG 57.279 47.619 0.00 0.00 35.90 3.53
3543 6499 2.290960 ACATTGGTCCTTTGAGTAGGGC 60.291 50.000 0.00 0.00 39.26 5.19
3558 7171 3.103911 GGCACGACCTGACGAACG 61.104 66.667 0.00 0.00 37.03 3.95
3570 7183 1.203052 TGACGAACGTCCCATAGAACC 59.797 52.381 21.54 0.00 43.97 3.62
3571 7184 0.533951 ACGAACGTCCCATAGAACCC 59.466 55.000 0.00 0.00 0.00 4.11
3619 7232 2.094906 CGTACTTCTCGATGAACCACCA 60.095 50.000 0.00 0.00 0.00 4.17
3753 7366 2.422597 CCACGAACCAGATGCTTGTAA 58.577 47.619 0.00 0.00 0.00 2.41
3754 7367 2.159627 CCACGAACCAGATGCTTGTAAC 59.840 50.000 0.00 0.00 0.00 2.50
3790 7404 8.612619 CAACACAAGTTAACTTTAGATGTCAGT 58.387 33.333 18.25 7.18 35.85 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.399727 CGTGACGGGCAAAGCTTTTAG 60.400 52.381 9.53 0.00 0.00 1.85
229 244 3.723348 GCGGTTGAGCCAACGACC 61.723 66.667 10.63 7.09 44.36 4.79
299 314 2.971428 ATCGCCGCCGTTACTGATGG 62.971 60.000 0.00 0.00 37.49 3.51
333 350 3.555956 GGAGAATATGGCGTGTTACTGTG 59.444 47.826 0.00 0.00 0.00 3.66
360 377 1.657751 GGAGAAAATGGGTGCTCGCC 61.658 60.000 0.00 0.00 0.00 5.54
370 387 1.871080 CTCGGGATCGGGAGAAAATG 58.129 55.000 5.90 0.00 45.37 2.32
408 425 0.738412 GGTTACGGACGGTCATGTGG 60.738 60.000 10.76 0.00 0.00 4.17
492 512 2.825836 CAATGGACCGGAGCAGCC 60.826 66.667 9.46 1.40 0.00 4.85
494 514 0.962356 AAAGCAATGGACCGGAGCAG 60.962 55.000 9.46 0.00 0.00 4.24
496 516 1.508088 CAAAGCAATGGACCGGAGC 59.492 57.895 9.46 0.00 0.00 4.70
498 518 0.539438 AAGCAAAGCAATGGACCGGA 60.539 50.000 9.46 0.00 0.00 5.14
499 519 0.388907 CAAGCAAAGCAATGGACCGG 60.389 55.000 0.00 0.00 0.00 5.28
500 520 0.388907 CCAAGCAAAGCAATGGACCG 60.389 55.000 7.76 0.00 39.19 4.79
501 521 0.037046 CCCAAGCAAAGCAATGGACC 60.037 55.000 13.31 0.00 39.19 4.46
502 522 0.671472 GCCCAAGCAAAGCAATGGAC 60.671 55.000 13.31 1.03 39.19 4.02
503 523 1.672898 GCCCAAGCAAAGCAATGGA 59.327 52.632 13.31 0.00 39.19 3.41
504 524 4.289312 GCCCAAGCAAAGCAATGG 57.711 55.556 6.81 6.81 39.53 3.16
528 551 1.934463 CACGCACAGTGTCAGTTCC 59.066 57.895 1.61 0.00 45.51 3.62
564 587 4.478371 TGCCTCGCCTCATGCAGG 62.478 66.667 0.00 0.00 46.82 4.85
627 650 2.522680 GATGGATGGGGGCTTGGC 60.523 66.667 0.00 0.00 0.00 4.52
628 651 1.456331 GTGATGGATGGGGGCTTGG 60.456 63.158 0.00 0.00 0.00 3.61
629 652 1.456331 GGTGATGGATGGGGGCTTG 60.456 63.158 0.00 0.00 0.00 4.01
630 653 1.935400 TGGTGATGGATGGGGGCTT 60.935 57.895 0.00 0.00 0.00 4.35
631 654 2.287117 TGGTGATGGATGGGGGCT 60.287 61.111 0.00 0.00 0.00 5.19
688 2546 4.081198 AGGAGTTTATGAGCTGAACAGGAG 60.081 45.833 0.00 0.00 0.00 3.69
789 2648 3.130160 GTAGGGCCGTCGTCTCGT 61.130 66.667 0.00 0.00 0.00 4.18
851 2711 5.561919 CGGTTATATACGCGGTACCACTTTA 60.562 44.000 12.47 0.00 0.00 1.85
