Multiple sequence alignment - TraesCS6D01G248400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G248400 chr6D 100.000 6900 0 0 1 6900 351754748 351747849 0.000000e+00 12743
1 TraesCS6D01G248400 chr6A 96.021 5253 140 33 1686 6900 491564325 491569546 0.000000e+00 8479
2 TraesCS6D01G248400 chr6A 95.018 1626 69 6 1 1622 491562409 491564026 0.000000e+00 2543
3 TraesCS6D01G248400 chr6B 96.094 3303 93 13 1684 4962 527566529 527569819 0.000000e+00 5352
4 TraesCS6D01G248400 chr6B 95.106 1655 44 13 5026 6648 527571254 527572903 0.000000e+00 2573
5 TraesCS6D01G248400 chr6B 95.512 1337 51 6 253 1581 527564761 527566096 0.000000e+00 2128
6 TraesCS6D01G248400 chr6B 96.863 255 7 1 6647 6900 527573062 527573316 6.400000e-115 425
7 TraesCS6D01G248400 chr6B 88.152 211 15 4 1 211 527564561 527564761 6.910000e-60 243
8 TraesCS6D01G248400 chr3A 89.286 140 12 3 1619 1757 51453017 51452880 9.200000e-39 172
9 TraesCS6D01G248400 chr5D 88.372 129 12 3 1630 1757 454025036 454025162 1.200000e-32 152
10 TraesCS6D01G248400 chr2D 87.786 131 15 1 1629 1759 592408686 592408557 1.200000e-32 152
11 TraesCS6D01G248400 chr2D 88.679 106 10 2 1650 1754 347802969 347803073 2.020000e-25 128
12 TraesCS6D01G248400 chr3B 83.125 160 16 8 1630 1788 482482105 482482254 1.210000e-27 135
13 TraesCS6D01G248400 chr3B 80.556 144 16 8 1618 1759 59214271 59214404 4.400000e-17 100
14 TraesCS6D01G248400 chr2A 85.156 128 17 2 1633 1759 31357323 31357197 5.620000e-26 130
15 TraesCS6D01G248400 chr2A 80.000 145 25 4 1615 1757 3400862 3400720 3.400000e-18 104
16 TraesCS6D01G248400 chr2B 81.679 131 22 2 1630 1759 47378571 47378700 2.630000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G248400 chr6D 351747849 351754748 6899 True 12743.0 12743 100.0000 1 6900 1 chr6D.!!$R1 6899
1 TraesCS6D01G248400 chr6A 491562409 491569546 7137 False 5511.0 8479 95.5195 1 6900 2 chr6A.!!$F1 6899
2 TraesCS6D01G248400 chr6B 527564561 527573316 8755 False 2144.2 5352 94.3454 1 6900 5 chr6B.!!$F1 6899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.169009 GAGCGCACTGGGTTGATTTC 59.831 55.000 11.47 0.00 0.00 2.17 F
947 1000 0.259065 ATACAGGTCGAGAGGAGGCA 59.741 55.000 0.00 0.00 0.00 4.75 F
1653 1706 0.178903 TTGCTCTGGTACACTCCCCT 60.179 55.000 0.00 0.00 0.00 4.79 F
1654 1707 0.708209 TGCTCTGGTACACTCCCCTA 59.292 55.000 0.00 0.00 0.00 3.53 F
1656 1709 1.063867 GCTCTGGTACACTCCCCTAGA 60.064 57.143 0.00 0.00 0.00 2.43 F
2288 2694 1.609072 GAACAAGGTGGGCTGAAGTTC 59.391 52.381 0.00 0.00 0.00 3.01 F
3945 4353 1.477553 ATGAAAATGGGTGCTCGCAT 58.522 45.000 12.06 12.06 46.65 4.73 F
5157 6964 0.957395 AGGAAGGTGCTGTGCGAATG 60.957 55.000 0.00 0.00 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1687 0.178903 AGGGGAGTGTACCAGAGCAA 60.179 55.000 0.00 0.0 0.00 3.91 R
1972 2378 0.522626 TGCAGCGTGATTTGGATGTG 59.477 50.000 0.00 0.0 0.00 3.21 R
2789 3195 2.854777 GCTACACTCAACTCATACAGCG 59.145 50.000 0.00 0.0 0.00 5.18 R
3078 3486 3.778629 GGGTCAGTTACTCCCTGGAAATA 59.221 47.826 2.21 0.0 38.29 1.40 R
3101 3509 5.921962 AGAGCATTCCGATATACAGCATA 57.078 39.130 0.00 0.0 0.00 3.14 R
4260 4669 3.385755 AGAGCCACAAGACATTTGCTTTT 59.614 39.130 0.00 0.0 0.00 2.27 R
5546 7354 1.074405 ACAGGATCAGTTGTGCCACAT 59.926 47.619 0.00 0.0 0.00 3.21 R
6560 8399 0.734889 ATTCGAGCATTTGGGCTTCG 59.265 50.000 0.00 0.0 45.99 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.041979 AGCTGGAGTTGTTGGTGATAATTTTT 59.958 34.615 0.00 0.00 0.00 1.94
163 164 7.496591 ACTTTTGAGTAACCAAGTTCGTGAATA 59.503 33.333 0.00 0.00 0.00 1.75
164 165 7.972832 TTTGAGTAACCAAGTTCGTGAATAT 57.027 32.000 0.00 0.00 0.00 1.28
