Multiple sequence alignment - TraesCS6D01G247700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G247700 chr6D 100.000 6644 0 0 1 6644 351118276 351111633 0.000000e+00 12270.0
1 TraesCS6D01G247700 chr6D 90.441 136 9 1 6478 6613 363384342 363384211 6.850000e-40 176.0
2 TraesCS6D01G247700 chr6D 98.851 87 1 0 3565 3651 351114625 351114539 8.920000e-34 156.0
3 TraesCS6D01G247700 chr6D 98.851 87 1 0 3652 3738 351114712 351114626 8.920000e-34 156.0
4 TraesCS6D01G247700 chr6D 92.929 99 7 0 6270 6368 32920262 32920164 1.930000e-30 145.0
5 TraesCS6D01G247700 chr6D 90.826 109 8 1 6271 6379 389141712 389141606 1.930000e-30 145.0
6 TraesCS6D01G247700 chr6D 100.000 77 0 0 6404 6480 351111797 351111721 6.950000e-30 143.0
7 TraesCS6D01G247700 chr6D 100.000 28 0 0 6223 6250 86854583 86854610 1.200000e-02 52.8
8 TraesCS6D01G247700 chr6A 95.833 2784 59 17 993 3738 492701927 492704691 0.000000e+00 4446.0
9 TraesCS6D01G247700 chr6A 97.567 2589 50 12 3565 6147 492704605 492707186 0.000000e+00 4420.0
10 TraesCS6D01G247700 chr6A 81.481 513 63 17 1 502 492700958 492701449 6.250000e-105 392.0
11 TraesCS6D01G247700 chr6A 94.271 192 10 1 769 959 492701621 492701812 6.520000e-75 292.0
12 TraesCS6D01G247700 chr6A 98.851 87 1 0 3652 3738 492704518 492704604 8.920000e-34 156.0
13 TraesCS6D01G247700 chr6A 97.701 87 2 0 3565 3651 492704692 492704778 4.150000e-32 150.0
14 TraesCS6D01G247700 chr6B 96.776 2140 54 8 3652 5782 528620129 528622262 0.000000e+00 3555.0
15 TraesCS6D01G247700 chr6B 92.971 1821 57 21 1539 3322 528617699 528619485 0.000000e+00 2588.0
16 TraesCS6D01G247700 chr6B 96.945 491 14 1 1033 1522 528617042 528617532 0.000000e+00 822.0
17 TraesCS6D01G247700 chr6B 82.310 684 82 20 1 673 528615783 528616438 2.090000e-154 556.0
18 TraesCS6D01G247700 chr6B 90.511 411 24 9 5780 6188 528622365 528622762 4.560000e-146 529.0
19 TraesCS6D01G247700 chr6B 97.909 287 6 0 3365 3651 528619929 528620215 1.290000e-136 497.0
20 TraesCS6D01G247700 chr6B 95.690 232 4 2 761 991 528616481 528616707 1.050000e-97 368.0
21 TraesCS6D01G247700 chr6B 85.870 92 12 1 6388 6478 15398372 15398281 5.480000e-16 97.1
22 TraesCS6D01G247700 chr6B 85.393 89 12 1 6388 6475 15606661 15606573 2.550000e-14 91.6
23 TraesCS6D01G247700 chr6B 100.000 33 0 0 1521 1553 528617546 528617578 2.000000e-05 62.1
24 TraesCS6D01G247700 chr2A 89.552 134 13 1 6480 6613 418618384 418618252 1.150000e-37 169.0
25 TraesCS6D01G247700 chr2A 93.000 100 7 0 6270 6369 27741257 27741356 5.370000e-31 147.0
26 TraesCS6D01G247700 chr2A 81.967 122 19 2 6381 6500 65998601 65998721 4.240000e-17 100.0
27 TraesCS6D01G247700 chr4A 88.235 136 15 1 6480 6615 544034831 544034697 1.920000e-35 161.0
28 TraesCS6D01G247700 chr4A 84.946 93 14 0 6388 6480 61742450 61742542 1.970000e-15 95.3
29 TraesCS6D01G247700 chr2D 91.525 118 9 1 6497 6613 118366606 118366723 1.920000e-35 161.0
30 TraesCS6D01G247700 chr2D 84.314 153 16 7 6469 6614 337222721 337222872 6.950000e-30 143.0
31 TraesCS6D01G247700 chr3B 87.413 143 12 2 6480 6621 815372797 815372934 6.900000e-35 159.0
32 TraesCS6D01G247700 chr3B 75.000 224 36 16 6268 6480 74291735 74291949 1.190000e-12 86.1
33 TraesCS6D01G247700 chr5A 95.876 97 4 0 6271 6367 461871461 461871365 2.480000e-34 158.0
34 TraesCS6D01G247700 chr5A 100.000 30 0 0 6221 6250 76742182 76742153 1.000000e-03 56.5
35 TraesCS6D01G247700 chr5A 96.774 31 1 0 6220 6250 598868593 598868623 1.200000e-02 52.8
36 TraesCS6D01G247700 chr4D 91.964 112 8 1 6516 6626 3590571 3590460 8.920000e-34 156.0
37 TraesCS6D01G247700 chr4D 88.800 125 10 3 6254 6376 360102113 360102235 4.150000e-32 150.0
38 TraesCS6D01G247700 chr4D 92.308 104 8 0 6270 6373 386751719 386751616 1.490000e-31 148.0
39 TraesCS6D01G247700 chr4D 85.417 144 17 3 6478 6617 116279895 116279752 5.370000e-31 147.0
40 TraesCS6D01G247700 chr2B 86.331 139 17 2 6480 6617 757065163 757065026 4.150000e-32 150.0
41 TraesCS6D01G247700 chr2B 89.655 116 8 4 6268 6382 453237211 453237323 1.930000e-30 145.0
42 TraesCS6D01G247700 chr2B 82.979 94 13 2 6387 6480 453225988 453226078 1.540000e-11 82.4
43 TraesCS6D01G247700 chr7A 92.157 102 8 0 6267 6368 187113509 187113610 1.930000e-30 145.0
44 TraesCS6D01G247700 chr7B 91.429 105 8 1 6271 6375 638511040 638511143 6.950000e-30 143.0
45 TraesCS6D01G247700 chr7B 96.774 31 1 0 6223 6253 203213380 203213350 1.200000e-02 52.8
46 TraesCS6D01G247700 chr5D 85.393 89 9 3 6390 6478 563601039 563600955 9.180000e-14 89.8
47 TraesCS6D01G247700 chr5D 100.000 29 0 0 6223 6251 6109667 6109695 3.000000e-03 54.7
48 TraesCS6D01G247700 chr5D 96.774 31 1 0 6220 6250 384472910 384472940 1.200000e-02 52.8
49 TraesCS6D01G247700 chr1B 82.796 93 14 2 6387 6478 649043652 649043743 1.540000e-11 82.4
50 TraesCS6D01G247700 chr7D 97.143 35 1 0 6216 6250 568014363 568014397 7.200000e-05 60.2
51 TraesCS6D01G247700 chr3A 100.000 30 0 0 6221 6250 686178772 686178801 1.000000e-03 56.5
52 TraesCS6D01G247700 chr1D 100.000 28 0 0 6223 6250 159982822 159982795 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G247700 chr6D 351111633 351118276 6643 True 12270.000000 12270 100.000 1 6644 1 chr6D.!!$R2 6643
1 TraesCS6D01G247700 chr6A 492700958 492707186 6228 False 1642.666667 4446 94.284 1 6147 6 chr6A.!!$F1 6146
2 TraesCS6D01G247700 chr6B 528615783 528622762 6979 False 1122.137500 3555 94.139 1 6188 8 chr6B.!!$F1 6187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.178987 ACTAGAGGGCACGATCGGAT 60.179 55.000 20.98 0.00 0.00 4.18 F
438 450 0.250684 TGGCAATGATGTCGTGTGGT 60.251 50.000 0.00 0.00 32.34 4.16 F
755 767 0.460109 TCAGCAACGGATGGATGACG 60.460 55.000 0.00 0.00 0.00 4.35 F
1378 1706 1.021202 TGCTTTGGTTCTGACGTTGG 58.979 50.000 0.00 0.00 0.00 3.77 F
2924 3414 0.750850 GCTCATTTCCCATGCATGCT 59.249 50.000 21.69 1.07 0.00 3.79 F
3095 3611 1.130561 GAGCCAGTAATTTGGACACGC 59.869 52.381 0.04 0.00 40.87 5.34 F
4369 5381 1.413077 CGAGGGAAGTATCCTTGGTCC 59.587 57.143 0.00 0.00 45.77 4.46 F
4993 6011 1.004745 AGAAGGGGTAGCAATGTGGTG 59.995 52.381 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 1693 0.238289 CATGTGCCAACGTCAGAACC 59.762 55.000 0.00 0.00 0.00 3.62 R
1872 2358 1.520787 CCATGCGAACTACCGGGAC 60.521 63.158 6.32 0.00 0.00 4.46 R
2001 2488 4.096231 TGGGCATGATCTGAAACATTTACG 59.904 41.667 0.00 0.00 0.00 3.18 R
3095 3611 0.465705 TGCTATCTCTTTGGCTCCCG 59.534 55.000 0.00 0.00 0.00 5.14 R
4573 5585 1.070445 CTTGCTGCCATTGTTTTCCCA 59.930 47.619 0.00 0.00 0.00 4.37 R
4757 5775 8.641498 AGTCAAATAACTGATGAATCTTGGTT 57.359 30.769 0.00 0.00 0.00 3.67 R
5310 6328 1.306482 CTCTTCCTCCCCAGGCAGA 60.306 63.158 0.00 0.00 39.56 4.26 R
6038 7165 1.478105 GATGCAAAAGCCGGGATCTTT 59.522 47.619 2.18 0.97 35.47 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.902508 CAAGTTCTCCACTAGAGGGCA 59.097 52.381 6.35 0.00 43.44 5.36
42 43 0.178987 ACTAGAGGGCACGATCGGAT 60.179 55.000 20.98 0.00 0.00 4.18
88 89 4.193334 CGTGAGGCGCGGATCAGA 62.193 66.667 8.83 0.00 33.47 3.27
