Multiple sequence alignment - TraesCS6D01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G247100 chr6D 100.000 4162 0 0 1 4162 350206647 350202486 0.000000e+00 7686.0
1 TraesCS6D01G247100 chr6D 94.418 1469 69 6 1854 3310 348861670 348863137 0.000000e+00 2246.0
2 TraesCS6D01G247100 chr6D 95.220 1339 62 2 1854 3191 349031733 349033070 0.000000e+00 2117.0
3 TraesCS6D01G247100 chr6D 90.286 525 46 4 1352 1876 348861131 348861650 0.000000e+00 682.0
4 TraesCS6D01G247100 chr6D 81.217 937 97 50 997 1876 349030799 349031713 0.000000e+00 682.0
5 TraesCS6D01G247100 chr6D 87.500 80 6 2 129 206 349029759 349029836 5.730000e-14 89.8
6 TraesCS6D01G247100 chr6D 94.340 53 3 0 997 1049 358216557 358216609 9.590000e-12 82.4
7 TraesCS6D01G247100 chr6D 100.000 31 0 0 895 925 358216444 358216474 1.620000e-04 58.4
8 TraesCS6D01G247100 chr6B 97.439 2304 56 3 1859 4160 529774361 529776663 0.000000e+00 3925.0
9 TraesCS6D01G247100 chr6B 95.004 1341 65 2 1859 3197 529890188 529891528 0.000000e+00 2104.0
10 TraesCS6D01G247100 chr6B 95.173 1326 64 0 1869 3194 530851868 530850543 0.000000e+00 2095.0
11 TraesCS6D01G247100 chr6B 89.217 1623 62 25 310 1876 529772772 529774337 0.000000e+00 1923.0
12 TraesCS6D01G247100 chr6B 93.893 786 46 1 3375 4158 513858945 513859730 0.000000e+00 1184.0
13 TraesCS6D01G247100 chr6B 92.844 531 29 5 1352 1876 530852430 530851903 0.000000e+00 761.0
14 TraesCS6D01G247100 chr6B 95.469 309 12 2 1568 1876 529889858 529890164 3.740000e-135 492.0
15 TraesCS6D01G247100 chr6B 74.388 449 45 40 817 1205 530852993 530852555 1.210000e-25 128.0
16 TraesCS6D01G247100 chr6B 96.078 51 2 0 3271 3321 529891784 529891834 2.670000e-12 84.2
17 TraesCS6D01G247100 chr6A 97.240 1522 29 6 1854 3369 493842800 493844314 0.000000e+00 2566.0
18 TraesCS6D01G247100 chr6A 97.958 1371 28 0 1868 3238 493756631 493758001 0.000000e+00 2377.0
19 TraesCS6D01G247100 chr6A 94.408 1359 71 4 1854 3210 495153768 495152413 0.000000e+00 2084.0
20 TraesCS6D01G247100 chr6A 92.626 1451 92 9 1869 3312 494047325 494048767 0.000000e+00 2073.0
21 TraesCS6D01G247100 chr6A 90.794 1586 79 29 338 1876 493755035 493756600 0.000000e+00 2058.0
22 TraesCS6D01G247100 chr6A 94.911 786 39 1 3374 4158 268565723 268566508 0.000000e+00 1229.0
23 TraesCS6D01G247100 chr6A 93.396 530 23 7 1353 1876 495154311 495153788 0.000000e+00 774.0
24 TraesCS6D01G247100 chr6A 88.866 476 34 9 1401 1876 493842324 493842780 6.040000e-158 568.0
25 TraesCS6D01G247100 chr6A 84.704 523 58 12 1360 1876 494046784 494047290 1.730000e-138 503.0
26 TraesCS6D01G247100 chr6A 85.646 209 20 5 1352 1554 494880834 494880630 1.170000e-50 211.0
27 TraesCS6D01G247100 chr6A 94.215 121 7 0 125 245 493754916 493755036 7.110000e-43 185.0
28 TraesCS6D01G247100 chr6A 86.667 120 8 3 770 885 493842074 493842189 4.370000e-25 126.0
29 TraesCS6D01G247100 chr6A 89.394 66 5 2 1 64 5573587 5573522 9.590000e-12 82.4
30 TraesCS6D01G247100 chr7D 94.529 786 39 3 3376 4158 178720 177936 0.000000e+00 1210.0
31 TraesCS6D01G247100 chr7D 91.429 70 5 1 1 69 565531837 565531906 1.230000e-15 95.3
32 TraesCS6D01G247100 chr1D 94.133 784 43 3 3376 4157 482994979 482995761 0.000000e+00 1190.0
33 TraesCS6D01G247100 chr1D 94.057 774 41 4 3388 4158 235669439 235668668 0.000000e+00 1170.0
34 TraesCS6D01G247100 chr1D 95.385 65 3 0 3 67 299813214 299813278 2.050000e-18 104.0
35 TraesCS6D01G247100 chr4A 94.013 785 43 4 3376 4158 27177980 27177198 0.000000e+00 1186.0
36 TraesCS6D01G247100 chr4B 94.379 765 36 5 3399 4158 64814935 64814173 0.000000e+00 1168.0
37 TraesCS6D01G247100 chr7A 93.384 786 48 3 3376 4158 37290311 37291095 0.000000e+00 1160.0