174 175 3.871594 AGTTCGTGAATATACCTGCTTGC 59.128 43.478 0.00 0.00 0.00 4.01
188 189 2.217750 TGCTTGCCGCGTAATATTCAT 58.782 42.857 4.92 0.00 43.27 2.57
196 197 4.201724 GCCGCGTAATATTCATCATTCTCC 60.202 45.833 4.92 0.00 0.00 3.71
199 200 5.003872 CGCGTAATATTCATCATTCTCCGAG 59.996 44.000 0.00 0.00 0.00 4.63
210 211 4.379243 CTCCGAGCGCACTGGGTT 62.379 66.667 11.47 0.00 42.21 4.11
211 212 4.680237 TCCGAGCGCACTGGGTTG 62.680 66.667 11.47 0.00 42.21 3.77
212 213 4.680237 CCGAGCGCACTGGGTTGA 62.680 66.667 11.47 0.00 37.04 3.18
213 214 2.434884 CGAGCGCACTGGGTTGAT 60.435 61.111 11.47 0.00 0.00 2.57
214 215 2.034879 CGAGCGCACTGGGTTGATT 61.035 57.895 11.47 0.00 0.00 2.57
215 216 1.577328 CGAGCGCACTGGGTTGATTT 61.577 55.000 11.47 0.00 0.00 2.17
216 217 0.169009 GAGCGCACTGGGTTGATTTC 59.831 55.000 11.47 0.00 0.00 2.17
217 218 1.154225 GCGCACTGGGTTGATTTCG 60.154 57.895 0.30 0.00 0.00 3.46
218 219 1.852067 GCGCACTGGGTTGATTTCGT 61.852 55.000 0.30 0.00 0.00 3.85
219 220 1.434555 CGCACTGGGTTGATTTCGTA 58.565 50.000 0.00 0.00 0.00 3.43
220 221 1.127951 CGCACTGGGTTGATTTCGTAC 59.872 52.381 0.00 0.00 0.00 3.67
221 222 2.423577 GCACTGGGTTGATTTCGTACT 58.576 47.619 0.00 0.00 0.00 2.73
222 223 3.592059 GCACTGGGTTGATTTCGTACTA 58.408 45.455 0.00 0.00 0.00 1.82
223 224 3.617263 GCACTGGGTTGATTTCGTACTAG 59.383 47.826 0.00 0.00 0.00 2.57
224 225 4.619863 GCACTGGGTTGATTTCGTACTAGA 60.620 45.833 0.00 0.00 0.00 2.43
225 226 5.661458 CACTGGGTTGATTTCGTACTAGAT 58.339 41.667 0.00 0.00 0.00 1.98
226 227 5.749109 CACTGGGTTGATTTCGTACTAGATC 59.251 44.000 0.00 0.00 0.00 2.75
227 228 4.928601 TGGGTTGATTTCGTACTAGATCG 58.071 43.478 0.00 0.53 0.00 3.69
228 229 4.400251 TGGGTTGATTTCGTACTAGATCGT 59.600 41.667 0.00 0.00 0.00 3.73
229 230 5.105635 TGGGTTGATTTCGTACTAGATCGTT 60.106 40.000 0.00 0.00 0.00 3.85
230 231 5.458126 GGGTTGATTTCGTACTAGATCGTTC 59.542 44.000 0.00 1.84 0.00 3.95
231 232 6.264088 GGTTGATTTCGTACTAGATCGTTCT 58.736 40.000 0.00 0.97 35.90 3.01
232 233 7.412853 GGTTGATTTCGTACTAGATCGTTCTA 58.587 38.462 0.00 3.30 33.17 2.10
233 234 8.074972 GGTTGATTTCGTACTAGATCGTTCTAT 58.925 37.037 3.74 0.00 33.98 1.98
234 235 9.448294 GTTGATTTCGTACTAGATCGTTCTATT 57.552 33.333 3.74 1.68 33.98 1.73
238 239 8.539062 TTTCGTACTAGATCGTTCTATTTTCG 57.461 34.615 3.74 7.42 33.98 3.46
239 240 7.468922 TCGTACTAGATCGTTCTATTTTCGA 57.531 36.000 3.74 9.15 33.98 3.71
240 241 7.562412 TCGTACTAGATCGTTCTATTTTCGAG 58.438 38.462 3.74 0.00 37.04 4.04
241 242 7.436376 TCGTACTAGATCGTTCTATTTTCGAGA 59.564 37.037 3.74 0.00 37.04 4.04
242 243 8.060679 CGTACTAGATCGTTCTATTTTCGAGAA 58.939 37.037 3.74 0.00 37.04 2.87
243 244 9.881529 GTACTAGATCGTTCTATTTTCGAGAAT 57.118 33.333 6.42 6.42 35.46 2.40
245 246 9.453325 ACTAGATCGTTCTATTTTCGAGAATTC 57.547 33.333 6.49 0.00 35.46 2.17
246 247 9.672086 CTAGATCGTTCTATTTTCGAGAATTCT 57.328 33.333 7.95 7.95 35.46 2.40
247 248 8.568732 AGATCGTTCTATTTTCGAGAATTCTC 57.431 34.615 23.20 23.20 35.46 2.87
248 249 8.410141 AGATCGTTCTATTTTCGAGAATTCTCT 58.590 33.333 28.28 14.84 40.75 3.10
249 250 8.934507 ATCGTTCTATTTTCGAGAATTCTCTT 57.065 30.769 28.28 13.13 40.75 2.85
250 251 8.395940 TCGTTCTATTTTCGAGAATTCTCTTC 57.604 34.615 28.28 8.30 40.75 2.87
251 252 7.218393 TCGTTCTATTTTCGAGAATTCTCTTCG 59.782 37.037 28.28 18.74 40.75 3.79
268 313 4.478699 TCTTCGTATGTTGTGGTAGAACG 58.521 43.478 0.00 0.00 0.00 3.95
275 320 4.877378 TGTTGTGGTAGAACGGTAGAAT 57.123 40.909 0.00 0.00 0.00 2.40
357 408 6.801575 TGTTCCATAGTTTTGACCAGTTTTC 58.198 36.000 0.00 0.00 0.00 2.29
410 461 3.641437 TGCTATTTTTGCGCTTGTTCT 57.359 38.095 9.73 0.00 0.00 3.01
499 550 4.201724 GCGACAACTCTAGGTGCTTAATTG 60.202 45.833 0.00 0.00 0.00 2.32