89 90 2.419198 GTGAGGCGCGGATCAGAT 59.581 61.111 8.83 0.00 0.00 2.90
90 91 1.953138 GTGAGGCGCGGATCAGATG 60.953 63.158 8.83 0.00 0.00 2.90
91 92 2.356793 GAGGCGCGGATCAGATGG 60.357 66.667 8.83 0.00 0.00 3.51
92 93 3.157217 GAGGCGCGGATCAGATGGT 62.157 63.158 8.83 0.00 0.00 3.55
93 94 2.969238 GGCGCGGATCAGATGGTG 60.969 66.667 8.83 0.00 0.00 4.17
94 95 3.643978 GCGCGGATCAGATGGTGC 61.644 66.667 8.83 0.00 0.00 5.01
95 96 3.333189 CGCGGATCAGATGGTGCG 61.333 66.667 2.33 2.33 39.57 5.34
129 130 0.815615 CTAGGAGGCGGGCAATTCAC 60.816 60.000 3.78 0.00 0.00 3.18
134 135 2.785425 GGCGGGCAATTCACCATCC 61.785 63.158 0.00 0.00 0.00 3.51
209 210 7.041098 CCAACTTTACATATCTTCATGGCCTAC 60.041 40.741 3.32 0.00 0.00 3.18
210 211 7.380423 ACTTTACATATCTTCATGGCCTACT 57.620 36.000 3.32 0.00 0.00 2.57
217 218 4.919774 TCTTCATGGCCTACTAAACCAA 57.080 40.909 3.32 0.00 36.94 3.67
222 223 2.866351 TGGCCTACTAAACCAACCAAC 58.134 47.619 3.32 0.00 0.00 3.77
237 238 0.386731 CCAACGAAATGGTGAACCGC 60.387 55.000 0.00 0.00 39.43 5.68
249 250 2.819550 AACCGCTGGTTCGACTGT 59.180 55.556 7.08 0.00 43.05 3.55
260 261 3.759618 TGGTTCGACTGTTTGAAAACCTT 59.240 39.130 3.59 0.00 37.60 3.50
262 263 5.415077 TGGTTCGACTGTTTGAAAACCTTAA 59.585 36.000 3.59 0.00 37.60 1.85
277 278 2.105134 ACCTTAACCGACAACATCACCA 59.895 45.455 0.00 0.00 0.00 4.17
278 279 2.742053 CCTTAACCGACAACATCACCAG 59.258 50.000 0.00 0.00 0.00 4.00
282 283 0.790207 CCGACAACATCACCAGTTCG 59.210 55.000 0.00 0.00 0.00 3.95
354 366 0.460109 CATGACGACCAAGATGGCGA 60.460 55.000 16.23 0.67 42.67 5.54
370 382 2.780094 CGAGCCAGCGTCCTCTGAT 61.780 63.158 0.00 0.00 36.19 2.90
377 389 0.613292 AGCGTCCTCTGATGACCTGT 60.613 55.000 7.38 0.00 0.00 4.00
386 398 2.093288 TCTGATGACCTGTTGCATCCTC 60.093 50.000 0.00 0.00 40.05 3.71
392 404 3.329889 TGTTGCATCCTCGGGCCT 61.330 61.111 0.84 0.00 0.00 5.19
393 405 1.971505 CTGTTGCATCCTCGGGCCTA 61.972 60.000 0.84 0.00 0.00 3.93
394 406 1.223487 GTTGCATCCTCGGGCCTAA 59.777 57.895 0.84 0.00 0.00 2.69
418 430 2.632377 GGCGACCAAGATCATTTCTCA 58.368 47.619 0.00 0.00 31.78 3.27
438 450 0.250684 TGGCAATGATGTCGTGTGGT 60.251 50.000 0.00 0.00 32.34 4.16
442 454 2.935238 GCAATGATGTCGTGTGGTAGGT 60.935 50.000 0.00 0.00 0.00 3.08
499 511 4.567159 GCTATAGAAGTTTCGTGGACCAAG 59.433 45.833 3.21 0.00 0.00 3.61
523 535 2.280389 CGTCCCCATCATCAGCGG 60.280 66.667 0.00 0.00 0.00 5.52
531 543 1.520494 CATCATCAGCGGGATTGGAG 58.480 55.000 0.00 0.00 32.57 3.86
532 544 1.135094 ATCATCAGCGGGATTGGAGT 58.865 50.000 0.00 0.00 32.57 3.85
555 567 1.975680 TCGGGAAGTAGCTTTTGACCT 59.024 47.619 0.00 0.00 0.00 3.85
569 581 0.653636 TGACCTGAACGCGTTTTCAC 59.346 50.000 27.32 13.72 32.02 3.18
598 610 4.755629 GTCCAGGGTCTTCTTTGTTAGTTC 59.244 45.833 0.00 0.00 0.00 3.01
600 612 5.842328 TCCAGGGTCTTCTTTGTTAGTTCTA 59.158 40.000 0.00 0.00 0.00 2.10
622 634 5.087923 AGGGACCCCTTTGTTATTTCTTT 57.912 39.130 7.00 0.00 45.70 2.52
626 638 6.042781 GGGACCCCTTTGTTATTTCTTTTTCT 59.957 38.462 0.00 0.00 0.00 2.52
627 639 7.152645 GGACCCCTTTGTTATTTCTTTTTCTC 58.847 38.462 0.00 0.00 0.00 2.87
649 661 3.428999 CGTAGGGTCCTGTGTGTAAGATG 60.429 52.174 0.00 0.00 0.00 2.90
650 662 2.621070 AGGGTCCTGTGTGTAAGATGT 58.379 47.619 0.00 0.00 0.00 3.06
651 663 3.786553 AGGGTCCTGTGTGTAAGATGTA 58.213 45.455 0.00 0.00 0.00 2.29
652 664 3.769844 AGGGTCCTGTGTGTAAGATGTAG 59.230 47.826 0.00 0.00 0.00 2.74
653 665 3.767673 GGGTCCTGTGTGTAAGATGTAGA 59.232 47.826 0.00 0.00 0.00 2.59
673 685 2.535012 TGTTGTATGCCACGACTTCA 57.465 45.000 7.29 0.00 41.55 3.02
675 687 2.805671 TGTTGTATGCCACGACTTCAAG 59.194 45.455 7.29 0.00 41.55 3.02
676 688 2.806244 GTTGTATGCCACGACTTCAAGT 59.194 45.455 0.00 0.00 38.38 3.16
677 689 3.120321 TGTATGCCACGACTTCAAGTT 57.880 42.857 0.00 0.00 0.00 2.66
678 690 3.472652 TGTATGCCACGACTTCAAGTTT 58.527 40.909 0.00 0.00 0.00 2.66
679 691 3.880490 TGTATGCCACGACTTCAAGTTTT 59.120 39.130 0.00 0.00 0.00 2.43
680 692 4.336993 TGTATGCCACGACTTCAAGTTTTT 59.663 37.500 0.00 0.00 0.00 1.94
681 693 3.414549 TGCCACGACTTCAAGTTTTTC 57.585 42.857 0.00 0.00 0.00 2.29
682 694 2.750166 TGCCACGACTTCAAGTTTTTCA 59.250 40.909 0.00 0.00 0.00 2.69
683 695 3.191581 TGCCACGACTTCAAGTTTTTCAA 59.808 39.130 0.00 0.00 0.00 2.69
684 696 4.142271 TGCCACGACTTCAAGTTTTTCAAT 60.142 37.500 0.00 0.00 0.00 2.57
685 697 5.066634 TGCCACGACTTCAAGTTTTTCAATA 59.933 36.000 0.00 0.00 0.00 1.90
686 698 5.974751 GCCACGACTTCAAGTTTTTCAATAA 59.025 36.000 0.00 0.00 0.00 1.40
687 699 6.474102 GCCACGACTTCAAGTTTTTCAATAAA 59.526 34.615 0.00 0.00 0.00 1.40
688 700 7.009723 GCCACGACTTCAAGTTTTTCAATAAAA 59.990 33.333 0.00 0.00 32.75 1.52
689 701 8.865001 CCACGACTTCAAGTTTTTCAATAAAAA 58.135 29.630 0.00 0.00 41.21 1.94
718 730 5.665916 AAAAAGTAATGAAGCATCTGGGG 57.334 39.130 0.00 0.00 0.00 4.96
719 731 2.355010 AGTAATGAAGCATCTGGGGC 57.645 50.000 0.00 0.00 0.00 5.80
720 732 1.133668 AGTAATGAAGCATCTGGGGCC 60.134 52.381 0.00 0.00 0.00 5.80
721 733 1.133668 GTAATGAAGCATCTGGGGCCT 60.134 52.381 0.84 0.00 0.00 5.19
749 761 1.503542 GCAACTCAGCAACGGATGG 59.496 57.895 0.00 0.00 0.00 3.51
750 762 0.955428 GCAACTCAGCAACGGATGGA 60.955 55.000 0.00 0.00 0.00 3.41
751 763 1.742761 CAACTCAGCAACGGATGGAT 58.257 50.000 0.00 0.00 0.00 3.41
752 764 1.399440 CAACTCAGCAACGGATGGATG 59.601 52.381 0.00 0.00 0.00 3.51
753 765 0.904649 ACTCAGCAACGGATGGATGA 59.095 50.000 0.00 0.00 0.00 2.92
754 766 1.293924 CTCAGCAACGGATGGATGAC 58.706 55.000 0.00 0.00 0.00 3.06
755 767 0.460109 TCAGCAACGGATGGATGACG 60.460 55.000 0.00 0.00 0.00 4.35
756 768 1.815421 AGCAACGGATGGATGACGC 60.815 57.895 0.00 0.00 0.00 5.19
757 769 2.106074 GCAACGGATGGATGACGCA 61.106 57.895 0.00 0.00 0.00 5.24
758 770 2.009108 CAACGGATGGATGACGCAG 58.991 57.895 0.00 0.00 0.00 5.18
838 871 1.528129 AGCGCCTTCAGGAAGAAAAG 58.472 50.000 2.29 0.82 40.79 2.27
938 972 2.359850 GCACGCATCTCCCACCAA 60.360 61.111 0.00 0.00 0.00 3.67
1365 1693 3.120060 GCCTCAGTTATGTCTGTGCTTTG 60.120 47.826 0.00 0.00 36.85 2.77
1378 1706 1.021202 TGCTTTGGTTCTGACGTTGG 58.979 50.000 0.00 0.00 0.00 3.77
1459 1787 2.439156 GCTGCAAGGAAGGCCGAT 60.439 61.111 0.00 0.00 39.96 4.18
1584 2062 4.766373 TGCAAGAGTTGGCAAATATCTTCA 59.234 37.500 16.37 14.50 37.03 3.02
1587 2065 6.183360 GCAAGAGTTGGCAAATATCTTCAGAT 60.183 38.462 16.37 0.00 38.51 2.90
1590 2068 5.431765 AGTTGGCAAATATCTTCAGATCGT 58.568 37.500 0.00 0.00 36.05 3.73
1615 2093 3.561310 TCAGGCATTTCAATATCACGAGC 59.439 43.478 0.00 0.00 0.00 5.03
1619 2097 4.521943 GCATTTCAATATCACGAGCTGTC 58.478 43.478 0.00 0.00 0.00 3.51
1652 2130 6.755607 GGTGTACATTACTGCTAGTACTTTCC 59.244 42.308 0.00 0.00 38.09 3.13
1666 2144 7.201504 GCTAGTACTTTCCGTTCCATTTTACTC 60.202 40.741 0.00 0.00 0.00 2.59
1675 2153 4.260866 CGTTCCATTTTACTCGTTGGTTGT 60.261 41.667 0.00 0.00 0.00 3.32
1872 2358 8.520835 TGCTATTTATGTACTATTCTCTTGCG 57.479 34.615 0.00 0.00 0.00 4.85
1906 2393 4.693566 TCGCATGGAGTTTTTGGTACTTAG 59.306 41.667 0.00 0.00 0.00 2.18
1917 2404 2.343101 TGGTACTTAGTTGCGATGCAC 58.657 47.619 0.00 0.00 38.71 4.57
