Multiple sequence alignment - TraesCS6D01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G247900 chr6D 100.000 3833 0 0 1 3833 351124862 351128694 0.000000e+00 7079.0
1 TraesCS6D01G247900 chr6D 85.748 428 37 13 2 424 421771946 421771538 7.610000e-117 431.0
2 TraesCS6D01G247900 chr6D 78.445 283 39 7 3552 3818 76055411 76055135 8.520000e-37 165.0
3 TraesCS6D01G247900 chr6B 95.251 2569 100 6 489 3039 528332051 528329487 0.000000e+00 4048.0
4 TraesCS6D01G247900 chr6B 87.805 410 27 12 3352 3745 528320114 528319712 3.490000e-125 459.0
5 TraesCS6D01G247900 chr6B 84.568 324 31 11 3030 3341 528320477 528320161 1.730000e-78 303.0
6 TraesCS6D01G247900 chr6A 97.024 2386 51 11 584 2951 492333299 492330916 0.000000e+00 3995.0
7 TraesCS6D01G247900 chr6A 86.445 391 38 9 26 415 528926713 528926337 7.660000e-112 414.0
8 TraesCS6D01G247900 chrUn 93.563 668 37 4 1356 2017 105322460 105323127 0.000000e+00 990.0
9 TraesCS6D01G247900 chr1B 87.838 592 49 9 1345 1935 193277168 193276599 0.000000e+00 673.0
10 TraesCS6D01G247900 chr1B 95.402 87 4 0 1931 2017 193246571 193246485 5.160000e-29 139.0
11 TraesCS6D01G247900 chr1B 100.000 52 0 0 1266 1317 193277223 193277172 3.150000e-16 97.1
12 TraesCS6D01G247900 chr1D 87.532 393 36 7 25 417 466134133 466134512 3.510000e-120 442.0
13 TraesCS6D01G247900 chr1D 85.938 128 15 3 285 409 319628483 319628610 2.400000e-27 134.0
14 TraesCS6D01G247900 chr2A 85.161 310 31 8 25 333 759296414 759296119 1.730000e-78 303.0
15 TraesCS6D01G247900 chr2A 83.810 105 7 2 326 421 759295836 759295733 1.470000e-14 91.6
16 TraesCS6D01G247900 chr2A 87.719 57 7 0 1829 1885 3796030 3796086 2.470000e-07 67.6
17 TraesCS6D01G247900 chr3D 79.419 413 58 15 8 409 31752417 31752813 2.270000e-67 267.0
18 TraesCS6D01G247900 chr3B 96.154 130 4 1 1819 1948 508757699 508757571 1.080000e-50 211.0
19 TraesCS6D01G247900 chr3B 93.878 98 6 0 1704 1801 508757946 508757849 8.580000e-32 148.0
20 TraesCS6D01G247900 chr3B 90.541 74 7 0 345 418 178385649 178385722 8.760000e-17 99.0
21 TraesCS6D01G247900 chr7A 91.667 84 7 0 78 161 7433294 7433211 2.420000e-22 117.0
22 TraesCS6D01G247900 chr7D 96.078 51 1 1 365 415 488056485 488056436 8.830000e-12 82.4
23 TraesCS6D01G247900 chr4A 89.706 68 2 5 350 415 581475085 581475149 8.830000e-12 82.4
24 TraesCS6D01G247900 chr2D 87.719 57 7 0 1829 1885 5231840 5231896 2.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G247900 chr6D 351124862 351128694 3832 False 7079.00 7079 100.0000 1 3833 1 chr6D.!!$F1 3832
1 TraesCS6D01G247900 chr6B 528329487 528332051 2564 True 4048.00 4048 95.2510 489 3039 1 chr6B.!!$R1 2550
2 TraesCS6D01G247900 chr6B 528319712 528320477 765 True 381.00 459 86.1865 3030 3745 2 chr6B.!!$R2 715
3 TraesCS6D01G247900 chr6A 492330916 492333299 2383 True 3995.00 3995 97.0240 584 2951 1 chr6A.!!$R1 2367
4 TraesCS6D01G247900 chrUn 105322460 105323127 667 False 990.00 990 93.5630 1356 2017 1 chrUn.!!$F1 661
5 TraesCS6D01G247900 chr1B 193276599 193277223 624 True 385.05 673 93.9190 1266 1935 2 chr1B.!!$R2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.099436 GCAAATGAACGGCTAGCCAG 59.901 55.0 32.47 25.43 35.37 4.85 F
402 403 0.249322 TAAGATCAGCCGGCTTACGC 60.249 55.0 30.60 16.67 42.52 4.42 F
473 474 0.320374 TGGTACTGAAGACCAAGCGG 59.680 55.0 0.00 0.00 44.08 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1822 3.282557 TGAACGTGTTCAGCGTCAT 57.717 47.368 11.21 0.0 43.90 3.06 R
2766 2790 4.430765 CGGTTCCGGTCCCTGACG 62.431 72.222 0.00 0.0 32.65 4.35 R
2871 2895 4.644234 CAGTTGCCCATATTTACACCATCA 59.356 41.667 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.165498 GCCGGTGCTGTTACGAAG 58.835 61.111 1.90 0.00 33.53 3.79
21 22 3.023591 GCCGGTGCTGTTACGAAGC 62.024 63.158 1.90 0.00 41.22 3.86
47 48 4.266070 GTCGCCGGAGCATCGCTA 62.266 66.667 5.05 0.00 39.88 4.26
48 49 3.523668 TCGCCGGAGCATCGCTAA 61.524 61.111 5.05 0.00 39.88 3.09
49 50 2.356313 CGCCGGAGCATCGCTAAT 60.356 61.111 5.05 0.00 39.88 1.73
50 51 2.661566 CGCCGGAGCATCGCTAATG 61.662 63.158 5.05 0.00 39.88 1.90
60 61 3.103447 CATCGCTAATGCTTCAGGAGA 57.897 47.619 0.00 0.00 36.97 3.71
61 62 3.661944 CATCGCTAATGCTTCAGGAGAT 58.338 45.455 0.00 0.00 36.97 2.75
62 63 3.103447 TCGCTAATGCTTCAGGAGATG 57.897 47.619 0.00 0.00 36.97 2.90
63 64 2.141517 CGCTAATGCTTCAGGAGATGG 58.858 52.381 0.00 0.00 36.97 3.51
64 65 2.484417 CGCTAATGCTTCAGGAGATGGT 60.484 50.000 0.00 0.00 36.97 3.55
65 66 3.137533 GCTAATGCTTCAGGAGATGGTC 58.862 50.000 0.00 0.00 36.03 4.02
66 67 2.322355 AATGCTTCAGGAGATGGTCG 57.678 50.000 0.00 0.00 0.00 4.79
67 68 0.179062 ATGCTTCAGGAGATGGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
68 69 1.219124 GCTTCAGGAGATGGTCGCA 59.781 57.895 0.00 0.00 0.00 5.10
69 70 0.391661 GCTTCAGGAGATGGTCGCAA 60.392 55.000 0.00 0.00 0.00 4.85
70 71 1.745141 GCTTCAGGAGATGGTCGCAAT 60.745 52.381 0.00 0.00 0.00 3.56
71 72 2.636830 CTTCAGGAGATGGTCGCAATT 58.363 47.619 0.00 0.00 0.00 2.32
72 73 2.028420 TCAGGAGATGGTCGCAATTG 57.972 50.000 0.00 0.00 0.00 2.32
73 74 0.379669 CAGGAGATGGTCGCAATTGC 59.620 55.000 20.76 20.76 37.78 3.56
83 84 2.502510 GCAATTGCGTCGGTGCTG 60.503 61.111 15.87 0.00 34.13 4.41
84 85 2.502510 CAATTGCGTCGGTGCTGC 60.503 61.111 0.00 0.00 35.36 5.25
85 86 2.977456 AATTGCGTCGGTGCTGCA 60.977 55.556 0.00 0.00 36.72 4.41
86 87 2.969806 AATTGCGTCGGTGCTGCAG 61.970 57.895 10.11 10.11 40.15 4.41
105 106 4.662961 CGTGGCCAGTGCTGACGA 62.663 66.667 5.11 0.00 42.27 4.20
106 107 2.740055 GTGGCCAGTGCTGACGAG 60.740 66.667 5.11 0.00 37.74 4.18
107 108 4.687215 TGGCCAGTGCTGACGAGC 62.687 66.667 0.00 0.00 46.44 5.03
108 109 4.385405 GGCCAGTGCTGACGAGCT 62.385 66.667 0.00 0.00 46.39 4.09
109 110 2.813042 GCCAGTGCTGACGAGCTC 60.813 66.667 2.73 2.73 46.39 4.09
110 111 2.505777 CCAGTGCTGACGAGCTCG 60.506 66.667 33.45 33.45 46.39 5.03
111 112 3.177920 CAGTGCTGACGAGCTCGC 61.178 66.667 34.83 26.13 46.39 5.03
112 113 4.427661 AGTGCTGACGAGCTCGCC 62.428 66.667 34.83 26.01 46.39 5.54
121 122 4.445545 GAGCTCGCCGGCGTTTTG 62.446 66.667 44.16 31.43 40.74 2.44
124 125 4.025401 CTCGCCGGCGTTTTGCTT 62.025 61.111 44.16 0.00 45.43 3.91
125 126 3.536498 CTCGCCGGCGTTTTGCTTT 62.536 57.895 44.16 0.00 45.43 3.51
126 127 3.097114 CGCCGGCGTTTTGCTTTC 61.097 61.111 39.71 0.00 45.43 2.62
127 128 2.026879 GCCGGCGTTTTGCTTTCA 59.973 55.556 12.58 0.00 45.43 2.69
128 129 2.016165 GCCGGCGTTTTGCTTTCAG 61.016 57.895 12.58 0.00 45.43 3.02
129 130 1.652012 CCGGCGTTTTGCTTTCAGA 59.348 52.632 6.01 0.00 45.43 3.27
130 131 0.240945 CCGGCGTTTTGCTTTCAGAT 59.759 50.000 6.01 0.00 45.43 2.90
131 132 1.330306 CGGCGTTTTGCTTTCAGATG 58.670 50.000 0.00 0.00 45.43 2.90
132 133 1.069296 CGGCGTTTTGCTTTCAGATGA 60.069 47.619 0.00 0.00 45.43 2.92
133 134 2.319472 GGCGTTTTGCTTTCAGATGAC 58.681 47.619 0.00 0.00 45.43 3.06
134 135 2.319472 GCGTTTTGCTTTCAGATGACC 58.681 47.619 0.00 0.00 41.73 4.02
135 136 2.574322 CGTTTTGCTTTCAGATGACCG 58.426 47.619 0.00 0.00 0.00 4.79
136 137 2.665519 CGTTTTGCTTTCAGATGACCGG 60.666 50.000 0.00 0.00 0.00 5.28
137 138 2.270352 TTTGCTTTCAGATGACCGGT 57.730 45.000 6.92 6.92 0.00 5.28
138 139 1.522668 TTGCTTTCAGATGACCGGTG 58.477 50.000 14.63 0.00 0.00 4.94
139 140 0.684535 TGCTTTCAGATGACCGGTGA 59.315 50.000 14.63 2.52 0.00 4.02
140 141 1.079503 GCTTTCAGATGACCGGTGAC 58.920 55.000 14.63 0.00 0.00 3.67
141 142 1.608025 GCTTTCAGATGACCGGTGACA 60.608 52.381 14.63 4.70 0.00 3.58
142 143 2.069273 CTTTCAGATGACCGGTGACAC 58.931 52.381 14.63 0.96 0.00 3.67
143 144 1.044611 TTCAGATGACCGGTGACACA 58.955 50.000 14.63 3.25 0.00 3.72
144 145 0.603065 TCAGATGACCGGTGACACAG 59.397 55.000 14.63 2.95 0.00 3.66
145 146 1.016130 CAGATGACCGGTGACACAGC 61.016 60.000 14.63 6.47 0.00 4.40
146 147 1.188219 AGATGACCGGTGACACAGCT 61.188 55.000 14.63 9.28 0.00 4.24
147 148 1.004560 ATGACCGGTGACACAGCTG 60.005 57.895 14.63 13.48 0.00 4.24
148 149 1.471829 ATGACCGGTGACACAGCTGA 61.472 55.000 23.35 0.00 0.00 4.26