578 629 8.474025 TGTGATTTGGTCTTAACTTTTTCATGT 58.526 29.630 0.00 0.00 0.00 3.21
580 631 7.925483 TGATTTGGTCTTAACTTTTTCATGTGG 59.075 33.333 0.00 0.00 0.00 4.17
587 638 8.379902 GTCTTAACTTTTTCATGTGGTGTTTTG 58.620 33.333 0.00 0.00 0.00 2.44
655 708 2.676342 GGTGACTTATTTGCACCCTACG 59.324 50.000 0.00 0.00 44.86 3.51
662 715 1.803334 TTTGCACCCTACGACATGTC 58.197 50.000 16.21 16.21 0.00 3.06
677 730 2.942376 ACATGTCGTGTGTGTGAACAAT 59.058 40.909 0.00 0.00 40.28 2.71
688 741 5.221621 TGTGTGTGAACAATCCAGTGAGATA 60.222 40.000 0.00 0.00 0.00 1.98
698 751 5.957771 ATCCAGTGAGATAGTGCCTTAAA 57.042 39.130 0.00 0.00 0.00 1.52
734 787 3.820467 TCTGGAAAAGTAGCACACAATGG 59.180 43.478 0.00 0.00 0.00 3.16
784 837 2.821969 CTGCATGTAGCCTCCACTTTTT 59.178 45.455 0.00 0.00 44.83 1.94
794 847 7.552687 TGTAGCCTCCACTTTTTGATGTAATAG 59.447 37.037 0.00 0.00 0.00 1.73
940 993 6.349243 TCCTTTTGTTTATACAGGTCGAGA 57.651 37.500 0.00 0.00 35.28 4.04
947 1000 0.259065 ATACAGGTCGAGAGGAGGCA 59.741 55.000 0.00 0.00 0.00 4.75
951 1004 1.142748 GGTCGAGAGGAGGCACATG 59.857 63.158 0.00 0.00 0.00 3.21
1101 1154 1.547372 GGCAAGGTTACGTAGGAGTCA 59.453 52.381 0.00 0.00 0.00 3.41
1282 1335 1.272212 AGTAAAATTGCCCCTGTTGCG 59.728 47.619 0.00 0.00 0.00 4.85
1347 1400 9.178758 GATTATTTTCTTCTCTTAAGGCAAGGA 57.821 33.333 1.85 0.00 34.76 3.36
1434 1487 1.136110 GATTAATTTGCGTGGGGGTGG 59.864 52.381 0.00 0.00 0.00 4.61
1482 1535 6.858993 GTCGTATTAAGTGGCAAATGTTCAAA 59.141 34.615 0.00 0.00 0.00 2.69
1531 1584 9.569122 TTTAAACTTTTAGACCTAAGTGATGCT 57.431 29.630 0.00 0.00 34.95 3.79
1558 1611 4.695455 GCACAAGTTTCAGAGCTTATGGTA 59.305 41.667 0.00 0.00 0.00 3.25
1598 1651 6.648879 AAAACTAAGCAATTGAAGTGGCTA 57.351 33.333 10.34 0.00 35.11 3.93
1650 1703 3.067833 GAGTTTTGCTCTGGTACACTCC 58.932 50.000 0.00 0.00 40.98 3.85
1651 1704 2.152016 GTTTTGCTCTGGTACACTCCC 58.848 52.381 0.00 0.00 0.00 4.30
1652 1705 0.690762 TTTGCTCTGGTACACTCCCC 59.309 55.000 0.00 0.00 0.00 4.81
1653 1706 0.178903 TTGCTCTGGTACACTCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
1654 1707 0.708209 TGCTCTGGTACACTCCCCTA 59.292 55.000 0.00 0.00 0.00 3.53
1655 1708 1.342076 TGCTCTGGTACACTCCCCTAG 60.342 57.143 0.00 0.00 0.00 3.02
1656 1709 1.063867 GCTCTGGTACACTCCCCTAGA 60.064 57.143 0.00 0.00 0.00 2.43
1657 1710 2.623502 GCTCTGGTACACTCCCCTAGAA 60.624 54.545 0.00 0.00 0.00 2.10
1658 1711 3.709587 CTCTGGTACACTCCCCTAGAAA 58.290 50.000 0.00 0.00 0.00 2.52
1659 1712 4.094476 CTCTGGTACACTCCCCTAGAAAA 58.906 47.826 0.00 0.00 0.00 2.29
1660 1713 4.094476 TCTGGTACACTCCCCTAGAAAAG 58.906 47.826 0.00 0.00 0.00 2.27
1661 1714 3.838903 CTGGTACACTCCCCTAGAAAAGT 59.161 47.826 0.00 0.00 0.00 2.66
1662 1715 4.237018 TGGTACACTCCCCTAGAAAAGTT 58.763 43.478 0.00 0.00 0.00 2.66
1663 1716 4.661709 TGGTACACTCCCCTAGAAAAGTTT 59.338 41.667 0.00 0.00 0.00 2.66
1664 1717 5.845614 TGGTACACTCCCCTAGAAAAGTTTA 59.154 40.000 0.00 0.00 0.00 2.01
1665 1718 6.169094 GGTACACTCCCCTAGAAAAGTTTAC 58.831 44.000 0.00 0.00 0.00 2.01
1666 1719 5.899631 ACACTCCCCTAGAAAAGTTTACA 57.100 39.130 0.00 0.00 0.00 2.41
1667 1720 5.866207 ACACTCCCCTAGAAAAGTTTACAG 58.134 41.667 0.00 0.00 0.00 2.74
1668 1721 5.605488 ACACTCCCCTAGAAAAGTTTACAGA 59.395 40.000 0.00 0.00 0.00 3.41
1669 1722 5.932883 CACTCCCCTAGAAAAGTTTACAGAC 59.067 44.000 0.00 0.00 0.00 3.51
1670 1723 5.845065 ACTCCCCTAGAAAAGTTTACAGACT 59.155 40.000 0.00 0.00 0.00 3.24
1671 1724 6.329460 ACTCCCCTAGAAAAGTTTACAGACTT 59.671 38.462 0.00 0.00 41.44 3.01
1672 1725 6.766429 TCCCCTAGAAAAGTTTACAGACTTC 58.234 40.000 0.00 0.00 38.86 3.01
1673 1726 5.638234 CCCCTAGAAAAGTTTACAGACTTCG 59.362 44.000 0.00 0.00 38.86 3.79
1674 1727 6.453092 CCCTAGAAAAGTTTACAGACTTCGA 58.547 40.000 0.00 0.00 38.86 3.71