1968 2455 4.757149 AGATACCAACTGCTTGACTGAAAC 59.243 41.667 0.00 0.00 0.00 2.78
2001 2488 7.502120 ACTGCATCCTATTTCATTACATGTC 57.498 36.000 0.00 0.00 0.00 3.06
2848 3338 3.674997 TCTTATTCCCTCAAGTGTGCAC 58.325 45.455 10.75 10.75 0.00 4.57
2924 3414 0.750850 GCTCATTTCCCATGCATGCT 59.249 50.000 21.69 1.07 0.00 3.79
2954 3463 4.338879 AGTGCAGCTTCAACTTATCCAAT 58.661 39.130 0.00 0.00 0.00 3.16
2978 3487 7.921041 TGTGATTAAGATATCCCTGAGAAGT 57.079 36.000 0.00 0.00 0.00 3.01
2979 3488 9.607333 ATGTGATTAAGATATCCCTGAGAAGTA 57.393 33.333 0.00 0.00 0.00 2.24
2980 3489 9.083422 TGTGATTAAGATATCCCTGAGAAGTAG 57.917 37.037 0.00 0.00 0.00 2.57
2981 3490 9.084533 GTGATTAAGATATCCCTGAGAAGTAGT 57.915 37.037 0.00 0.00 0.00 2.73
2982 3491 9.661954 TGATTAAGATATCCCTGAGAAGTAGTT 57.338 33.333 0.00 0.00 0.00 2.24
3095 3611 1.130561 GAGCCAGTAATTTGGACACGC 59.869 52.381 0.04 0.00 40.87 5.34
3129 3645 4.392940 AGATAGCAATCCCGGAAGAAATG 58.607 43.478 0.73 0.00 31.98 2.32
3327 3848 3.873952 AGTCTTTTGTTGTCTGAGCACTC 59.126 43.478 0.00 0.00 0.00 3.51
3331 3852 2.029844 GTTGTCTGAGCACTCGGGC 61.030 63.158 4.08 4.08 40.83 6.13
3346 3867 4.101448 GGCCTGCACGGACTGGAT 62.101 66.667 0.00 0.00 38.04 3.41
3722 4731 8.860088 ACTAAGGAATTAATTGCTTGAAACTGT 58.140 29.630 32.97 21.39 45.95 3.55
3864 4873 9.471702 AAAGAAGGAATTACTGTCATTCATGAT 57.528 29.630 14.63 0.59 38.06 2.45
4246 5258 8.780846 ATATTTTTCATTTGTGCATGTGATGT 57.219 26.923 0.00 0.00 0.00 3.06
4348 5360 4.538917 CATCACTGATCAGAGAGTCATCG 58.461 47.826 29.27 8.48 31.84 3.84
4369 5381 1.413077 CGAGGGAAGTATCCTTGGTCC 59.587 57.143 0.00 0.00 45.77 4.46
4757 5775 2.434336 ACCATTAGGATCGCAAGCAGTA 59.566 45.455 0.00 0.00 38.69 2.74
4930 5948 8.609176 GTGATTTTGCAGCATTTGATATTTCAT 58.391 29.630 0.00 0.00 0.00 2.57
4993 6011 1.004745 AGAAGGGGTAGCAATGTGGTG 59.995 52.381 0.00 0.00 0.00 4.17
5107 6125 8.184304 TGTTGGTAATATGTTTTGCCTTTACT 57.816 30.769 0.00 0.00 33.04 2.24
5112 6130 8.520351 GGTAATATGTTTTGCCTTTACTCAACT 58.480 33.333 0.00 0.00 0.00 3.16
5113 6131 9.341899 GTAATATGTTTTGCCTTTACTCAACTG 57.658 33.333 0.00 0.00 0.00 3.16
5310 6328 2.101582 CGATGAGGTTCTCGAATTCCCT 59.898 50.000 0.00 0.00 37.05 4.20
5442 6460 0.466124 AGAAGATAGCGGTGAAGGGC 59.534 55.000 0.00 0.00 0.00 5.19
5843 6968 6.325919 TCGGCATTTTCTGTTCTATTTGTT 57.674 33.333 0.00 0.00 0.00 2.83
5962 7089 5.615925 AACTCGACCAATATTTAGAGCCT 57.384 39.130 6.29 0.00 0.00 4.58
5969 7096 4.141158 ACCAATATTTAGAGCCTCCCCTTG 60.141 45.833 0.00 0.00 0.00 3.61
5991 7118 4.202101 TGCGAAATTAAACATAGGGGCATG 60.202 41.667 0.00 0.00 0.00 4.06
6009 7136 5.170021 GGCATGTTTGTATCAGCAAAATCA 58.830 37.500 0.00 0.00 39.65 2.57
6038 7165 5.515106 TCTCCTTTTTCTTTTGTGAAGGGA 58.485 37.500 0.00 0.00 37.92 4.20
6082 7209 2.863853 CGATGCACACAGCCGATCG 61.864 63.158 8.51 8.51 44.83 3.69
6097 7224 0.755686 GATCGGCAACATCTCCCTCT 59.244 55.000 0.00 0.00 0.00 3.69
6110 7237 8.526147 CAACATCTCCCTCTTTTAAACATCATT 58.474 33.333 0.00 0.00 0.00 2.57
6113 7240 9.618890 CATCTCCCTCTTTTAAACATCATTAGA 57.381 33.333 0.00 0.00 0.00 2.10
6147 7274 2.548057 ACATCGTATTTTATGCAGCGGG 59.452 45.455 0.00 0.00 0.00 6.13
6149 7276 2.634600 TCGTATTTTATGCAGCGGGTT 58.365 42.857 0.00 0.00 0.00 4.11
6150 7277 3.011119 TCGTATTTTATGCAGCGGGTTT 58.989 40.909 0.00 0.00 0.00 3.27
6151 7278 4.190001 TCGTATTTTATGCAGCGGGTTTA 58.810 39.130 0.00 0.00 0.00 2.01
6152 7279 4.271533 TCGTATTTTATGCAGCGGGTTTAG 59.728 41.667 0.00 0.00 0.00 1.85
6159 7286 1.897133 TGCAGCGGGTTTAGTAGAAGA 59.103 47.619 0.00 0.00 0.00 2.87
6170 7297 7.816031 CGGGTTTAGTAGAAGATTTCTGTGTTA 59.184 37.037 1.71 0.00 40.94 2.41
6188 7315 5.411361 TGTGTTACGCAAAGCATATTCTTCT 59.589 36.000 0.00 0.00 0.00 2.85
6189 7316 6.072728 TGTGTTACGCAAAGCATATTCTTCTT 60.073 34.615 0.00 0.00 0.00 2.52
6190 7317 6.249260 GTGTTACGCAAAGCATATTCTTCTTG 59.751 38.462 0.00 0.00 0.00 3.02
6191 7318 4.361451 ACGCAAAGCATATTCTTCTTGG 57.639 40.909 0.00 0.00 0.00 3.61
6192 7319 3.758554 ACGCAAAGCATATTCTTCTTGGT 59.241 39.130 0.00 0.00 0.00 3.67
6193 7320 4.218417 ACGCAAAGCATATTCTTCTTGGTT 59.782 37.500 0.00 0.00 32.86 3.67
6194 7321 4.560035 CGCAAAGCATATTCTTCTTGGTTG 59.440 41.667 0.00 0.00 31.96 3.77
6195 7322 4.866486 GCAAAGCATATTCTTCTTGGTTGG 59.134 41.667 0.00 0.00 31.96 3.77
6196 7323 5.413499 CAAAGCATATTCTTCTTGGTTGGG 58.587 41.667 0.00 0.00 31.96 4.12
6197 7324 4.322057 AGCATATTCTTCTTGGTTGGGT 57.678 40.909 0.00 0.00 0.00 4.51
6198 7325 5.450818 AGCATATTCTTCTTGGTTGGGTA 57.549 39.130 0.00 0.00 0.00 3.69
6199 7326 6.018433 AGCATATTCTTCTTGGTTGGGTAT 57.982 37.500 0.00 0.00 0.00 2.73
6200 7327 7.149202 AGCATATTCTTCTTGGTTGGGTATA 57.851 36.000 0.00 0.00 0.00 1.47
6201 7328 7.582719 AGCATATTCTTCTTGGTTGGGTATAA 58.417 34.615 0.00 0.00 0.00 0.98
6202 7329 7.721399 AGCATATTCTTCTTGGTTGGGTATAAG 59.279 37.037 0.00 0.00 0.00 1.73
6203 7330 7.719633 GCATATTCTTCTTGGTTGGGTATAAGA 59.280 37.037 0.00 0.00 0.00 2.10
6204 7331 9.627123 CATATTCTTCTTGGTTGGGTATAAGAA 57.373 33.333 0.00 0.00 36.96 2.52
6207 7334 7.938140 TCTTCTTGGTTGGGTATAAGAAATG 57.062 36.000 0.00 0.00 38.32 2.32
6208 7335 7.695055 TCTTCTTGGTTGGGTATAAGAAATGA 58.305 34.615 0.00 0.00 38.32 2.57
6209 7336 8.336235 TCTTCTTGGTTGGGTATAAGAAATGAT 58.664 33.333 0.00 0.00 38.32 2.45
6210 7337 9.627123 CTTCTTGGTTGGGTATAAGAAATGATA 57.373 33.333 0.00 0.00 38.32 2.15
6211 7338 8.974060 TCTTGGTTGGGTATAAGAAATGATAC 57.026 34.615 0.00 0.00 0.00 2.24
6212 7339 8.778059 TCTTGGTTGGGTATAAGAAATGATACT 58.222 33.333 0.00 0.00 0.00 2.12
6213 7340 8.974060 TTGGTTGGGTATAAGAAATGATACTC 57.026 34.615 0.00 0.00 30.84 2.59
6214 7341 8.096621 TGGTTGGGTATAAGAAATGATACTCA 57.903 34.615 0.00 0.00 37.26 3.41
6215 7342 8.210946 TGGTTGGGTATAAGAAATGATACTCAG 58.789 37.037 0.00 0.00 39.56 3.35
6216 7343 8.429641 GGTTGGGTATAAGAAATGATACTCAGA 58.570 37.037 0.00 0.00 39.56 3.27
6217 7344 9.482627 GTTGGGTATAAGAAATGATACTCAGAG 57.517 37.037 0.00 0.00 39.56 3.35
6218 7345 9.434275 TTGGGTATAAGAAATGATACTCAGAGA 57.566 33.333 3.79 0.00 39.56 3.10
6219 7346 9.434275 TGGGTATAAGAAATGATACTCAGAGAA 57.566 33.333 3.79 0.00 34.73 2.87
6220 7347 9.699703 GGGTATAAGAAATGATACTCAGAGAAC 57.300 37.037 3.79 0.00 30.60 3.01
6232 7359 8.915036 TGATACTCAGAGAACTAAATTACTCCC 58.085 37.037 3.79 0.00 0.00 4.30
6233 7360 9.138596 GATACTCAGAGAACTAAATTACTCCCT 57.861 37.037 3.79 0.00 0.00 4.20
6234 7361 7.412853 ACTCAGAGAACTAAATTACTCCCTC 57.587 40.000 3.79 0.00 0.00 4.30
6235 7362 7.186268 ACTCAGAGAACTAAATTACTCCCTCT 58.814 38.462 3.79 0.00 0.00 3.69
6236 7363 7.123547 ACTCAGAGAACTAAATTACTCCCTCTG 59.876 40.741 3.79 15.33 44.45 3.35
6237 7364 6.954684 TCAGAGAACTAAATTACTCCCTCTGT 59.045 38.462 18.37 0.00 43.87 3.41
6238 7365 8.114102 TCAGAGAACTAAATTACTCCCTCTGTA 58.886 37.037 18.37 9.15 43.87 2.74
6239 7366 8.750298 CAGAGAACTAAATTACTCCCTCTGTAA 58.250 37.037 0.00 0.00 40.61 2.41
6240 7367 9.322769 AGAGAACTAAATTACTCCCTCTGTAAA 57.677 33.333 0.00 0.00 34.20 2.01
6241 7368 9.368674 GAGAACTAAATTACTCCCTCTGTAAAC 57.631 37.037 0.00 0.00 34.20 2.01