149 150 1.293498 GACCGGTGACACAGCTGAT 59.707 57.895 23.35 7.98 0.00 2.90
150 151 1.004560 ACCGGTGACACAGCTGATG 60.005 57.895 23.35 16.93 0.00 3.07
151 152 2.393768 CCGGTGACACAGCTGATGC 61.394 63.158 23.35 9.07 40.05 3.91
152 153 1.668793 CGGTGACACAGCTGATGCA 60.669 57.895 23.35 11.74 42.74 3.96
153 154 1.229975 CGGTGACACAGCTGATGCAA 61.230 55.000 23.35 4.26 42.74 4.08
154 155 0.239347 GGTGACACAGCTGATGCAAC 59.761 55.000 23.35 13.35 42.74 4.17
155 156 0.110509 GTGACACAGCTGATGCAACG 60.111 55.000 23.35 1.88 42.74 4.10
156 157 0.532640 TGACACAGCTGATGCAACGT 60.533 50.000 23.35 5.20 42.74 3.99
157 158 0.110509 GACACAGCTGATGCAACGTG 60.111 55.000 23.35 8.00 42.74 4.49
158 159 1.208358 CACAGCTGATGCAACGTGG 59.792 57.895 23.35 0.00 42.74 4.94
159 160 1.071299 ACAGCTGATGCAACGTGGA 59.929 52.632 23.35 0.00 42.74 4.02
160 161 1.230635 ACAGCTGATGCAACGTGGAC 61.231 55.000 23.35 0.00 42.74 4.02
161 162 2.029288 AGCTGATGCAACGTGGACG 61.029 57.895 0.00 0.00 43.08 4.79
162 163 2.715532 AGCTGATGCAACGTGGACGT 62.716 55.000 0.00 0.00 45.68 4.34
163 164 3.356983 AGCTGATGCAACGTGGACGTA 62.357 52.381 5.06 0.00 46.24 3.57
171 172 3.850923 CGTGGACGTACGTTGCAT 58.149 55.556 23.70 0.00 39.13 3.96
172 173 1.700029 CGTGGACGTACGTTGCATC 59.300 57.895 23.70 8.99 39.13 3.91
173 174 0.731514 CGTGGACGTACGTTGCATCT 60.732 55.000 23.70 0.00 39.13 2.90
174 175 0.989890 GTGGACGTACGTTGCATCTC 59.010 55.000 23.70 7.43 0.00 2.75
175 176 0.455464 TGGACGTACGTTGCATCTCG 60.455 55.000 23.70 0.00 0.00 4.04
176 177 0.455633 GGACGTACGTTGCATCTCGT 60.456 55.000 23.70 14.39 42.82 4.18
177 178 0.633733 GACGTACGTTGCATCTCGTG 59.366 55.000 23.70 8.20 40.50 4.35
190 191 4.831741 CATCTCGTGCAAGTAGAAGTTC 57.168 45.455 0.00 0.00 0.00 3.01
191 192 2.929960 TCTCGTGCAAGTAGAAGTTCG 58.070 47.619 0.00 0.00 0.00 3.95
192 193 2.292569 TCTCGTGCAAGTAGAAGTTCGT 59.707 45.455 0.00 0.00 0.00 3.85
193 194 2.390938 TCGTGCAAGTAGAAGTTCGTG 58.609 47.619 0.00 0.00 0.00 4.35
194 195 1.455786 CGTGCAAGTAGAAGTTCGTGG 59.544 52.381 0.00 0.00 0.00 4.94
195 196 2.480845 GTGCAAGTAGAAGTTCGTGGT 58.519 47.619 0.00 0.00 0.00 4.16
196 197 2.221055 GTGCAAGTAGAAGTTCGTGGTG 59.779 50.000 0.00 0.00 0.00 4.17
197 198 1.194772 GCAAGTAGAAGTTCGTGGTGC 59.805 52.381 8.28 8.28 0.00 5.01
198 199 2.479837 CAAGTAGAAGTTCGTGGTGCA 58.520 47.619 0.00 0.00 0.00 4.57
199 200 2.869801 CAAGTAGAAGTTCGTGGTGCAA 59.130 45.455 0.00 0.00 0.00 4.08
200 201 2.755650 AGTAGAAGTTCGTGGTGCAAG 58.244 47.619 0.00 0.00 0.00 4.01
201 202 2.102588 AGTAGAAGTTCGTGGTGCAAGT 59.897 45.455 0.00 0.00 0.00 3.16
202 203 2.902705 AGAAGTTCGTGGTGCAAGTA 57.097 45.000 0.00 0.00 0.00 2.24
203 204 2.755650 AGAAGTTCGTGGTGCAAGTAG 58.244 47.619 0.00 0.00 0.00 2.57
204 205 2.364324 AGAAGTTCGTGGTGCAAGTAGA 59.636 45.455 0.00 0.00 0.00 2.59
205 206 2.902705 AGTTCGTGGTGCAAGTAGAA 57.097 45.000 0.00 0.00 0.00 2.10
206 207 2.755650 AGTTCGTGGTGCAAGTAGAAG 58.244 47.619 0.00 0.00 0.00 2.85
207 208 2.102588 AGTTCGTGGTGCAAGTAGAAGT 59.897 45.455 0.00 0.00 0.00 3.01
208 209 2.870411 GTTCGTGGTGCAAGTAGAAGTT 59.130 45.455 0.00 0.00 0.00 2.66
209 210 2.750948 TCGTGGTGCAAGTAGAAGTTC 58.249 47.619 0.00 0.00 0.00 3.01
210 211 1.455786 CGTGGTGCAAGTAGAAGTTCG 59.544 52.381 0.00 0.00 0.00 3.95
211 212 1.798813 GTGGTGCAAGTAGAAGTTCGG 59.201 52.381 0.00 0.00 0.00 4.30
212 213 1.270625 TGGTGCAAGTAGAAGTTCGGG 60.271 52.381 0.00 0.00 0.00 5.14
213 214 1.439679 GTGCAAGTAGAAGTTCGGGG 58.560 55.000 0.00 0.00 0.00 5.73
214 215 0.321298 TGCAAGTAGAAGTTCGGGGC 60.321 55.000 0.00 0.00 0.00 5.80
215 216 1.025113 GCAAGTAGAAGTTCGGGGCC 61.025 60.000 0.00 0.00 0.00 5.80
216 217 0.323629 CAAGTAGAAGTTCGGGGCCA 59.676 55.000 4.39 0.00 0.00 5.36
217 218 1.061546 AAGTAGAAGTTCGGGGCCAA 58.938 50.000 4.39 0.00 0.00 4.52
218 219 0.323957 AGTAGAAGTTCGGGGCCAAC 59.676 55.000 4.39 1.51 0.00 3.77
219 220 0.323957 GTAGAAGTTCGGGGCCAACT 59.676 55.000 4.39 4.37 35.51 3.16
220 221 0.323629 TAGAAGTTCGGGGCCAACTG 59.676 55.000 9.78 0.00 34.21 3.16
221 222 2.597510 AAGTTCGGGGCCAACTGC 60.598 61.111 9.78 0.00 34.21 4.40
242 243 4.367023 CCGTCGCGTGGGAAAGGA 62.367 66.667 5.77 0.00 0.00 3.36
243 244 3.110178 CGTCGCGTGGGAAAGGAC 61.110 66.667 5.77 0.00 0.00 3.85
244 245 3.110178 GTCGCGTGGGAAAGGACG 61.110 66.667 5.77 0.00 38.63 4.79
245 246 3.608662 TCGCGTGGGAAAGGACGT 61.609 61.111 5.77 0.00 37.89 4.34
246 247 2.663852 CGCGTGGGAAAGGACGTT 60.664 61.111 0.00 0.00 37.89 3.99
247 248 2.943653 GCGTGGGAAAGGACGTTG 59.056 61.111 0.00 0.00 37.89 4.10
248 249 2.943653 CGTGGGAAAGGACGTTGC 59.056 61.111 0.00 0.00 0.00 4.17
249 250 1.890041 CGTGGGAAAGGACGTTGCA 60.890 57.895 0.00 0.00 0.00 4.08
250 251 1.234615 CGTGGGAAAGGACGTTGCAT 61.235 55.000 0.00 0.00 0.00 3.96
251 252 0.958822 GTGGGAAAGGACGTTGCATT 59.041 50.000 0.00 0.00 0.00 3.56
252 253 0.958091 TGGGAAAGGACGTTGCATTG 59.042 50.000 0.00 0.00 0.00 2.82
253 254 0.388520 GGGAAAGGACGTTGCATTGC 60.389 55.000 0.46 0.46 0.00 3.56
254 255 0.313672 GGAAAGGACGTTGCATTGCA 59.686 50.000 7.38 7.38 36.47 4.08
255 256 1.067635 GGAAAGGACGTTGCATTGCAT 60.068 47.619 12.95 0.00 38.76 3.96
256 257 2.610232 GGAAAGGACGTTGCATTGCATT 60.610 45.455 12.95 1.36 38.76 3.56
257 258 2.352503 AAGGACGTTGCATTGCATTC 57.647 45.000 12.95 9.22 38.76 2.67
258 259 0.168788 AGGACGTTGCATTGCATTCG 59.831 50.000 24.51 24.51 38.76 3.34
259 260 0.167908 GGACGTTGCATTGCATTCGA 59.832 50.000 29.39 9.57 38.76 3.71
260 261 1.202177 GGACGTTGCATTGCATTCGAT 60.202 47.619 29.39 19.20 38.76 3.59
261 262 1.841944 GACGTTGCATTGCATTCGATG 59.158 47.619 29.39 17.03 38.76 3.84
262 263 1.193644 CGTTGCATTGCATTCGATGG 58.806 50.000 22.97 3.38 38.76 3.51
263 264 0.925466 GTTGCATTGCATTCGATGGC 59.075 50.000 12.95 2.14 38.76 4.40
264 265 0.818938 TTGCATTGCATTCGATGGCT 59.181 45.000 12.95 0.00 38.76 4.75
265 266 0.101579 TGCATTGCATTCGATGGCTG 59.898 50.000 7.38 2.91 35.15 4.85
266 267 0.596600 GCATTGCATTCGATGGCTGG 60.597 55.000 3.15 1.88 35.15 4.85
267 268 0.596600 CATTGCATTCGATGGCTGGC 60.597 55.000 9.79 0.00 31.71 4.85
268 269 0.754217 ATTGCATTCGATGGCTGGCT 60.754 50.000 9.79 0.00 0.00 4.75
269 270 1.659622 TTGCATTCGATGGCTGGCTG 61.660 55.000 9.79 0.00 0.00 4.85
270 271 2.842256 GCATTCGATGGCTGGCTGG 61.842 63.158 2.00 0.00 0.00 4.85
271 272 1.153107 CATTCGATGGCTGGCTGGA 60.153 57.895 2.00 0.00 0.00 3.86
272 273 1.147824 ATTCGATGGCTGGCTGGAG 59.852 57.895 2.00 0.00 0.00 3.86
273 274 1.630126 ATTCGATGGCTGGCTGGAGT 61.630 55.000 2.00 0.00 0.00 3.85
274 275 2.513204 CGATGGCTGGCTGGAGTG 60.513 66.667 2.00 0.00 0.00 3.51
275 276 2.124403 GATGGCTGGCTGGAGTGG 60.124 66.667 2.00 0.00 0.00 4.00
276 277 4.437587 ATGGCTGGCTGGAGTGGC 62.438 66.667 2.00 0.00 0.00 5.01
282 283 4.082523 GGCTGGAGTGGCTGCGTA 62.083 66.667 0.00 0.00 0.00 4.42
283 284 2.047274 GCTGGAGTGGCTGCGTAA 60.047 61.111 0.00 0.00 0.00 3.18
284 285 2.103042 GCTGGAGTGGCTGCGTAAG 61.103 63.158 0.00 0.00 43.44 2.34
285 286 1.591703 CTGGAGTGGCTGCGTAAGA 59.408 57.895 0.00 0.00 43.02 2.10
286 287 0.176680 CTGGAGTGGCTGCGTAAGAT 59.823 55.000 0.00 0.00 43.02 2.40
287 288 1.409064 CTGGAGTGGCTGCGTAAGATA 59.591 52.381 0.00 0.00 43.02 1.98
288 289 1.136305 TGGAGTGGCTGCGTAAGATAC 59.864 52.381 0.00 0.00 43.02 2.24
289 290 1.136305 GGAGTGGCTGCGTAAGATACA 59.864 52.381 0.00 0.00 43.02 2.29
290 291 2.224066 GGAGTGGCTGCGTAAGATACAT 60.224 50.000 0.00 0.00 43.02 2.29
291 292 2.797156 GAGTGGCTGCGTAAGATACATG 59.203 50.000 0.00 0.00 43.02 3.21
292 293 1.867233 GTGGCTGCGTAAGATACATGG 59.133 52.381 0.00 0.00 43.02 3.66
293 294 1.202639 TGGCTGCGTAAGATACATGGG 60.203 52.381 0.00 0.00 43.02 4.00
294 295 0.868406 GCTGCGTAAGATACATGGGC 59.132 55.000 0.00 0.00 43.02 5.36
295 296 1.139989 CTGCGTAAGATACATGGGCG 58.860 55.000 0.00 0.00 43.02 6.13
296 297 0.462375 TGCGTAAGATACATGGGCGT 59.538 50.000 0.00 0.00 43.02 5.68
297 298 1.682323 TGCGTAAGATACATGGGCGTA 59.318 47.619 0.00 0.00 43.02 4.42
298 299 2.297880 TGCGTAAGATACATGGGCGTAT 59.702 45.455 0.00 0.00 43.02 3.06