1675 1728 7.097834 CCCTAGAAAAGTTTACAGACTTCGAT 58.902 38.462 0.00 0.00 38.86 3.59
1676 1729 7.063544 CCCTAGAAAAGTTTACAGACTTCGATG 59.936 40.741 0.00 0.00 38.86 3.84
1677 1730 6.229561 AGAAAAGTTTACAGACTTCGATGC 57.770 37.500 0.00 0.00 38.86 3.91
1678 1731 5.758296 AGAAAAGTTTACAGACTTCGATGCA 59.242 36.000 0.00 0.00 38.86 3.96
1679 1732 5.597813 AAAGTTTACAGACTTCGATGCAG 57.402 39.130 0.00 0.00 38.86 4.41
1680 1733 4.521130 AGTTTACAGACTTCGATGCAGA 57.479 40.909 0.00 0.00 0.00 4.26
1681 1734 5.078411 AGTTTACAGACTTCGATGCAGAT 57.922 39.130 0.00 0.00 0.00 2.90
1682 1735 5.482908 AGTTTACAGACTTCGATGCAGATT 58.517 37.500 0.00 0.00 0.00 2.40
1706 2107 8.855804 TTAAAGGTGGAGATTAGAAGATACCT 57.144 34.615 0.00 0.00 38.85 3.08
1707 2108 7.757242 AAAGGTGGAGATTAGAAGATACCTT 57.243 36.000 0.00 0.00 46.13 3.50
1757 2158 4.158949 TGATCTCTTGTTTGATGCATTGGG 59.841 41.667 0.00 0.00 0.00 4.12
1758 2159 3.765381 TCTCTTGTTTGATGCATTGGGA 58.235 40.909 0.00 0.00 0.00 4.37
1759 2160 3.507233 TCTCTTGTTTGATGCATTGGGAC 59.493 43.478 0.00 0.00 0.00 4.46
1760 2161 3.499338 TCTTGTTTGATGCATTGGGACT 58.501 40.909 0.00 0.00 0.00 3.85
1761 2162 3.896888 TCTTGTTTGATGCATTGGGACTT 59.103 39.130 0.00 0.00 0.00 3.01
1762 2163 4.344679 TCTTGTTTGATGCATTGGGACTTT 59.655 37.500 0.00 0.00 0.00 2.66
1763 2164 3.992643 TGTTTGATGCATTGGGACTTTG 58.007 40.909 0.00 0.00 0.00 2.77
1764 2165 3.244146 TGTTTGATGCATTGGGACTTTGG 60.244 43.478 0.00 0.00 0.00 3.28
1805 2206 6.741448 TTAGTTTATTTGCGAGTTTTGTGC 57.259 33.333 0.00 0.00 0.00 4.57
1806 2207 4.677584 AGTTTATTTGCGAGTTTTGTGCA 58.322 34.783 0.00 0.00 36.72 4.57
1851 2252 5.006153 ACACAAAACAAGCTTTTAGACCC 57.994 39.130 0.00 0.00 0.00 4.46
1885 2291 3.141398 TGCACAAGTTTAGGAGCTTCTG 58.859 45.455 4.19 0.00 0.00 3.02
1888 2294 4.802918 GCACAAGTTTAGGAGCTTCTGGTA 60.803 45.833 4.19 0.00 0.00 3.25
1889 2295 5.305585 CACAAGTTTAGGAGCTTCTGGTAA 58.694 41.667 4.19 0.00 0.00 2.85
1928 2334 5.963176 AAAACAAATCCAATGAAATGGCC 57.037 34.783 0.00 0.00 40.46 5.36
2128 2534 3.314080 TGACGTAGCAAACCTTTTGGAAG 59.686 43.478 0.00 0.00 44.07 3.46
2166 2572 3.882888 ACCAAATCGTCTGTCATTTGTGT 59.117 39.130 4.82 1.10 38.02 3.72
2201 2607 2.975851 CGCTGAGAAAATGTGTGCTTTC 59.024 45.455 0.00 0.00 32.72 2.62
2288 2694 1.609072 GAACAAGGTGGGCTGAAGTTC 59.391 52.381 0.00 0.00 0.00 3.01
2329 2735 1.679944 CCGTCTTGCTGAATGGTCCAT 60.680 52.381 0.00 0.00 0.00 3.41
2410 2816 4.453478 CAGAGCTGTGTTTGTCATGTACAT 59.547 41.667 1.41 1.41 38.10 2.29
2532 2938 4.473196 TGTCTTCCAGCAAGGTATATGGAA 59.527 41.667 5.47 5.47 46.80 3.53
2662 3068 6.012745 AGAAGCAAATGGAACTTGAAGGTAT 58.987 36.000 0.00 0.00 0.00 2.73
2663 3069 5.649782 AGCAAATGGAACTTGAAGGTATG 57.350 39.130 0.00 0.00 0.00 2.39
2776 3182 5.362556 ACGGCAACAATATATGATTGCTC 57.637 39.130 23.40 16.34 41.59 4.26
2789 3195 4.445452 TGATTGCTCTGCATTTCCTTTC 57.555 40.909 0.00 0.00 38.76 2.62
2914 3322 5.763698 AGATGATCTTATCTGTTGCATGTGG 59.236 40.000 0.00 0.00 36.12 4.17
2932 3340 9.360901 TGCATGTGGTACATTTATTTATGGTAT 57.639 29.630 0.00 0.00 44.52 2.73
2933 3341 9.624697 GCATGTGGTACATTTATTTATGGTATG 57.375 33.333 0.00 0.00 44.52 2.39
3057 3465 4.535526 TTCACATCCTTCATTGTCGAGA 57.464 40.909 0.00 0.00 0.00 4.04
3077 3485 8.905702 GTCGAGAACTAACTGTTTATTTTCGTA 58.094 33.333 19.31 10.35 39.30 3.43
3078 3486 9.630098 TCGAGAACTAACTGTTTATTTTCGTAT 57.370 29.630 19.31 0.00 39.30 3.06
3181 3589 6.707290 ACTTGTACAGGTGCATGATTAGTAA 58.293 36.000 10.20 0.00 0.00 2.24
3352 3760 4.378459 CCAGATTTTGAGAAAGTGGTACGC 60.378 45.833 0.00 0.00 40.45 4.42
3769 4177 4.696479 ACCATTACTGCCTTATGAGGAG 57.304 45.455 7.93 4.73 46.74 3.69