38 TraesCS6D01G247100 chr7A 94.030 67 3 1 1 66 546644585 546644519 2.650000e-17 100.0
39 TraesCS6D01G247100 chr1A 94.030 67 2 2 1 67 12427252 12427188 2.650000e-17 100.0
40 TraesCS6D01G247100 chr2D 93.750 64 3 1 1 63 563148725 563148788 1.230000e-15 95.3
41 TraesCS6D01G247100 chr5D 90.141 71 4 3 1 70 483901855 483901787 5.730000e-14 89.8
42 TraesCS6D01G247100 chr5B 89.552 67 5 2 1 65 46631896 46631962 2.670000e-12 84.2
43 TraesCS6D01G247100 chr5B 88.571 70 5 3 1 68 688161683 688161615 9.590000e-12 82.4
44 TraesCS6D01G247100 chrUn 90.566 53 5 0 997 1049 209272264 209272316 2.080000e-08 71.3
45 TraesCS6D01G247100 chrUn 100.000 31 0 0 895 925 209272151 209272181 1.620000e-04 58.4
46 TraesCS6D01G247100 chr7B 90.566 53 5 0 997 1049 642232397 642232449 2.080000e-08 71.3
47 TraesCS6D01G247100 chr7B 100.000 31 0 0 895 925 642232284 642232314 1.620000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G247100 chr6D 350202486 350206647 4161 True 7686.000000 7686 100.000000 1 4162 1 chr6D.!!$R1 4161
1 TraesCS6D01G247100 chr6D 348861131 348863137 2006 False 1464.000000 2246 92.352000 1352 3310 2 chr6D.!!$F1 1958
2 TraesCS6D01G247100 chr6D 349029759 349033070 3311 False 962.933333 2117 87.979000 129 3191 3 chr6D.!!$F2 3062
3 TraesCS6D01G247100 chr6B 529772772 529776663 3891 False 2924.000000 3925 93.328000 310 4160 2 chr6B.!!$F2 3850
4 TraesCS6D01G247100 chr6B 513858945 513859730 785 False 1184.000000 1184 93.893000 3375 4158 1 chr6B.!!$F1 783
5 TraesCS6D01G247100 chr6B 530850543 530852993 2450 True 994.666667 2095 87.468333 817 3194 3 chr6B.!!$R1 2377
6 TraesCS6D01G247100 chr6B 529889858 529891834 1976 False 893.400000 2104 95.517000 1568 3321 3 chr6B.!!$F3 1753
7 TraesCS6D01G247100 chr6A 493754916 493758001 3085 False 1540.000000 2377 94.322333 125 3238 3 chr6A.!!$F2 3113
8 TraesCS6D01G247100 chr6A 495152413 495154311 1898 True 1429.000000 2084 93.902000 1353 3210 2 chr6A.!!$R3 1857
9 TraesCS6D01G247100 chr6A 494046784 494048767 1983 False 1288.000000 2073 88.665000 1360 3312 2 chr6A.!!$F4 1952
10 TraesCS6D01G247100 chr6A 268565723 268566508 785 False 1229.000000 1229 94.911000 3374 4158 1 chr6A.!!$F1 784
11 TraesCS6D01G247100 chr6A 493842074 493844314 2240 False 1086.666667 2566 90.924333 770 3369 3 chr6A.!!$F3 2599
12 TraesCS6D01G247100 chr7D 177936 178720 784 True 1210.000000 1210 94.529000 3376 4158 1 chr7D.!!$R1 782
13 TraesCS6D01G247100 chr1D 482994979 482995761 782 False 1190.000000 1190 94.133000 3376 4157 1 chr1D.!!$F2 781
14 TraesCS6D01G247100 chr1D 235668668 235669439 771 True 1170.000000 1170 94.057000 3388 4158 1 chr1D.!!$R1 770
15 TraesCS6D01G247100 chr4A 27177198 27177980 782 True 1186.000000 1186 94.013000 3376 4158 1 chr4A.!!$R1 782
16 TraesCS6D01G247100 chr4B 64814173 64814935 762 True 1168.000000 1168 94.379000 3399 4158 1 chr4B.!!$R1 759
17 TraesCS6D01G247100 chr7A 37290311 37291095 784 False 1160.000000 1160 93.384000 3376 4158 1 chr7A.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.030101 CAGGACGGATCGAGCTTCTC 59.970 60.0 0.0 0.0 0.00 2.87 F
466 593 0.103208 AGAATCAGCCCATCGTCGTC 59.897 55.0 0.0 0.0 0.00 4.20 F
1070 1356 0.105913 ACCTCCTCCGATCTTCCTCC 60.106 60.0 0.0 0.0 0.00 4.30 F
1071 1357 0.187361 CCTCCTCCGATCTTCCTCCT 59.813 60.0 0.0 0.0 0.00 3.69 F
1442 1809 0.534412 AGACGATGACAGCCTGAAGG 59.466 55.0 0.0 0.0 38.53 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1809 0.670854 GGGACGAGAAGAAGTGGCAC 60.671 60.000 10.29 10.29 0.00 5.01 R
1452 1819 0.815734 CCGCTTCTTAGGGACGAGAA 59.184 55.000 0.00 0.00 36.48 2.87 R
2416 2837 1.290324 GTGCAGAGCTTCCACGAGA 59.710 57.895 0.00 0.00 0.00 4.04 R