299 300 2.921754 GCGTAAGATACATGGGCGTATC 59.078 50.000 0.00 3.42 45.42 2.24
303 304 1.710013 GATACATGGGCGTATCGTGG 58.290 55.000 0.00 0.00 38.68 4.94
304 305 1.000506 GATACATGGGCGTATCGTGGT 59.999 52.381 0.00 0.00 38.68 4.16
305 306 0.103390 TACATGGGCGTATCGTGGTG 59.897 55.000 0.00 0.00 0.00 4.17
306 307 1.887242 CATGGGCGTATCGTGGTGG 60.887 63.158 0.00 0.00 0.00 4.61
307 308 2.061578 ATGGGCGTATCGTGGTGGA 61.062 57.895 0.00 0.00 0.00 4.02
308 309 1.618876 ATGGGCGTATCGTGGTGGAA 61.619 55.000 0.00 0.00 0.00 3.53
309 310 1.520787 GGGCGTATCGTGGTGGAAG 60.521 63.158 0.00 0.00 0.00 3.46
310 311 1.217244 GGCGTATCGTGGTGGAAGT 59.783 57.895 0.00 0.00 0.00 3.01
311 312 1.082117 GGCGTATCGTGGTGGAAGTG 61.082 60.000 0.00 0.00 0.00 3.16
312 313 0.108992 GCGTATCGTGGTGGAAGTGA 60.109 55.000 0.00 0.00 0.00 3.41
313 314 1.470979 GCGTATCGTGGTGGAAGTGAT 60.471 52.381 0.00 0.00 0.00 3.06
314 315 2.193447 CGTATCGTGGTGGAAGTGATG 58.807 52.381 0.00 0.00 0.00 3.07
315 316 2.550978 GTATCGTGGTGGAAGTGATGG 58.449 52.381 0.00 0.00 0.00 3.51
316 317 0.392998 ATCGTGGTGGAAGTGATGGC 60.393 55.000 0.00 0.00 0.00 4.40
317 318 1.003355 CGTGGTGGAAGTGATGGCT 60.003 57.895 0.00 0.00 0.00 4.75
318 319 1.300971 CGTGGTGGAAGTGATGGCTG 61.301 60.000 0.00 0.00 0.00 4.85
319 320 0.962356 GTGGTGGAAGTGATGGCTGG 60.962 60.000 0.00 0.00 0.00 4.85
320 321 1.380302 GGTGGAAGTGATGGCTGGT 59.620 57.895 0.00 0.00 0.00 4.00
321 322 0.678048 GGTGGAAGTGATGGCTGGTC 60.678 60.000 0.00 0.00 0.00 4.02
322 323 0.678048 GTGGAAGTGATGGCTGGTCC 60.678 60.000 0.00 0.00 0.00 4.46
330 331 2.124768 TGGCTGGTCCAGGGATCA 59.875 61.111 20.72 0.60 40.72 2.92
331 332 1.541118 TGGCTGGTCCAGGGATCAA 60.541 57.895 20.72 0.00 40.72 2.57
332 333 1.225704 GGCTGGTCCAGGGATCAAG 59.774 63.158 20.72 0.00 34.53 3.02
333 334 1.452833 GCTGGTCCAGGGATCAAGC 60.453 63.158 20.72 5.21 34.53 4.01
334 335 1.993653 CTGGTCCAGGGATCAAGCA 59.006 57.895 11.46 0.00 34.53 3.91
335 336 0.107312 CTGGTCCAGGGATCAAGCAG 60.107 60.000 11.46 0.00 34.53 4.24
336 337 0.547471 TGGTCCAGGGATCAAGCAGA 60.547 55.000 0.00 0.00 31.55 4.26
337 338 0.842635 GGTCCAGGGATCAAGCAGAT 59.157 55.000 0.00 0.00 40.48 2.90
348 349 3.957671 TCAAGCAGATCAAATCGATGC 57.042 42.857 0.00 0.00 33.17 3.91
349 350 3.272581 TCAAGCAGATCAAATCGATGCA 58.727 40.909 0.00 0.00 33.17 3.96
350 351 3.690628 TCAAGCAGATCAAATCGATGCAA 59.309 39.130 0.00 0.00 33.17 4.08
351 352 4.156373 TCAAGCAGATCAAATCGATGCAAA 59.844 37.500 0.00 0.00 33.17 3.68
352 353 4.913335 AGCAGATCAAATCGATGCAAAT 57.087 36.364 0.00 0.00 33.17 2.32
353 354 4.607955 AGCAGATCAAATCGATGCAAATG 58.392 39.130 0.00 0.00 33.17 2.32
354 355 4.337274 AGCAGATCAAATCGATGCAAATGA 59.663 37.500 0.00 0.00 33.17 2.57
355 356 5.038683 GCAGATCAAATCGATGCAAATGAA 58.961 37.500 0.00 0.00 33.17 2.57
356 357 5.051907 GCAGATCAAATCGATGCAAATGAAC 60.052 40.000 0.00 0.00 33.17 3.18
357 358 5.170803 CAGATCAAATCGATGCAAATGAACG 59.829 40.000 0.00 0.00 33.17 3.95
358 359 3.757184 TCAAATCGATGCAAATGAACGG 58.243 40.909 0.00 0.00 0.00 4.44
359 360 2.193306 AATCGATGCAAATGAACGGC 57.807 45.000 0.00 0.00 0.00 5.68
360 361 1.382522 ATCGATGCAAATGAACGGCT 58.617 45.000 0.00 0.00 0.00 5.52
361 362 2.017138 TCGATGCAAATGAACGGCTA 57.983 45.000 0.00 0.00 0.00 3.93
362 363 1.933181 TCGATGCAAATGAACGGCTAG 59.067 47.619 0.00 0.00 0.00 3.42
363 364 1.595489 CGATGCAAATGAACGGCTAGC 60.595 52.381 6.04 6.04 0.00 3.42
364 365 0.740737 ATGCAAATGAACGGCTAGCC 59.259 50.000 24.75 24.75 0.00 3.93
365 366 0.607762 TGCAAATGAACGGCTAGCCA 60.608 50.000 32.47 14.42 35.37 4.75
366 367 0.099436 GCAAATGAACGGCTAGCCAG 59.901 55.000 32.47 25.43 35.37 4.85
367 368 0.734889 CAAATGAACGGCTAGCCAGG 59.265 55.000 32.47 19.84 35.37 4.45
368 369 1.032114 AAATGAACGGCTAGCCAGGC 61.032 55.000 32.47 20.10 43.81 4.85
380 381 4.326255 CCAGGCGGCTGATCTTTT 57.674 55.556 37.74 0.00 0.00 2.27
381 382 2.101700 CCAGGCGGCTGATCTTTTC 58.898 57.895 37.74 0.00 0.00 2.29
382 383 1.709147 CCAGGCGGCTGATCTTTTCG 61.709 60.000 37.74 16.15 0.00 3.46
383 384 1.021390 CAGGCGGCTGATCTTTTCGT 61.021 55.000 33.59 0.00 0.00 3.85
384 385 0.535335 AGGCGGCTGATCTTTTCGTA 59.465 50.000 12.25 0.00 0.00 3.43
385 386 1.066430 AGGCGGCTGATCTTTTCGTAA 60.066 47.619 12.25 0.00 0.00 3.18
386 387 1.327764 GGCGGCTGATCTTTTCGTAAG 59.672 52.381 0.00 0.00 0.00 2.34
397 398 3.935024 TCGTAAGATCAGCCGGCT 58.065 55.556 27.08 27.08 45.01 5.52
398 399 2.199117 TCGTAAGATCAGCCGGCTT 58.801 52.632 30.60 14.92 45.01 4.35
399 400 1.395635 TCGTAAGATCAGCCGGCTTA 58.604 50.000 30.60 21.93 45.01 3.09
400 401 1.066605 TCGTAAGATCAGCCGGCTTAC 59.933 52.381 30.60 24.41 45.01 2.34
401 402 1.488527 GTAAGATCAGCCGGCTTACG 58.511 55.000 30.60 17.08 43.80 3.18
402 403 0.249322 TAAGATCAGCCGGCTTACGC 60.249 55.000 30.60 16.67 42.52 4.42
418 419 2.358003 GCCTAGCAGCGGCCATAG 60.358 66.667 4.82 1.46 41.73 2.23
419 420 2.358003 CCTAGCAGCGGCCATAGC 60.358 66.667 4.82 2.26 42.56 2.97
420 421 2.423018 CTAGCAGCGGCCATAGCA 59.577 61.111 4.82 0.00 42.56 3.49
421 422 1.227645 CTAGCAGCGGCCATAGCAA 60.228 57.895 4.82 0.00 42.56 3.91
422 423 0.815213 CTAGCAGCGGCCATAGCAAA 60.815 55.000 4.82 0.00 42.56 3.68
423 424 0.393673 TAGCAGCGGCCATAGCAAAA 60.394 50.000 4.82 0.00 42.56 2.44
424 425 1.517039 GCAGCGGCCATAGCAAAAC 60.517 57.895 2.24 0.00 42.56 2.43
425 426 1.139520 CAGCGGCCATAGCAAAACC 59.860 57.895 2.24 0.00 42.56 3.27
426 427 2.052104 AGCGGCCATAGCAAAACCC 61.052 57.895 2.24 0.00 42.56 4.11
427 428 2.347322 GCGGCCATAGCAAAACCCA 61.347 57.895 2.24 0.00 42.56 4.51
428 429 1.675720 GCGGCCATAGCAAAACCCAT 61.676 55.000 2.24 0.00 42.56 4.00
429 430 0.385390 CGGCCATAGCAAAACCCATC 59.615 55.000 2.24 0.00 42.56 3.51
430 431 1.484038 GGCCATAGCAAAACCCATCA 58.516 50.000 0.00 0.00 42.56 3.07
431 432 1.136891 GGCCATAGCAAAACCCATCAC 59.863 52.381 0.00 0.00 42.56 3.06
432 433 1.824230 GCCATAGCAAAACCCATCACA 59.176 47.619 0.00 0.00 39.53 3.58
433 434 2.417243 GCCATAGCAAAACCCATCACAC 60.417 50.000 0.00 0.00 39.53 3.82
434 435 2.824936 CCATAGCAAAACCCATCACACA 59.175 45.455 0.00 0.00 0.00 3.72
435 436 3.448301 CCATAGCAAAACCCATCACACAT 59.552 43.478 0.00 0.00 0.00 3.21
436 437 4.081531 CCATAGCAAAACCCATCACACATT 60.082 41.667 0.00 0.00 0.00 2.71
437 438 5.481105 CATAGCAAAACCCATCACACATTT 58.519 37.500 0.00 0.00 0.00 2.32
438 439 3.731089 AGCAAAACCCATCACACATTTG 58.269 40.909 0.00 0.00 0.00 2.32
439 440 2.223845 GCAAAACCCATCACACATTTGC 59.776 45.455 5.43 5.43 43.67 3.68
440 441 3.464907 CAAAACCCATCACACATTTGCA 58.535 40.909 0.00 0.00 0.00 4.08
441 442 2.818130 AACCCATCACACATTTGCAC 57.182 45.000 0.00 0.00 0.00 4.57
442 443 0.968405 ACCCATCACACATTTGCACC 59.032 50.000 0.00 0.00 0.00 5.01
443 444 0.967662 CCCATCACACATTTGCACCA 59.032 50.000 0.00 0.00 0.00 4.17
444 445 1.337074 CCCATCACACATTTGCACCAC 60.337 52.381 0.00 0.00 0.00 4.16
445 446 1.337074 CCATCACACATTTGCACCACC 60.337 52.381 0.00 0.00 0.00 4.61
446 447 1.340568 CATCACACATTTGCACCACCA 59.659 47.619 0.00 0.00 0.00 4.17
447 448 0.743688 TCACACATTTGCACCACCAC 59.256 50.000 0.00 0.00 0.00 4.16
448 449 0.459078 CACACATTTGCACCACCACA 59.541 50.000 0.00 0.00 0.00 4.17
449 450 1.068895 CACACATTTGCACCACCACAT 59.931 47.619 0.00 0.00 0.00 3.21
450 451 1.068895 ACACATTTGCACCACCACATG 59.931 47.619 0.00 0.00 0.00 3.21
451 452 1.340568 CACATTTGCACCACCACATGA 59.659 47.619 0.00 0.00 29.79 3.07
452 453 2.028839 CACATTTGCACCACCACATGAT 60.029 45.455 0.00 0.00 29.79 2.45
453 454 3.193056 CACATTTGCACCACCACATGATA 59.807 43.478 0.00 0.00 29.79 2.15
454 455 4.025360 ACATTTGCACCACCACATGATAT 58.975 39.130 0.00 0.00 29.79 1.63
455 456 4.142116 ACATTTGCACCACCACATGATATG 60.142 41.667 0.00 0.00 29.79 1.78
456 457 2.055684 TGCACCACCACATGATATGG 57.944 50.000 0.00 6.02 43.43 2.74
467 468 5.300752 CCACATGATATGGTACTGAAGACC 58.699 45.833 0.00 0.00 37.49 3.85
472 473 3.906660 TGGTACTGAAGACCAAGCG 57.093 52.632 0.00 0.00 44.08 4.68
473 474 0.320374 TGGTACTGAAGACCAAGCGG 59.680 55.000 0.00 0.00 44.08 5.52
474 475 1.019805 GGTACTGAAGACCAAGCGGC 61.020 60.000 0.00 0.00 36.91 6.53