3945 4353 1.477553 ATGAAAATGGGTGCTCGCAT 58.522 45.000 12.06 12.06 46.65 4.73
4006 4414 4.804139 AGCATATGTAAACGTGACTGCTAC 59.196 41.667 11.91 0.05 36.98 3.58
4260 4669 3.885724 TGGAATAGTCGATGCTGTCAA 57.114 42.857 0.00 0.00 0.00 3.18
4355 4764 7.235399 TCCCATACTGCAAGATTCACATAGATA 59.765 37.037 0.00 0.00 37.43 1.98
4526 4935 6.652900 TCTTTATGTTGCTGTACTGTATTGCA 59.347 34.615 11.70 11.70 0.00 4.08
4578 4987 3.396260 TTGTAGGAGTGCACAAGTACC 57.604 47.619 21.04 13.34 31.29 3.34
4596 5005 3.990959 ACCAACAGAAGGATCTTCTCC 57.009 47.619 7.16 0.00 45.33 3.71
4647 5056 7.015226 TCCTCAAACTACAATCATTAATGCG 57.985 36.000 10.76 4.44 0.00 4.73
4651 5060 7.395645 TCAAACTACAATCATTAATGCGTACG 58.604 34.615 11.84 11.84 0.00 3.67
4855 5264 5.376625 GCCACTCATGTATATTTCTTCCCA 58.623 41.667 0.00 0.00 0.00 4.37
4858 5267 7.689313 GCCACTCATGTATATTTCTTCCCACTA 60.689 40.741 0.00 0.00 0.00 2.74
4951 6639 6.611613 AATCTCAGAGGATTTGTCAGTGTA 57.388 37.500 0.00 0.00 32.69 2.90
5004 6692 3.788227 AATTTGCAGTGTACCTGGAGA 57.212 42.857 0.00 6.16 42.96 3.71
5064 6865 2.842496 TGCTGGAATCCTCAGTTCATCT 59.158 45.455 0.00 0.00 34.89 2.90
5065 6866 4.033009 TGCTGGAATCCTCAGTTCATCTA 58.967 43.478 0.00 0.00 34.89 1.98
5067 6868 5.840693 TGCTGGAATCCTCAGTTCATCTATA 59.159 40.000 0.00 0.00 34.89 1.31
5069 6870 7.675619 TGCTGGAATCCTCAGTTCATCTATATA 59.324 37.037 0.00 0.00 34.89 0.86
5070 6871 8.703743 GCTGGAATCCTCAGTTCATCTATATAT 58.296 37.037 0.00 0.00 34.89 0.86
5140 6947 6.485830 TCTATTTCACCTTCACAGGATAGG 57.514 41.667 0.00 0.00 44.19 2.57
5157 6964 0.957395 AGGAAGGTGCTGTGCGAATG 60.957 55.000 0.00 0.00 0.00 2.67
5280 7088 8.929827 TTATGATTTGCATTCCACAACTTATG 57.070 30.769 0.00 0.00 38.44 1.90
5398 7206 6.817641 GGATTGATTGCACCAATGAACAATAA 59.182 34.615 15.77 0.00 33.90 1.40
5444 7252 3.996150 ACCTTCACATTGACTGCTTTG 57.004 42.857 0.00 0.00 0.00 2.77
5546 7354 7.062749 ACAACAGAAGTTAGTGGAAGTATCA 57.937 36.000 0.00 0.00 35.85 2.15
5557 7365 3.081061 TGGAAGTATCATGTGGCACAAC 58.919 45.455 25.95 17.78 44.16 3.32
6351 8160 9.294030 GCCATCAAACTTCTTATTTTATGTCAG 57.706 33.333 0.00 0.00 0.00 3.51
6448 8287 8.677300 TGCTGACAGGAAATTAATATCAAAGAC 58.323 33.333 4.26 0.00 0.00 3.01
6449 8288 8.677300 GCTGACAGGAAATTAATATCAAAGACA 58.323 33.333 4.26 0.00 0.00 3.41
6468 8307 8.298854 CAAAGACATACATTTGTTTCCAGATGA 58.701 33.333 0.84 0.00 36.82 2.92
6732 8731 7.417612 CGTGGAAATACAATATTTGCTTAGCT 58.582 34.615 5.60 0.00 31.81 3.32
6841 8840 9.140286 GAAGTAAAGTTATCTTTGCAAATTCCC 57.860 33.333 13.23 0.38 44.63 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.515854 ACAACTCCAGCTACGAGAAGA 58.484 47.619 15.14 0.00 0.00 2.87
54 55 0.179248 GCAGTCGAGCGCAGTTTAAC 60.179 55.000 11.47 0.00 0.00 2.01
174 175 4.031765 CGGAGAATGATGAATATTACGCGG 59.968 45.833 12.47 0.00 0.00 6.46
188 189 1.153765 CAGTGCGCTCGGAGAATGA 60.154 57.895 9.73 0.00 34.09 2.57
196 197 1.577328 AAATCAACCCAGTGCGCTCG 61.577 55.000 9.73 1.44 0.00 5.03
199 200 1.154225 CGAAATCAACCCAGTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
212 213 9.167239 CGAAAATAGAACGATCTAGTACGAAAT 57.833 33.333 17.43 0.00 41.36 2.17
213 214 8.390354 TCGAAAATAGAACGATCTAGTACGAAA 58.610 33.333 20.29 7.74 41.36 3.46
214 215 7.909267 TCGAAAATAGAACGATCTAGTACGAA 58.091 34.615 20.29 10.72 41.36 3.85
215 216 7.436376 TCTCGAAAATAGAACGATCTAGTACGA 59.564 37.037 20.79 20.79 41.36 3.43
216 217 7.562412 TCTCGAAAATAGAACGATCTAGTACG 58.438 38.462 16.74 16.74 41.36 3.67
217 218 9.881529 ATTCTCGAAAATAGAACGATCTAGTAC 57.118 33.333 8.47 3.60 41.36 2.73
219 220 9.453325 GAATTCTCGAAAATAGAACGATCTAGT 57.547 33.333 8.47 2.65 41.36 2.57
220 221 9.672086 AGAATTCTCGAAAATAGAACGATCTAG 57.328 33.333 0.88 0.00 41.36 2.43