852 2712 4.620982 GGTTATATACGCGGTACCACTTT 58.379 43.478 12.47 0.00 0.00 2.66
883 2819 2.618045 CGGGTTCTGCCTAATGACCTTT 60.618 50.000 0.00 0.00 37.43 3.11
967 2904 3.684990 TGCTCTCAAGGCGTCGCT 61.685 61.111 18.11 0.00 0.00 4.93
969 2906 2.811317 GGTGCTCTCAAGGCGTCG 60.811 66.667 0.00 0.00 0.00 5.12
976 2913 1.005748 CGCAGTCTGGTGCTCTCAA 60.006 57.895 1.14 0.00 41.62 3.02
1165 3117 4.873129 GGAGCGGCGATCGAGCAA 62.873 66.667 28.64 0.00 42.43 3.91
1206 3158 4.429108 GTTTCAGGTAAGCAAAACTGCAA 58.571 39.130 0.00 0.00 37.25 4.08
1207 3159 3.181480 GGTTTCAGGTAAGCAAAACTGCA 60.181 43.478 0.00 0.00 37.25 4.41
1208 3160 3.381045 GGTTTCAGGTAAGCAAAACTGC 58.619 45.455 0.00 0.00 33.27 4.40
1209 3161 3.636764 AGGGTTTCAGGTAAGCAAAACTG 59.363 43.478 0.00 0.00 33.27 3.16
1210 3162 3.910989 AGGGTTTCAGGTAAGCAAAACT 58.089 40.909 0.00 0.00 33.27 2.66
1211 3163 4.500887 GGAAGGGTTTCAGGTAAGCAAAAC 60.501 45.833 0.00 0.00 34.90 2.43
1236 3188 5.253330 ACAGGAAGAACAGAGTGAAACAAA 58.747 37.500 0.00 0.00 41.43 2.83
1244 3196 6.426646 ACATAAGAACAGGAAGAACAGAGT 57.573 37.500 0.00 0.00 0.00 3.24
1277 3229 2.076100 GAACCTGCATGTGATCGAACA 58.924 47.619 0.00 0.00 0.00 3.18
1281 3233 1.431488 CCCGAACCTGCATGTGATCG 61.431 60.000 8.67 8.67 0.00 3.69
1408 3360 3.551454 CGAAGTAATTAATCGGAGCGGGA 60.551 47.826 12.00 0.00 33.15 5.14
1431 3383 0.468226 ACTTGGACAGGAAACGCTCA 59.532 50.000 0.00 0.00 0.00 4.26
1434 3386 4.499037 AATTAACTTGGACAGGAAACGC 57.501 40.909 0.00 0.00 0.00 4.84
1449 3401 3.851969 GCTGAAACCGCTGCTTAATTAAC 59.148 43.478 0.00 0.00 0.00 2.01
1486 3650 6.503524 CCGTGGATTTAACATTAAAGGATGG 58.496 40.000 3.42 1.61 36.22 3.51
1492 3656 5.154932 CAACGCCGTGGATTTAACATTAAA 58.845 37.500 0.00 0.00 37.08 1.52
1501 3665 0.312729 GGAAACAACGCCGTGGATTT 59.687 50.000 0.00 0.00 0.00 2.17
1537 3701 1.463056 GCCATGTGACGATTGACGAAA 59.537 47.619 0.00 0.00 45.77 3.46
1591 3761 5.886960 TTTTCCTCTTTAAGATGAGCAGC 57.113 39.130 0.00 0.00 0.00 5.25
1678 3869 2.985282 ATGTGGCACGCCCTGTTG 60.985 61.111 13.77 0.00 38.60 3.33
1679 3870 2.985282 CATGTGGCACGCCCTGTT 60.985 61.111 13.77 0.00 38.60 3.16
1746 3939 1.133407 GCAACATTTATTCCGGGCGAA 59.867 47.619 0.00 0.00 34.14 4.70
1770 3963 3.356639 GAGCGCGTGACAGGGATGA 62.357 63.158 8.43 0.00 0.00 2.92
1791 3989 2.513666 TGATGAATGCGGGCGGAC 60.514 61.111 0.00 0.00 0.00 4.79
1792 3990 2.203056 CTGATGAATGCGGGCGGA 60.203 61.111 0.00 0.00 0.00 5.54
1796 3994 1.153107 TGAGGCTGATGAATGCGGG 60.153 57.895 0.00 0.00 0.00 6.13
1817 4015 9.108449 GAAATAACTTTGTTTTGTTTTTGCGTT 57.892 25.926 0.00 0.00 0.00 4.84
1842 4046 6.015095 TCCCTCGTATACTCTGACGTATTAGA 60.015 42.308 0.56 0.00 40.00 2.10
1915 4122 1.994779 ACGTTATTTTCTACCACGGCG 59.005 47.619 4.80 4.80 35.14 6.46
1965 4179 6.578020 TTAGAACTGTCACGTGTTTGTTAG 57.422 37.500 16.51 8.38 0.00 2.34