475 476 1.019805 GTACTGAAGACCAAGCGGCC 61.020 60.000 0.00 0.00 34.57 6.13
476 477 1.192146 TACTGAAGACCAAGCGGCCT 61.192 55.000 0.00 0.00 34.57 5.19
477 478 2.032528 TGAAGACCAAGCGGCCTG 59.967 61.111 0.00 0.00 34.57 4.85
478 479 3.435186 GAAGACCAAGCGGCCTGC 61.435 66.667 11.02 11.02 46.98 4.85
516 517 5.643379 AAAATTGCTATCAATGACACGGT 57.357 34.783 0.00 0.00 41.77 4.83
527 528 4.025563 TCAATGACACGGTACTGAAAAACG 60.026 41.667 9.17 0.00 0.00 3.60
528 529 2.203401 TGACACGGTACTGAAAAACGG 58.797 47.619 9.17 0.00 0.00 4.44
559 560 5.645497 CCATGAAAGATCCGATCCTAAATCC 59.355 44.000 4.67 0.00 0.00 3.01
571 572 6.212791 CCGATCCTAAATCCATTTCTAGGGTA 59.787 42.308 0.00 0.00 30.15 3.69
678 679 2.759560 GTTGGCCGGGCAATGGAT 60.760 61.111 41.30 0.00 0.00 3.41
782 783 1.205417 CACAGCCCATGAAAATCCCAC 59.795 52.381 0.00 0.00 0.00 4.61
808 809 1.209504 CTTCCCAGCCACGAAATCCTA 59.790 52.381 0.00 0.00 0.00 2.94
857 860 1.727335 GTGAACAACGAGGAAGCTAGC 59.273 52.381 6.62 6.62 0.00 3.42
910 913 2.359478 AATTCGTGTGGACGCCCC 60.359 61.111 0.00 0.00 45.68 5.80
1596 1619 3.758133 GATGGAGGCCGGGGAGAGA 62.758 68.421 2.18 0.00 0.00 3.10
1798 1822 1.153369 GCGCTGCTGAGGAATACCA 60.153 57.895 0.00 0.00 38.94 3.25
2700 2724 1.052124 TGAGGGTCGTCACCAACCTT 61.052 55.000 0.00 0.00 45.94 3.50
2766 2790 2.362120 TTCGGGAGGGAGGTCGTC 60.362 66.667 0.00 0.00 0.00 4.20
2867 2891 5.987098 AGCTGTGAACTGTATCAGATTCAT 58.013 37.500 3.70 0.00 35.64 2.57
2871 2895 7.440556 GCTGTGAACTGTATCAGATTCATATGT 59.559 37.037 1.90 0.00 35.64 2.29
2985 3010 6.155910 AGCCAGGATTATATGGTGTAGATCAG 59.844 42.308 0.00 0.00 38.91 2.90
2989 3014 6.498303 AGGATTATATGGTGTAGATCAGTGCA 59.502 38.462 0.00 0.00 0.00 4.57
3028 3054 7.806690 TGTAATGTGCTGTACTTGAAAATCTC 58.193 34.615 0.00 0.00 0.00 2.75
3135 3171 1.089920 GTCATGACATGGCTGGTCAC 58.910 55.000 21.07 0.00 46.99 3.67
3136 3172 0.691904 TCATGACATGGCTGGTCACA 59.308 50.000 15.37 2.33 46.99 3.58
3147 3183 1.382522 CTGGTCACAGTGTTGCAAGT 58.617 50.000 0.00 0.00 39.92 3.16
3149 3185 0.381801 GGTCACAGTGTTGCAAGTGG 59.618 55.000 14.44 2.04 33.01 4.00
3154 3190 0.820891 CAGTGTTGCAAGTGGAGGCT 60.821 55.000 0.00 0.00 0.00 4.58
3182 3218 2.753043 TCGACTCCGTACCAGGGC 60.753 66.667 0.00 0.00 37.05 5.19
3215 3252 1.149987 GTGACGGCAACACGGATAAA 58.850 50.000 0.00 0.00 38.39 1.40
3217 3254 0.094046 GACGGCAACACGGATAAACG 59.906 55.000 0.00 0.00 38.39 3.60
3219 3256 1.336702 ACGGCAACACGGATAAACGTA 60.337 47.619 0.00 0.00 46.75 3.57
3220 3257 1.059549 CGGCAACACGGATAAACGTAC 59.940 52.381 0.00 0.00 46.75 3.67
3221 3258 2.067766 GGCAACACGGATAAACGTACA 58.932 47.619 0.00 0.00 46.75 2.90
3222 3259 2.159801 GGCAACACGGATAAACGTACAC 60.160 50.000 0.00 0.00 46.75 2.90
3223 3260 2.733026 GCAACACGGATAAACGTACACT 59.267 45.455 0.00 0.00 46.75 3.55
3224 3261 3.919804 GCAACACGGATAAACGTACACTA 59.080 43.478 0.00 0.00 46.75 2.74
3228 3265 6.494893 ACACGGATAAACGTACACTACTAA 57.505 37.500 0.00 0.00 46.75 2.24
3264 3301 5.063880 GGACCCAATATACACCTGATGTTC 58.936 45.833 0.00 0.00 43.19 3.18
3270 3307 3.526931 ATACACCTGATGTTCCGTCTG 57.473 47.619 0.00 0.00 43.19 3.51
3280 3317 2.445614 TCCGTCTGGAAGGCTCCT 59.554 61.111 0.00 0.00 42.85 3.69
3288 3325 2.091830 TCTGGAAGGCTCCTAGATCGAA 60.092 50.000 0.00 0.00 42.94 3.71
3290 3327 1.001158 GGAAGGCTCCTAGATCGAACG 60.001 57.143 0.00 0.00 38.88 3.95
3298 3335 4.745649 CTCCTAGATCGAACGAAAGGTTT 58.254 43.478 16.85 0.00 39.50 3.27
3300 3337 3.062234 CCTAGATCGAACGAAAGGTTTGC 59.938 47.826 0.12 0.00 39.50 3.68
3302 3339 0.515564 ATCGAACGAAAGGTTTGCCG 59.484 50.000 0.12 0.00 39.50 5.69
3304 3341 0.515564 CGAACGAAAGGTTTGCCGAT 59.484 50.000 0.00 0.00 39.50 4.18
3332 3369 4.615157 ATGATCGATCGAACGAAAATCG 57.385 40.909 23.50 8.92 45.16 3.34
3341 3378 2.854777 CGAACGAAAATCGCTCTCTCAT 59.145 45.455 0.00 0.00 45.12 2.90
3342 3379 4.035684 CGAACGAAAATCGCTCTCTCATA 58.964 43.478 0.00 0.00 45.12 2.15
3343 3380 4.677378 CGAACGAAAATCGCTCTCTCATAT 59.323 41.667 0.00 0.00 45.12 1.78
3344 3381 5.851703 CGAACGAAAATCGCTCTCTCATATA 59.148 40.000 0.00 0.00 45.12 0.86
3345 3382 6.359883 CGAACGAAAATCGCTCTCTCATATAA 59.640 38.462 0.00 0.00 45.12 0.98
3347 3384 9.343103 GAACGAAAATCGCTCTCTCATATAATA 57.657 33.333 0.00 0.00 45.12 0.98
3349 3386 8.297426 ACGAAAATCGCTCTCTCATATAATACA 58.703 33.333 0.00 0.00 45.12 2.29
3350 3387 9.129209 CGAAAATCGCTCTCTCATATAATACAA 57.871 33.333 0.00 0.00 31.14 2.41
3388 3464 4.519540 ACGAATTACAAATGCCAAGCTT 57.480 36.364 0.00 0.00 0.00 3.74
3389 3465 4.236935 ACGAATTACAAATGCCAAGCTTG 58.763 39.130 19.93 19.93 0.00 4.01
3445 3521 8.593492 AAAAGACTATGAAAAATCAAGGCAAC 57.407 30.769 0.00 0.00 0.00 4.17
3446 3522 6.272822 AGACTATGAAAAATCAAGGCAACC 57.727 37.500 0.00 0.00 37.17 3.77
3471 3547 7.254852 CCGTATACAAGTTTACATGGCAAAAT 58.745 34.615 3.32 0.00 0.00 1.82
3481 3557 7.178274 AGTTTACATGGCAAAATCCAACTATCA 59.822 33.333 0.00 0.00 39.96 2.15
3509 3589 6.402442 GCAACAGATAATTTCCATGGCAAAAC 60.402 38.462 6.96 0.00 0.00 2.43
3547 3627 8.629158 TGCAAATTGTATGATGACTATTAACCC 58.371 33.333 0.00 0.00 0.00 4.11
3548 3628 8.082242 GCAAATTGTATGATGACTATTAACCCC 58.918 37.037 0.00 0.00 0.00 4.95
3587 3670 9.598517 TGGCTAAAAATAAAAATCACCATGATC 57.401 29.630 0.00 0.00 35.76 2.92
3588 3671 9.045223 GGCTAAAAATAAAAATCACCATGATCC 57.955 33.333 0.00 0.00 35.76 3.36
3647 3734 3.258123 ACCATGGTCTAAAAACATGCCAC 59.742 43.478 13.00 0.00 40.38 5.01
3654 3741 3.815962 TCTAAAAACATGCCACGCTACAA 59.184 39.130 0.00 0.00 0.00 2.41
3672 3759 7.172361 ACGCTACAAAAATTAAAATTGCCATGT 59.828 29.630 0.00 0.00 0.00 3.21
3757 3845 4.799564 TTCCATGGTCACTAAAATTGCC 57.200 40.909 12.58 0.00 0.00 4.52
3758 3846 3.772387 TCCATGGTCACTAAAATTGCCA 58.228 40.909 12.58 0.00 0.00 4.92
3759 3847 4.352009 TCCATGGTCACTAAAATTGCCAT 58.648 39.130 12.58 0.00 37.21 4.40
3761 3849 4.435425 CATGGTCACTAAAATTGCCATGG 58.565 43.478 7.63 7.63 45.56 3.66
3762 3850 3.505386 TGGTCACTAAAATTGCCATGGT 58.495 40.909 14.67 0.00 0.00 3.55
3763 3851 3.900601 TGGTCACTAAAATTGCCATGGTT 59.099 39.130 14.67 1.29 0.00 3.67
3764 3852 4.021544 TGGTCACTAAAATTGCCATGGTTC 60.022 41.667 14.67 0.00 0.00 3.62
3765 3853 4.021544 GGTCACTAAAATTGCCATGGTTCA 60.022 41.667 14.67 0.00 0.00 3.18
3766 3854 5.337491 GGTCACTAAAATTGCCATGGTTCAT 60.337 40.000 14.67 0.00 0.00 2.57
3767 3855 6.127479 GGTCACTAAAATTGCCATGGTTCATA 60.127 38.462 14.67 0.00 0.00 2.15
3768 3856 6.751888 GTCACTAAAATTGCCATGGTTCATAC 59.248 38.462 14.67 0.00 0.00 2.39
3769 3857 6.435591 TCACTAAAATTGCCATGGTTCATACA 59.564 34.615 14.67 0.00 0.00 2.29
3770 3858 6.531240 CACTAAAATTGCCATGGTTCATACAC 59.469 38.462 14.67 0.00 0.00 2.90
3771 3859 5.743636 AAAATTGCCATGGTTCATACACT 57.256 34.783 14.67 0.00 0.00 3.55
3772 3860 6.849085 AAAATTGCCATGGTTCATACACTA 57.151 33.333 14.67 0.00 0.00 2.74
3773 3861 6.849085 AAATTGCCATGGTTCATACACTAA 57.151 33.333 14.67 0.00 0.00 2.24
3774 3862 7.422465 AAATTGCCATGGTTCATACACTAAT 57.578 32.000 14.67 0.00 0.00 1.73
3775 3863 7.422465 AATTGCCATGGTTCATACACTAATT 57.578 32.000 14.67 3.04 0.00 1.40
3776 3864 6.849085 TTGCCATGGTTCATACACTAATTT 57.151 33.333 14.67 0.00 0.00 1.82
3777 3865 6.849085 TGCCATGGTTCATACACTAATTTT 57.151 33.333 14.67 0.00 0.00 1.82
3778 3866 6.629128 TGCCATGGTTCATACACTAATTTTG 58.371 36.000 14.67 0.00 0.00 2.44
3779 3867 5.519927 GCCATGGTTCATACACTAATTTTGC 59.480 40.000 14.67 0.00 0.00 3.68
3780 3868 6.042143 CCATGGTTCATACACTAATTTTGCC 58.958 40.000 2.57 0.00 0.00 4.52
3781 3869 6.350864 CCATGGTTCATACACTAATTTTGCCA 60.351 38.462 2.57 0.00 0.00 4.92
3782 3870 6.849085 TGGTTCATACACTAATTTTGCCAT 57.151 33.333 0.00 0.00 0.00 4.40
3783 3871 6.629128 TGGTTCATACACTAATTTTGCCATG 58.371 36.000 0.00 0.00 0.00 3.66
3784 3872 6.435591 TGGTTCATACACTAATTTTGCCATGA 59.564 34.615 0.00 0.00 0.00 3.07
3785 3873 7.123997 TGGTTCATACACTAATTTTGCCATGAT 59.876 33.333 0.00 0.00 0.00 2.45
3786 3874 7.436080 GGTTCATACACTAATTTTGCCATGATG 59.564 37.037 0.00 0.00 0.00 3.07