221 222 9.666626 GAGAATTCTCGAAAATAGAACGATCTA 57.333 33.333 19.31 4.76 35.87 1.98
222 223 8.568732 GAGAATTCTCGAAAATAGAACGATCT 57.431 34.615 19.31 0.00 35.87 2.75
238 239 5.869888 ACCACAACATACGAAGAGAATTCTC 59.130 40.000 25.20 25.20 43.17 2.87
239 240 5.794894 ACCACAACATACGAAGAGAATTCT 58.205 37.500 7.95 7.95 34.29 2.40
240 241 7.033791 TCTACCACAACATACGAAGAGAATTC 58.966 38.462 0.00 0.00 0.00 2.17
241 242 6.931838 TCTACCACAACATACGAAGAGAATT 58.068 36.000 0.00 0.00 0.00 2.17
242 243 6.525578 TCTACCACAACATACGAAGAGAAT 57.474 37.500 0.00 0.00 0.00 2.40
243 244 5.970317 TCTACCACAACATACGAAGAGAA 57.030 39.130 0.00 0.00 0.00 2.87
244 245 5.618418 CGTTCTACCACAACATACGAAGAGA 60.618 44.000 0.00 0.00 0.00 3.10
245 246 4.557690 CGTTCTACCACAACATACGAAGAG 59.442 45.833 0.00 0.00 0.00 2.85
246 247 4.478699 CGTTCTACCACAACATACGAAGA 58.521 43.478 0.00 0.00 0.00 2.87
247 248 3.611113 CCGTTCTACCACAACATACGAAG 59.389 47.826 0.00 0.00 0.00 3.79
248 249 3.005684 ACCGTTCTACCACAACATACGAA 59.994 43.478 0.00 0.00 0.00 3.85
249 250 2.557924 ACCGTTCTACCACAACATACGA 59.442 45.455 0.00 0.00 0.00 3.43
250 251 2.950433 ACCGTTCTACCACAACATACG 58.050 47.619 0.00 0.00 0.00 3.06
251 252 5.314923 TCTACCGTTCTACCACAACATAC 57.685 43.478 0.00 0.00 0.00 2.39
357 408 4.832823 GGTCAAATATATTTCCCACCCAGG 59.167 45.833 7.76 0.00 37.03 4.45
410 461 2.682856 GTGGAGCAGAAACTCACAACAA 59.317 45.455 0.00 0.00 38.50 2.83
435 486 2.073816 GTCATTAGTTCCCACCACGTG 58.926 52.381 9.08 9.08 0.00 4.49
499 550 6.866480 TGAATCTGTTCATTTAAAGATGCCC 58.134 36.000 0.00 0.00 39.36 5.36
578 629 3.005684 GCCATCTCAATCACAAAACACCA 59.994 43.478 0.00 0.00 0.00 4.17
580 631 3.983344 GTGCCATCTCAATCACAAAACAC 59.017 43.478 0.00 0.00 0.00 3.32
587 638 4.697352 ACAGTTAAGTGCCATCTCAATCAC 59.303 41.667 10.30 0.00 0.00 3.06
655 708 1.930503 TGTTCACACACACGACATGTC 59.069 47.619 16.21 16.21 40.64 3.06
662 715 1.939934 ACTGGATTGTTCACACACACG 59.060 47.619 0.00 0.00 30.32 4.49
677 730 4.383118 GCTTTAAGGCACTATCTCACTGGA 60.383 45.833 4.44 0.00 38.49 3.86
688 741 8.381636 AGATCATTCTATATGCTTTAAGGCACT 58.618 33.333 15.14 7.96 45.36 4.40
698 751 9.941325 CTACTTTTCCAGATCATTCTATATGCT 57.059 33.333 0.00 0.00 0.00 3.79
734 787 1.054574 CATGTGCGTGTCAATTGTGC 58.945 50.000 5.13 6.56 0.00 4.57
784 837 7.112122 ACTCATGCAAAAGGACTATTACATCA 58.888 34.615 0.00 0.00 0.00 3.07
794 847 1.537202 AGCGAACTCATGCAAAAGGAC 59.463 47.619 0.00 0.00 0.00 3.85
887 940 8.874744 ACTACTTATCCAACTAGAACACTGTA 57.125 34.615 0.00 0.00 0.00 2.74
919 972 6.395629 TCCTCTCGACCTGTATAAACAAAAG 58.604 40.000 0.00 0.00 34.49 2.27
926 979 2.092049 TGCCTCCTCTCGACCTGTATAA 60.092 50.000 0.00 0.00 0.00 0.98
940 993 2.240667 AGCTCAATAACATGTGCCTCCT 59.759 45.455 0.00 0.00 39.89 3.69
947 1000 3.959495 ATCCCCAGCTCAATAACATGT 57.041 42.857 0.00 0.00 0.00 3.21
951 1004 6.003950 TGCTTTATATCCCCAGCTCAATAAC 58.996 40.000 0.00 0.00 33.15 1.89
984 1037 5.104193 ACAAATCCTGAGATTACTGGCTGAT 60.104 40.000 0.00 0.00 42.03 2.90
1101 1154 5.366186 ACTTCCTCTCTTAGTGATGCATCAT 59.634 40.000 30.89 21.00 39.30 2.45
1282 1335 9.343539 AGAGAAGAACTTATACCATATTTTGCC 57.656 33.333 0.00 0.00 0.00 4.52
1426 1479 1.848895 GGGACTGTTACCACCCCCA 60.849 63.158 0.00 0.00 36.65 4.96
1482 1535 4.469469 CCATATTGGTGGGTCCCTAAAT 57.531 45.455 10.00 8.74 35.55 1.40
1531 1584 3.475566 AGCTCTGAAACTTGTGCAGTA 57.524 42.857 0.00 0.00 32.94 2.74
1634 1687 0.178903 AGGGGAGTGTACCAGAGCAA 60.179 55.000 0.00 0.00 0.00 3.91
1639 1692 3.838903 ACTTTTCTAGGGGAGTGTACCAG 59.161 47.826 0.00 0.00 0.00 4.00
1646 1699 5.845065 AGTCTGTAAACTTTTCTAGGGGAGT 59.155 40.000 0.00 0.00 0.00 3.85
1647 1700 6.361768 AGTCTGTAAACTTTTCTAGGGGAG 57.638 41.667 0.00 0.00 0.00 4.30