6242 7369 9.102453 AGAACTAAATTACTCCCTCTGTAAACT 57.898 33.333 0.00 0.00 34.20 2.66
6253 7380 9.448587 ACTCCCTCTGTAAACTAATATAATGGT 57.551 33.333 0.00 0.00 0.00 3.55
6254 7381 9.712305 CTCCCTCTGTAAACTAATATAATGGTG 57.288 37.037 0.00 0.00 0.00 4.17
6255 7382 9.442062 TCCCTCTGTAAACTAATATAATGGTGA 57.558 33.333 0.00 0.00 0.00 4.02
6275 7402 9.664332 ATGGTGATCTAAATGCTCATATACTTC 57.336 33.333 0.00 0.00 0.00 3.01
6276 7403 8.097038 TGGTGATCTAAATGCTCATATACTTCC 58.903 37.037 0.00 0.00 0.00 3.46
6277 7404 8.317679 GGTGATCTAAATGCTCATATACTTCCT 58.682 37.037 0.00 0.00 0.00 3.36
6278 7405 9.364989 GTGATCTAAATGCTCATATACTTCCTC 57.635 37.037 0.00 0.00 0.00 3.71
6279 7406 8.535335 TGATCTAAATGCTCATATACTTCCTCC 58.465 37.037 0.00 0.00 0.00 4.30
6280 7407 7.855784 TCTAAATGCTCATATACTTCCTCCA 57.144 36.000 0.00 0.00 0.00 3.86
6281 7408 8.441311 TCTAAATGCTCATATACTTCCTCCAT 57.559 34.615 0.00 0.00 0.00 3.41
6282 7409 8.535335 TCTAAATGCTCATATACTTCCTCCATC 58.465 37.037 0.00 0.00 0.00 3.51
6283 7410 6.949117 AATGCTCATATACTTCCTCCATCT 57.051 37.500 0.00 0.00 0.00 2.90
6284 7411 5.991933 TGCTCATATACTTCCTCCATCTC 57.008 43.478 0.00 0.00 0.00 2.75
6285 7412 5.397360 TGCTCATATACTTCCTCCATCTCA 58.603 41.667 0.00 0.00 0.00 3.27
6286 7413 5.840693 TGCTCATATACTTCCTCCATCTCAA 59.159 40.000 0.00 0.00 0.00 3.02
6287 7414 6.327365 TGCTCATATACTTCCTCCATCTCAAA 59.673 38.462 0.00 0.00 0.00 2.69
6288 7415 7.147497 TGCTCATATACTTCCTCCATCTCAAAA 60.147 37.037 0.00 0.00 0.00 2.44
6289 7416 7.882271 GCTCATATACTTCCTCCATCTCAAAAT 59.118 37.037 0.00 0.00 0.00 1.82
6294 7421 8.970859 ATACTTCCTCCATCTCAAAATAAGTG 57.029 34.615 0.00 0.00 0.00 3.16
6295 7422 7.020827 ACTTCCTCCATCTCAAAATAAGTGA 57.979 36.000 0.00 0.00 0.00 3.41
6296 7423 6.881602 ACTTCCTCCATCTCAAAATAAGTGAC 59.118 38.462 0.00 0.00 0.00 3.67
6297 7424 6.627087 TCCTCCATCTCAAAATAAGTGACT 57.373 37.500 0.00 0.00 0.00 3.41
6298 7425 6.644347 TCCTCCATCTCAAAATAAGTGACTC 58.356 40.000 0.00 0.00 0.00 3.36
6299 7426 6.213397 TCCTCCATCTCAAAATAAGTGACTCA 59.787 38.462 0.00 0.00 0.00 3.41
6300 7427 6.881065 CCTCCATCTCAAAATAAGTGACTCAA 59.119 38.462 0.00 0.00 0.00 3.02
6301 7428 7.148340 CCTCCATCTCAAAATAAGTGACTCAAC 60.148 40.741 0.00 0.00 0.00 3.18
6302 7429 7.453393 TCCATCTCAAAATAAGTGACTCAACT 58.547 34.615 0.00 0.00 0.00 3.16
6303 7430 7.939039 TCCATCTCAAAATAAGTGACTCAACTT 59.061 33.333 0.00 0.00 42.89 2.66
6304 7431 8.571336 CCATCTCAAAATAAGTGACTCAACTTT 58.429 33.333 0.00 0.00 40.77 2.66
6305 7432 9.390795 CATCTCAAAATAAGTGACTCAACTTTG 57.609 33.333 0.00 0.00 40.77 2.77
6306 7433 8.506168 TCTCAAAATAAGTGACTCAACTTTGT 57.494 30.769 0.00 0.00 40.77 2.83
6307 7434 9.607988 TCTCAAAATAAGTGACTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
6308 7435 9.651718 CTCAAAATAAGTGACTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
6309 7436 9.391006 TCAAAATAAGTGACTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
6315 7442 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
6316 7443 9.880157 AAGTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
6317 7444 9.530633 AGTGACTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
6318 7445 9.310716 GTGACTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
6342 7469 9.189723 AGTACAAAGTTAATACAAACTCGAGTC 57.810 33.333 20.33 2.53 38.76 3.36
6343 7470 8.971321 GTACAAAGTTAATACAAACTCGAGTCA 58.029 33.333 20.33 5.05 38.76 3.41
6344 7471 7.848491 ACAAAGTTAATACAAACTCGAGTCAC 58.152 34.615 20.33 5.87 38.76 3.67
6345 7472 7.709613 ACAAAGTTAATACAAACTCGAGTCACT 59.290 33.333 20.33 0.00 38.76 3.41
6346 7473 8.548721 CAAAGTTAATACAAACTCGAGTCACTT 58.451 33.333 20.33 6.87 38.76 3.16
6347 7474 9.754382 AAAGTTAATACAAACTCGAGTCACTTA 57.246 29.630 20.33 8.44 38.76 2.24
6348 7475 9.924650 AAGTTAATACAAACTCGAGTCACTTAT 57.075 29.630 20.33 10.35 38.76 1.73
6349 7476 9.924650 AGTTAATACAAACTCGAGTCACTTATT 57.075 29.630 20.33 18.91 34.60 1.40
6354 7481 7.653767 ACAAACTCGAGTCACTTATTTTAGG 57.346 36.000 20.33 0.00 0.00 2.69
6355 7482 7.439381 ACAAACTCGAGTCACTTATTTTAGGA 58.561 34.615 20.33 0.00 0.00 2.94
6356 7483 7.384387 ACAAACTCGAGTCACTTATTTTAGGAC 59.616 37.037 20.33 0.00 0.00 3.85
6357 7484 5.638783 ACTCGAGTCACTTATTTTAGGACG 58.361 41.667 13.58 0.00 33.84 4.79
6358 7485 4.990257 TCGAGTCACTTATTTTAGGACGG 58.010 43.478 0.00 0.00 33.84 4.79
6359 7486 4.701651 TCGAGTCACTTATTTTAGGACGGA 59.298 41.667 0.00 0.00 33.84 4.69
6360 7487 5.035443 CGAGTCACTTATTTTAGGACGGAG 58.965 45.833 0.00 0.00 33.84 4.63
6361 7488 5.340439 AGTCACTTATTTTAGGACGGAGG 57.660 43.478 0.00 0.00 33.84 4.30
6362 7489 5.021458 AGTCACTTATTTTAGGACGGAGGA 58.979 41.667 0.00 0.00 33.84 3.71
6363 7490 5.482878 AGTCACTTATTTTAGGACGGAGGAA 59.517 40.000 0.00 0.00 33.84 3.36
6364 7491 5.811100 GTCACTTATTTTAGGACGGAGGAAG 59.189 44.000 0.00 0.00 0.00 3.46
6365 7492 5.482878 TCACTTATTTTAGGACGGAGGAAGT 59.517 40.000 0.00 0.00 0.00 3.01
6366 7493 6.664816 TCACTTATTTTAGGACGGAGGAAGTA 59.335 38.462 0.00 0.00 0.00 2.24
6367 7494 7.343833 TCACTTATTTTAGGACGGAGGAAGTAT 59.656 37.037 0.00 0.00 0.00 2.12
6368 7495 7.985752 CACTTATTTTAGGACGGAGGAAGTATT 59.014 37.037 0.00 0.00 0.00 1.89
6369 7496 9.205513 ACTTATTTTAGGACGGAGGAAGTATTA 57.794 33.333 0.00 0.00 0.00 0.98
6370 7497 9.694137 CTTATTTTAGGACGGAGGAAGTATTAG 57.306 37.037 0.00 0.00 0.00 1.73
6371 7498 7.909485 ATTTTAGGACGGAGGAAGTATTAGA 57.091 36.000 0.00 0.00 0.00 2.10
6372 7499 7.909485 TTTTAGGACGGAGGAAGTATTAGAT 57.091 36.000 0.00 0.00 0.00 1.98
6373 7500 7.909485 TTTAGGACGGAGGAAGTATTAGATT 57.091 36.000 0.00 0.00 0.00 2.40
6374 7501 9.425248 TTTTAGGACGGAGGAAGTATTAGATTA 57.575 33.333 0.00 0.00 0.00 1.75
6375 7502 6.897706 AGGACGGAGGAAGTATTAGATTAC 57.102 41.667 0.00 0.00 0.00 1.89
6376 7503 6.612741 AGGACGGAGGAAGTATTAGATTACT 58.387 40.000 0.00 0.00 33.85 2.24
6377 7504 6.716173 AGGACGGAGGAAGTATTAGATTACTC 59.284 42.308 0.00 0.00 35.91 2.59
6383 7510 8.973182 GGAGGAAGTATTAGATTACTCCCTATG 58.027 40.741 5.07 0.00 46.81 2.23
6384 7511 9.536510 GAGGAAGTATTAGATTACTCCCTATGT 57.463 37.037 0.00 0.00 37.10 2.29
6394 7521 8.709272 AGATTACTCCCTATGTAAACTACTCC 57.291 38.462 0.00 0.00 33.37 3.85
6395 7522 7.729431 AGATTACTCCCTATGTAAACTACTCCC 59.271 40.741 0.00 0.00 33.37 4.30
6396 7523 5.484734 ACTCCCTATGTAAACTACTCCCT 57.515 43.478 0.00 0.00 0.00 4.20
6397 7524 5.456779 ACTCCCTATGTAAACTACTCCCTC 58.543 45.833 0.00 0.00 0.00 4.30
6398 7525 5.196165 ACTCCCTATGTAAACTACTCCCTCT 59.804 44.000 0.00 0.00 0.00 3.69
6399 7526 5.455872 TCCCTATGTAAACTACTCCCTCTG 58.544 45.833 0.00 0.00 0.00 3.35
6400 7527 5.043582 TCCCTATGTAAACTACTCCCTCTGT 60.044 44.000 0.00 0.00 0.00 3.41
6401 7528 5.661759 CCCTATGTAAACTACTCCCTCTGTT 59.338 44.000 0.00 0.00 0.00 3.16
6402 7529 6.183360 CCCTATGTAAACTACTCCCTCTGTTC 60.183 46.154 0.00 0.00 0.00 3.18
6403 7530 5.678955 ATGTAAACTACTCCCTCTGTTCC 57.321 43.478 0.00 0.00 0.00 3.62
6404 7531 4.748701 TGTAAACTACTCCCTCTGTTCCT 58.251 43.478 0.00 0.00 0.00 3.36