3787 3875 6.506147 TCATACACTAATTTTGCCATGATGC 58.494 36.000 0.00 0.00 0.00 3.91
3788 3876 4.804868 ACACTAATTTTGCCATGATGCA 57.195 36.364 0.00 0.00 40.07 3.96
3789 3877 5.347620 ACACTAATTTTGCCATGATGCAT 57.652 34.783 0.00 0.00 41.70 3.96
3790 3878 6.468333 ACACTAATTTTGCCATGATGCATA 57.532 33.333 0.00 0.00 41.70 3.14
3791 3879 6.275335 ACACTAATTTTGCCATGATGCATAC 58.725 36.000 0.00 0.00 41.70 2.39
3792 3880 6.127394 ACACTAATTTTGCCATGATGCATACA 60.127 34.615 0.00 0.00 41.70 2.29
3793 3881 6.757478 CACTAATTTTGCCATGATGCATACAA 59.243 34.615 0.00 0.00 41.70 2.41
3794 3882 7.439955 CACTAATTTTGCCATGATGCATACAAT 59.560 33.333 0.00 0.00 41.70 2.71
3795 3883 8.640651 ACTAATTTTGCCATGATGCATACAATA 58.359 29.630 0.00 0.00 41.70 1.90
3796 3884 9.478768 CTAATTTTGCCATGATGCATACAATAA 57.521 29.630 0.00 0.00 41.70 1.40
3797 3885 8.911918 AATTTTGCCATGATGCATACAATAAT 57.088 26.923 0.00 1.33 41.70 1.28
3798 3886 8.911918 ATTTTGCCATGATGCATACAATAATT 57.088 26.923 0.00 0.00 41.70 1.40
3799 3887 8.734218 TTTTGCCATGATGCATACAATAATTT 57.266 26.923 0.00 0.00 41.70 1.82
3800 3888 8.734218 TTTGCCATGATGCATACAATAATTTT 57.266 26.923 0.00 0.00 41.70 1.82
3801 3889 8.734218 TTGCCATGATGCATACAATAATTTTT 57.266 26.923 0.00 0.00 41.70 1.94
3823 3911 7.565323 TTTTTCCATGATCCCAAAACAAAAG 57.435 32.000 0.00 0.00 0.00 2.27
3824 3912 5.885449 TTCCATGATCCCAAAACAAAAGT 57.115 34.783 0.00 0.00 0.00 2.66
3825 3913 5.885449 TCCATGATCCCAAAACAAAAGTT 57.115 34.783 0.00 0.00 0.00 2.66
3826 3914 5.609423 TCCATGATCCCAAAACAAAAGTTG 58.391 37.500 0.00 0.00 0.00 3.16
3827 3915 5.365025 TCCATGATCCCAAAACAAAAGTTGA 59.635 36.000 0.00 0.00 0.00 3.18
3828 3916 5.466393 CCATGATCCCAAAACAAAAGTTGAC 59.534 40.000 0.00 0.00 0.00 3.18
3829 3917 5.667539 TGATCCCAAAACAAAAGTTGACA 57.332 34.783 0.00 0.00 0.00 3.58
3830 3918 6.232581 TGATCCCAAAACAAAAGTTGACAT 57.767 33.333 0.00 0.00 0.00 3.06
3831 3919 6.047870 TGATCCCAAAACAAAAGTTGACATG 58.952 36.000 0.00 0.00 0.00 3.21
3832 3920 5.667539 TCCCAAAACAAAAGTTGACATGA 57.332 34.783 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.023591 GCTTCGTAACAGCACCGGC 62.024 63.158 0.00 0.00 37.22 6.13
4 5 1.666553 TGCTTCGTAACAGCACCGG 60.667 57.895 0.00 0.00 42.49 5.28
5 6 3.945436 TGCTTCGTAACAGCACCG 58.055 55.556 0.00 0.00 42.49 4.94
9 10 0.294887 CGTCGATGCTTCGTAACAGC 59.705 55.000 19.92 5.88 45.65 4.40
10 11 0.914551 CCGTCGATGCTTCGTAACAG 59.085 55.000 19.92 9.27 45.65 3.16
11 12 0.457166 CCCGTCGATGCTTCGTAACA 60.457 55.000 19.92 0.00 45.65 2.41
12 13 0.457337 ACCCGTCGATGCTTCGTAAC 60.457 55.000 19.92 11.76 45.65 2.50
13 14 0.179156 GACCCGTCGATGCTTCGTAA 60.179 55.000 19.92 0.77 45.65 3.18
14 15 1.430632 GACCCGTCGATGCTTCGTA 59.569 57.895 19.92 6.06 45.65 3.43
15 16 2.181021 GACCCGTCGATGCTTCGT 59.819 61.111 19.92 2.02 45.65 3.85
30 31 3.768185 TTAGCGATGCTCCGGCGAC 62.768 63.158 9.30 0.00 40.44 5.19
31 32 2.856628 ATTAGCGATGCTCCGGCGA 61.857 57.895 9.30 0.00 40.44 5.54
32 33 2.356313 ATTAGCGATGCTCCGGCG 60.356 61.111 0.00 0.00 40.44 6.46
33 34 3.248029 CATTAGCGATGCTCCGGC 58.752 61.111 0.00 0.00 40.44 6.13
44 45 3.137533 GACCATCTCCTGAAGCATTAGC 58.862 50.000 0.00 0.00 42.56 3.09
45 46 3.388308 CGACCATCTCCTGAAGCATTAG 58.612 50.000 0.00 0.00 0.00 1.73
46 47 2.483714 GCGACCATCTCCTGAAGCATTA 60.484 50.000 0.00 0.00 0.00 1.90
47 48 1.745141 GCGACCATCTCCTGAAGCATT 60.745 52.381 0.00 0.00 0.00 3.56
48 49 0.179062 GCGACCATCTCCTGAAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
49 50 1.219124 GCGACCATCTCCTGAAGCA 59.781 57.895 0.00 0.00 0.00 3.91
50 51 0.391661 TTGCGACCATCTCCTGAAGC 60.392 55.000 0.00 0.00 0.00 3.86
51 52 2.322355 ATTGCGACCATCTCCTGAAG 57.678 50.000 0.00 0.00 0.00 3.02
52 53 2.358957 CAATTGCGACCATCTCCTGAA 58.641 47.619 0.00 0.00 0.00 3.02
53 54 2.013563 GCAATTGCGACCATCTCCTGA 61.014 52.381 15.87 0.00 0.00 3.86
54 55 0.379669 GCAATTGCGACCATCTCCTG 59.620 55.000 15.87 0.00 0.00 3.86
55 56 2.785868 GCAATTGCGACCATCTCCT 58.214 52.632 15.87 0.00 0.00 3.69
66 67 2.502510 CAGCACCGACGCAATTGC 60.503 61.111 20.76 20.76 35.08 3.56
67 68 2.502510 GCAGCACCGACGCAATTG 60.503 61.111 0.00 0.00 0.00 2.32
68 69 2.969806 CTGCAGCACCGACGCAATT 61.970 57.895 0.00 0.00 34.75 2.32
69 70 3.425713 CTGCAGCACCGACGCAAT 61.426 61.111 0.00 0.00 34.75 3.56
88 89 4.662961 TCGTCAGCACTGGCCACG 62.663 66.667 0.00 1.36 44.21 4.94
89 90 2.740055 CTCGTCAGCACTGGCCAC 60.740 66.667 0.00 0.00 42.56 5.01
90 91 4.687215 GCTCGTCAGCACTGGCCA 62.687 66.667 4.71 4.71 46.06 5.36
109 110 3.097114 GAAAGCAAAACGCCGGCG 61.097 61.111 44.88 44.88 44.04 6.46
110 111 2.016165 CTGAAAGCAAAACGCCGGC 61.016 57.895 19.07 19.07 44.04 6.13
111 112 0.240945 ATCTGAAAGCAAAACGCCGG 59.759 50.000 0.00 0.00 44.04 6.13
112 113 1.069296 TCATCTGAAAGCAAAACGCCG 60.069 47.619 0.00 0.00 44.04 6.46
113 114 2.319472 GTCATCTGAAAGCAAAACGCC 58.681 47.619 0.00 0.00 44.04 5.68
114 115 2.319472 GGTCATCTGAAAGCAAAACGC 58.681 47.619 0.00 0.00 42.91 4.84
115 116 2.574322 CGGTCATCTGAAAGCAAAACG 58.426 47.619 0.00 0.00 0.00 3.60
116 117 2.293399 ACCGGTCATCTGAAAGCAAAAC 59.707 45.455 0.00 0.00 0.00 2.43
117 118 2.293122 CACCGGTCATCTGAAAGCAAAA 59.707 45.455 2.59 0.00 0.00 2.44
118 119 1.879380 CACCGGTCATCTGAAAGCAAA 59.121 47.619 2.59 0.00 0.00 3.68
119 120 1.071542 TCACCGGTCATCTGAAAGCAA 59.928 47.619 2.59 0.00 0.00 3.91
120 121 0.684535 TCACCGGTCATCTGAAAGCA 59.315 50.000 2.59 0.00 0.00 3.91
121 122 1.079503 GTCACCGGTCATCTGAAAGC 58.920 55.000 2.59 0.00 0.00 3.51
122 123 2.069273 GTGTCACCGGTCATCTGAAAG 58.931 52.381 2.59 0.00 0.00 2.62
123 124 1.414550 TGTGTCACCGGTCATCTGAAA 59.585 47.619 2.59 0.00 0.00 2.69
124 125 1.000843 CTGTGTCACCGGTCATCTGAA 59.999 52.381 2.59 0.00 0.00 3.02
125 126 0.603065 CTGTGTCACCGGTCATCTGA 59.397 55.000 2.59 0.00 0.00 3.27
126 127 1.016130 GCTGTGTCACCGGTCATCTG 61.016 60.000 2.59 0.00 0.00 2.90
127 128 1.188219 AGCTGTGTCACCGGTCATCT 61.188 55.000 2.59 0.00 0.00 2.90
128 129 1.016130 CAGCTGTGTCACCGGTCATC 61.016 60.000 2.59 0.00 0.00 2.92
129 130 1.004560 CAGCTGTGTCACCGGTCAT 60.005 57.895 2.59 0.00 0.00 3.06
130 131 1.471829 ATCAGCTGTGTCACCGGTCA 61.472 55.000 14.67 0.00 0.00 4.02
131 132 1.016130 CATCAGCTGTGTCACCGGTC 61.016 60.000 14.67 0.00 0.00 4.79
132 133 1.004560 CATCAGCTGTGTCACCGGT 60.005 57.895 14.67 0.00 0.00 5.28
133 134 2.393768 GCATCAGCTGTGTCACCGG 61.394 63.158 14.67 0.00 37.91 5.28
134 135 1.229975 TTGCATCAGCTGTGTCACCG 61.230 55.000 14.67 0.00 42.74 4.94
135 136 0.239347 GTTGCATCAGCTGTGTCACC 59.761 55.000 14.67 3.71 42.74 4.02
136 137 0.110509 CGTTGCATCAGCTGTGTCAC 60.111 55.000 14.67 10.60 42.74 3.67
137 138 0.532640 ACGTTGCATCAGCTGTGTCA 60.533 50.000 14.67 10.50 42.74 3.58
138 139 0.110509 CACGTTGCATCAGCTGTGTC 60.111 55.000 14.67 8.29 42.74 3.67
139 140 1.509644 CCACGTTGCATCAGCTGTGT 61.510 55.000 14.67 0.58 42.74 3.72
140 141 1.208358 CCACGTTGCATCAGCTGTG 59.792 57.895 14.67 12.33 42.74 3.66
141 142 1.071299 TCCACGTTGCATCAGCTGT 59.929 52.632 14.67 0.00 42.74 4.40
142 143 1.499056 GTCCACGTTGCATCAGCTG 59.501 57.895 7.63 7.63 42.74 4.24
143 144 2.029288 CGTCCACGTTGCATCAGCT 61.029 57.895 0.00 0.00 36.72 4.24
144 145 2.476051 CGTCCACGTTGCATCAGC 59.524 61.111 0.00 0.00 36.47 4.26
155 156 0.989890 GAGATGCAACGTACGTCCAC 59.010 55.000 23.05 14.26 0.00 4.02
156 157 0.455464 CGAGATGCAACGTACGTCCA 60.455 55.000 23.05 20.98 0.00 4.02
157 158 0.455633 ACGAGATGCAACGTACGTCC 60.456 55.000 23.05 15.96 40.92 4.79
158 159 0.633733 CACGAGATGCAACGTACGTC 59.366 55.000 23.05 10.89 40.76 4.34
159 160 2.720688 CACGAGATGCAACGTACGT 58.279 52.632 16.72 16.72 40.76 3.57
169 170 3.301906 CGAACTTCTACTTGCACGAGATG 59.698 47.826 0.00 0.51 0.00 2.90
170 171 3.057456 ACGAACTTCTACTTGCACGAGAT 60.057 43.478 0.00 0.00 0.00 2.75
171 172 2.292569 ACGAACTTCTACTTGCACGAGA 59.707 45.455 0.00 0.00 0.00 4.04
172 173 2.405357 CACGAACTTCTACTTGCACGAG 59.595 50.000 0.00 0.00 0.00 4.18
173 174 2.390938 CACGAACTTCTACTTGCACGA 58.609 47.619 0.00 0.00 0.00 4.35