1648 1701 6.517864 CGAAGTCTGTAAACTTTTCTAGGGGA 60.518 42.308 0.00 0.00 39.55 4.81
1649 1702 5.638234 CGAAGTCTGTAAACTTTTCTAGGGG 59.362 44.000 0.00 0.00 39.55 4.79
1650 1703 6.453092 TCGAAGTCTGTAAACTTTTCTAGGG 58.547 40.000 0.00 0.00 39.55 3.53
1651 1704 7.412020 GCATCGAAGTCTGTAAACTTTTCTAGG 60.412 40.741 0.00 0.00 39.55 3.02
1652 1705 7.116376 TGCATCGAAGTCTGTAAACTTTTCTAG 59.884 37.037 0.00 0.00 39.55 2.43
1653 1706 6.926826 TGCATCGAAGTCTGTAAACTTTTCTA 59.073 34.615 0.00 0.00 39.55 2.10
1654 1707 5.758296 TGCATCGAAGTCTGTAAACTTTTCT 59.242 36.000 0.00 0.00 39.55 2.52
1655 1708 5.985781 TGCATCGAAGTCTGTAAACTTTTC 58.014 37.500 0.00 0.00 39.55 2.29
1656 1709 5.758296 TCTGCATCGAAGTCTGTAAACTTTT 59.242 36.000 0.00 0.00 39.55 2.27
1657 1710 5.297547 TCTGCATCGAAGTCTGTAAACTTT 58.702 37.500 0.00 0.00 39.55 2.66
1658 1711 4.883083 TCTGCATCGAAGTCTGTAAACTT 58.117 39.130 0.00 0.00 42.10 2.66
1659 1712 4.521130 TCTGCATCGAAGTCTGTAAACT 57.479 40.909 0.00 0.00 0.00 2.66
1660 1713 5.786401 AATCTGCATCGAAGTCTGTAAAC 57.214 39.130 0.00 0.00 0.00 2.01
1661 1714 7.064609 CCTTTAATCTGCATCGAAGTCTGTAAA 59.935 37.037 0.00 0.00 0.00 2.01
1662 1715 6.535150 CCTTTAATCTGCATCGAAGTCTGTAA 59.465 38.462 0.00 0.00 0.00 2.41
1663 1716 6.042777 CCTTTAATCTGCATCGAAGTCTGTA 58.957 40.000 0.00 0.00 0.00 2.74
1664 1717 4.872691 CCTTTAATCTGCATCGAAGTCTGT 59.127 41.667 0.00 0.00 0.00 3.41
1665 1718 4.872691 ACCTTTAATCTGCATCGAAGTCTG 59.127 41.667 0.00 0.00 0.00 3.51
1666 1719 4.872691 CACCTTTAATCTGCATCGAAGTCT 59.127 41.667 0.00 0.00 0.00 3.24
1667 1720 4.034510 CCACCTTTAATCTGCATCGAAGTC 59.965 45.833 0.00 0.00 0.00 3.01
1668 1721 3.941483 CCACCTTTAATCTGCATCGAAGT 59.059 43.478 0.00 0.00 0.00 3.01
1669 1722 4.191544 TCCACCTTTAATCTGCATCGAAG 58.808 43.478 0.00 0.00 0.00 3.79
1670 1723 4.081142 TCTCCACCTTTAATCTGCATCGAA 60.081 41.667 0.00 0.00 0.00 3.71
1671 1724 3.450817 TCTCCACCTTTAATCTGCATCGA 59.549 43.478 0.00 0.00 0.00 3.59
1672 1725 3.797039 TCTCCACCTTTAATCTGCATCG 58.203 45.455 0.00 0.00 0.00 3.84
1673 1726 7.220030 TCTAATCTCCACCTTTAATCTGCATC 58.780 38.462 0.00 0.00 0.00 3.91
1674 1727 7.141758 TCTAATCTCCACCTTTAATCTGCAT 57.858 36.000 0.00 0.00 0.00 3.96
1675 1728 6.560003 TCTAATCTCCACCTTTAATCTGCA 57.440 37.500 0.00 0.00 0.00 4.41
1676 1729 7.275920 TCTTCTAATCTCCACCTTTAATCTGC 58.724 38.462 0.00 0.00 0.00 4.26
1679 1732 9.713713 GGTATCTTCTAATCTCCACCTTTAATC 57.286 37.037 0.00 0.00 0.00 1.75
1680 1733 9.453830 AGGTATCTTCTAATCTCCACCTTTAAT 57.546 33.333 0.00 0.00 31.10 1.40
1681 1734 8.855804 AGGTATCTTCTAATCTCCACCTTTAA 57.144 34.615 0.00 0.00 31.10 1.52
1682 1735 8.855804 AAGGTATCTTCTAATCTCCACCTTTA 57.144 34.615 0.00 0.00 41.22 1.85
1757 2158 8.768501 ATTAAAATCCCTATTCTCCCAAAGTC 57.231 34.615 0.00 0.00 0.00 3.01
1805 2206 5.375417 TGGTCAACTATTTCATGCAAGTG 57.625 39.130 0.00 0.00 0.00 3.16
1806 2207 6.658816 TGTATGGTCAACTATTTCATGCAAGT 59.341 34.615 0.00 0.00 30.04 3.16
1904 2310 6.432472 GGGCCATTTCATTGGATTTGTTTTTA 59.568 34.615 4.39 0.00 39.25 1.52
1928 2334 4.952335 AGGTGAAGAGAATATGCCAAAAGG 59.048 41.667 0.00 0.00 0.00 3.11
1965 2371 4.516698 AGCGTGATTTGGATGTGATATTCC 59.483 41.667 0.00 0.00 0.00 3.01
1966 2372 5.446709 CAGCGTGATTTGGATGTGATATTC 58.553 41.667 0.00 0.00 0.00 1.75
1972 2378 0.522626 TGCAGCGTGATTTGGATGTG 59.477 50.000 0.00 0.00 0.00 3.21
2108 2514 3.284617 ACTTCCAAAAGGTTTGCTACGT 58.715 40.909 0.00 0.00 36.78 3.57
2110 2516 5.529800 TCACTACTTCCAAAAGGTTTGCTAC 59.470 40.000 0.00 0.00 36.78 3.58
2128 2534 6.073222 ACGATTTGGTTCAAGACATTCACTAC 60.073 38.462 0.00 0.00 0.00 2.73
2189 2595 2.969821 TACCTGGGAAAGCACACATT 57.030 45.000 0.00 0.00 0.00 2.71