2738 3159 3.142838 GCCATGGTGAGCGCCATT 61.143 61.111 14.67 0.00 46.33 3.16 R
3370 4014 6.488006 GTCTAATTCCCACATCATACAGCATT 59.512 38.462 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.894376 CATTTGTTTGTATCCTTTTGATGCT 57.106 32.000 0.00 0.00 37.04 3.79
25 26 8.314143 CATTTGTTTGTATCCTTTTGATGCTT 57.686 30.769 0.00 0.00 37.04 3.91
26 27 7.945033 TTTGTTTGTATCCTTTTGATGCTTC 57.055 32.000 0.00 0.00 37.04 3.86
27 28 6.647334 TGTTTGTATCCTTTTGATGCTTCA 57.353 33.333 0.00 0.00 37.04 3.02
28 29 6.446318 TGTTTGTATCCTTTTGATGCTTCAC 58.554 36.000 1.02 0.00 37.04 3.18
29 30 6.265196 TGTTTGTATCCTTTTGATGCTTCACT 59.735 34.615 1.02 0.00 37.04 3.41
30 31 6.899393 TTGTATCCTTTTGATGCTTCACTT 57.101 33.333 1.02 0.00 37.04 3.16
31 32 6.899393 TGTATCCTTTTGATGCTTCACTTT 57.101 33.333 1.02 0.00 37.04 2.66
32 33 6.680810 TGTATCCTTTTGATGCTTCACTTTG 58.319 36.000 1.02 0.00 37.04 2.77
33 34 6.489700 TGTATCCTTTTGATGCTTCACTTTGA 59.510 34.615 1.02 0.00 37.04 2.69
34 35 5.850557 TCCTTTTGATGCTTCACTTTGAA 57.149 34.783 1.02 0.00 34.79 2.69
35 36 6.409524 TCCTTTTGATGCTTCACTTTGAAT 57.590 33.333 1.02 0.00 35.59 2.57
36 37 6.449698 TCCTTTTGATGCTTCACTTTGAATC 58.550 36.000 1.02 0.00 35.59 2.52
37 38 6.040729 TCCTTTTGATGCTTCACTTTGAATCA 59.959 34.615 1.02 0.00 36.99 2.57
38 39 6.702723 CCTTTTGATGCTTCACTTTGAATCAA 59.297 34.615 1.02 0.00 36.30 2.57
39 40 7.386848 CCTTTTGATGCTTCACTTTGAATCAAT 59.613 33.333 1.02 0.00 36.30 2.57
40 41 9.414295 CTTTTGATGCTTCACTTTGAATCAATA 57.586 29.630 1.02 0.00 36.30 1.90
41 42 9.761504 TTTTGATGCTTCACTTTGAATCAATAA 57.238 25.926 1.02 0.00 36.30 1.40
42 43 9.761504 TTTGATGCTTCACTTTGAATCAATAAA 57.238 25.926 1.02 3.88 36.30 1.40
43 44 9.761504 TTGATGCTTCACTTTGAATCAATAAAA 57.238 25.926 1.02 0.00 36.30 1.52
44 45 9.932207 TGATGCTTCACTTTGAATCAATAAAAT 57.068 25.926 0.00 0.00 36.30 1.82
46 47 8.761575 TGCTTCACTTTGAATCAATAAAATCC 57.238 30.769 0.00 0.00 35.59 3.01
47 48 8.366401 TGCTTCACTTTGAATCAATAAAATCCA 58.634 29.630 0.00 0.00 35.59 3.41
48 49 9.374838 GCTTCACTTTGAATCAATAAAATCCAT 57.625 29.630 0.00 0.00 35.59 3.41
50 51 9.874205 TTCACTTTGAATCAATAAAATCCATCC 57.126 29.630 0.00 0.00 30.26 3.51
51 52 9.258629 TCACTTTGAATCAATAAAATCCATCCT 57.741 29.630 0.00 0.00 0.00 3.24
52 53 9.880157 CACTTTGAATCAATAAAATCCATCCTT 57.120 29.630 0.00 0.00 0.00 3.36
58 59 9.846248 GAATCAATAAAATCCATCCTTTATCGG 57.154 33.333 0.00 0.00 29.50 4.18
59 60 9.586732 AATCAATAAAATCCATCCTTTATCGGA 57.413 29.630 0.00 0.00 37.50 4.55
60 61 8.988546 TCAATAAAATCCATCCTTTATCGGAA 57.011 30.769 0.00 0.00 36.49 4.30
61 62 9.415008 TCAATAAAATCCATCCTTTATCGGAAA 57.585 29.630 0.00 0.00 36.49 3.13
67 68 9.640952 AAATCCATCCTTTATCGGAAAATAAGA 57.359 29.630 0.00 0.00 36.49 2.10
68 69 9.640952 AATCCATCCTTTATCGGAAAATAAGAA 57.359 29.630 0.00 0.00 36.49 2.52
69 70 8.446599 TCCATCCTTTATCGGAAAATAAGAAC 57.553 34.615 0.00 0.00 36.49 3.01
70 71 8.272173 TCCATCCTTTATCGGAAAATAAGAACT 58.728 33.333 0.00 0.00 36.49 3.01
71 72 8.560374 CCATCCTTTATCGGAAAATAAGAACTC 58.440 37.037 0.00 0.00 36.49 3.01
72 73 8.560374 CATCCTTTATCGGAAAATAAGAACTCC 58.440 37.037 0.00 0.00 36.49 3.85
73 74 7.626390 TCCTTTATCGGAAAATAAGAACTCCA 58.374 34.615 0.00 0.00 0.00 3.86
74 75 7.551617 TCCTTTATCGGAAAATAAGAACTCCAC 59.448 37.037 0.00 0.00 0.00 4.02
75 76 7.553044 CCTTTATCGGAAAATAAGAACTCCACT 59.447 37.037 0.00 0.00 0.00 4.00
76 77 7.843490 TTATCGGAAAATAAGAACTCCACTG 57.157 36.000 0.00 0.00 0.00 3.66
77 78 4.000988 TCGGAAAATAAGAACTCCACTGC 58.999 43.478 0.00 0.00 0.00 4.40
78 79 3.751175 CGGAAAATAAGAACTCCACTGCA 59.249 43.478 0.00 0.00 0.00 4.41
79 80 4.142816 CGGAAAATAAGAACTCCACTGCAG 60.143 45.833 13.48 13.48 0.00 4.41