174 175 1.455786 CCACGAACTTCTACTTGCACG 59.544 52.381 0.00 0.00 0.00 5.34
175 176 2.221055 CACCACGAACTTCTACTTGCAC 59.779 50.000 0.00 0.00 0.00 4.57
176 177 2.479837 CACCACGAACTTCTACTTGCA 58.520 47.619 0.00 0.00 0.00 4.08
177 178 1.194772 GCACCACGAACTTCTACTTGC 59.805 52.381 0.00 0.00 0.00 4.01
178 179 2.479837 TGCACCACGAACTTCTACTTG 58.520 47.619 0.00 0.00 0.00 3.16
179 180 2.902705 TGCACCACGAACTTCTACTT 57.097 45.000 0.00 0.00 0.00 2.24
180 181 2.102588 ACTTGCACCACGAACTTCTACT 59.897 45.455 0.00 0.00 0.00 2.57
181 182 2.480845 ACTTGCACCACGAACTTCTAC 58.519 47.619 0.00 0.00 0.00 2.59
182 183 2.902705 ACTTGCACCACGAACTTCTA 57.097 45.000 0.00 0.00 0.00 2.10
183 184 2.364324 TCTACTTGCACCACGAACTTCT 59.636 45.455 0.00 0.00 0.00 2.85
184 185 2.750948 TCTACTTGCACCACGAACTTC 58.249 47.619 0.00 0.00 0.00 3.01
185 186 2.902705 TCTACTTGCACCACGAACTT 57.097 45.000 0.00 0.00 0.00 2.66
186 187 2.102588 ACTTCTACTTGCACCACGAACT 59.897 45.455 0.00 0.00 0.00 3.01
187 188 2.480845 ACTTCTACTTGCACCACGAAC 58.519 47.619 0.00 0.00 0.00 3.95
188 189 2.902705 ACTTCTACTTGCACCACGAA 57.097 45.000 0.00 0.00 0.00 3.85
189 190 2.750948 GAACTTCTACTTGCACCACGA 58.249 47.619 0.00 0.00 0.00 4.35
190 191 1.455786 CGAACTTCTACTTGCACCACG 59.544 52.381 0.00 0.00 0.00 4.94
191 192 1.798813 CCGAACTTCTACTTGCACCAC 59.201 52.381 0.00 0.00 0.00 4.16
192 193 1.270625 CCCGAACTTCTACTTGCACCA 60.271 52.381 0.00 0.00 0.00 4.17
193 194 1.439679 CCCGAACTTCTACTTGCACC 58.560 55.000 0.00 0.00 0.00 5.01
194 195 1.439679 CCCCGAACTTCTACTTGCAC 58.560 55.000 0.00 0.00 0.00 4.57
195 196 0.321298 GCCCCGAACTTCTACTTGCA 60.321 55.000 0.00 0.00 0.00 4.08
196 197 1.025113 GGCCCCGAACTTCTACTTGC 61.025 60.000 0.00 0.00 0.00 4.01
197 198 0.323629 TGGCCCCGAACTTCTACTTG 59.676 55.000 0.00 0.00 0.00 3.16
198 199 1.061546 TTGGCCCCGAACTTCTACTT 58.938 50.000 0.00 0.00 0.00 2.24
199 200 0.323957 GTTGGCCCCGAACTTCTACT 59.676 55.000 0.00 0.00 0.00 2.57
200 201 0.323957 AGTTGGCCCCGAACTTCTAC 59.676 55.000 0.00 0.00 28.94 2.59
201 202 0.323629 CAGTTGGCCCCGAACTTCTA 59.676 55.000 0.00 0.00 31.05 2.10
202 203 1.073199 CAGTTGGCCCCGAACTTCT 59.927 57.895 0.00 0.00 31.05 2.85
203 204 2.626780 GCAGTTGGCCCCGAACTTC 61.627 63.158 0.00 0.00 36.11 3.01
204 205 2.597510 GCAGTTGGCCCCGAACTT 60.598 61.111 0.00 0.00 36.11 2.66
225 226 4.367023 TCCTTTCCCACGCGACGG 62.367 66.667 15.93 13.26 0.00 4.79
226 227 3.110178 GTCCTTTCCCACGCGACG 61.110 66.667 15.93 2.53 0.00 5.12
227 228 3.110178 CGTCCTTTCCCACGCGAC 61.110 66.667 15.93 0.00 0.00 5.19
228 229 3.154584 AACGTCCTTTCCCACGCGA 62.155 57.895 15.93 0.00 39.73 5.87
229 230 2.663852 AACGTCCTTTCCCACGCG 60.664 61.111 3.53 3.53 39.73 6.01
230 231 2.943653 CAACGTCCTTTCCCACGC 59.056 61.111 0.00 0.00 39.73 5.34
231 232 1.234615 ATGCAACGTCCTTTCCCACG 61.235 55.000 0.00 0.00 41.90 4.94
232 233 0.958822 AATGCAACGTCCTTTCCCAC 59.041 50.000 0.00 0.00 0.00 4.61
233 234 0.958091 CAATGCAACGTCCTTTCCCA 59.042 50.000 0.00 0.00 0.00 4.37
234 235 0.388520 GCAATGCAACGTCCTTTCCC 60.389 55.000 0.00 0.00 0.00 3.97
235 236 0.313672 TGCAATGCAACGTCCTTTCC 59.686 50.000 5.01 0.00 34.76 3.13
236 237 2.352503 ATGCAATGCAACGTCCTTTC 57.647 45.000 13.45 0.00 43.62 2.62
237 238 2.676076 GAATGCAATGCAACGTCCTTT 58.324 42.857 13.45 0.00 43.62 3.11
238 239 1.401409 CGAATGCAATGCAACGTCCTT 60.401 47.619 22.43 9.12 43.62 3.36
239 240 0.168788 CGAATGCAATGCAACGTCCT 59.831 50.000 22.43 0.98 43.62 3.85
240 241 0.167908 TCGAATGCAATGCAACGTCC 59.832 50.000 26.63 10.37 43.62 4.79
241 242 1.841944 CATCGAATGCAATGCAACGTC 59.158 47.619 26.63 17.68 43.62 4.34
242 243 1.467883 CCATCGAATGCAATGCAACGT 60.468 47.619 26.63 16.75 43.62 3.99
243 244 1.193644 CCATCGAATGCAATGCAACG 58.806 50.000 23.89 23.89 43.62 4.10
244 245 0.925466 GCCATCGAATGCAATGCAAC 59.075 50.000 13.45 8.84 43.62 4.17
245 246 0.818938 AGCCATCGAATGCAATGCAA 59.181 45.000 13.45 0.00 43.62 4.08
246 247 0.101579 CAGCCATCGAATGCAATGCA 59.898 50.000 11.44 11.44 44.86 3.96
247 248 0.596600 CCAGCCATCGAATGCAATGC 60.597 55.000 11.50 0.00 0.00 3.56
248 249 0.596600 GCCAGCCATCGAATGCAATG 60.597 55.000 11.50 0.00 0.00 2.82
249 250 0.754217 AGCCAGCCATCGAATGCAAT 60.754 50.000 11.50 0.00 0.00 3.56
250 251 1.378911 AGCCAGCCATCGAATGCAA 60.379 52.632 11.50 0.00 0.00 4.08
251 252 2.116533 CAGCCAGCCATCGAATGCA 61.117 57.895 11.50 0.00 0.00 3.96
252 253 2.719979 CAGCCAGCCATCGAATGC 59.280 61.111 0.00 0.00 0.00 3.56
253 254 1.153107 TCCAGCCAGCCATCGAATG 60.153 57.895 0.00 0.00 0.00 2.67
254 255 1.147824 CTCCAGCCAGCCATCGAAT 59.852 57.895 0.00 0.00 0.00 3.34
255 256 2.293318 ACTCCAGCCAGCCATCGAA 61.293 57.895 0.00 0.00 0.00 3.71
256 257 2.685017 ACTCCAGCCAGCCATCGA 60.685 61.111 0.00 0.00 0.00 3.59
257 258 2.513204 CACTCCAGCCAGCCATCG 60.513 66.667 0.00 0.00 0.00 3.84
258 259 2.124403 CCACTCCAGCCAGCCATC 60.124 66.667 0.00 0.00 0.00 3.51
259 260 4.437587 GCCACTCCAGCCAGCCAT 62.438 66.667 0.00 0.00 0.00 4.40
265 266 3.605749 TTACGCAGCCACTCCAGCC 62.606 63.158 0.00 0.00 0.00 4.85
266 267 2.047274 TTACGCAGCCACTCCAGC 60.047 61.111 0.00 0.00 0.00 4.85
267 268 0.176680 ATCTTACGCAGCCACTCCAG 59.823 55.000 0.00 0.00 0.00 3.86
268 269 1.136305 GTATCTTACGCAGCCACTCCA 59.864 52.381 0.00 0.00 0.00 3.86
269 270 1.136305 TGTATCTTACGCAGCCACTCC 59.864 52.381 0.00 0.00 0.00 3.85
270 271 2.579207 TGTATCTTACGCAGCCACTC 57.421 50.000 0.00 0.00 0.00 3.51
271 272 2.483714 CCATGTATCTTACGCAGCCACT 60.484 50.000 0.00 0.00 0.00 4.00
272 273 1.867233 CCATGTATCTTACGCAGCCAC 59.133 52.381 0.00 0.00 0.00 5.01
273 274 1.202639 CCCATGTATCTTACGCAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
274 275 1.512926 CCCATGTATCTTACGCAGCC 58.487 55.000 0.00 0.00 0.00 4.85
275 276 0.868406 GCCCATGTATCTTACGCAGC 59.132 55.000 0.00 0.00 0.00 5.25
276 277 1.139989 CGCCCATGTATCTTACGCAG 58.860 55.000 0.00 0.00 0.00 5.18
277 278 0.462375 ACGCCCATGTATCTTACGCA 59.538 50.000 0.00 0.00 0.00 5.24
278 279 2.427232 TACGCCCATGTATCTTACGC 57.573 50.000 0.00 0.00 0.00 4.42
279 280 3.168963 CGATACGCCCATGTATCTTACG 58.831 50.000 10.98 0.00 45.49 3.18
280 281 3.918591 CACGATACGCCCATGTATCTTAC 59.081 47.826 10.98 0.00 45.49 2.34
281 282 3.057104 CCACGATACGCCCATGTATCTTA 60.057 47.826 10.98 0.00 45.49 2.10
282 283 2.288825 CCACGATACGCCCATGTATCTT 60.289 50.000 10.98 0.82 45.49 2.40
283 284 1.272490 CCACGATACGCCCATGTATCT 59.728 52.381 10.98 0.00 45.49 1.98
284 285 1.000506 ACCACGATACGCCCATGTATC 59.999 52.381 0.00 4.26 44.66 2.24
285 286 1.045407 ACCACGATACGCCCATGTAT 58.955 50.000 0.00 0.00 37.74 2.29
286 287 0.103390 CACCACGATACGCCCATGTA 59.897 55.000 0.00 0.00 0.00 2.29
287 288 1.153449 CACCACGATACGCCCATGT 60.153 57.895 0.00 0.00 0.00 3.21
288 289 1.887242 CCACCACGATACGCCCATG 60.887 63.158 0.00 0.00 0.00 3.66
289 290 1.618876 TTCCACCACGATACGCCCAT 61.619 55.000 0.00 0.00 0.00 4.00
290 291 2.233605 CTTCCACCACGATACGCCCA 62.234 60.000 0.00 0.00 0.00 5.36
291 292 1.520787 CTTCCACCACGATACGCCC 60.521 63.158 0.00 0.00 0.00 6.13
292 293 1.082117 CACTTCCACCACGATACGCC 61.082 60.000 0.00 0.00 0.00 5.68
293 294 0.108992 TCACTTCCACCACGATACGC 60.109 55.000 0.00 0.00 0.00 4.42
294 295 2.193447 CATCACTTCCACCACGATACG 58.807 52.381 0.00 0.00 0.00 3.06
295 296 2.550978 CCATCACTTCCACCACGATAC 58.449 52.381 0.00 0.00 0.00 2.24
296 297 1.134521 GCCATCACTTCCACCACGATA 60.135 52.381 0.00 0.00 0.00 2.92
297 298 0.392998 GCCATCACTTCCACCACGAT 60.393 55.000 0.00 0.00 0.00 3.73
298 299 1.003839 GCCATCACTTCCACCACGA 60.004 57.895 0.00 0.00 0.00 4.35
299 300 1.003355 AGCCATCACTTCCACCACG 60.003 57.895 0.00 0.00 0.00 4.94
300 301 0.962356 CCAGCCATCACTTCCACCAC 60.962 60.000 0.00 0.00 0.00 4.16
301 302 1.379916 CCAGCCATCACTTCCACCA 59.620 57.895 0.00 0.00 0.00 4.17
302 303 0.678048 GACCAGCCATCACTTCCACC 60.678 60.000 0.00 0.00 0.00 4.61
303 304 0.678048 GGACCAGCCATCACTTCCAC 60.678 60.000 0.00 0.00 36.34 4.02
304 305 1.133181 TGGACCAGCCATCACTTCCA 61.133 55.000 0.00 0.00 43.33 3.53
305 306 1.685224 TGGACCAGCCATCACTTCC 59.315 57.895 0.00 0.00 43.33 3.46