6405 7532 5.895807 TGTAAACTACTCCCTCTGTTCCTA 58.104 41.667 0.00 0.00 0.00 2.94
6406 7533 6.317312 TGTAAACTACTCCCTCTGTTCCTAA 58.683 40.000 0.00 0.00 0.00 2.69
6407 7534 6.783977 TGTAAACTACTCCCTCTGTTCCTAAA 59.216 38.462 0.00 0.00 0.00 1.85
6408 7535 6.954352 AAACTACTCCCTCTGTTCCTAAAT 57.046 37.500 0.00 0.00 0.00 1.40
6409 7536 8.975295 GTAAACTACTCCCTCTGTTCCTAAATA 58.025 37.037 0.00 0.00 0.00 1.40
6410 7537 8.625467 AAACTACTCCCTCTGTTCCTAAATAT 57.375 34.615 0.00 0.00 0.00 1.28
6411 7538 9.725206 AAACTACTCCCTCTGTTCCTAAATATA 57.275 33.333 0.00 0.00 0.00 0.86
6412 7539 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
6413 7540 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
6414 7541 9.369672 CTACTCCCTCTGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 0.00 2.24
6415 7542 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
6416 7543 7.290481 ACTCCCTCTGTTCCTAAATATAAGTCC 59.710 40.741 0.00 0.00 0.00 3.85
6417 7544 7.371043 TCCCTCTGTTCCTAAATATAAGTCCT 58.629 38.462 0.00 0.00 0.00 3.85
6418 7545 7.849904 TCCCTCTGTTCCTAAATATAAGTCCTT 59.150 37.037 0.00 0.00 0.00 3.36
6419 7546 8.495260 CCCTCTGTTCCTAAATATAAGTCCTTT 58.505 37.037 0.00 0.00 0.00 3.11
6420 7547 9.907229 CCTCTGTTCCTAAATATAAGTCCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
6437 7564 9.959721 AAGTCCTTTTAGAGATTGCACTATAAA 57.040 29.630 1.26 1.26 33.64 1.40
6438 7565 9.384764 AGTCCTTTTAGAGATTGCACTATAAAC 57.615 33.333 4.22 0.00 34.69 2.01
6439 7566 9.384764 GTCCTTTTAGAGATTGCACTATAAACT 57.615 33.333 4.22 0.00 34.69 2.66
6476 7603 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
6477 7604 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
6478 7605 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
6479 7606 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
6480 7607 6.939163 AGTGTAGATTCACTCATTTTGCTTCT 59.061 34.615 0.00 0.00 44.07 2.85
6481 7608 8.097038 AGTGTAGATTCACTCATTTTGCTTCTA 58.903 33.333 0.00 0.00 44.07 2.10
6482 7609 8.721478 GTGTAGATTCACTCATTTTGCTTCTAA 58.279 33.333 0.00 0.00 35.68 2.10
6483 7610 9.283768 TGTAGATTCACTCATTTTGCTTCTAAA 57.716 29.630 0.00 0.00 0.00 1.85
6513 7640 9.959721 AAGTCCTTTTAGAGATTGCACTATAAA 57.040 29.630 1.26 1.26 33.64 1.40
6514 7641 9.384764 AGTCCTTTTAGAGATTGCACTATAAAC 57.615 33.333 4.22 0.00 34.69 2.01
6515 7642 9.384764 GTCCTTTTAGAGATTGCACTATAAACT 57.615 33.333 4.22 0.00 34.69 2.66
6552 7679 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
6553 7680 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
6554 7681 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
6555 7682 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
6556 7683 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
6557 7684 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
6558 7685 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
6559 7686 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
6560 7687 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
6561 7688 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
6562 7689 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
6563 7690 7.428282 TTCACTCATTTTGCTTCGTATGTAA 57.572 32.000 0.00 0.00 0.00 2.41
6564 7691 7.609760 TCACTCATTTTGCTTCGTATGTAAT 57.390 32.000 0.00 0.00 0.00 1.89
6565 7692 7.684670 TCACTCATTTTGCTTCGTATGTAATC 58.315 34.615 0.00 0.00 0.00 1.75
6566 7693 7.549134 TCACTCATTTTGCTTCGTATGTAATCT 59.451 33.333 0.00 0.00 0.00 2.40
6567 7694 8.817100 CACTCATTTTGCTTCGTATGTAATCTA 58.183 33.333 0.00 0.00 0.00 1.98
6568 7695 9.547753 ACTCATTTTGCTTCGTATGTAATCTAT 57.452 29.630 0.00 0.00 0.00 1.98
6571 7698 9.935682 CATTTTGCTTCGTATGTAATCTATTGT 57.064 29.630 0.00 0.00 0.00 2.71
6572 7699 9.935682 ATTTTGCTTCGTATGTAATCTATTGTG 57.064 29.630 0.00 0.00 0.00 3.33
6573 7700 7.477144 TTGCTTCGTATGTAATCTATTGTGG 57.523 36.000 0.00 0.00 0.00 4.17
6574 7701 6.811954 TGCTTCGTATGTAATCTATTGTGGA 58.188 36.000 0.00 0.00 0.00 4.02
6575 7702 7.269316 TGCTTCGTATGTAATCTATTGTGGAA 58.731 34.615 0.00 0.00 0.00 3.53
6576 7703 7.931407 TGCTTCGTATGTAATCTATTGTGGAAT 59.069 33.333 0.00 0.00 0.00 3.01
6577 7704 8.436200 GCTTCGTATGTAATCTATTGTGGAATC 58.564 37.037 0.00 0.00 0.00 2.52
6578 7705 9.698309 CTTCGTATGTAATCTATTGTGGAATCT 57.302 33.333 0.00 0.00 0.00 2.40
6579 7706 9.692749 TTCGTATGTAATCTATTGTGGAATCTC 57.307 33.333 0.00 0.00 0.00 2.75
6580 7707 9.078990 TCGTATGTAATCTATTGTGGAATCTCT 57.921 33.333 0.00 0.00 0.00 3.10
6608 7735 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
6609 7736 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
6610 7737 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
6611 7738 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
6612 7739 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
6613 7740 9.377238 ACTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
6642 7769 6.793505 AATAGTGACCTAAACTACAGAGGG 57.206 41.667 0.00 0.00 33.11 4.30
6643 7770 4.399483 AGTGACCTAAACTACAGAGGGA 57.601 45.455 0.00 0.00 34.41 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.717084 CCTCTAGTGGAGAACTTGGAAAATTT 59.283 38.462 4.84 0.00 44.45 1.82
8 9 4.041691 CCCTCTAGTGGAGAACTTGGAAAA 59.958 45.833 12.54 0.00 44.45 2.29
15 16 1.562783 GTGCCCTCTAGTGGAGAACT 58.437 55.000 12.54 0.00 44.45 3.01
79 80 2.969238 CCGCACCATCTGATCCGC 60.969 66.667 0.00 0.00 0.00 5.54
80 81 1.300465 CTCCGCACCATCTGATCCG 60.300 63.158 0.00 0.00 0.00 4.18
81 82 1.596477 GCTCCGCACCATCTGATCC 60.596 63.158 0.00 0.00 0.00 3.36
82 83 1.953138 CGCTCCGCACCATCTGATC 60.953 63.158 0.00 0.00 0.00 2.92
83 84 2.107750 CGCTCCGCACCATCTGAT 59.892 61.111 0.00 0.00 0.00 2.90
84 85 3.381983 ACGCTCCGCACCATCTGA 61.382 61.111 0.00 0.00 0.00 3.27
85 86 3.190849 CACGCTCCGCACCATCTG 61.191 66.667 0.00 0.00 0.00 2.90
86 87 4.457496 CCACGCTCCGCACCATCT 62.457 66.667 0.00 0.00 0.00 2.90
87 88 3.740128 ATCCACGCTCCGCACCATC 62.740 63.158 0.00 0.00 0.00 3.51
88 89 3.785859 ATCCACGCTCCGCACCAT 61.786 61.111 0.00 0.00 0.00 3.55
89 90 4.758251 CATCCACGCTCCGCACCA 62.758 66.667 0.00 0.00 0.00 4.17
134 135 5.643379 TGGCAGCAATTACTCCTTTAAAG 57.357 39.130 8.32 8.32 0.00 1.85
184 185 6.949352 AGGCCATGAAGATATGTAAAGTTG 57.051 37.500 5.01 0.00 0.00 3.16
187 188 9.778741 TTTAGTAGGCCATGAAGATATGTAAAG 57.221 33.333 5.01 0.00 0.00 1.85
200 201 3.080300 TGGTTGGTTTAGTAGGCCATG 57.920 47.619 5.01 0.00 31.71 3.66
222 223 1.234615 ACCAGCGGTTCACCATTTCG 61.235 55.000 0.00 0.00 35.14 3.46
237 238 3.377172 AGGTTTTCAAACAGTCGAACCAG 59.623 43.478 4.85 0.00 40.63 4.00
242 243 4.034279 CGGTTAAGGTTTTCAAACAGTCGA 59.966 41.667 4.85 0.00 40.63 4.20
249 250 5.640189 TGTTGTCGGTTAAGGTTTTCAAA 57.360 34.783 0.00 0.00 0.00 2.69
260 261 3.395639 GAACTGGTGATGTTGTCGGTTA 58.604 45.455 0.00 0.00 0.00 2.85
262 263 1.872237 CGAACTGGTGATGTTGTCGGT 60.872 52.381 0.00 0.00 0.00 4.69
290 302 4.039366 GTGGTGCCCTAATTTTGTGGTTTA 59.961 41.667 0.00 0.00 0.00 2.01
295 307 1.067915 CGGTGGTGCCCTAATTTTGTG 60.068 52.381 0.00 0.00 0.00 3.33
297 309 0.530288 CCGGTGGTGCCCTAATTTTG 59.470 55.000 0.00 0.00 0.00 2.44