80 81 4.156739 GGAAAATAAGAACTCCACTGCAGG 59.843 45.833 19.93 6.95 0.00 4.85
81 82 4.640771 AAATAAGAACTCCACTGCAGGA 57.359 40.909 19.93 6.59 36.00 3.86
82 83 3.618690 ATAAGAACTCCACTGCAGGAC 57.381 47.619 19.93 0.00 33.19 3.85
83 84 0.034059 AAGAACTCCACTGCAGGACG 59.966 55.000 19.93 5.85 33.19 4.79
84 85 1.374758 GAACTCCACTGCAGGACGG 60.375 63.158 19.93 15.26 33.19 4.79
85 86 1.816863 GAACTCCACTGCAGGACGGA 61.817 60.000 19.93 18.60 33.19 4.69
86 87 1.194781 AACTCCACTGCAGGACGGAT 61.195 55.000 19.93 4.16 33.19 4.18
87 88 1.142748 CTCCACTGCAGGACGGATC 59.857 63.158 19.93 0.00 33.19 3.36
88 89 2.202797 CCACTGCAGGACGGATCG 60.203 66.667 19.93 0.00 0.00 3.69
89 90 2.710902 CCACTGCAGGACGGATCGA 61.711 63.158 19.93 0.00 0.00 3.59
90 91 1.226802 CACTGCAGGACGGATCGAG 60.227 63.158 19.93 0.00 0.00 4.04
91 92 2.279120 CTGCAGGACGGATCGAGC 60.279 66.667 5.57 0.00 0.00 5.03
92 93 2.755876 TGCAGGACGGATCGAGCT 60.756 61.111 0.00 0.00 0.00 4.09
93 94 2.290122 CTGCAGGACGGATCGAGCTT 62.290 60.000 5.57 0.00 0.00 3.74
94 95 1.590259 GCAGGACGGATCGAGCTTC 60.590 63.158 0.00 0.00 0.00 3.86
95 96 2.010582 GCAGGACGGATCGAGCTTCT 62.011 60.000 0.00 0.00 0.00 2.85
96 97 0.030101 CAGGACGGATCGAGCTTCTC 59.970 60.000 0.00 0.00 0.00 2.87
97 98 0.394488 AGGACGGATCGAGCTTCTCA 60.394 55.000 0.00 0.00 0.00 3.27
98 99 0.671251 GGACGGATCGAGCTTCTCAT 59.329 55.000 0.00 0.00 0.00 2.90
99 100 1.335506 GGACGGATCGAGCTTCTCATC 60.336 57.143 0.00 0.00 0.00 2.92
100 101 1.335182 GACGGATCGAGCTTCTCATCA 59.665 52.381 0.00 0.00 0.00 3.07
101 102 1.959985 ACGGATCGAGCTTCTCATCAT 59.040 47.619 0.00 0.00 0.00 2.45
102 103 2.288091 ACGGATCGAGCTTCTCATCATG 60.288 50.000 0.00 0.00 0.00 3.07
103 104 2.686235 GGATCGAGCTTCTCATCATGG 58.314 52.381 0.00 0.00 0.00 3.66
104 105 2.036992 GGATCGAGCTTCTCATCATGGT 59.963 50.000 0.00 0.00 0.00 3.55
105 106 3.494048 GGATCGAGCTTCTCATCATGGTT 60.494 47.826 0.00 0.00 0.00 3.67
106 107 3.616956 TCGAGCTTCTCATCATGGTTT 57.383 42.857 0.00 0.00 0.00 3.27
107 108 3.942829 TCGAGCTTCTCATCATGGTTTT 58.057 40.909 0.00 0.00 0.00 2.43
108 109 3.686241 TCGAGCTTCTCATCATGGTTTTG 59.314 43.478 0.00 0.00 0.00 2.44
109 110 3.181503 CGAGCTTCTCATCATGGTTTTGG 60.182 47.826 0.00 0.00 0.00 3.28
110 111 2.494870 AGCTTCTCATCATGGTTTTGGC 59.505 45.455 0.00 0.00 0.00 4.52
111 112 2.231964 GCTTCTCATCATGGTTTTGGCA 59.768 45.455 0.00 0.00 0.00 4.92
112 113 3.675228 GCTTCTCATCATGGTTTTGGCAG 60.675 47.826 0.00 0.00 0.00 4.85
113 114 1.820519 TCTCATCATGGTTTTGGCAGC 59.179 47.619 0.00 0.00 0.00 5.25
114 115 0.527113 TCATCATGGTTTTGGCAGCG 59.473 50.000 0.00 0.00 0.00 5.18
115 116 0.244450 CATCATGGTTTTGGCAGCGT 59.756 50.000 0.00 0.00 0.00 5.07
116 117 0.527565 ATCATGGTTTTGGCAGCGTC 59.472 50.000 0.00 0.00 0.00 5.19
117 118 1.080569 CATGGTTTTGGCAGCGTCC 60.081 57.895 0.00 0.00 0.00 4.79
118 119 2.625823 ATGGTTTTGGCAGCGTCCG 61.626 57.895 0.00 0.00 0.00 4.79
119 120 2.975799 GGTTTTGGCAGCGTCCGA 60.976 61.111 0.00 0.00 0.00 4.55
120 121 2.556287 GTTTTGGCAGCGTCCGAG 59.444 61.111 0.00 0.00 0.00 4.63
121 122 2.110213 TTTTGGCAGCGTCCGAGT 59.890 55.556 0.00 0.00 0.00 4.18
122 123 2.250939 TTTTGGCAGCGTCCGAGTG 61.251 57.895 0.00 0.00 0.00 3.51
123 124 4.680237 TTGGCAGCGTCCGAGTGG 62.680 66.667 0.00 0.00 0.00 4.00
175 178 2.441410 GAGGGAAAAGGCAAGAAGGAG 58.559 52.381 0.00 0.00 0.00 3.69
180 183 0.606673 AAAGGCAAGAAGGAGCGTCC 60.607 55.000 0.00 0.00 36.58 4.79
190 193 2.580966 AGGAGCGTCCGAATCTTAAC 57.419 50.000 0.00 0.00 42.75 2.01
210 213 5.407407 AACGAAGGAAGAAATAGCTGAGA 57.593 39.130 0.00 0.00 0.00 3.27
213 240 5.040635 CGAAGGAAGAAATAGCTGAGACTC 58.959 45.833 0.00 0.00 0.00 3.36
250 299 4.406972 TGACTGCATATGACCTTAGAGCTT 59.593 41.667 6.97 0.00 0.00 3.74