313 314 1.541118 TTGATCCCTGGACCAGCCA 60.541 57.895 16.72 7.85 46.96 4.75
314 315 1.225704 CTTGATCCCTGGACCAGCC 59.774 63.158 16.72 5.35 37.10 4.85
315 316 1.452833 GCTTGATCCCTGGACCAGC 60.453 63.158 16.72 2.85 0.00 4.85
316 317 0.107312 CTGCTTGATCCCTGGACCAG 60.107 60.000 15.15 15.15 0.00 4.00
317 318 0.547471 TCTGCTTGATCCCTGGACCA 60.547 55.000 0.00 0.00 0.00 4.02
318 319 0.842635 ATCTGCTTGATCCCTGGACC 59.157 55.000 0.00 0.00 0.00 4.46
319 320 2.252976 GATCTGCTTGATCCCTGGAC 57.747 55.000 0.00 0.00 44.34 4.02
327 328 3.881089 TGCATCGATTTGATCTGCTTGAT 59.119 39.130 0.00 0.00 34.13 2.57
328 329 3.272581 TGCATCGATTTGATCTGCTTGA 58.727 40.909 0.00 0.00 34.13 3.02
329 330 3.685836 TGCATCGATTTGATCTGCTTG 57.314 42.857 0.00 0.00 34.13 4.01
330 331 4.707030 TTTGCATCGATTTGATCTGCTT 57.293 36.364 0.00 0.00 34.13 3.91
331 332 4.337274 TCATTTGCATCGATTTGATCTGCT 59.663 37.500 0.00 0.00 34.13 4.24
332 333 4.603985 TCATTTGCATCGATTTGATCTGC 58.396 39.130 0.00 0.00 34.13 4.26
333 334 5.170803 CGTTCATTTGCATCGATTTGATCTG 59.829 40.000 0.00 0.00 34.13 2.90
334 335 5.268544 CGTTCATTTGCATCGATTTGATCT 58.731 37.500 0.00 0.00 34.13 2.75
335 336 4.438797 CCGTTCATTTGCATCGATTTGATC 59.561 41.667 0.00 0.00 34.13 2.92
336 337 4.353737 CCGTTCATTTGCATCGATTTGAT 58.646 39.130 0.00 0.00 38.01 2.57
337 338 3.757184 CCGTTCATTTGCATCGATTTGA 58.243 40.909 0.00 0.00 0.00 2.69
338 339 2.279659 GCCGTTCATTTGCATCGATTTG 59.720 45.455 0.00 0.00 0.00 2.32
339 340 2.164219 AGCCGTTCATTTGCATCGATTT 59.836 40.909 0.00 0.00 0.00 2.17
340 341 1.745087 AGCCGTTCATTTGCATCGATT 59.255 42.857 0.00 0.00 0.00 3.34
341 342 1.382522 AGCCGTTCATTTGCATCGAT 58.617 45.000 0.00 0.00 0.00 3.59
342 343 1.933181 CTAGCCGTTCATTTGCATCGA 59.067 47.619 0.00 0.00 0.00 3.59
343 344 1.595489 GCTAGCCGTTCATTTGCATCG 60.595 52.381 2.29 0.00 0.00 3.84
344 345 1.268743 GGCTAGCCGTTCATTTGCATC 60.269 52.381 20.16 0.00 0.00 3.91
345 346 0.740737 GGCTAGCCGTTCATTTGCAT 59.259 50.000 20.16 0.00 0.00 3.96
346 347 0.607762 TGGCTAGCCGTTCATTTGCA 60.608 50.000 28.28 4.00 39.42 4.08
347 348 0.099436 CTGGCTAGCCGTTCATTTGC 59.901 55.000 28.28 1.18 39.42 3.68
348 349 0.734889 CCTGGCTAGCCGTTCATTTG 59.265 55.000 28.28 10.31 39.42 2.32
349 350 1.032114 GCCTGGCTAGCCGTTCATTT 61.032 55.000 28.28 0.00 39.42 2.32
350 351 1.452108 GCCTGGCTAGCCGTTCATT 60.452 57.895 28.28 0.00 39.42 2.57
351 352 2.190578 GCCTGGCTAGCCGTTCAT 59.809 61.111 28.28 0.00 39.42 2.57
352 353 4.451150 CGCCTGGCTAGCCGTTCA 62.451 66.667 28.28 10.36 39.42 3.18
363 364 1.709147 CGAAAAGATCAGCCGCCTGG 61.709 60.000 0.00 0.00 39.61 4.45
364 365 1.021390 ACGAAAAGATCAGCCGCCTG 61.021 55.000 0.00 0.00 40.54 4.85
365 366 0.535335 TACGAAAAGATCAGCCGCCT 59.465 50.000 0.00 0.00 0.00 5.52
366 367 1.327764 CTTACGAAAAGATCAGCCGCC 59.672 52.381 0.00 0.00 0.00 6.13
367 368 2.268298 TCTTACGAAAAGATCAGCCGC 58.732 47.619 0.00 0.00 0.00 6.53
374 375 3.458189 CCGGCTGATCTTACGAAAAGAT 58.542 45.455 14.69 14.69 39.53 2.40
375 376 2.888594 CCGGCTGATCTTACGAAAAGA 58.111 47.619 0.00 7.29 0.00 2.52
376 377 1.327764 GCCGGCTGATCTTACGAAAAG 59.672 52.381 22.15 0.00 0.00 2.27
377 378 1.066430 AGCCGGCTGATCTTACGAAAA 60.066 47.619 32.33 0.00 0.00 2.29
378 379 0.535335 AGCCGGCTGATCTTACGAAA 59.465 50.000 32.33 0.00 0.00 3.46
379 380 0.535335 AAGCCGGCTGATCTTACGAA 59.465 50.000 33.60 0.00 0.00 3.85
380 381 1.066605 GTAAGCCGGCTGATCTTACGA 59.933 52.381 33.60 3.89 34.77 3.43
381 382 1.488527 GTAAGCCGGCTGATCTTACG 58.511 55.000 33.60 0.00 34.77 3.18
382 383 1.488527 CGTAAGCCGGCTGATCTTAC 58.511 55.000 33.60 25.69 38.97 2.34
383 384 3.959478 CGTAAGCCGGCTGATCTTA 57.041 52.632 33.60 16.02 0.00 2.10
384 385 4.835927 CGTAAGCCGGCTGATCTT 57.164 55.556 33.60 17.27 0.00 2.40
402 403 2.358003 GCTATGGCCGCTGCTAGG 60.358 66.667 0.00 0.00 37.74 3.02
403 404 0.815213 TTTGCTATGGCCGCTGCTAG 60.815 55.000 13.45 0.00 37.74 3.42
404 405 0.393673 TTTTGCTATGGCCGCTGCTA 60.394 50.000 13.45 0.00 37.74 3.49
405 406 1.678635 TTTTGCTATGGCCGCTGCT 60.679 52.632 13.45 0.00 37.74 4.24
406 407 1.517039 GTTTTGCTATGGCCGCTGC 60.517 57.895 0.00 2.02 37.74 5.25
407 408 1.139520 GGTTTTGCTATGGCCGCTG 59.860 57.895 0.00 0.00 37.74 5.18
408 409 2.052104 GGGTTTTGCTATGGCCGCT 61.052 57.895 0.00 0.00 37.74 5.52
409 410 1.675720 ATGGGTTTTGCTATGGCCGC 61.676 55.000 0.00 0.00 37.74 6.53
410 411 0.385390 GATGGGTTTTGCTATGGCCG 59.615 55.000 0.00 0.00 37.74 6.13
411 412 1.136891 GTGATGGGTTTTGCTATGGCC 59.863 52.381 0.00 0.00 37.74 5.36
412 413 1.824230 TGTGATGGGTTTTGCTATGGC 59.176 47.619 0.00 0.00 39.26 4.40
413 414 2.824936 TGTGTGATGGGTTTTGCTATGG 59.175 45.455 0.00 0.00 0.00 2.74
414 415 4.724074 ATGTGTGATGGGTTTTGCTATG 57.276 40.909 0.00 0.00 0.00 2.23
415 416 5.481105 CAAATGTGTGATGGGTTTTGCTAT 58.519 37.500 0.00 0.00 0.00 2.97
416 417 4.798924 GCAAATGTGTGATGGGTTTTGCTA 60.799 41.667 10.08 0.00 43.28 3.49
417 418 3.731089 CAAATGTGTGATGGGTTTTGCT 58.269 40.909 0.00 0.00 0.00 3.91
418 419 2.223845 GCAAATGTGTGATGGGTTTTGC 59.776 45.455 0.00 0.00 41.19 3.68
419 420 3.248125 GTGCAAATGTGTGATGGGTTTTG 59.752 43.478 0.00 0.00 0.00 2.44
420 421 3.465871 GTGCAAATGTGTGATGGGTTTT 58.534 40.909 0.00 0.00 0.00 2.43
421 422 2.224257 GGTGCAAATGTGTGATGGGTTT 60.224 45.455 0.00 0.00 0.00 3.27
422 423 1.344114 GGTGCAAATGTGTGATGGGTT 59.656 47.619 0.00 0.00 0.00 4.11
423 424 0.968405 GGTGCAAATGTGTGATGGGT 59.032 50.000 0.00 0.00 0.00 4.51
424 425 0.967662 TGGTGCAAATGTGTGATGGG 59.032 50.000 0.00 0.00 0.00 4.00
425 426 1.337074 GGTGGTGCAAATGTGTGATGG 60.337 52.381 0.00 0.00 0.00 3.51
426 427 1.340568 TGGTGGTGCAAATGTGTGATG 59.659 47.619 0.00 0.00 0.00 3.07
427 428 1.340889 GTGGTGGTGCAAATGTGTGAT 59.659 47.619 0.00 0.00 0.00 3.06
428 429 0.743688 GTGGTGGTGCAAATGTGTGA 59.256 50.000 0.00 0.00 0.00 3.58
429 430 0.459078 TGTGGTGGTGCAAATGTGTG 59.541 50.000 0.00 0.00 0.00 3.82
430 431 1.068895 CATGTGGTGGTGCAAATGTGT 59.931 47.619 0.00 0.00 0.00 3.72
431 432 1.340568 TCATGTGGTGGTGCAAATGTG 59.659 47.619 0.00 0.00 0.00 3.21
432 433 1.702182 TCATGTGGTGGTGCAAATGT 58.298 45.000 0.00 0.00 0.00 2.71
433 434 4.364860 CATATCATGTGGTGGTGCAAATG 58.635 43.478 0.00 0.00 0.00 2.32
434 435 3.385433 CCATATCATGTGGTGGTGCAAAT 59.615 43.478 0.00 0.00 31.96 2.32
435 436 2.759535 CCATATCATGTGGTGGTGCAAA 59.240 45.455 0.00 0.00 31.96 3.68
436 437 2.377073 CCATATCATGTGGTGGTGCAA 58.623 47.619 0.00 0.00 31.96 4.08
437 438 2.055684 CCATATCATGTGGTGGTGCA 57.944 50.000 0.00 0.00 31.96 4.57
444 445 5.163311 TGGTCTTCAGTACCATATCATGTGG 60.163 44.000 0.00 0.00 42.10 4.17
445 446 5.917462 TGGTCTTCAGTACCATATCATGTG 58.083 41.667 0.00 0.00 42.10 3.21
446 447 6.560003 TTGGTCTTCAGTACCATATCATGT 57.440 37.500 0.00 0.00 46.16 3.21
447 448 5.468072 GCTTGGTCTTCAGTACCATATCATG 59.532 44.000 0.00 0.00 46.16 3.07
448 449 5.615289 GCTTGGTCTTCAGTACCATATCAT 58.385 41.667 0.00 0.00 46.16 2.45
449 450 4.441495 CGCTTGGTCTTCAGTACCATATCA 60.441 45.833 0.00 0.00 46.16 2.15
450 451 4.051922 CGCTTGGTCTTCAGTACCATATC 58.948 47.826 0.00 0.00 46.16 1.63
451 452 3.181465 CCGCTTGGTCTTCAGTACCATAT 60.181 47.826 0.00 0.00 46.16 1.78
452 453 2.167693 CCGCTTGGTCTTCAGTACCATA 59.832 50.000 0.00 0.00 46.16 2.74
453 454 1.066143 CCGCTTGGTCTTCAGTACCAT 60.066 52.381 0.00 0.00 46.16 3.55
454 455 0.320374 CCGCTTGGTCTTCAGTACCA 59.680 55.000 0.00 0.00 45.26 3.25
455 456 1.019805 GCCGCTTGGTCTTCAGTACC 61.020 60.000 0.00 0.00 37.53 3.34
456 457 1.019805 GGCCGCTTGGTCTTCAGTAC 61.020 60.000 0.00 0.00 33.30 2.73
457 458 1.295423 GGCCGCTTGGTCTTCAGTA 59.705 57.895 0.00 0.00 33.30 2.74
458 459 2.032681 GGCCGCTTGGTCTTCAGT 59.967 61.111 0.00 0.00 33.30 3.41
516 517 6.703319 TCATGGTTATCTCCGTTTTTCAGTA 58.297 36.000 0.00 0.00 0.00 2.74
527 528 5.215252 TCGGATCTTTCATGGTTATCTCC 57.785 43.478 0.00 0.00 0.00 3.71
528 529 5.872070 GGATCGGATCTTTCATGGTTATCTC 59.128 44.000 16.96 0.00 0.00 2.75
559 560 5.604650 AGGACTTGGATCTACCCTAGAAATG 59.395 44.000 0.00 0.00 38.50 2.32