298 310 1.254975 GCCGGTGGTGCCCTAATTTT 61.255 55.000 1.90 0.00 0.00 1.82
316 328 1.169034 GGCTCCTCCAAATCCATCGC 61.169 60.000 0.00 0.00 34.01 4.58
354 366 1.683707 TCATCAGAGGACGCTGGCT 60.684 57.895 3.29 0.00 36.55 4.75
370 382 1.296392 CCGAGGATGCAACAGGTCA 59.704 57.895 0.00 0.00 0.00 4.02
377 389 0.329931 TTTTAGGCCCGAGGATGCAA 59.670 50.000 0.00 0.00 0.00 4.08
392 404 3.644966 ATGATCTTGGTCGCCCTTTTA 57.355 42.857 0.00 0.00 0.00 1.52
393 405 2.514458 ATGATCTTGGTCGCCCTTTT 57.486 45.000 0.00 0.00 0.00 2.27
394 406 2.514458 AATGATCTTGGTCGCCCTTT 57.486 45.000 0.00 0.00 0.00 3.11
402 414 3.972133 TGCCATGAGAAATGATCTTGGT 58.028 40.909 0.00 0.00 41.66 3.67
414 426 2.282407 CACGACATCATTGCCATGAGA 58.718 47.619 6.62 0.00 42.93 3.27
418 430 1.097232 CCACACGACATCATTGCCAT 58.903 50.000 0.00 0.00 0.00 4.40
434 446 1.275291 TGAAGCAGCACTACCTACCAC 59.725 52.381 0.00 0.00 0.00 4.16
438 450 3.118629 CCATCTTGAAGCAGCACTACCTA 60.119 47.826 0.00 0.00 0.00 3.08
442 454 4.406972 AGATACCATCTTGAAGCAGCACTA 59.593 41.667 0.00 0.00 35.76 2.74
516 528 1.330655 ACGACTCCAATCCCGCTGAT 61.331 55.000 0.00 0.00 34.22 2.90
523 535 0.179108 CTTCCCGACGACTCCAATCC 60.179 60.000 0.00 0.00 0.00 3.01
531 543 1.725164 CAAAAGCTACTTCCCGACGAC 59.275 52.381 0.00 0.00 0.00 4.34
532 544 1.614903 TCAAAAGCTACTTCCCGACGA 59.385 47.619 0.00 0.00 0.00 4.20
569 581 0.969894 AGAAGACCCTGGACAGAACG 59.030 55.000 0.00 0.00 0.00 3.95
570 582 3.142174 CAAAGAAGACCCTGGACAGAAC 58.858 50.000 0.00 0.00 0.00 3.01
578 590 6.166982 CCTAGAACTAACAAAGAAGACCCTG 58.833 44.000 0.00 0.00 0.00 4.45
622 634 1.616865 CACACAGGACCCTACGAGAAA 59.383 52.381 0.00 0.00 0.00 2.52
626 638 2.165167 CTTACACACAGGACCCTACGA 58.835 52.381 0.00 0.00 0.00 3.43
627 639 2.165167 TCTTACACACAGGACCCTACG 58.835 52.381 0.00 0.00 0.00 3.51
649 661 3.782046 AGTCGTGGCATACAACATCTAC 58.218 45.455 0.00 0.00 0.00 2.59
650 662 4.081917 TGAAGTCGTGGCATACAACATCTA 60.082 41.667 0.00 0.00 0.00 1.98
651 663 3.262420 GAAGTCGTGGCATACAACATCT 58.738 45.455 0.00 0.00 0.00 2.90
652 664 3.000041 TGAAGTCGTGGCATACAACATC 59.000 45.455 0.00 0.00 0.00 3.06
653 665 3.052455 TGAAGTCGTGGCATACAACAT 57.948 42.857 0.00 0.00 0.00 2.71
696 708 4.081476 GCCCCAGATGCTTCATTACTTTTT 60.081 41.667 2.07 0.00 0.00 1.94
697 709 3.448660 GCCCCAGATGCTTCATTACTTTT 59.551 43.478 2.07 0.00 0.00 2.27
698 710 3.026694 GCCCCAGATGCTTCATTACTTT 58.973 45.455 2.07 0.00 0.00 2.66
699 711 2.659428 GCCCCAGATGCTTCATTACTT 58.341 47.619 2.07 0.00 0.00 2.24
700 712 1.133668 GGCCCCAGATGCTTCATTACT 60.134 52.381 2.07 0.00 0.00 2.24
701 713 1.133668 AGGCCCCAGATGCTTCATTAC 60.134 52.381 0.00 0.00 0.00 1.89
730 742 1.133253 CATCCGTTGCTGAGTTGCG 59.867 57.895 0.00 0.00 35.36 4.85
731 743 0.955428 TCCATCCGTTGCTGAGTTGC 60.955 55.000 0.00 0.00 0.00 4.17
749 761 8.575565 TCTGTCTTTATATTTACTGCGTCATC 57.424 34.615 0.00 0.00 0.00 2.92
750 762 8.942338 TTCTGTCTTTATATTTACTGCGTCAT 57.058 30.769 0.00 0.00 0.00 3.06
751 763 8.766000 TTTCTGTCTTTATATTTACTGCGTCA 57.234 30.769 0.00 0.00 0.00 4.35
771 804 1.795286 GCTTCGCCTCGGATATTTCTG 59.205 52.381 0.00 0.00 0.00 3.02
838 871 3.058155 GCTCTTCTCGTTTTCCTTTTCCC 60.058 47.826 0.00 0.00 0.00 3.97
938 972 1.139095 GCCGGTTCGATCGAGAACT 59.861 57.895 18.54 0.00 46.99 3.01
1365 1693 0.238289 CATGTGCCAACGTCAGAACC 59.762 55.000 0.00 0.00 0.00 3.62
1459 1787 2.987125 GCGGCCTCCTTCAGGTAA 59.013 61.111 0.00 0.00 45.61 2.85
1584 2062 5.649782 ATTGAAATGCCTGAAAACGATCT 57.350 34.783 0.00 0.00 0.00 2.75
1587 2065 6.321717 GTGATATTGAAATGCCTGAAAACGA 58.678 36.000 0.00 0.00 0.00 3.85
1590 2068 6.507958 TCGTGATATTGAAATGCCTGAAAA 57.492 33.333 0.00 0.00 0.00 2.29
1615 2093 2.357327 TGTACACCGAAATCCGACAG 57.643 50.000 0.00 0.00 41.76 3.51
1619 2097 3.000925 GCAGTAATGTACACCGAAATCCG 59.999 47.826 0.00 0.00 38.18 4.18
1620 2098 4.189231 AGCAGTAATGTACACCGAAATCC 58.811 43.478 0.00 0.00 0.00 3.01
1621 2099 6.040878 ACTAGCAGTAATGTACACCGAAATC 58.959 40.000 0.00 0.00 0.00 2.17
1622 2100 5.974108 ACTAGCAGTAATGTACACCGAAAT 58.026 37.500 0.00 0.00 0.00 2.17
1623 2101 5.395682 ACTAGCAGTAATGTACACCGAAA 57.604 39.130 0.00 0.00 0.00 3.46
1624 2102 5.649395 AGTACTAGCAGTAATGTACACCGAA 59.351 40.000 0.00 0.00 38.09 4.30
1625 2103 5.188434 AGTACTAGCAGTAATGTACACCGA 58.812 41.667 0.00 0.00 38.09 4.69
1626 2104 5.496133 AGTACTAGCAGTAATGTACACCG 57.504 43.478 0.00 0.00 38.09 4.94
1627 2105 6.755607 GGAAAGTACTAGCAGTAATGTACACC 59.244 42.308 0.00 0.00 38.09 4.16
1652 2130 4.215965 CAACCAACGAGTAAAATGGAACG 58.784 43.478 0.00 0.00 36.75 3.95
1666 2144 4.856664 AGACTATCGCTATACAACCAACG 58.143 43.478 0.00 0.00 0.00 4.10
1675 2153 5.557866 TGCTTGGTCTAGACTATCGCTATA 58.442 41.667 21.88 4.58 0.00 1.31
1872 2358 1.520787 CCATGCGAACTACCGGGAC 60.521 63.158 6.32 0.00 0.00 4.46
1906 2393 4.146961 GCAAACATATATGTGCATCGCAAC 59.853 41.667 18.94 0.00 41.47 4.17
1968 2455 6.115446 TGAAATAGGATGCAGTAGAACTTGG 58.885 40.000 0.00 0.00 0.00 3.61
2001 2488 4.096231 TGGGCATGATCTGAAACATTTACG 59.904 41.667 0.00 0.00 0.00 3.18
2848 3338 7.706281 ACATGTGAGCTTAGAGATTAATTCG 57.294 36.000 0.00 0.00 0.00 3.34
2924 3414 0.469494 TGAAGCTGCACTCCAACAGA 59.531 50.000 1.02 0.00 35.90 3.41
2954 3463 7.921041 ACTTCTCAGGGATATCTTAATCACA 57.079 36.000 2.05 0.00 31.25 3.58
2968 3477 1.902508 TGCCAGAACTACTTCTCAGGG 59.097 52.381 0.00 0.00 34.20 4.45
2978 3487 6.042093 CCACTTCTCCTATAATGCCAGAACTA 59.958 42.308 0.00 0.00 0.00 2.24
2979 3488 5.163258 CCACTTCTCCTATAATGCCAGAACT 60.163 44.000 0.00 0.00 0.00 3.01
2980 3489 5.059833 CCACTTCTCCTATAATGCCAGAAC 58.940 45.833 0.00 0.00 0.00 3.01
2981 3490 4.968719 TCCACTTCTCCTATAATGCCAGAA 59.031 41.667 0.00 0.00 0.00 3.02
2982 3491 4.556697 TCCACTTCTCCTATAATGCCAGA 58.443 43.478 0.00 0.00 0.00 3.86
2983 3492 4.346418 ACTCCACTTCTCCTATAATGCCAG 59.654 45.833 0.00 0.00 0.00 4.85
3095 3611 0.465705 TGCTATCTCTTTGGCTCCCG 59.534 55.000 0.00 0.00 0.00 5.14
3331 3852 1.153489 CAGATCCAGTCCGTGCAGG 60.153 63.158 0.00 0.00 42.97 4.85
3346 3867 3.763897 TGCAGCACTATTAGACACTCAGA 59.236 43.478 0.00 0.00 0.00 3.27
3722 4731 3.799574 GCAATCAAGTGGATGCACAACAA 60.800 43.478 20.21 2.29 36.02 2.83
3892 4901 6.252599 AGGTTGCCTCACATAAATATCTCA 57.747 37.500 0.00 0.00 0.00 3.27
4056 5067 2.000447 GAACAGTGGATTGACGGTAGC 59.000 52.381 0.00 0.00 0.00 3.58
4246 5258 7.767261 AGGCAAATGCGTTAATTGTATAAGAA 58.233 30.769 0.00 0.00 43.26 2.52
4369 5381 2.149803 TAGCACGTGAAGGGACACCG 62.150 60.000 22.23 0.00 43.47 4.94
4573 5585 1.070445 CTTGCTGCCATTGTTTTCCCA 59.930 47.619 0.00 0.00 0.00 4.37
4757 5775 8.641498 AGTCAAATAACTGATGAATCTTGGTT 57.359 30.769 0.00 0.00 0.00 3.67
4993 6011 9.825109 GACAATTATAGAGGATAGAAATAGCCC 57.175 37.037 0.00 0.00 0.00 5.19
5112 6130 4.325028 AAGAAATGTCAAATGCTGCACA 57.675 36.364 3.57 0.00 0.00 4.57
5113 6131 6.768029 TTAAAGAAATGTCAAATGCTGCAC 57.232 33.333 3.57 0.00 0.00 4.57
5310 6328 1.306482 CTCTTCCTCCCCAGGCAGA 60.306 63.158 0.00 0.00 39.56 4.26
5322 6340 1.349357 ACAAGCTTGGACCTCTCTTCC 59.651 52.381 29.18 0.00 0.00 3.46