253 302 3.455910 TGCATATGACCTTAGAGCTTGGT 59.544 43.478 6.97 0.00 36.70 3.67
260 309 1.482593 CCTTAGAGCTTGGTCCATCGT 59.517 52.381 0.00 0.00 0.00 3.73
267 316 1.081892 CTTGGTCCATCGTTCAGCAG 58.918 55.000 0.00 0.00 0.00 4.24
286 335 1.279271 AGGGTGCATACAGACAGTTCC 59.721 52.381 0.00 0.00 0.00 3.62
295 344 0.610687 CAGACAGTTCCTGGTCCTCC 59.389 60.000 0.00 0.00 35.51 4.30
297 346 1.056660 GACAGTTCCTGGTCCTCCAA 58.943 55.000 0.00 0.00 43.81 3.53
374 466 1.149148 GTTCTGAAGCTCACCGGAAC 58.851 55.000 9.46 15.21 40.22 3.62
383 475 0.679505 CTCACCGGAACAGAACCTGA 59.320 55.000 9.46 0.00 35.18 3.86
384 476 1.276421 CTCACCGGAACAGAACCTGAT 59.724 52.381 9.46 0.00 35.18 2.90
466 593 0.103208 AGAATCAGCCCATCGTCGTC 59.897 55.000 0.00 0.00 0.00 4.20
474 601 1.297967 CCATCGTCGTCTCTCAGCG 60.298 63.158 0.00 0.00 0.00 5.18
525 655 2.857744 CGACCCGGCTGACCCTATC 61.858 68.421 0.00 0.00 0.00 2.08
527 657 0.178970 GACCCGGCTGACCCTATCTA 60.179 60.000 0.00 0.00 0.00 1.98
528 658 0.487772 ACCCGGCTGACCCTATCTAT 59.512 55.000 0.00 0.00 0.00 1.98
568 705 1.618837 CCCGAGTTCAGTCTCCTTTCA 59.381 52.381 0.00 0.00 0.00 2.69
684 829 2.176273 CGGCGATGGGCAAGAGAAG 61.176 63.158 0.00 0.00 46.16 2.85
768 916 2.815647 CTTCCGGCCGAGAAGCAC 60.816 66.667 30.38 0.00 34.77 4.40
839 1056 0.958876 CCGTCCAAGTTAACCCTGCC 60.959 60.000 0.88 0.00 0.00 4.85
888 1117 3.488978 GCAGCAGACAGAGCAGCG 61.489 66.667 0.00 0.00 34.87 5.18
995 1262 2.166907 ATCACCTCCTCGGAGTCAAT 57.833 50.000 11.76 0.00 40.44 2.57
1070 1356 0.105913 ACCTCCTCCGATCTTCCTCC 60.106 60.000 0.00 0.00 0.00 4.30
1071 1357 0.187361 CCTCCTCCGATCTTCCTCCT 59.813 60.000 0.00 0.00 0.00 3.69
1175 1483 5.385198 ACAAGAACATTTGTGTACCTCCAT 58.615 37.500 0.00 0.00 39.68 3.41
1176 1484 5.241506 ACAAGAACATTTGTGTACCTCCATG 59.758 40.000 0.00 0.00 39.68 3.66
1253 1570 3.623960 TGAAGGTTCTTTAACACGTGGTG 59.376 43.478 18.38 0.00 37.34 4.17
1303 1628 3.077359 CCTTTCCTAACCAGACAAGCAG 58.923 50.000 0.00 0.00 0.00 4.24
1346 1678 2.133553 CGTGCTGCATCTTATCCAGAG 58.866 52.381 5.27 0.00 33.87 3.35
1369 1730 4.796312 GCTTGTACAGATTCTCTTCTCGTC 59.204 45.833 0.00 0.00 0.00 4.20
1439 1806 1.256812 TCAAGACGATGACAGCCTGA 58.743 50.000 0.00 0.00 0.00 3.86
1442 1809 0.534412 AGACGATGACAGCCTGAAGG 59.466 55.000 0.00 0.00 38.53 3.46
1450 1817 1.228367 CAGCCTGAAGGTGCCACTT 60.228 57.895 0.00 0.00 37.12 3.16
1452 1819 1.073897 GCCTGAAGGTGCCACTTCT 59.926 57.895 15.71 0.00 45.49 2.85
1453 1820 0.538287 GCCTGAAGGTGCCACTTCTT 60.538 55.000 15.71 0.00 45.49 2.52
1457 1824 1.270305 TGAAGGTGCCACTTCTTCTCG 60.270 52.381 15.71 0.00 45.49 4.04
1460 1827 0.670854 GGTGCCACTTCTTCTCGTCC 60.671 60.000 0.00 0.00 0.00 4.79
1461 1828 0.670854 GTGCCACTTCTTCTCGTCCC 60.671 60.000 0.00 0.00 0.00 4.46
1619 1998 1.511850 TGAATGGTGCAGTGTTCGAG 58.488 50.000 0.00 0.00 0.00 4.04
1817 2196 2.121538 CATCCTCGTCTCCCTCGCA 61.122 63.158 0.00 0.00 0.00 5.10
2238 2659 3.695606 GCCTCTGCCAGGTCGTCA 61.696 66.667 0.00 0.00 45.61 4.35
3163 3584 4.742417 CTCAAGACAGTCATCTCGTGATT 58.258 43.478 2.66 0.00 39.48 2.57
3344 3988 3.189495 TCAGTCTTGCTAAGTCTCAGTCG 59.811 47.826 0.00 0.00 0.00 4.18
3471 4117 5.395324 CCACGACCTCAACTATACAAGGAAT 60.395 44.000 0.00 0.00 32.99 3.01
3582 4232 3.399330 GACCGGAACTCTTCAAATGACA 58.601 45.455 9.46 0.00 0.00 3.58
3643 4293 2.502947 GGGAGGTAGGGACGTGTAAAAT 59.497 50.000 0.00 0.00 0.00 1.82
3661 4311 3.876309 AATACGAATATGGCCAAGGGT 57.124 42.857 10.96 6.52 0.00 4.34
3973 4623 2.919856 ACGAGTGTCAGGGCAGCT 60.920 61.111 0.00 0.00 0.00 4.24
4160 4810 1.028905 GGATCTCTGGTCGAGTCTGG 58.971 60.000 0.00 0.00 40.75 3.86