1966 4180 6.812656 TCTTTAGAACTGTCACGTGTTTGTTA 59.187 34.615 16.51 2.70 0.00 2.41
2041 4275 2.050714 CAGCTGCAACGCCACAAG 60.051 61.111 0.00 0.00 0.00 3.16
2101 4335 2.125350 GCTGCCCAGGAACTCGAG 60.125 66.667 11.84 11.84 34.60 4.04
2275 4509 3.721706 GTGGCAGTGGGAGAGGGG 61.722 72.222 0.00 0.00 0.00 4.79
2282 4516 4.275508 AGTGGCAGTGGCAGTGGG 62.276 66.667 24.96 0.00 40.26 4.61
3089 5362 7.626028 GCTGAAAATGGTGCTTTTGAAGAAAAA 60.626 33.333 0.00 0.00 36.34 1.94
3093 5368 4.141981 TGCTGAAAATGGTGCTTTTGAAGA 60.142 37.500 0.00 0.00 0.00 2.87
3096 5371 3.815856 TGCTGAAAATGGTGCTTTTGA 57.184 38.095 0.00 0.00 0.00 2.69
3115 5390 3.250762 TCGAGCACTGGAACAAAATCTTG 59.749 43.478 0.00 0.00 38.70 3.02
3172 5447 7.331934 GGCGAGATGATTTGATTAAGCTGTATA 59.668 37.037 0.00 0.00 0.00 1.47
3173 5448 6.148480 GGCGAGATGATTTGATTAAGCTGTAT 59.852 38.462 0.00 0.00 0.00 2.29
3243 5518 6.592607 GCCTCGAAATCCCGTGATTAATATTA 59.407 38.462 0.00 0.00 40.34 0.98
3278 5553 1.374125 CGTGATCGTCCAAGCACCA 60.374 57.895 0.00 0.00 0.00 4.17
3454 6410 5.461526 GTTTGATTCAAAGTAGCCCTTGTC 58.538 41.667 12.02 0.00 33.82 3.18
3455 6411 4.023193 CGTTTGATTCAAAGTAGCCCTTGT 60.023 41.667 12.02 0.00 33.82 3.16
3464 6420 3.627577 ACAGTGCTCGTTTGATTCAAAGT 59.372 39.130 12.02 1.92 33.82 2.66
3482 6438 8.655935 ATTTCAATCCTCAAAAATCCTACAGT 57.344 30.769 0.00 0.00 0.00 3.55
3528 6484 0.606604 TCGTGCCCTACTCAAAGGAC 59.393 55.000 0.00 0.00 39.15 3.85
3537 6493 1.870055 TTCGTCAGGTCGTGCCCTAC 61.870 60.000 0.00 0.00 38.26 3.18
3539 6495 2.915659 TTCGTCAGGTCGTGCCCT 60.916 61.111 0.00 0.00 38.26 5.19
3540 6496 2.737376 GTTCGTCAGGTCGTGCCC 60.737 66.667 0.00 0.00 38.26 5.36
3541 6497 3.103911 CGTTCGTCAGGTCGTGCC 61.104 66.667 0.00 0.00 37.58 5.01
3542 6498 2.354305 ACGTTCGTCAGGTCGTGC 60.354 61.111 0.00 0.00 35.24 5.34
3543 6499 1.728426 GGACGTTCGTCAGGTCGTG 60.728 63.158 23.25 0.00 40.64 4.35
3558 7171 1.962100 CTACTCCGGGTTCTATGGGAC 59.038 57.143 0.00 0.00 0.00 4.46
3570 7183 4.514577 CAGCGTGCCCTACTCCGG 62.515 72.222 0.00 0.00 0.00 5.14
3571 7184 4.514577 CCAGCGTGCCCTACTCCG 62.515 72.222 0.00 0.00 0.00 4.63
3619 7232 6.154534 GTGGCCCATTTTAGATCCTTAACTTT 59.845 38.462 0.00 0.00 0.00 2.66
3739 7352 5.451798 CCACTTTTTGTTACAAGCATCTGGT 60.452 40.000 0.00 0.00 0.00 4.00
3753 7366 3.676291 ACTTGTGTTGCCACTTTTTGT 57.324 38.095 0.00 0.00 42.34 2.83
3754 7367 5.637387 AGTTAACTTGTGTTGCCACTTTTTG 59.363 36.000 1.12 0.00 42.34 2.44
3790 7404 7.095397 CGTGATGTAAACTTAAGATGTGTTCCA 60.095 37.037 10.09 0.00 0.00 3.53
3814 7428 6.140110 CACGGTCATTTCAAACTATTTTCGT 58.860 36.000 0.00 0.00 0.00 3.85
3823 7437 4.022464 TGTTGACACGGTCATTTCAAAC 57.978 40.909 7.43 3.44 42.40 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.