5442 6460 1.560923 GGATCAACTCGTCGGTGATG 58.439 55.000 11.63 2.16 0.00 3.07
5505 6523 3.624300 CTCGCCATCAGCTTCGCG 61.624 66.667 0.00 0.00 45.76 5.87
5595 6613 2.992689 TGGTGCTCGGCGACCTTA 60.993 61.111 15.97 0.00 33.31 2.69
5843 6968 2.560504 CACCAAAGGCTGTATATGCGA 58.439 47.619 0.00 0.00 0.00 5.10
5897 7024 3.482786 CAATCAAAGTTACAGCGACTGC 58.517 45.455 6.74 0.00 43.24 4.40
5962 7089 4.642885 CCTATGTTTAATTTCGCAAGGGGA 59.357 41.667 0.00 0.00 38.47 4.81
5969 7096 4.202111 ACATGCCCCTATGTTTAATTTCGC 60.202 41.667 0.00 0.00 38.05 4.70
6038 7165 1.478105 GATGCAAAAGCCGGGATCTTT 59.522 47.619 2.18 0.97 35.47 2.52
6063 7190 2.512286 ATCGGCTGTGTGCATCGG 60.512 61.111 0.00 0.00 45.15 4.18
6082 7209 4.522789 TGTTTAAAAGAGGGAGATGTTGCC 59.477 41.667 0.00 0.00 37.61 4.52
6086 7213 9.401058 CTAATGATGTTTAAAAGAGGGAGATGT 57.599 33.333 0.00 0.00 0.00 3.06
6121 7248 6.188871 CGCTGCATAAAATACGATGTGTTAA 58.811 36.000 0.00 0.00 0.00 2.01
6147 7274 8.160976 GCGTAACACAGAAATCTTCTACTAAAC 58.839 37.037 0.00 0.00 38.11 2.01
6149 7276 7.372714 TGCGTAACACAGAAATCTTCTACTAA 58.627 34.615 0.00 0.00 38.11 2.24
6150 7277 6.916440 TGCGTAACACAGAAATCTTCTACTA 58.084 36.000 0.00 0.00 38.11 1.82
6151 7278 5.779922 TGCGTAACACAGAAATCTTCTACT 58.220 37.500 0.00 0.00 38.11 2.57
6152 7279 6.462073 TTGCGTAACACAGAAATCTTCTAC 57.538 37.500 0.00 0.00 38.11 2.59
6159 7286 3.980646 TGCTTTGCGTAACACAGAAAT 57.019 38.095 0.00 0.00 0.00 2.17
6170 7297 3.758554 ACCAAGAAGAATATGCTTTGCGT 59.241 39.130 0.00 0.00 0.00 5.24
6188 7315 8.553153 TGAGTATCATTTCTTATACCCAACCAA 58.447 33.333 0.00 0.00 42.56 3.67
6189 7316 8.096621 TGAGTATCATTTCTTATACCCAACCA 57.903 34.615 0.00 0.00 42.56 3.67
6207 7334 9.138596 AGGGAGTAATTTAGTTCTCTGAGTATC 57.861 37.037 4.32 0.00 0.00 2.24
6208 7335 9.138596 GAGGGAGTAATTTAGTTCTCTGAGTAT 57.861 37.037 4.32 0.00 0.00 2.12
6209 7336 8.337739 AGAGGGAGTAATTTAGTTCTCTGAGTA 58.662 37.037 4.32 0.00 0.00 2.59
6210 7337 7.123547 CAGAGGGAGTAATTTAGTTCTCTGAGT 59.876 40.741 23.78 0.00 45.60 3.41
6211 7338 7.123547 ACAGAGGGAGTAATTTAGTTCTCTGAG 59.876 40.741 28.77 16.93 45.60 3.35
6212 7339 6.954684 ACAGAGGGAGTAATTTAGTTCTCTGA 59.045 38.462 28.77 0.00 45.60 3.27
6214 7341 8.896722 TTACAGAGGGAGTAATTTAGTTCTCT 57.103 34.615 10.05 10.05 0.00 3.10
6215 7342 9.368674 GTTTACAGAGGGAGTAATTTAGTTCTC 57.631 37.037 0.00 7.14 32.07 2.87
6216 7343 9.102453 AGTTTACAGAGGGAGTAATTTAGTTCT 57.898 33.333 0.00 0.00 32.07 3.01
6227 7354 9.448587 ACCATTATATTAGTTTACAGAGGGAGT 57.551 33.333 0.00 0.00 0.00 3.85
6228 7355 9.712305 CACCATTATATTAGTTTACAGAGGGAG 57.288 37.037 0.00 0.00 0.00 4.30
6229 7356 9.442062 TCACCATTATATTAGTTTACAGAGGGA 57.558 33.333 0.00 0.00 0.00 4.20
6249 7376 9.664332 GAAGTATATGAGCATTTAGATCACCAT 57.336 33.333 0.00 0.00 46.85 3.55
6250 7377 8.097038 GGAAGTATATGAGCATTTAGATCACCA 58.903 37.037 0.00 0.00 46.85 4.17
6251 7378 8.317679 AGGAAGTATATGAGCATTTAGATCACC 58.682 37.037 0.00 0.00 46.85 4.02
6252 7379 9.364989 GAGGAAGTATATGAGCATTTAGATCAC 57.635 37.037 0.00 0.00 46.85 3.06
6254 7381 8.535335 TGGAGGAAGTATATGAGCATTTAGATC 58.465 37.037 0.00 0.00 0.00 2.75
6255 7382 8.441311 TGGAGGAAGTATATGAGCATTTAGAT 57.559 34.615 0.00 0.00 0.00 1.98
6256 7383 7.855784 TGGAGGAAGTATATGAGCATTTAGA 57.144 36.000 0.00 0.00 0.00 2.10
6257 7384 8.538701 AGATGGAGGAAGTATATGAGCATTTAG 58.461 37.037 0.00 0.00 0.00 1.85
6258 7385 8.441311 AGATGGAGGAAGTATATGAGCATTTA 57.559 34.615 0.00 0.00 0.00 1.40
6259 7386 7.016957 TGAGATGGAGGAAGTATATGAGCATTT 59.983 37.037 0.00 0.00 0.00 2.32
6260 7387 6.499699 TGAGATGGAGGAAGTATATGAGCATT 59.500 38.462 0.00 0.00 0.00 3.56
6261 7388 6.021672 TGAGATGGAGGAAGTATATGAGCAT 58.978 40.000 0.00 0.00 0.00 3.79
6262 7389 5.397360 TGAGATGGAGGAAGTATATGAGCA 58.603 41.667 0.00 0.00 0.00 4.26
6263 7390 5.991933 TGAGATGGAGGAAGTATATGAGC 57.008 43.478 0.00 0.00 0.00 4.26
6269 7396 8.772250 TCACTTATTTTGAGATGGAGGAAGTAT 58.228 33.333 0.00 0.00 0.00 2.12
6270 7397 8.041323 GTCACTTATTTTGAGATGGAGGAAGTA 58.959 37.037 0.00 0.00 0.00 2.24
6271 7398 6.881602 GTCACTTATTTTGAGATGGAGGAAGT 59.118 38.462 0.00 0.00 0.00 3.01
6272 7399 7.108847 AGTCACTTATTTTGAGATGGAGGAAG 58.891 38.462 0.00 0.00 0.00 3.46
6273 7400 7.020827 AGTCACTTATTTTGAGATGGAGGAA 57.979 36.000 0.00 0.00 0.00 3.36
6274 7401 6.213397 TGAGTCACTTATTTTGAGATGGAGGA 59.787 38.462 0.00 0.00 0.00 3.71
6275 7402 6.409704 TGAGTCACTTATTTTGAGATGGAGG 58.590 40.000 0.00 0.00 0.00 4.30
6276 7403 7.605691 AGTTGAGTCACTTATTTTGAGATGGAG 59.394 37.037 0.00 0.00 0.00 3.86
6277 7404 7.453393 AGTTGAGTCACTTATTTTGAGATGGA 58.547 34.615 0.00 0.00 0.00 3.41
6278 7405 7.678947 AGTTGAGTCACTTATTTTGAGATGG 57.321 36.000 0.00 0.00 0.00 3.51
6279 7406 9.390795 CAAAGTTGAGTCACTTATTTTGAGATG 57.609 33.333 5.72 0.00 35.87 2.90
6280 7407 9.125026 ACAAAGTTGAGTCACTTATTTTGAGAT 57.875 29.630 14.62 0.00 35.87 2.75
6281 7408 8.506168 ACAAAGTTGAGTCACTTATTTTGAGA 57.494 30.769 14.62 0.00 35.87 3.27
6282 7409 9.651718 GTACAAAGTTGAGTCACTTATTTTGAG 57.348 33.333 14.62 0.00 35.87 3.02
6283 7410 9.391006 AGTACAAAGTTGAGTCACTTATTTTGA 57.609 29.630 14.62 1.37 35.87 2.69
6289 7416 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
6290 7417 8.788325 AAAGTTAGTACAAAGTTGAGTCACTT 57.212 30.769 0.00 0.00 38.74 3.16
6291 7418 9.530633 CTAAAGTTAGTACAAAGTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
6292 7419 9.310716 ACTAAAGTTAGTACAAAGTTGAGTCAC 57.689 33.333 1.81 0.00 41.92 3.67
6316 7443 9.189723 GACTCGAGTTTGTATTAACTTTGTACT 57.810 33.333 21.08 0.00 38.43 2.73
6317 7444 8.971321 TGACTCGAGTTTGTATTAACTTTGTAC 58.029 33.333 21.08 0.28 38.43 2.90
6318 7445 8.971321 GTGACTCGAGTTTGTATTAACTTTGTA 58.029 33.333 21.08 0.00 38.43 2.41
6319 7446 7.709613 AGTGACTCGAGTTTGTATTAACTTTGT 59.290 33.333 21.08 0.00 38.43 2.83
6320 7447 8.073355 AGTGACTCGAGTTTGTATTAACTTTG 57.927 34.615 21.08 0.00 38.43 2.77
6321 7448 8.658499 AAGTGACTCGAGTTTGTATTAACTTT 57.342 30.769 21.08 0.42 38.43 2.66
6322 7449 9.924650 ATAAGTGACTCGAGTTTGTATTAACTT 57.075 29.630 21.08 18.29 38.43 2.66
6323 7450 9.924650 AATAAGTGACTCGAGTTTGTATTAACT 57.075 29.630 21.08 10.17 40.92 2.24
6328 7455 9.367444 CCTAAAATAAGTGACTCGAGTTTGTAT 57.633 33.333 21.08 11.98 0.00 2.29
6329 7456 8.579006 TCCTAAAATAAGTGACTCGAGTTTGTA 58.421 33.333 21.08 10.21 0.00 2.41
6330 7457 7.384387 GTCCTAAAATAAGTGACTCGAGTTTGT 59.616 37.037 21.08 5.70 0.00 2.83
6331 7458 7.410513 CGTCCTAAAATAAGTGACTCGAGTTTG 60.411 40.741 21.08 1.11 0.00 2.93
6332 7459 6.585322 CGTCCTAAAATAAGTGACTCGAGTTT 59.415 38.462 21.08 12.75 0.00 2.66
6333 7460 6.091437 CGTCCTAAAATAAGTGACTCGAGTT 58.909 40.000 21.08 6.08 0.00 3.01
6334 7461 5.392811 CCGTCCTAAAATAAGTGACTCGAGT 60.393 44.000 20.18 20.18 0.00 4.18
6335 7462 5.035443 CCGTCCTAAAATAAGTGACTCGAG 58.965 45.833 11.84 11.84 0.00 4.04
6336 7463 4.701651 TCCGTCCTAAAATAAGTGACTCGA 59.298 41.667 0.00 0.00 0.00 4.04
6337 7464 4.990257 TCCGTCCTAAAATAAGTGACTCG 58.010 43.478 0.00 0.00 0.00 4.18
6338 7465 5.126707 TCCTCCGTCCTAAAATAAGTGACTC 59.873 44.000 0.00 0.00 0.00 3.36