4161 4811 1.408961 GGATCTCTGGTCGAGTCTGGA 60.409 57.143 0.00 0.00 40.75 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.894376 AGCATCAAAAGGATACAAACAAATG 57.106 32.000 0.00 0.00 41.41 2.32
1 2 8.149647 TGAAGCATCAAAAGGATACAAACAAAT 58.850 29.630 0.00 0.00 33.95 2.32
2 3 7.437862 GTGAAGCATCAAAAGGATACAAACAAA 59.562 33.333 0.00 0.00 37.30 2.83
3 4 6.922957 GTGAAGCATCAAAAGGATACAAACAA 59.077 34.615 0.00 0.00 37.30 2.83
4 5 6.265196 AGTGAAGCATCAAAAGGATACAAACA 59.735 34.615 0.00 0.00 37.30 2.83
5 6 6.681777 AGTGAAGCATCAAAAGGATACAAAC 58.318 36.000 0.00 0.00 37.30 2.93
6 7 6.899393 AGTGAAGCATCAAAAGGATACAAA 57.101 33.333 0.00 0.00 37.30 2.83
7 8 6.899393 AAGTGAAGCATCAAAAGGATACAA 57.101 33.333 0.00 0.00 37.30 2.41
8 9 6.489700 TCAAAGTGAAGCATCAAAAGGATACA 59.510 34.615 0.00 0.00 37.30 2.29
9 10 6.913170 TCAAAGTGAAGCATCAAAAGGATAC 58.087 36.000 0.00 0.00 37.30 2.24
10 11 7.523293 TTCAAAGTGAAGCATCAAAAGGATA 57.477 32.000 0.00 0.00 37.30 2.59
11 12 6.409524 TTCAAAGTGAAGCATCAAAAGGAT 57.590 33.333 0.00 0.00 37.30 3.24
12 13 5.850557 TTCAAAGTGAAGCATCAAAAGGA 57.149 34.783 0.00 0.00 37.30 3.36
13 14 6.218019 TGATTCAAAGTGAAGCATCAAAAGG 58.782 36.000 4.90 0.00 46.31 3.11
22 23 8.761575 TGGATTTTATTGATTCAAAGTGAAGC 57.238 30.769 2.68 0.00 42.60 3.86
24 25 9.874205 GGATGGATTTTATTGATTCAAAGTGAA 57.126 29.630 2.68 0.00 41.09 3.18
25 26 9.258629 AGGATGGATTTTATTGATTCAAAGTGA 57.741 29.630 2.68 0.00 0.00 3.41
26 27 9.880157 AAGGATGGATTTTATTGATTCAAAGTG 57.120 29.630 2.68 0.00 0.00 3.16
32 33 9.846248 CCGATAAAGGATGGATTTTATTGATTC 57.154 33.333 6.01 0.00 34.63 2.52
33 34 9.586732 TCCGATAAAGGATGGATTTTATTGATT 57.413 29.630 6.01 0.00 34.63 2.57
34 35 9.586732 TTCCGATAAAGGATGGATTTTATTGAT 57.413 29.630 6.01 0.00 40.48 2.57
35 36 8.988546 TTCCGATAAAGGATGGATTTTATTGA 57.011 30.769 6.01 0.00 40.48 2.57
41 42 9.640952 TCTTATTTTCCGATAAAGGATGGATTT 57.359 29.630 0.00 0.00 40.48 2.17
42 43 9.640952 TTCTTATTTTCCGATAAAGGATGGATT 57.359 29.630 0.00 0.00 40.48 3.01
43 44 9.067986 GTTCTTATTTTCCGATAAAGGATGGAT 57.932 33.333 0.00 0.00 40.48 3.41
44 45 8.272173 AGTTCTTATTTTCCGATAAAGGATGGA 58.728 33.333 0.00 0.00 40.48 3.41
45 46 8.451908 AGTTCTTATTTTCCGATAAAGGATGG 57.548 34.615 0.00 0.00 40.48 3.51
46 47 8.560374 GGAGTTCTTATTTTCCGATAAAGGATG 58.440 37.037 0.00 0.00 40.48 3.51
47 48 8.272173 TGGAGTTCTTATTTTCCGATAAAGGAT 58.728 33.333 0.00 0.00 40.48 3.24
48 49 7.551617 GTGGAGTTCTTATTTTCCGATAAAGGA 59.448 37.037 0.00 0.00 38.79 3.36
49 50 7.553044 AGTGGAGTTCTTATTTTCCGATAAAGG 59.447 37.037 0.00 0.00 32.27 3.11
50 51 8.391106 CAGTGGAGTTCTTATTTTCCGATAAAG 58.609 37.037 0.00 0.00 32.27 1.85
51 52 7.148306 GCAGTGGAGTTCTTATTTTCCGATAAA 60.148 37.037 0.00 0.00 32.27 1.40
52 53 6.315393 GCAGTGGAGTTCTTATTTTCCGATAA 59.685 38.462 0.00 0.00 32.27 1.75
53 54 5.815740 GCAGTGGAGTTCTTATTTTCCGATA 59.184 40.000 0.00 0.00 32.27 2.92
54 55 4.636206 GCAGTGGAGTTCTTATTTTCCGAT 59.364 41.667 0.00 0.00 32.27 4.18
55 56 4.000988 GCAGTGGAGTTCTTATTTTCCGA 58.999 43.478 0.00 0.00 32.27 4.55
56 57 3.751175 TGCAGTGGAGTTCTTATTTTCCG 59.249 43.478 0.00 0.00 32.27 4.30
57 58 4.156739 CCTGCAGTGGAGTTCTTATTTTCC 59.843 45.833 13.81 0.00 0.00 3.13
58 59 5.003804 TCCTGCAGTGGAGTTCTTATTTTC 58.996 41.667 13.81 0.00 0.00 2.29
59 60 4.762251 GTCCTGCAGTGGAGTTCTTATTTT 59.238 41.667 13.81 0.00 36.69 1.82
60 61 4.327680 GTCCTGCAGTGGAGTTCTTATTT 58.672 43.478 13.81 0.00 36.69 1.40
61 62 3.617531 CGTCCTGCAGTGGAGTTCTTATT 60.618 47.826 13.81 0.00 36.69 1.40
62 63 2.093973 CGTCCTGCAGTGGAGTTCTTAT 60.094 50.000 13.81 0.00 36.69 1.73
63 64 1.272490 CGTCCTGCAGTGGAGTTCTTA 59.728 52.381 13.81 0.00 36.69 2.10
64 65 0.034059 CGTCCTGCAGTGGAGTTCTT 59.966 55.000 13.81 0.00 36.69 2.52