571 572 5.014858 TCGTGTTACTTAGGACTTGGATCT 58.985 41.667 0.00 0.00 0.00 2.75
678 679 2.632996 CGTCATTAGGCTGGGGATAAGA 59.367 50.000 0.00 0.00 0.00 2.10
686 687 2.173669 CACGGCGTCATTAGGCTGG 61.174 63.158 10.85 0.00 45.24 4.85
857 860 1.003118 TGAAAATCCCACGTCCCTCTG 59.997 52.381 0.00 0.00 0.00 3.35
910 913 1.661341 GAGTGGCTAACATGGAGCTG 58.339 55.000 18.16 0.00 39.98 4.24
996 999 2.032860 CTAGACCTCCCACCATGGCG 62.033 65.000 13.04 0.90 35.79 5.69
1159 1177 2.507324 GTCGAGGCCGAGCTTGAC 60.507 66.667 1.22 0.00 46.52 3.18
1798 1822 3.282557 TGAACGTGTTCAGCGTCAT 57.717 47.368 11.21 0.00 43.90 3.06
2766 2790 4.430765 CGGTTCCGGTCCCTGACG 62.431 72.222 0.00 0.00 32.65 4.35
2867 2891 5.946486 TGCCCATATTTACACCATCACATA 58.054 37.500 0.00 0.00 0.00 2.29
2871 2895 4.644234 CAGTTGCCCATATTTACACCATCA 59.356 41.667 0.00 0.00 0.00 3.07
2958 2983 6.360370 TCTACACCATATAATCCTGGCTTC 57.640 41.667 0.00 0.00 35.88 3.86
2966 2991 6.312426 GCTGCACTGATCTACACCATATAATC 59.688 42.308 0.00 0.00 0.00 1.75
2985 3010 1.002900 ACATTACACACGTTGCTGCAC 60.003 47.619 0.00 0.00 0.00 4.57
2989 3014 4.612712 GCACATTACATTACACACGTTGCT 60.613 41.667 0.00 0.00 0.00 3.91
3028 3054 6.690098 CGAGGAATAGCAATTGACATGAAAAG 59.310 38.462 10.34 0.00 0.00 2.27
3082 3115 6.857964 GTGAAATCGACTGACATGAAAACATT 59.142 34.615 0.00 0.00 0.00 2.71
3083 3116 6.373779 GTGAAATCGACTGACATGAAAACAT 58.626 36.000 0.00 0.00 0.00 2.71
3085 3118 5.147162 GGTGAAATCGACTGACATGAAAAC 58.853 41.667 0.00 0.00 0.00 2.43
3112 3148 0.812811 CCAGCCATGTCATGACCTCG 60.813 60.000 22.85 7.37 0.00 4.63
3117 3153 0.691904 TGTGACCAGCCATGTCATGA 59.308 50.000 14.67 0.00 43.98 3.07
3120 3156 0.250424 CACTGTGACCAGCCATGTCA 60.250 55.000 0.32 0.00 42.81 3.58
3135 3171 0.820891 AGCCTCCACTTGCAACACTG 60.821 55.000 0.00 0.00 0.00 3.66
3136 3172 0.820891 CAGCCTCCACTTGCAACACT 60.821 55.000 0.00 0.00 0.00 3.55
3167 3203 1.144057 CATGCCCTGGTACGGAGTC 59.856 63.158 0.00 0.00 43.93 3.36
3169 3205 0.250038 CATCATGCCCTGGTACGGAG 60.250 60.000 0.00 0.00 36.31 4.63
3170 3206 1.695114 CCATCATGCCCTGGTACGGA 61.695 60.000 0.00 0.00 36.31 4.69
3171 3207 1.227943 CCATCATGCCCTGGTACGG 60.228 63.158 0.00 0.00 0.00 4.02
3172 3208 0.532862 GACCATCATGCCCTGGTACG 60.533 60.000 12.61 0.00 45.70 3.67
3182 3218 1.153168 GTCACCCCCGACCATCATG 60.153 63.158 0.00 0.00 0.00 3.07
3234 3271 6.011981 TCAGGTGTATATTGGGTCCTTTTTCT 60.012 38.462 0.00 0.00 0.00 2.52
3241 3278 4.706842 ACATCAGGTGTATATTGGGTCC 57.293 45.455 0.00 0.00 39.91 4.46
3252 3289 0.321671 CCAGACGGAACATCAGGTGT 59.678 55.000 0.00 0.00 44.84 4.16
3254 3291 1.276421 CTTCCAGACGGAACATCAGGT 59.724 52.381 0.00 0.00 46.79 4.00
3264 3301 0.395862 TCTAGGAGCCTTCCAGACGG 60.396 60.000 0.00 0.00 46.64 4.79
3270 3307 1.001158 CGTTCGATCTAGGAGCCTTCC 60.001 57.143 0.00 0.00 44.39 3.46
3274 3311 2.544069 CCTTTCGTTCGATCTAGGAGCC 60.544 54.545 10.72 0.00 0.00 4.70
3280 3317 2.997986 GGCAAACCTTTCGTTCGATCTA 59.002 45.455 0.00 0.00 31.78 1.98
3288 3325 0.250553 TCCATCGGCAAACCTTTCGT 60.251 50.000 0.00 0.00 0.00 3.85
3290 3327 0.811281 CCTCCATCGGCAAACCTTTC 59.189 55.000 0.00 0.00 0.00 2.62
3298 3335 0.033920 CGATCATTCCTCCATCGGCA 59.966 55.000 0.00 0.00 36.58 5.69
3300 3337 2.733542 CGATCGATCATTCCTCCATCGG 60.734 54.545 24.40 0.25 39.90 4.18
3302 3339 3.857549 TCGATCGATCATTCCTCCATC 57.142 47.619 24.40 0.00 0.00 3.51
3304 3341 2.287608 CGTTCGATCGATCATTCCTCCA 60.288 50.000 24.40 0.00 0.00 3.86
3350 3387 8.138712 TGTAATTCGTATTTTCTGTGCCTTTTT 58.861 29.630 0.00 0.00 0.00 1.94
3366 3439 5.398169 CAAGCTTGGCATTTGTAATTCGTA 58.602 37.500 19.14 0.00 0.00 3.43
3368 3441 3.613737 CCAAGCTTGGCATTTGTAATTCG 59.386 43.478 31.70 3.90 42.21 3.34
3419 3495 9.045223 GTTGCCTTGATTTTTCATAGTCTTTTT 57.955 29.630 0.00 0.00 0.00 1.94
3424 3500 5.410924 GGGTTGCCTTGATTTTTCATAGTC 58.589 41.667 0.00 0.00 0.00 2.59
3445 3521 4.193090 TGCCATGTAAACTTGTATACGGG 58.807 43.478 0.00 0.00 0.00 5.28
3446 3522 5.804692 TTGCCATGTAAACTTGTATACGG 57.195 39.130 0.00 0.00 0.00 4.02
3471 3547 3.998913 TCTGTTGCCATGATAGTTGGA 57.001 42.857 0.00 0.00 36.26 3.53
3481 3557 4.202284 GCCATGGAAATTATCTGTTGCCAT 60.202 41.667 18.40 0.00 35.18 4.40
3509 3589 7.490840 TCATACAATTTGCAATCCAACATAGG 58.509 34.615 0.00 0.00 31.97 2.57
3579 3662 9.659135 TGGAGATTTTATTAATTGGATCATGGT 57.341 29.630 0.00 0.00 0.00 3.55
3629 3712 1.268352 GCGTGGCATGTTTTTAGACCA 59.732 47.619 8.75 0.00 0.00 4.02
3640 3727 6.459257 TTTTAATTTTTGTAGCGTGGCATG 57.541 33.333 1.31 1.31 0.00 4.06
3641 3728 7.517321 CAATTTTAATTTTTGTAGCGTGGCAT 58.483 30.769 0.00 0.00 0.00 4.40
3647 3734 7.517321 ACATGGCAATTTTAATTTTTGTAGCG 58.483 30.769 0.00 0.00 0.00 4.26
3654 3741 7.830099 TTGGGAACATGGCAATTTTAATTTT 57.170 28.000 0.00 0.00 42.32 1.82
3672 3759 5.723887 ACCATGGCAAACTTATTATTGGGAA 59.276 36.000 13.04 0.00 0.00 3.97
3733 3821 6.438741 TGGCAATTTTAGTGACCATGGAAATA 59.561 34.615 21.47 7.01 0.00 1.40
3737 3825 3.772387 TGGCAATTTTAGTGACCATGGA 58.228 40.909 21.47 0.00 0.00 3.41
3740 3828 4.095946 ACCATGGCAATTTTAGTGACCAT 58.904 39.130 13.04 0.00 34.96 3.55
3745 3833 6.531240 GTGTATGAACCATGGCAATTTTAGTG 59.469 38.462 13.04 0.00 0.00 2.74
3746 3834 6.437162 AGTGTATGAACCATGGCAATTTTAGT 59.563 34.615 13.04 0.00 0.00 2.24
3747 3835 6.866480 AGTGTATGAACCATGGCAATTTTAG 58.134 36.000 13.04 0.00 0.00 1.85
3748 3836 6.849085 AGTGTATGAACCATGGCAATTTTA 57.151 33.333 13.04 0.00 0.00 1.52
3749 3837 5.743636 AGTGTATGAACCATGGCAATTTT 57.256 34.783 13.04 0.00 0.00 1.82
3750 3838 6.849085 TTAGTGTATGAACCATGGCAATTT 57.151 33.333 13.04 0.00 0.00 1.82
3751 3839 7.422465 AATTAGTGTATGAACCATGGCAATT 57.578 32.000 13.04 0.00 0.00 2.32
3752 3840 7.422465 AAATTAGTGTATGAACCATGGCAAT 57.578 32.000 13.04 5.62 0.00 3.56
3753 3841 6.849085 AAATTAGTGTATGAACCATGGCAA 57.151 33.333 13.04 0.00 0.00 4.52
3754 3842 6.629128 CAAAATTAGTGTATGAACCATGGCA 58.371 36.000 13.04 2.49 0.00 4.92
3755 3843 5.519927 GCAAAATTAGTGTATGAACCATGGC 59.480 40.000 13.04 0.00 0.00 4.40
3756 3844 6.042143 GGCAAAATTAGTGTATGAACCATGG 58.958 40.000 11.19 11.19 0.00 3.66
3757 3845 6.629128 TGGCAAAATTAGTGTATGAACCATG 58.371 36.000 0.00 0.00 0.00 3.66
3758 3846 6.849085 TGGCAAAATTAGTGTATGAACCAT 57.151 33.333 0.00 0.00 0.00 3.55
3759 3847 6.435591 TCATGGCAAAATTAGTGTATGAACCA 59.564 34.615 0.00 0.00 0.00 3.67
3760 3848 6.862209 TCATGGCAAAATTAGTGTATGAACC 58.138 36.000 0.00 0.00 0.00 3.62
3761 3849 7.043192 GCATCATGGCAAAATTAGTGTATGAAC 60.043 37.037 0.00 6.90 30.81 3.18
3762 3850 6.979817 GCATCATGGCAAAATTAGTGTATGAA 59.020 34.615 0.00 0.00 30.81 2.57
3763 3851 6.096564 TGCATCATGGCAAAATTAGTGTATGA 59.903 34.615 0.00 10.59 41.65 2.15
3764 3852 6.274579 TGCATCATGGCAAAATTAGTGTATG 58.725 36.000 0.00 0.00 41.65 2.39
3765 3853 6.468333 TGCATCATGGCAAAATTAGTGTAT 57.532 33.333 0.00 0.00 41.65 2.29
3766 3854 5.911378 TGCATCATGGCAAAATTAGTGTA 57.089 34.783 0.00 0.00 41.65 2.90
3767 3855 4.804868 TGCATCATGGCAAAATTAGTGT 57.195 36.364 0.00 0.00 41.65 3.55
3799 3887 7.115414 ACTTTTGTTTTGGGATCATGGAAAAA 58.885 30.769 0.00 0.00 0.00 1.94
3800 3888 6.657875 ACTTTTGTTTTGGGATCATGGAAAA 58.342 32.000 0.00 0.00 0.00 2.29
3801 3889 6.245890 ACTTTTGTTTTGGGATCATGGAAA 57.754 33.333 0.00 0.00 0.00 3.13
3802 3890 5.885449 ACTTTTGTTTTGGGATCATGGAA 57.115 34.783 0.00 0.00 0.00 3.53
3803 3891 5.365025 TCAACTTTTGTTTTGGGATCATGGA 59.635 36.000 0.00 0.00 41.35 3.41
3804 3892 5.466393 GTCAACTTTTGTTTTGGGATCATGG 59.534 40.000 0.00 0.00 41.35 3.66
3805 3893 6.047870 TGTCAACTTTTGTTTTGGGATCATG 58.952 36.000 0.00 0.00 41.35 3.07
3806 3894 6.232581 TGTCAACTTTTGTTTTGGGATCAT 57.767 33.333 0.00 0.00 41.35 2.45
3807 3895 5.667539 TGTCAACTTTTGTTTTGGGATCA 57.332 34.783 0.00 0.00 41.35 2.92
3808 3896 6.279882 TCATGTCAACTTTTGTTTTGGGATC 58.720 36.000 0.00 0.00 41.35 3.36
3809 3897 6.232581 TCATGTCAACTTTTGTTTTGGGAT 57.767 33.333 0.00 0.00 41.35 3.85
3810 3898 5.667539 TCATGTCAACTTTTGTTTTGGGA 57.332 34.783 0.00 0.00 41.35 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.