6339 7466 5.021458 TCCTCCGTCCTAAAATAAGTGACT 58.979 41.667 0.00 0.00 0.00 3.41
6340 7467 5.334724 TCCTCCGTCCTAAAATAAGTGAC 57.665 43.478 0.00 0.00 0.00 3.67
6341 7468 5.482878 ACTTCCTCCGTCCTAAAATAAGTGA 59.517 40.000 0.00 0.00 0.00 3.41
6342 7469 5.731591 ACTTCCTCCGTCCTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
6343 7470 7.672122 ATACTTCCTCCGTCCTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
6344 7471 9.694137 CTAATACTTCCTCCGTCCTAAAATAAG 57.306 37.037 0.00 0.00 0.00 1.73
6345 7472 9.425248 TCTAATACTTCCTCCGTCCTAAAATAA 57.575 33.333 0.00 0.00 0.00 1.40
6346 7473 9.597681 ATCTAATACTTCCTCCGTCCTAAAATA 57.402 33.333 0.00 0.00 0.00 1.40
6347 7474 7.909485 TCTAATACTTCCTCCGTCCTAAAAT 57.091 36.000 0.00 0.00 0.00 1.82
6348 7475 7.909485 ATCTAATACTTCCTCCGTCCTAAAA 57.091 36.000 0.00 0.00 0.00 1.52
6349 7476 7.909485 AATCTAATACTTCCTCCGTCCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
6350 7477 8.223330 AGTAATCTAATACTTCCTCCGTCCTAA 58.777 37.037 0.00 0.00 32.18 2.69
6351 7478 7.753630 AGTAATCTAATACTTCCTCCGTCCTA 58.246 38.462 0.00 0.00 32.18 2.94
6352 7479 6.612741 AGTAATCTAATACTTCCTCCGTCCT 58.387 40.000 0.00 0.00 32.18 3.85
6353 7480 6.072008 GGAGTAATCTAATACTTCCTCCGTCC 60.072 46.154 0.00 0.00 36.28 4.79
6354 7481 6.072008 GGGAGTAATCTAATACTTCCTCCGTC 60.072 46.154 4.81 0.00 44.94 4.79
6355 7482 5.774184 GGGAGTAATCTAATACTTCCTCCGT 59.226 44.000 4.81 0.00 44.94 4.69
6356 7483 6.270156 GGGAGTAATCTAATACTTCCTCCG 57.730 45.833 4.81 0.00 44.94 4.63
6368 7495 9.804977 GGAGTAGTTTACATAGGGAGTAATCTA 57.195 37.037 0.00 0.00 34.82 1.98
6369 7496 7.729431 GGGAGTAGTTTACATAGGGAGTAATCT 59.271 40.741 0.00 0.00 36.22 2.40
6370 7497 7.729431 AGGGAGTAGTTTACATAGGGAGTAATC 59.271 40.741 0.00 0.00 32.07 1.75
6371 7498 7.602868 AGGGAGTAGTTTACATAGGGAGTAAT 58.397 38.462 0.00 0.00 32.07 1.89
6372 7499 6.989894 AGGGAGTAGTTTACATAGGGAGTAA 58.010 40.000 0.00 0.00 0.00 2.24
6373 7500 6.392245 AGAGGGAGTAGTTTACATAGGGAGTA 59.608 42.308 0.00 0.00 0.00 2.59
6374 7501 5.196165 AGAGGGAGTAGTTTACATAGGGAGT 59.804 44.000 0.00 0.00 0.00 3.85
6375 7502 5.536916 CAGAGGGAGTAGTTTACATAGGGAG 59.463 48.000 0.00 0.00 0.00 4.30
6376 7503 5.043582 ACAGAGGGAGTAGTTTACATAGGGA 60.044 44.000 0.00 0.00 0.00 4.20
6377 7504 5.209659 ACAGAGGGAGTAGTTTACATAGGG 58.790 45.833 0.00 0.00 0.00 3.53
6378 7505 6.183360 GGAACAGAGGGAGTAGTTTACATAGG 60.183 46.154 0.00 0.00 0.00 2.57
6379 7506 6.608002 AGGAACAGAGGGAGTAGTTTACATAG 59.392 42.308 0.00 0.00 0.00 2.23
6380 7507 6.500336 AGGAACAGAGGGAGTAGTTTACATA 58.500 40.000 0.00 0.00 0.00 2.29
6381 7508 5.342866 AGGAACAGAGGGAGTAGTTTACAT 58.657 41.667 0.00 0.00 0.00 2.29
6382 7509 4.748701 AGGAACAGAGGGAGTAGTTTACA 58.251 43.478 0.00 0.00 0.00 2.41
6383 7510 6.847421 TTAGGAACAGAGGGAGTAGTTTAC 57.153 41.667 0.00 0.00 0.00 2.01
6384 7511 9.725206 ATATTTAGGAACAGAGGGAGTAGTTTA 57.275 33.333 0.00 0.00 0.00 2.01
6385 7512 6.954352 ATTTAGGAACAGAGGGAGTAGTTT 57.046 37.500 0.00 0.00 0.00 2.66
6386 7513 9.725206 TTATATTTAGGAACAGAGGGAGTAGTT 57.275 33.333 0.00 0.00 0.00 2.24
6387 7514 9.369672 CTTATATTTAGGAACAGAGGGAGTAGT 57.630 37.037 0.00 0.00 0.00 2.73
6388 7515 9.369672 ACTTATATTTAGGAACAGAGGGAGTAG 57.630 37.037 0.00 0.00 0.00 2.57
6389 7516 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
6390 7517 7.290481 GGACTTATATTTAGGAACAGAGGGAGT 59.710 40.741 0.00 0.00 0.00 3.85
6391 7518 7.511028 AGGACTTATATTTAGGAACAGAGGGAG 59.489 40.741 0.00 0.00 0.00 4.30
6392 7519 7.371043 AGGACTTATATTTAGGAACAGAGGGA 58.629 38.462 0.00 0.00 0.00 4.20
6393 7520 7.619512 AGGACTTATATTTAGGAACAGAGGG 57.380 40.000 0.00 0.00 0.00 4.30
6394 7521 9.907229 AAAAGGACTTATATTTAGGAACAGAGG 57.093 33.333 0.00 0.00 0.00 3.69
6411 7538 9.959721 TTTATAGTGCAATCTCTAAAAGGACTT 57.040 29.630 0.00 0.00 0.00 3.01
6412 7539 9.384764 GTTTATAGTGCAATCTCTAAAAGGACT 57.615 33.333 0.00 0.00 0.00 3.85
6413 7540 9.384764 AGTTTATAGTGCAATCTCTAAAAGGAC 57.615 33.333 0.00 0.00 0.00 3.85
6456 7583 7.138692 AGAAGCAAAATGAGTGAATCTACAC 57.861 36.000 0.00 0.00 40.60 2.90
6457 7584 8.846943 TTAGAAGCAAAATGAGTGAATCTACA 57.153 30.769 0.00 0.00 0.00 2.74
6487 7614 9.959721 TTTATAGTGCAATCTCTAAAAGGACTT 57.040 29.630 0.00 0.00 0.00 3.01
6488 7615 9.384764 GTTTATAGTGCAATCTCTAAAAGGACT 57.615 33.333 0.00 0.00 0.00 3.85
6489 7616 9.384764 AGTTTATAGTGCAATCTCTAAAAGGAC 57.615 33.333 0.00 0.00 0.00 3.85
6532 7659 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
6533 7660 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
6534 7661 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
6535 7662 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
6536 7663 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
6537 7664 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
6538 7665 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
6539 7666 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
6540 7667 7.549134 AGATTACATACGAAGCAAAATGAGTGA 59.451 33.333 0.00 0.00 0.00 3.41
6541 7668 7.688372 AGATTACATACGAAGCAAAATGAGTG 58.312 34.615 0.00 0.00 0.00 3.51
6542 7669 7.849804 AGATTACATACGAAGCAAAATGAGT 57.150 32.000 0.00 0.00 0.00 3.41
6545 7672 9.935682 ACAATAGATTACATACGAAGCAAAATG 57.064 29.630 0.00 0.00 0.00 2.32
6546 7673 9.935682 CACAATAGATTACATACGAAGCAAAAT 57.064 29.630 0.00 0.00 0.00 1.82
6547 7674 8.394877 CCACAATAGATTACATACGAAGCAAAA 58.605 33.333 0.00 0.00 0.00 2.44
6548 7675 7.766738 TCCACAATAGATTACATACGAAGCAAA 59.233 33.333 0.00 0.00 0.00 3.68
6549 7676 7.269316 TCCACAATAGATTACATACGAAGCAA 58.731 34.615 0.00 0.00 0.00 3.91
6550 7677 6.811954 TCCACAATAGATTACATACGAAGCA 58.188 36.000 0.00 0.00 0.00 3.91
6551 7678 7.709269 TTCCACAATAGATTACATACGAAGC 57.291 36.000 0.00 0.00 0.00 3.86
6552 7679 9.698309 AGATTCCACAATAGATTACATACGAAG 57.302 33.333 0.00 0.00 0.00 3.79
6553 7680 9.692749 GAGATTCCACAATAGATTACATACGAA 57.307 33.333 0.00 0.00 0.00 3.85
6554 7681 9.078990 AGAGATTCCACAATAGATTACATACGA 57.921 33.333 0.00 0.00 0.00 3.43
6582 7709 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
6583 7710 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
6584 7711 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
6585 7712 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
6586 7713 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
6587 7714 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
6616 7743 9.584008 CCCTCTGTAGTTTAGGTCACTATTATA 57.416 37.037 0.00 0.00 0.00 0.98
6617 7744 8.287350 TCCCTCTGTAGTTTAGGTCACTATTAT 58.713 37.037 0.00 0.00 0.00 1.28
6618 7745 7.645942 TCCCTCTGTAGTTTAGGTCACTATTA 58.354 38.462 0.00 0.00 0.00 0.98
6619 7746 6.500336 TCCCTCTGTAGTTTAGGTCACTATT 58.500 40.000 0.00 0.00 0.00 1.73
6620 7747 6.088541 TCCCTCTGTAGTTTAGGTCACTAT 57.911 41.667 0.00 0.00 0.00 2.12
6621 7748 5.525454 TCCCTCTGTAGTTTAGGTCACTA 57.475 43.478 0.00 0.00 0.00 2.74
6622 7749 4.399483 TCCCTCTGTAGTTTAGGTCACT 57.601 45.455 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.