65 66 1.668294 CGTCCTGCAGTGGAGTTCT 59.332 57.895 13.81 0.00 36.69 3.01
66 67 1.374758 CCGTCCTGCAGTGGAGTTC 60.375 63.158 13.81 2.43 36.69 3.01
67 68 1.194781 ATCCGTCCTGCAGTGGAGTT 61.195 55.000 20.14 6.49 36.69 3.01
68 69 1.608717 GATCCGTCCTGCAGTGGAGT 61.609 60.000 20.14 11.37 36.69 3.85
69 70 1.142748 GATCCGTCCTGCAGTGGAG 59.857 63.158 20.14 4.35 36.69 3.86
70 71 2.710902 CGATCCGTCCTGCAGTGGA 61.711 63.158 18.47 18.47 34.45 4.02
71 72 2.202797 CGATCCGTCCTGCAGTGG 60.203 66.667 13.81 11.57 0.00 4.00
72 73 1.226802 CTCGATCCGTCCTGCAGTG 60.227 63.158 13.81 4.33 0.00 3.66
73 74 3.069980 GCTCGATCCGTCCTGCAGT 62.070 63.158 13.81 0.00 0.00 4.40
74 75 2.279120 GCTCGATCCGTCCTGCAG 60.279 66.667 6.78 6.78 0.00 4.41
75 76 2.284798 GAAGCTCGATCCGTCCTGCA 62.285 60.000 0.00 0.00 0.00 4.41
76 77 1.590259 GAAGCTCGATCCGTCCTGC 60.590 63.158 0.00 0.00 0.00 4.85
77 78 0.030101 GAGAAGCTCGATCCGTCCTG 59.970 60.000 0.00 0.00 0.00 3.86
78 79 0.394488 TGAGAAGCTCGATCCGTCCT 60.394 55.000 0.00 0.00 32.35 3.85
79 80 0.671251 ATGAGAAGCTCGATCCGTCC 59.329 55.000 0.00 0.00 32.35 4.79
80 81 1.335182 TGATGAGAAGCTCGATCCGTC 59.665 52.381 0.00 0.00 32.35 4.79
81 82 1.393603 TGATGAGAAGCTCGATCCGT 58.606 50.000 0.00 0.00 32.35 4.69
82 83 2.326664 CATGATGAGAAGCTCGATCCG 58.673 52.381 0.00 0.00 32.35 4.18
83 84 2.036992 ACCATGATGAGAAGCTCGATCC 59.963 50.000 0.00 0.00 32.35 3.36
84 85 3.383620 ACCATGATGAGAAGCTCGATC 57.616 47.619 0.00 0.00 32.35 3.69
85 86 3.834489 AACCATGATGAGAAGCTCGAT 57.166 42.857 0.00 0.00 32.35 3.59
86 87 3.616956 AAACCATGATGAGAAGCTCGA 57.383 42.857 0.00 0.00 32.35 4.04
87 88 3.181503 CCAAAACCATGATGAGAAGCTCG 60.182 47.826 0.00 0.00 32.35 5.03
88 89 3.428589 GCCAAAACCATGATGAGAAGCTC 60.429 47.826 0.00 0.00 0.00 4.09
89 90 2.494870 GCCAAAACCATGATGAGAAGCT 59.505 45.455 0.00 0.00 0.00 3.74
90 91 2.231964 TGCCAAAACCATGATGAGAAGC 59.768 45.455 0.00 0.00 0.00 3.86
91 92 3.675228 GCTGCCAAAACCATGATGAGAAG 60.675 47.826 0.00 0.00 0.00 2.85
92 93 2.231964 GCTGCCAAAACCATGATGAGAA 59.768 45.455 0.00 0.00 0.00 2.87
93 94 1.820519 GCTGCCAAAACCATGATGAGA 59.179 47.619 0.00 0.00 0.00 3.27
94 95 1.468565 CGCTGCCAAAACCATGATGAG 60.469 52.381 0.00 0.00 0.00 2.90
95 96 0.527113 CGCTGCCAAAACCATGATGA 59.473 50.000 0.00 0.00 0.00 2.92
96 97 0.244450 ACGCTGCCAAAACCATGATG 59.756 50.000 0.00 0.00 0.00 3.07
97 98 0.527565 GACGCTGCCAAAACCATGAT 59.472 50.000 0.00 0.00 0.00 2.45
98 99 1.523154 GGACGCTGCCAAAACCATGA 61.523 55.000 0.00 0.00 0.00 3.07
99 100 1.080569 GGACGCTGCCAAAACCATG 60.081 57.895 0.00 0.00 0.00 3.66
100 101 2.625823 CGGACGCTGCCAAAACCAT 61.626 57.895 0.00 0.00 0.00 3.55
101 102 3.283684 CGGACGCTGCCAAAACCA 61.284 61.111 0.00 0.00 0.00 3.67
102 103 2.966309 CTCGGACGCTGCCAAAACC 61.966 63.158 0.00 0.00 0.00 3.27
103 104 2.251642 ACTCGGACGCTGCCAAAAC 61.252 57.895 0.00 0.00 0.00 2.43
104 105 2.110213 ACTCGGACGCTGCCAAAA 59.890 55.556 0.00 0.00 0.00 2.44
105 106 2.664851 CACTCGGACGCTGCCAAA 60.665 61.111 0.00 0.00 0.00 3.28
106 107 4.680237 CCACTCGGACGCTGCCAA 62.680 66.667 0.00 0.00 0.00 4.52
109 110 3.575351 AAGACCACTCGGACGCTGC 62.575 63.158 0.00 0.00 35.59 5.25
110 111 0.600255 AAAAGACCACTCGGACGCTG 60.600 55.000 0.00 0.00 35.59 5.18
111 112 0.600255 CAAAAGACCACTCGGACGCT 60.600 55.000 0.00 0.00 35.59 5.07
112 113 0.878961 ACAAAAGACCACTCGGACGC 60.879 55.000 0.00 0.00 35.59 5.19
113 114 0.859232 CACAAAAGACCACTCGGACG 59.141 55.000 0.00 0.00 35.59 4.79
114 115 1.202604 TCCACAAAAGACCACTCGGAC 60.203 52.381 0.00 0.00 35.59 4.79
115 116 1.070134 CTCCACAAAAGACCACTCGGA 59.930 52.381 0.00 0.00 35.59 4.55
116 117 1.070134 TCTCCACAAAAGACCACTCGG 59.930 52.381 0.00 0.00 38.77 4.63