2201 2607 5.593909 TGAAACAATCTTGCATATACCTGGG 59.406 40.000 0.00 0.00 0.00 4.45
2329 2735 4.644234 TGAAGAAAGCAAACTTGTCATCCA 59.356 37.500 0.00 0.00 35.85 3.41
2410 2816 7.920160 TGACACAGACTCATAAATTATGCAA 57.080 32.000 8.06 0.00 36.14 4.08
2532 2938 6.938507 TGCTATTTCATGCCAAAATTCTTCT 58.061 32.000 0.00 0.00 0.00 2.85
2686 3092 5.050091 CGAGTGAGGTTGGCACATAAATATC 60.050 44.000 0.00 0.00 39.30 1.63
2776 3182 3.374988 TCATACAGCGAAAGGAAATGCAG 59.625 43.478 0.00 0.00 0.00 4.41
2789 3195 2.854777 GCTACACTCAACTCATACAGCG 59.145 50.000 0.00 0.00 0.00 5.18
2932 3340 8.801299 TGGATCAAAGCACAAGATATTTTAACA 58.199 29.630 0.00 0.00 0.00 2.41
2933 3341 9.294030 CTGGATCAAAGCACAAGATATTTTAAC 57.706 33.333 0.00 0.00 0.00 2.01
3077 3485 4.412528 GGGTCAGTTACTCCCTGGAAATAT 59.587 45.833 2.21 0.00 38.29 1.28
3078 3486 3.778629 GGGTCAGTTACTCCCTGGAAATA 59.221 47.826 2.21 0.00 38.29 1.40
3101 3509 5.921962 AGAGCATTCCGATATACAGCATA 57.078 39.130 0.00 0.00 0.00 3.14
3181 3589 6.549364 TGTAGGAAGTGGAAACATGACAAAAT 59.451 34.615 0.00 0.00 46.14 1.82
3352 3760 9.836076 AAAATTTCATGATCATATACATGCTCG 57.164 29.630 8.15 0.00 42.17 5.03
3945 4353 6.149973 GGCATCAATATCTGCTTTATAGTGCA 59.850 38.462 0.00 0.00 38.45 4.57
4006 4414 5.276395 GCAGTTACACATAACATGAGCTACG 60.276 44.000 0.00 0.00 42.83 3.51
4082 4490 4.583871 CCTCAAGAAAGGTTGCTATCTGT 58.416 43.478 0.00 0.00 0.00 3.41
4089 4497 3.391506 AAATGCCTCAAGAAAGGTTGC 57.608 42.857 0.00 0.00 38.79 4.17
4260 4669 3.385755 AGAGCCACAAGACATTTGCTTTT 59.614 39.130 0.00 0.00 0.00 2.27
4355 4764 2.371841 TGCTATGAACTTCAGGTGGTGT 59.628 45.455 0.00 0.00 0.00 4.16
4596 5005 2.235650 TCCATTCTCAGGACAAGAGCTG 59.764 50.000 0.00 0.00 33.15 4.24
4647 5056 1.080705 AGGTGCAGACGAAGCGTAC 60.081 57.895 0.00 0.00 41.37 3.67
4651 5060 0.390340 TGATCAGGTGCAGACGAAGC 60.390 55.000 0.00 0.00 0.00 3.86
5140 6947 1.503542 CCATTCGCACAGCACCTTC 59.496 57.895 0.00 0.00 0.00 3.46
5157 6964 3.365472 AGGTCATAGTTTTGATTGCCCC 58.635 45.455 0.00 0.00 0.00 5.80
5280 7088 6.263842 TGTCCCTTCAGATTTATGCAATGATC 59.736 38.462 0.00 0.00 0.00 2.92
5472 7280 5.470777 TCAACCGTTTTAATACCTGGAGTTG 59.529 40.000 0.00 0.00 33.83 3.16
5546 7354 1.074405 ACAGGATCAGTTGTGCCACAT 59.926 47.619 0.00 0.00 0.00 3.21
5557 7365 2.974794 TGATGGGTATGGACAGGATCAG 59.025 50.000 0.00 0.00 0.00 2.90
6391 8230 8.892723 TCGATTCATTGCTGTTCAAGTTATAAT 58.107 29.630 0.00 0.00 38.22 1.28
6392 8231 8.262715 TCGATTCATTGCTGTTCAAGTTATAA 57.737 30.769 0.00 0.00 38.22 0.98
6393 8232 7.841915 TCGATTCATTGCTGTTCAAGTTATA 57.158 32.000 0.00 0.00 38.22 0.98
6394 8233 6.741992 TCGATTCATTGCTGTTCAAGTTAT 57.258 33.333 0.00 0.00 38.22 1.89
6395 8234 6.741992 ATCGATTCATTGCTGTTCAAGTTA 57.258 33.333 0.00 0.00 38.22 2.24
6396 8235 5.633830 ATCGATTCATTGCTGTTCAAGTT 57.366 34.783 0.00 0.00 38.22 2.66
6397 8236 5.181811 TCAATCGATTCATTGCTGTTCAAGT 59.818 36.000 7.92 0.00 38.22 3.16
6404 8243 3.975035 CAGCATCAATCGATTCATTGCTG 59.025 43.478 31.29 31.29 37.34 4.41
6415 8254 4.627611 AATTTCCTGTCAGCATCAATCG 57.372 40.909 0.00 0.00 0.00 3.34
6468 8307 9.944376 TTTCTAGTCAGCATCAAGTTATTAACT 57.056 29.630 3.16 3.16 45.46 2.24
6560 8399 0.734889 ATTCGAGCATTTGGGCTTCG 59.265 50.000 0.00 0.00 45.99 3.79
6587 8426 5.562635 TGTTACACCCACTTCCGATAAAAT 58.437 37.500 0.00 0.00 0.00 1.82
6594 8433 2.413837 CTTCTGTTACACCCACTTCCG 58.586 52.381 0.00 0.00 0.00 4.30
6596 8435 3.764237 TCCTTCTGTTACACCCACTTC 57.236 47.619 0.00 0.00 0.00 3.01
6732 8731 9.226606 CCACTACTTCAAAACCAACTATCATTA 57.773 33.333 0.00 0.00 0.00 1.90
6841 8840 1.205893 GGACTACCTGGAGTCTTGCTG 59.794 57.143 19.01 0.00 44.50 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.