117 118 2.526304 TCTCCACAAAAGACCACTCG 57.474 50.000 0.00 0.00 0.00 4.18
118 119 5.586643 GGATATTCTCCACAAAAGACCACTC 59.413 44.000 0.00 0.00 44.26 3.51
119 120 5.501156 GGATATTCTCCACAAAAGACCACT 58.499 41.667 0.00 0.00 44.26 4.00
120 121 5.819825 GGATATTCTCCACAAAAGACCAC 57.180 43.478 0.00 0.00 44.26 4.16
121 122 6.800540 GTGAGGATATTCTCCACAAAAGACCA 60.801 42.308 8.62 0.00 44.88 4.02
122 123 5.586643 GTGAGGATATTCTCCACAAAAGACC 59.413 44.000 8.62 0.00 44.88 3.85
123 124 5.586643 GGTGAGGATATTCTCCACAAAAGAC 59.413 44.000 8.62 0.00 44.88 3.01
175 178 1.587034 CCTTCGTTAAGATTCGGACGC 59.413 52.381 5.14 0.00 34.37 5.19
180 183 7.222999 AGCTATTTCTTCCTTCGTTAAGATTCG 59.777 37.037 0.00 0.00 34.37 3.34
190 193 5.004922 AGTCTCAGCTATTTCTTCCTTCG 57.995 43.478 0.00 0.00 0.00 3.79
250 299 1.296392 CCTGCTGAACGATGGACCA 59.704 57.895 0.00 0.00 0.00 4.02
253 302 1.296392 CACCCTGCTGAACGATGGA 59.704 57.895 0.00 0.00 0.00 3.41
254 303 2.401766 GCACCCTGCTGAACGATGG 61.402 63.158 0.00 0.00 40.96 3.51
260 309 0.983467 TCTGTATGCACCCTGCTGAA 59.017 50.000 0.00 0.00 45.31 3.02
267 316 1.279271 AGGAACTGTCTGTATGCACCC 59.721 52.381 0.00 0.00 37.18 4.61
374 466 1.338674 TGCGTGGGTTATCAGGTTCTG 60.339 52.381 0.00 0.00 0.00 3.02
383 475 1.378514 CCAAGGCTGCGTGGGTTAT 60.379 57.895 7.61 0.00 0.00 1.89
384 476 2.033448 CCAAGGCTGCGTGGGTTA 59.967 61.111 7.61 0.00 0.00 2.85
466 593 2.496817 GGTAGGTGCCGCTGAGAG 59.503 66.667 0.00 0.00 0.00 3.20
493 623 2.418746 CCGGGTCGATGTCTCATCTTTT 60.419 50.000 0.00 0.00 0.00 2.27
495 625 0.747255 CCGGGTCGATGTCTCATCTT 59.253 55.000 0.00 0.00 0.00 2.40
496 626 1.739338 GCCGGGTCGATGTCTCATCT 61.739 60.000 2.18 0.00 0.00 2.90
525 655 2.301346 GGTGCCAACTTGGGATCATAG 58.699 52.381 7.68 0.00 40.94 2.23
527 657 0.409092 TGGTGCCAACTTGGGATCAT 59.591 50.000 11.09 0.00 44.40 2.45
528 658 4.841441 GGTGCCAACTTGGGATCA 57.159 55.556 7.68 0.00 40.94 2.92
676 821 2.359107 TGCAGGGCGCTTCTCTTG 60.359 61.111 7.64 0.00 43.06 3.02
839 1056 1.148310 CTGCCGCGGAGGTTTATATG 58.852 55.000 33.48 0.00 43.70 1.78
864 1092 1.292571 CTCTGTCTGCTGCTGCTGTG 61.293 60.000 17.00 10.64 40.48 3.66
865 1093 1.004799 CTCTGTCTGCTGCTGCTGT 60.005 57.895 17.00 0.00 40.48 4.40
1070 1356 2.071262 ATGGGGCAGCAGAGGAGAG 61.071 63.158 0.00 0.00 0.00 3.20
1071 1357 2.041762 ATGGGGCAGCAGAGGAGA 59.958 61.111 0.00 0.00 0.00 3.71
1369 1730 7.718753 AGAGATAGATTGCAGAAATTGTTAGGG 59.281 37.037 0.00 0.00 0.00 3.53
1439 1806 0.759346 ACGAGAAGAAGTGGCACCTT 59.241 50.000 15.27 11.48 0.00 3.50
1442 1809 0.670854 GGGACGAGAAGAAGTGGCAC 60.671 60.000 10.29 10.29 0.00 5.01
1446 1813 4.785511 TTCTTAGGGACGAGAAGAAGTG 57.214 45.455 0.00 0.00 34.95 3.16
1452 1819 0.815734 CCGCTTCTTAGGGACGAGAA 59.184 55.000 0.00 0.00 36.48 2.87
1453 1820 2.490165 CCGCTTCTTAGGGACGAGA 58.510 57.895 0.00 0.00 36.48 4.04
1461 1828 4.467084 TGCCGCCCCGCTTCTTAG 62.467 66.667 0.00 0.00 0.00 2.18
1486 1856 3.186613 GCTTACATAGAATTACTGCCGGC 59.813 47.826 22.73 22.73 0.00 6.13
1817 2196 2.145397 TCATGCCGAGAAGGTAGACT 57.855 50.000 0.00 0.00 43.70 3.24
2416 2837 1.290324 GTGCAGAGCTTCCACGAGA 59.710 57.895 0.00 0.00 0.00 4.04
2738 3159 3.142838 GCCATGGTGAGCGCCATT 61.143 61.111 14.67 0.00 46.33 3.16
3370 4014 6.488006 GTCTAATTCCCACATCATACAGCATT 59.512 38.462 0.00 0.00 0.00 3.56
3471 4117 1.218844 GTATTGGGCCCACCTCCTAA 58.781 55.000 28.70 8.65 41.11 2.69
3582 4232 2.351276 CAAGGGCTTGCCTACGGT 59.649 61.111 11.71 0.00 33.45 4.83
3643 4293 2.120312 TGACCCTTGGCCATATTCGTA 58.880 47.619 6.09 0.00 0.00 3.43
3973 4623 4.147449 CCGATGCAGACTGGGCGA 62.147 66.667 4.26 0.00 0.00 5.54
4072 4722 1.675310 CATTGGGCCGCTGTCAAGA 60.675 57.895 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.